From 24fda3d26454a64df85305138f44cae40c7b9678 Mon Sep 17 00:00:00 2001 From: "Robin H. Johnson" Date: Sun, 8 Nov 2015 20:11:44 -0800 Subject: Rename all old ChangeLogs to ChangeLog-2015, which will be amended at the end of the year. Signed-off-by: Robin H. Johnson --- sci-chemistry/GromacsWrapper/ChangeLog | 24 - sci-chemistry/GromacsWrapper/ChangeLog-2015 | 24 + sci-chemistry/PyMca/ChangeLog | 34 - sci-chemistry/PyMca/ChangeLog-2015 | 34 + sci-chemistry/acpype/ChangeLog | 33 - sci-chemistry/acpype/ChangeLog-2015 | 33 + sci-chemistry/ambertools/ChangeLog | 25 - sci-chemistry/ambertools/ChangeLog-2015 | 25 + sci-chemistry/apbs/ChangeLog | 386 -------- sci-chemistry/apbs/ChangeLog-2015 | 386 ++++++++ sci-chemistry/aqua/ChangeLog | 39 - sci-chemistry/aqua/ChangeLog-2015 | 39 + sci-chemistry/aria/ChangeLog | 107 --- sci-chemistry/aria/ChangeLog-2015 | 107 +++ sci-chemistry/arp-warp-bin/ChangeLog | 113 --- sci-chemistry/arp-warp-bin/ChangeLog-2015 | 113 +++ sci-chemistry/autodock/ChangeLog | 53 -- sci-chemistry/autodock/ChangeLog-2015 | 53 ++ sci-chemistry/autodock_vina/ChangeLog | 50 -- sci-chemistry/autodock_vina/ChangeLog-2015 | 50 ++ sci-chemistry/avogadro/ChangeLog | 237 ----- sci-chemistry/avogadro/ChangeLog-2015 | 237 +++++ sci-chemistry/azara/ChangeLog | 80 -- sci-chemistry/azara/ChangeLog-2015 | 80 ++ sci-chemistry/babel/ChangeLog | 86 -- sci-chemistry/babel/ChangeLog-2015 | 86 ++ sci-chemistry/balbes/ChangeLog | 56 -- sci-chemistry/balbes/ChangeLog-2015 | 56 ++ sci-chemistry/ball/ChangeLog | 86 -- sci-chemistry/ball/ChangeLog-2015 | 86 ++ sci-chemistry/bkchem/ChangeLog | 40 - sci-chemistry/bkchem/ChangeLog-2015 | 40 + sci-chemistry/bodr/ChangeLog | 50 -- sci-chemistry/bodr/ChangeLog-2015 | 50 ++ sci-chemistry/burrow-owl/ChangeLog | 56 -- sci-chemistry/burrow-owl/ChangeLog-2015 | 56 ++ sci-chemistry/cara-bin/ChangeLog | 51 -- sci-chemistry/cara-bin/ChangeLog-2015 | 51 ++ sci-chemistry/ccp4-apps/ChangeLog | 227 ----- sci-chemistry/ccp4-apps/ChangeLog-2015 | 227 +++++ sci-chemistry/ccp4/ChangeLog | 161 ---- sci-chemistry/ccp4/ChangeLog-2015 | 161 ++++ sci-chemistry/ccp4i/ChangeLog | 76 -- sci-chemistry/ccp4i/ChangeLog-2015 | 76 ++ sci-chemistry/ccpn/ChangeLog | 988 --------------------- sci-chemistry/ccpn/ChangeLog-2015 | 988 +++++++++++++++++++++ sci-chemistry/chemical-mime-data/ChangeLog | 49 - sci-chemistry/chemical-mime-data/ChangeLog-2015 | 49 + sci-chemistry/chemtool/ChangeLog | 227 ----- sci-chemistry/chemtool/ChangeLog-2015 | 227 +++++ sci-chemistry/clashlist/ChangeLog | 25 - sci-chemistry/clashlist/ChangeLog-2015 | 25 + sci-chemistry/cluster/ChangeLog | 46 - sci-chemistry/cluster/ChangeLog-2015 | 46 + sci-chemistry/cns/ChangeLog | 270 ------ sci-chemistry/cns/ChangeLog-2015 | 270 ++++++ sci-chemistry/coot/ChangeLog | 291 ------ sci-chemistry/coot/ChangeLog-2015 | 291 ++++++ sci-chemistry/cyana/ChangeLog | 65 -- sci-chemistry/cyana/ChangeLog-2015 | 65 ++ sci-chemistry/dssp/ChangeLog | 84 -- sci-chemistry/dssp/ChangeLog-2015 | 84 ++ sci-chemistry/easychem/ChangeLog | 99 --- sci-chemistry/easychem/ChangeLog-2015 | 99 +++ sci-chemistry/eden/ChangeLog | 87 -- sci-chemistry/eden/ChangeLog-2015 | 87 ++ sci-chemistry/elem/ChangeLog | 69 -- sci-chemistry/elem/ChangeLog-2015 | 69 ++ sci-chemistry/freeon/ChangeLog | 27 - sci-chemistry/freeon/ChangeLog-2015 | 27 + sci-chemistry/gabedit/ChangeLog | 128 --- sci-chemistry/gabedit/ChangeLog-2015 | 128 +++ sci-chemistry/gamess/ChangeLog | 326 ------- sci-chemistry/gamess/ChangeLog-2015 | 326 +++++++ sci-chemistry/gamessq/ChangeLog | 14 - sci-chemistry/gamessq/ChangeLog-2015 | 14 + sci-chemistry/gelemental/ChangeLog | 44 - sci-chemistry/gelemental/ChangeLog-2015 | 44 + sci-chemistry/ghemical/ChangeLog | 204 ----- sci-chemistry/ghemical/ChangeLog-2015 | 204 +++++ sci-chemistry/gopenmol/ChangeLog | 68 -- sci-chemistry/gopenmol/ChangeLog-2015 | 68 ++ sci-chemistry/gperiodic/ChangeLog | 117 --- sci-chemistry/gperiodic/ChangeLog-2015 | 117 +++ sci-chemistry/gromacs/ChangeLog | 720 --------------- sci-chemistry/gromacs/ChangeLog-2015 | 720 +++++++++++++++ sci-chemistry/gsim/ChangeLog | 55 -- sci-chemistry/gsim/ChangeLog-2015 | 55 ++ sci-chemistry/gtk-gamess/ChangeLog | 39 - sci-chemistry/gtk-gamess/ChangeLog-2015 | 39 + sci-chemistry/hollow/ChangeLog | 25 - sci-chemistry/hollow/ChangeLog-2015 | 25 + sci-chemistry/icm-browser/ChangeLog | 38 - sci-chemistry/icm-browser/ChangeLog-2015 | 38 + sci-chemistry/icm/ChangeLog | 85 -- sci-chemistry/icm/ChangeLog-2015 | 85 ++ sci-chemistry/imosflm/ChangeLog | 38 - sci-chemistry/imosflm/ChangeLog-2015 | 38 + sci-chemistry/jmol/ChangeLog | 79 -- sci-chemistry/jmol/ChangeLog-2015 | 79 ++ sci-chemistry/ksdssp/ChangeLog | 21 - sci-chemistry/ksdssp/ChangeLog-2015 | 21 + sci-chemistry/makecif/ChangeLog | 48 - sci-chemistry/makecif/ChangeLog-2015 | 48 + sci-chemistry/mars/ChangeLog | 30 - sci-chemistry/mars/ChangeLog-2015 | 30 + sci-chemistry/massxpert/ChangeLog | 68 -- sci-chemistry/massxpert/ChangeLog-2015 | 68 ++ sci-chemistry/mdanalysis/ChangeLog | 12 - sci-chemistry/mdanalysis/ChangeLog-2015 | 12 + sci-chemistry/mead/ChangeLog | 42 - sci-chemistry/mead/ChangeLog-2015 | 42 + sci-chemistry/mm-align/ChangeLog | 14 - sci-chemistry/mm-align/ChangeLog-2015 | 14 + sci-chemistry/molden/ChangeLog | 253 ------ sci-chemistry/molden/ChangeLog-2015 | 253 ++++++ sci-chemistry/moldy/ChangeLog | 110 --- sci-chemistry/moldy/ChangeLog-2015 | 110 +++ sci-chemistry/molequeue/ChangeLog | 41 - sci-chemistry/molequeue/ChangeLog-2015 | 41 + sci-chemistry/molmol/ChangeLog | 146 --- sci-chemistry/molmol/ChangeLog-2015 | 146 +++ sci-chemistry/molrep/ChangeLog | 103 --- sci-chemistry/molrep/ChangeLog-2015 | 103 +++ sci-chemistry/molscript/ChangeLog | 88 -- sci-chemistry/molscript/ChangeLog-2015 | 88 ++ sci-chemistry/molsketch/ChangeLog | 48 - sci-chemistry/molsketch/ChangeLog-2015 | 48 + sci-chemistry/mongochem/ChangeLog | 10 - sci-chemistry/mongochem/ChangeLog-2015 | 10 + sci-chemistry/mopac7/ChangeLog | 146 --- sci-chemistry/mopac7/ChangeLog-2015 | 146 +++ sci-chemistry/mosflm/ChangeLog | 116 --- sci-chemistry/mosflm/ChangeLog-2015 | 116 +++ sci-chemistry/mpqc/ChangeLog | 177 ---- sci-chemistry/mpqc/ChangeLog-2015 | 177 ++++ sci-chemistry/mrbump/ChangeLog | 35 - sci-chemistry/mrbump/ChangeLog-2015 | 35 + sci-chemistry/msms-bin/ChangeLog | 39 - sci-chemistry/msms-bin/ChangeLog-2015 | 39 + sci-chemistry/mustang/ChangeLog | 50 -- sci-chemistry/mustang/ChangeLog-2015 | 50 ++ sci-chemistry/namd/ChangeLog | 112 --- sci-chemistry/namd/ChangeLog-2015 | 112 +++ sci-chemistry/nmrglue/ChangeLog | 21 - sci-chemistry/nmrglue/ChangeLog-2015 | 21 + sci-chemistry/numbat/ChangeLog | 22 - sci-chemistry/numbat/ChangeLog-2015 | 22 + sci-chemistry/oasis/ChangeLog | 96 -- sci-chemistry/oasis/ChangeLog-2015 | 96 ++ sci-chemistry/openbabel-perl/ChangeLog | 64 -- sci-chemistry/openbabel-perl/ChangeLog-2015 | 64 ++ sci-chemistry/openbabel-python/ChangeLog | 103 --- sci-chemistry/openbabel-python/ChangeLog-2015 | 103 +++ sci-chemistry/openbabel/ChangeLog | 314 ------- sci-chemistry/openbabel/ChangeLog-2015 | 314 +++++++ sci-chemistry/ortep3/ChangeLog | 46 - sci-chemistry/ortep3/ChangeLog-2015 | 46 + sci-chemistry/p3d/ChangeLog | 24 - sci-chemistry/p3d/ChangeLog-2015 | 24 + sci-chemistry/parassign/ChangeLog | 18 - sci-chemistry/parassign/ChangeLog-2015 | 18 + sci-chemistry/pdb-extract/ChangeLog | 99 --- sci-chemistry/pdb-extract/ChangeLog-2015 | 99 +++ sci-chemistry/pdb-tools/ChangeLog | 91 -- sci-chemistry/pdb-tools/ChangeLog-2015 | 91 ++ sci-chemistry/pdb2pqr/ChangeLog | 224 ----- sci-chemistry/pdb2pqr/ChangeLog-2015 | 224 +++++ sci-chemistry/pdbcat/ChangeLog | 16 - sci-chemistry/pdbcat/ChangeLog-2015 | 16 + sci-chemistry/pdbcns/ChangeLog | 10 - sci-chemistry/pdbcns/ChangeLog-2015 | 10 + sci-chemistry/pdbmat/ChangeLog | 23 - sci-chemistry/pdbmat/ChangeLog-2015 | 23 + sci-chemistry/phaser/ChangeLog | 22 - sci-chemistry/phaser/ChangeLog-2015 | 22 + sci-chemistry/platon/ChangeLog | 145 --- sci-chemistry/platon/ChangeLog-2015 | 145 +++ sci-chemistry/pointless/ChangeLog | 177 ---- sci-chemistry/pointless/ChangeLog-2015 | 177 ++++ sci-chemistry/povscript+/ChangeLog | 34 - sci-chemistry/povscript+/ChangeLog-2015 | 34 + sci-chemistry/prekin/ChangeLog | 31 - sci-chemistry/prekin/ChangeLog-2015 | 31 + sci-chemistry/probe/ChangeLog | 85 -- sci-chemistry/probe/ChangeLog-2015 | 85 ++ sci-chemistry/procheck/ChangeLog | 48 - sci-chemistry/procheck/ChangeLog-2015 | 48 + sci-chemistry/prodecomp/ChangeLog | 13 - sci-chemistry/prodecomp/ChangeLog-2015 | 13 + sci-chemistry/propka/ChangeLog | 18 - sci-chemistry/propka/ChangeLog-2015 | 18 + sci-chemistry/psi/ChangeLog | 109 --- sci-chemistry/psi/ChangeLog-2015 | 109 +++ sci-chemistry/pymol-apbs-plugin/ChangeLog | 80 -- sci-chemistry/pymol-apbs-plugin/ChangeLog-2015 | 80 ++ sci-chemistry/pymol-plugins-bni-tools/ChangeLog | 20 - .../pymol-plugins-bni-tools/ChangeLog-2015 | 20 + sci-chemistry/pymol-plugins-caver/ChangeLog | 17 - sci-chemistry/pymol-plugins-caver/ChangeLog-2015 | 17 + sci-chemistry/pymol-plugins-dssp/ChangeLog | 29 - sci-chemistry/pymol-plugins-dssp/ChangeLog-2015 | 29 + sci-chemistry/pymol-plugins-dynamics/ChangeLog | 18 - .../pymol-plugins-dynamics/ChangeLog-2015 | 18 + sci-chemistry/pymol-plugins-emovie/ChangeLog | 15 - sci-chemistry/pymol-plugins-emovie/ChangeLog-2015 | 15 + sci-chemistry/pymol-plugins-msms/ChangeLog | 20 - sci-chemistry/pymol-plugins-msms/ChangeLog-2015 | 20 + sci-chemistry/pymol-plugins-promol/ChangeLog | 39 - sci-chemistry/pymol-plugins-promol/ChangeLog-2015 | 39 + sci-chemistry/pymol-plugins-psico/ChangeLog | 33 - sci-chemistry/pymol-plugins-psico/ChangeLog-2015 | 33 + sci-chemistry/pymol/ChangeLog | 256 ------ sci-chemistry/pymol/ChangeLog-2015 | 256 ++++++ sci-chemistry/rasmol/ChangeLog | 235 ----- sci-chemistry/rasmol/ChangeLog-2015 | 235 +++++ sci-chemistry/raster3d/ChangeLog | 160 ---- sci-chemistry/raster3d/ChangeLog-2015 | 160 ++++ sci-chemistry/reduce/ChangeLog | 100 --- sci-chemistry/reduce/ChangeLog-2015 | 100 +++ sci-chemistry/refmac/ChangeLog | 318 ------- sci-chemistry/refmac/ChangeLog-2015 | 318 +++++++ sci-chemistry/relax/ChangeLog | 206 ----- sci-chemistry/relax/ChangeLog-2015 | 206 +++++ sci-chemistry/scala/ChangeLog | 89 -- sci-chemistry/scala/ChangeLog-2015 | 89 ++ sci-chemistry/sfcheck/ChangeLog | 57 -- sci-chemistry/sfcheck/ChangeLog-2015 | 57 ++ sci-chemistry/shelx/ChangeLog | 117 --- sci-chemistry/shelx/ChangeLog-2015 | 117 +++ sci-chemistry/solve-resolve-bin/ChangeLog | 25 - sci-chemistry/solve-resolve-bin/ChangeLog-2015 | 25 + sci-chemistry/sparky/ChangeLog | 89 -- sci-chemistry/sparky/ChangeLog-2015 | 89 ++ sci-chemistry/suitename/ChangeLog | 17 - sci-chemistry/suitename/ChangeLog-2015 | 17 + sci-chemistry/surf/ChangeLog | 27 - sci-chemistry/surf/ChangeLog-2015 | 27 + sci-chemistry/theseus/ChangeLog | 56 -- sci-chemistry/theseus/ChangeLog-2015 | 56 ++ sci-chemistry/threeV/ChangeLog | 13 - sci-chemistry/threeV/ChangeLog-2015 | 13 + sci-chemistry/tinker/ChangeLog | 156 ---- sci-chemistry/tinker/ChangeLog-2015 | 156 ++++ sci-chemistry/tm-align/ChangeLog | 71 -- sci-chemistry/tm-align/ChangeLog-2015 | 71 ++ sci-chemistry/viewmol/ChangeLog | 71 -- sci-chemistry/viewmol/ChangeLog-2015 | 71 ++ sci-chemistry/vmd/ChangeLog | 292 ------ sci-chemistry/vmd/ChangeLog-2015 | 292 ++++++ sci-chemistry/votca-csg/ChangeLog | 117 --- sci-chemistry/votca-csg/ChangeLog-2015 | 117 +++ sci-chemistry/votca-csgapps/ChangeLog | 66 -- sci-chemistry/votca-csgapps/ChangeLog-2015 | 66 ++ sci-chemistry/wxmacmolplt/ChangeLog | 66 -- sci-chemistry/wxmacmolplt/ChangeLog-2015 | 66 ++ sci-chemistry/xds-bin/ChangeLog | 99 --- sci-chemistry/xds-bin/ChangeLog-2015 | 99 +++ sci-chemistry/xdsgui/ChangeLog | 16 - sci-chemistry/xdsgui/ChangeLog-2015 | 16 + sci-chemistry/xdsi/ChangeLog | 36 - sci-chemistry/xdsi/ChangeLog-2015 | 36 + sci-chemistry/xdsstat-bin/ChangeLog | 27 - sci-chemistry/xdsstat-bin/ChangeLog-2015 | 27 + sci-chemistry/xia2/ChangeLog | 68 -- sci-chemistry/xia2/ChangeLog-2015 | 68 ++ sci-chemistry/xyza2pipe/ChangeLog | 16 - sci-chemistry/xyza2pipe/ChangeLog-2015 | 16 + 268 files changed, 13076 insertions(+), 13076 deletions(-) delete mode 100644 sci-chemistry/GromacsWrapper/ChangeLog create mode 100644 sci-chemistry/GromacsWrapper/ChangeLog-2015 delete mode 100644 sci-chemistry/PyMca/ChangeLog create mode 100644 sci-chemistry/PyMca/ChangeLog-2015 delete mode 100644 sci-chemistry/acpype/ChangeLog create mode 100644 sci-chemistry/acpype/ChangeLog-2015 delete mode 100644 sci-chemistry/ambertools/ChangeLog create mode 100644 sci-chemistry/ambertools/ChangeLog-2015 delete mode 100644 sci-chemistry/apbs/ChangeLog create mode 100644 sci-chemistry/apbs/ChangeLog-2015 delete mode 100644 sci-chemistry/aqua/ChangeLog create mode 100644 sci-chemistry/aqua/ChangeLog-2015 delete mode 100644 sci-chemistry/aria/ChangeLog create mode 100644 sci-chemistry/aria/ChangeLog-2015 delete mode 100644 sci-chemistry/arp-warp-bin/ChangeLog create mode 100644 sci-chemistry/arp-warp-bin/ChangeLog-2015 delete mode 100644 sci-chemistry/autodock/ChangeLog create mode 100644 sci-chemistry/autodock/ChangeLog-2015 delete mode 100644 sci-chemistry/autodock_vina/ChangeLog create mode 100644 sci-chemistry/autodock_vina/ChangeLog-2015 delete mode 100644 sci-chemistry/avogadro/ChangeLog create mode 100644 sci-chemistry/avogadro/ChangeLog-2015 delete mode 100644 sci-chemistry/azara/ChangeLog create mode 100644 sci-chemistry/azara/ChangeLog-2015 delete mode 100644 sci-chemistry/babel/ChangeLog create mode 100644 sci-chemistry/babel/ChangeLog-2015 delete mode 100644 sci-chemistry/balbes/ChangeLog create mode 100644 sci-chemistry/balbes/ChangeLog-2015 delete mode 100644 sci-chemistry/ball/ChangeLog create mode 100644 sci-chemistry/ball/ChangeLog-2015 delete mode 100644 sci-chemistry/bkchem/ChangeLog create mode 100644 sci-chemistry/bkchem/ChangeLog-2015 delete mode 100644 sci-chemistry/bodr/ChangeLog create mode 100644 sci-chemistry/bodr/ChangeLog-2015 delete mode 100644 sci-chemistry/burrow-owl/ChangeLog create mode 100644 sci-chemistry/burrow-owl/ChangeLog-2015 delete mode 100644 sci-chemistry/cara-bin/ChangeLog create mode 100644 sci-chemistry/cara-bin/ChangeLog-2015 delete mode 100644 sci-chemistry/ccp4-apps/ChangeLog create mode 100644 sci-chemistry/ccp4-apps/ChangeLog-2015 delete mode 100644 sci-chemistry/ccp4/ChangeLog create mode 100644 sci-chemistry/ccp4/ChangeLog-2015 delete mode 100644 sci-chemistry/ccp4i/ChangeLog create mode 100644 sci-chemistry/ccp4i/ChangeLog-2015 delete mode 100644 sci-chemistry/ccpn/ChangeLog create mode 100644 sci-chemistry/ccpn/ChangeLog-2015 delete mode 100644 sci-chemistry/chemical-mime-data/ChangeLog create mode 100644 sci-chemistry/chemical-mime-data/ChangeLog-2015 delete mode 100644 sci-chemistry/chemtool/ChangeLog create mode 100644 sci-chemistry/chemtool/ChangeLog-2015 delete mode 100644 sci-chemistry/clashlist/ChangeLog create mode 100644 sci-chemistry/clashlist/ChangeLog-2015 delete mode 100644 sci-chemistry/cluster/ChangeLog create mode 100644 sci-chemistry/cluster/ChangeLog-2015 delete mode 100644 sci-chemistry/cns/ChangeLog create mode 100644 sci-chemistry/cns/ChangeLog-2015 delete mode 100644 sci-chemistry/coot/ChangeLog create mode 100644 sci-chemistry/coot/ChangeLog-2015 delete mode 100644 sci-chemistry/cyana/ChangeLog create mode 100644 sci-chemistry/cyana/ChangeLog-2015 delete mode 100644 sci-chemistry/dssp/ChangeLog create mode 100644 sci-chemistry/dssp/ChangeLog-2015 delete mode 100644 sci-chemistry/easychem/ChangeLog create mode 100644 sci-chemistry/easychem/ChangeLog-2015 delete mode 100644 sci-chemistry/eden/ChangeLog create mode 100644 sci-chemistry/eden/ChangeLog-2015 delete mode 100644 sci-chemistry/elem/ChangeLog create mode 100644 sci-chemistry/elem/ChangeLog-2015 delete mode 100644 sci-chemistry/freeon/ChangeLog create mode 100644 sci-chemistry/freeon/ChangeLog-2015 delete mode 100644 sci-chemistry/gabedit/ChangeLog create mode 100644 sci-chemistry/gabedit/ChangeLog-2015 delete mode 100644 sci-chemistry/gamess/ChangeLog create mode 100644 sci-chemistry/gamess/ChangeLog-2015 delete mode 100644 sci-chemistry/gamessq/ChangeLog create mode 100644 sci-chemistry/gamessq/ChangeLog-2015 delete mode 100644 sci-chemistry/gelemental/ChangeLog create mode 100644 sci-chemistry/gelemental/ChangeLog-2015 delete mode 100644 sci-chemistry/ghemical/ChangeLog create mode 100644 sci-chemistry/ghemical/ChangeLog-2015 delete mode 100644 sci-chemistry/gopenmol/ChangeLog create mode 100644 sci-chemistry/gopenmol/ChangeLog-2015 delete mode 100644 sci-chemistry/gperiodic/ChangeLog create mode 100644 sci-chemistry/gperiodic/ChangeLog-2015 delete mode 100644 sci-chemistry/gromacs/ChangeLog create mode 100644 sci-chemistry/gromacs/ChangeLog-2015 delete mode 100644 sci-chemistry/gsim/ChangeLog create mode 100644 sci-chemistry/gsim/ChangeLog-2015 delete mode 100644 sci-chemistry/gtk-gamess/ChangeLog create mode 100644 sci-chemistry/gtk-gamess/ChangeLog-2015 delete mode 100644 sci-chemistry/hollow/ChangeLog create mode 100644 sci-chemistry/hollow/ChangeLog-2015 delete mode 100644 sci-chemistry/icm-browser/ChangeLog create mode 100644 sci-chemistry/icm-browser/ChangeLog-2015 delete mode 100644 sci-chemistry/icm/ChangeLog create mode 100644 sci-chemistry/icm/ChangeLog-2015 delete mode 100644 sci-chemistry/imosflm/ChangeLog create mode 100644 sci-chemistry/imosflm/ChangeLog-2015 delete mode 100644 sci-chemistry/jmol/ChangeLog create mode 100644 sci-chemistry/jmol/ChangeLog-2015 delete mode 100644 sci-chemistry/ksdssp/ChangeLog create mode 100644 sci-chemistry/ksdssp/ChangeLog-2015 delete mode 100644 sci-chemistry/makecif/ChangeLog create mode 100644 sci-chemistry/makecif/ChangeLog-2015 delete mode 100644 sci-chemistry/mars/ChangeLog create mode 100644 sci-chemistry/mars/ChangeLog-2015 delete mode 100644 sci-chemistry/massxpert/ChangeLog create mode 100644 sci-chemistry/massxpert/ChangeLog-2015 delete mode 100644 sci-chemistry/mdanalysis/ChangeLog create mode 100644 sci-chemistry/mdanalysis/ChangeLog-2015 delete mode 100644 sci-chemistry/mead/ChangeLog create mode 100644 sci-chemistry/mead/ChangeLog-2015 delete mode 100644 sci-chemistry/mm-align/ChangeLog create mode 100644 sci-chemistry/mm-align/ChangeLog-2015 delete mode 100644 sci-chemistry/molden/ChangeLog create mode 100644 sci-chemistry/molden/ChangeLog-2015 delete mode 100644 sci-chemistry/moldy/ChangeLog create mode 100644 sci-chemistry/moldy/ChangeLog-2015 delete mode 100644 sci-chemistry/molequeue/ChangeLog create mode 100644 sci-chemistry/molequeue/ChangeLog-2015 delete mode 100644 sci-chemistry/molmol/ChangeLog create mode 100644 sci-chemistry/molmol/ChangeLog-2015 delete mode 100644 sci-chemistry/molrep/ChangeLog create mode 100644 sci-chemistry/molrep/ChangeLog-2015 delete mode 100644 sci-chemistry/molscript/ChangeLog create mode 100644 sci-chemistry/molscript/ChangeLog-2015 delete mode 100644 sci-chemistry/molsketch/ChangeLog create mode 100644 sci-chemistry/molsketch/ChangeLog-2015 delete mode 100644 sci-chemistry/mongochem/ChangeLog create mode 100644 sci-chemistry/mongochem/ChangeLog-2015 delete mode 100644 sci-chemistry/mopac7/ChangeLog create mode 100644 sci-chemistry/mopac7/ChangeLog-2015 delete mode 100644 sci-chemistry/mosflm/ChangeLog create mode 100644 sci-chemistry/mosflm/ChangeLog-2015 delete mode 100644 sci-chemistry/mpqc/ChangeLog create mode 100644 sci-chemistry/mpqc/ChangeLog-2015 delete mode 100644 sci-chemistry/mrbump/ChangeLog create mode 100644 sci-chemistry/mrbump/ChangeLog-2015 delete mode 100644 sci-chemistry/msms-bin/ChangeLog create mode 100644 sci-chemistry/msms-bin/ChangeLog-2015 delete mode 100644 sci-chemistry/mustang/ChangeLog create mode 100644 sci-chemistry/mustang/ChangeLog-2015 delete mode 100644 sci-chemistry/namd/ChangeLog create mode 100644 sci-chemistry/namd/ChangeLog-2015 delete mode 100644 sci-chemistry/nmrglue/ChangeLog create mode 100644 sci-chemistry/nmrglue/ChangeLog-2015 delete mode 100644 sci-chemistry/numbat/ChangeLog create mode 100644 sci-chemistry/numbat/ChangeLog-2015 delete mode 100644 sci-chemistry/oasis/ChangeLog create mode 100644 sci-chemistry/oasis/ChangeLog-2015 delete mode 100644 sci-chemistry/openbabel-perl/ChangeLog create mode 100644 sci-chemistry/openbabel-perl/ChangeLog-2015 delete mode 100644 sci-chemistry/openbabel-python/ChangeLog create mode 100644 sci-chemistry/openbabel-python/ChangeLog-2015 delete mode 100644 sci-chemistry/openbabel/ChangeLog create mode 100644 sci-chemistry/openbabel/ChangeLog-2015 delete mode 100644 sci-chemistry/ortep3/ChangeLog create mode 100644 sci-chemistry/ortep3/ChangeLog-2015 delete mode 100644 sci-chemistry/p3d/ChangeLog create mode 100644 sci-chemistry/p3d/ChangeLog-2015 delete mode 100644 sci-chemistry/parassign/ChangeLog create mode 100644 sci-chemistry/parassign/ChangeLog-2015 delete mode 100644 sci-chemistry/pdb-extract/ChangeLog create mode 100644 sci-chemistry/pdb-extract/ChangeLog-2015 delete mode 100644 sci-chemistry/pdb-tools/ChangeLog create mode 100644 sci-chemistry/pdb-tools/ChangeLog-2015 delete mode 100644 sci-chemistry/pdb2pqr/ChangeLog create mode 100644 sci-chemistry/pdb2pqr/ChangeLog-2015 delete mode 100644 sci-chemistry/pdbcat/ChangeLog create mode 100644 sci-chemistry/pdbcat/ChangeLog-2015 delete mode 100644 sci-chemistry/pdbcns/ChangeLog create mode 100644 sci-chemistry/pdbcns/ChangeLog-2015 delete mode 100644 sci-chemistry/pdbmat/ChangeLog create mode 100644 sci-chemistry/pdbmat/ChangeLog-2015 delete mode 100644 sci-chemistry/phaser/ChangeLog create mode 100644 sci-chemistry/phaser/ChangeLog-2015 delete mode 100644 sci-chemistry/platon/ChangeLog create mode 100644 sci-chemistry/platon/ChangeLog-2015 delete mode 100644 sci-chemistry/pointless/ChangeLog create mode 100644 sci-chemistry/pointless/ChangeLog-2015 delete mode 100644 sci-chemistry/povscript+/ChangeLog create mode 100644 sci-chemistry/povscript+/ChangeLog-2015 delete mode 100644 sci-chemistry/prekin/ChangeLog create mode 100644 sci-chemistry/prekin/ChangeLog-2015 delete mode 100644 sci-chemistry/probe/ChangeLog create mode 100644 sci-chemistry/probe/ChangeLog-2015 delete mode 100644 sci-chemistry/procheck/ChangeLog create mode 100644 sci-chemistry/procheck/ChangeLog-2015 delete mode 100644 sci-chemistry/prodecomp/ChangeLog create mode 100644 sci-chemistry/prodecomp/ChangeLog-2015 delete mode 100644 sci-chemistry/propka/ChangeLog create mode 100644 sci-chemistry/propka/ChangeLog-2015 delete mode 100644 sci-chemistry/psi/ChangeLog create mode 100644 sci-chemistry/psi/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-apbs-plugin/ChangeLog create mode 100644 sci-chemistry/pymol-apbs-plugin/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-bni-tools/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-bni-tools/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-caver/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-caver/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-dssp/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-dssp/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-dynamics/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-dynamics/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-emovie/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-emovie/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-msms/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-msms/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-promol/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-promol/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol-plugins-psico/ChangeLog create mode 100644 sci-chemistry/pymol-plugins-psico/ChangeLog-2015 delete mode 100644 sci-chemistry/pymol/ChangeLog create mode 100644 sci-chemistry/pymol/ChangeLog-2015 delete mode 100644 sci-chemistry/rasmol/ChangeLog create mode 100644 sci-chemistry/rasmol/ChangeLog-2015 delete mode 100644 sci-chemistry/raster3d/ChangeLog create mode 100644 sci-chemistry/raster3d/ChangeLog-2015 delete mode 100644 sci-chemistry/reduce/ChangeLog create mode 100644 sci-chemistry/reduce/ChangeLog-2015 delete mode 100644 sci-chemistry/refmac/ChangeLog create mode 100644 sci-chemistry/refmac/ChangeLog-2015 delete mode 100644 sci-chemistry/relax/ChangeLog create mode 100644 sci-chemistry/relax/ChangeLog-2015 delete mode 100644 sci-chemistry/scala/ChangeLog create mode 100644 sci-chemistry/scala/ChangeLog-2015 delete mode 100644 sci-chemistry/sfcheck/ChangeLog create mode 100644 sci-chemistry/sfcheck/ChangeLog-2015 delete mode 100644 sci-chemistry/shelx/ChangeLog create mode 100644 sci-chemistry/shelx/ChangeLog-2015 delete mode 100644 sci-chemistry/solve-resolve-bin/ChangeLog create mode 100644 sci-chemistry/solve-resolve-bin/ChangeLog-2015 delete mode 100644 sci-chemistry/sparky/ChangeLog create mode 100644 sci-chemistry/sparky/ChangeLog-2015 delete mode 100644 sci-chemistry/suitename/ChangeLog create mode 100644 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a/sci-chemistry/GromacsWrapper/ChangeLog +++ /dev/null @@ -1,24 +0,0 @@ -# ChangeLog for sci-chemistry/GromacsWrapper -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/GromacsWrapper/ChangeLog,v 1.5 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny GromacsWrapper-0.3.1.ebuild: - Drop old Python implementations - -*GromacsWrapper-0.3.2 (13 May 2014) - - 13 May 2014; Justin Lecher +GromacsWrapper-0.3.2.ebuild: - Version Bump - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 26 Mar 2013; Justin Lecher GromacsWrapper-0.3.1.ebuild, - metadata.xml: - Enhance python r1 eclass usage - -*GromacsWrapper-0.3.1 (23 Mar 2013) - - 23 Mar 2013; Alexey Shvetsov +GromacsWrapper-0.3.1.ebuild, - +files/0001-Drop-chmod-hack.patch, +metadata.xml: - Initial import diff --git a/sci-chemistry/GromacsWrapper/ChangeLog-2015 b/sci-chemistry/GromacsWrapper/ChangeLog-2015 new file mode 100644 index 00000000..bb38556b --- /dev/null +++ b/sci-chemistry/GromacsWrapper/ChangeLog-2015 @@ -0,0 +1,24 @@ +# ChangeLog for sci-chemistry/GromacsWrapper +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/GromacsWrapper/ChangeLog,v 1.5 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny GromacsWrapper-0.3.1.ebuild: + Drop old Python implementations + +*GromacsWrapper-0.3.2 (13 May 2014) + + 13 May 2014; Justin Lecher +GromacsWrapper-0.3.2.ebuild: + Version Bump + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 26 Mar 2013; Justin Lecher GromacsWrapper-0.3.1.ebuild, + metadata.xml: + Enhance python r1 eclass usage + +*GromacsWrapper-0.3.1 (23 Mar 2013) + + 23 Mar 2013; Alexey Shvetsov +GromacsWrapper-0.3.1.ebuild, + +files/0001-Drop-chmod-hack.patch, +metadata.xml: + Initial import diff --git a/sci-chemistry/PyMca/ChangeLog b/sci-chemistry/PyMca/ChangeLog deleted file mode 100644 index 121a68f3..00000000 --- a/sci-chemistry/PyMca/ChangeLog +++ /dev/null @@ -1,34 +0,0 @@ -# ChangeLog for sci-chemistry/PyMca -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/PyMca/ChangeLog,v 1.7 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny PyMca-4.6.2-r1.ebuild: - Drop old Python implementations - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - -*PyMca-4.6.2-r1 (13 Feb 2013) - - 13 Feb 2013; Justin Lecher -PyMca-4.4.1_p1.ebuild, - +PyMca-4.6.2-r1.ebuild, metadata.xml: - Move to new python eclasses; drop old - -*PyMca-4.6.2 (28 Oct 2012) - - 28 Oct 2012; Justin Lecher PyMca-4.4.1_p1.ebuild, - +PyMca-4.6.2.ebuild, +files/PyMca-4.6.2-gentoo.patch, metadata.xml: - Version Bump, restrict pypy - - 26 Dec 2010; Justin Lecher +files/4.4.1_p1-impl-dec.patch, - PyMca-4.4.1_p1.ebuild: - Added patch to fix implicit declarations - - 08 Dec 2010; Justin Lecher PyMca-4.4.1_p1.ebuild: - Added missing deps reported 347830 - -*PyMca-4.4.1_p1 (07 Dec 2010) - - 07 Dec 2010; Justin Lecher +files/4.4.1_p1-gentoo.patch, - +PyMca-4.4.1_p1.ebuild, +metadata.xml: - Initial commit, prelimary ebuild made by Nicola diff --git a/sci-chemistry/PyMca/ChangeLog-2015 b/sci-chemistry/PyMca/ChangeLog-2015 new file mode 100644 index 00000000..121a68f3 --- /dev/null +++ b/sci-chemistry/PyMca/ChangeLog-2015 @@ -0,0 +1,34 @@ +# ChangeLog for sci-chemistry/PyMca +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/PyMca/ChangeLog,v 1.7 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny PyMca-4.6.2-r1.ebuild: + Drop old Python implementations + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + +*PyMca-4.6.2-r1 (13 Feb 2013) + + 13 Feb 2013; Justin Lecher -PyMca-4.4.1_p1.ebuild, + +PyMca-4.6.2-r1.ebuild, metadata.xml: + Move to new python eclasses; drop old + +*PyMca-4.6.2 (28 Oct 2012) + + 28 Oct 2012; Justin Lecher PyMca-4.4.1_p1.ebuild, + +PyMca-4.6.2.ebuild, +files/PyMca-4.6.2-gentoo.patch, metadata.xml: + Version Bump, restrict pypy + + 26 Dec 2010; Justin Lecher +files/4.4.1_p1-impl-dec.patch, + PyMca-4.4.1_p1.ebuild: + Added patch to fix implicit declarations + + 08 Dec 2010; Justin Lecher PyMca-4.4.1_p1.ebuild: + Added missing deps reported 347830 + +*PyMca-4.4.1_p1 (07 Dec 2010) + + 07 Dec 2010; Justin Lecher +files/4.4.1_p1-gentoo.patch, + +PyMca-4.4.1_p1.ebuild, +metadata.xml: + Initial commit, prelimary ebuild made by Nicola diff --git a/sci-chemistry/acpype/ChangeLog b/sci-chemistry/acpype/ChangeLog deleted file mode 100644 index 6e31ea2f..00000000 --- a/sci-chemistry/acpype/ChangeLog +++ /dev/null @@ -1,33 +0,0 @@ -# ChangeLog for sci-chemistry/acpype -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/acpype/ChangeLog,v 1.7 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny acpype-389.ebuild: - Drop old Python implementations - - 29 May 2013; Justin Lecher acpype-389.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, - PYTHON_DEPS) - -*acpype-389 (17 May 2013) - - 17 May 2013; Justin Lecher +acpype-389.ebuild, - metadata.xml: - Version Bump - - 15 Feb 2012; Kacper Kowalik acpype-374.ebuild: - Fix SRC_URI - -*acpype-374 (13 Feb 2012) - - 13 Feb 2012; Justin Lecher +acpype-374.ebuild: - Version Bump - - 02 Aug 2011; Alexey Shvetsov acpype-366.ebuild: - Add ~amd64-linux keyword - -*acpype-366 (29 Jul 2011) - - 29 Jul 2011; Alexey Shvetsov +acpype-366.ebuild, - +files/acpype.patch, +metadata.xml: - Initial import diff --git a/sci-chemistry/acpype/ChangeLog-2015 b/sci-chemistry/acpype/ChangeLog-2015 new file mode 100644 index 00000000..6e31ea2f --- /dev/null +++ b/sci-chemistry/acpype/ChangeLog-2015 @@ -0,0 +1,33 @@ +# ChangeLog for sci-chemistry/acpype +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/acpype/ChangeLog,v 1.7 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny acpype-389.ebuild: + Drop old Python implementations + + 29 May 2013; Justin Lecher acpype-389.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, + PYTHON_DEPS) + +*acpype-389 (17 May 2013) + + 17 May 2013; Justin Lecher +acpype-389.ebuild, + metadata.xml: + Version Bump + + 15 Feb 2012; Kacper Kowalik acpype-374.ebuild: + Fix SRC_URI + +*acpype-374 (13 Feb 2012) + + 13 Feb 2012; Justin Lecher +acpype-374.ebuild: + Version Bump + + 02 Aug 2011; Alexey Shvetsov acpype-366.ebuild: + Add ~amd64-linux keyword + +*acpype-366 (29 Jul 2011) + + 29 Jul 2011; Alexey Shvetsov +acpype-366.ebuild, + +files/acpype.patch, +metadata.xml: + Initial import diff --git a/sci-chemistry/ambertools/ChangeLog b/sci-chemistry/ambertools/ChangeLog deleted file mode 100644 index ffedd4bc..00000000 --- a/sci-chemistry/ambertools/ChangeLog +++ /dev/null @@ -1,25 +0,0 @@ -# ChangeLog for sci-chemistry/ambertools -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ambertools/ChangeLog,v 1.5 2013/02/27 16:42:10 jlec Exp $ - - 27 Feb 2013; Justin Lecher ambertools-1.5-r1.ebuild: - Add missing dep on virtual/pkgconfig - - 19 Feb 2013; Justin Lecher ambertools-1.5-r1.ebuild, - metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config - - 19 Oct 2012; Justin Lecher ambertools-1.5-r1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 02 Aug 2011; Alexey Shvetsov ambertools-1.5-r1.ebuild: - Add ~amd64-linux keyword - -*ambertools-1.5-r1 (28 Jul 2011) - - 28 Jul 2011; Alexey Shvetsov +ambertools-1.5-r1.ebuild, - +files/ambertools-1.5-gentoo.patch, +metadata.xml: - Initial import to tree - diff --git a/sci-chemistry/ambertools/ChangeLog-2015 b/sci-chemistry/ambertools/ChangeLog-2015 new file mode 100644 index 00000000..ffedd4bc --- /dev/null +++ b/sci-chemistry/ambertools/ChangeLog-2015 @@ -0,0 +1,25 @@ +# ChangeLog for sci-chemistry/ambertools +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ambertools/ChangeLog,v 1.5 2013/02/27 16:42:10 jlec Exp $ + + 27 Feb 2013; Justin Lecher ambertools-1.5-r1.ebuild: + Add missing dep on virtual/pkgconfig + + 19 Feb 2013; Justin Lecher ambertools-1.5-r1.ebuild, + metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config + + 19 Oct 2012; Justin Lecher ambertools-1.5-r1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 02 Aug 2011; Alexey Shvetsov ambertools-1.5-r1.ebuild: + Add ~amd64-linux keyword + +*ambertools-1.5-r1 (28 Jul 2011) + + 28 Jul 2011; Alexey Shvetsov +ambertools-1.5-r1.ebuild, + +files/ambertools-1.5-gentoo.patch, +metadata.xml: + Initial import to tree + diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog deleted file mode 100644 index a732f4b9..00000000 --- a/sci-chemistry/apbs/ChangeLog +++ /dev/null @@ -1,386 +0,0 @@ -# ChangeLog for sci-chemistry/apbs -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.81 2015/08/07 09:43:37 jlec Exp $ - - 07 Aug 2015; Justin Lecher apbs-1.4.1-r2.ebuild: - Use DISTUTILS_SINGLE_IMPL, hopefully fixing, bug #556916 - - 29 Jul 2015; Patrick Lauer metadata.xml: - Remove unneeded useflag description from metadata.xml - - 28 Jul 2015; Justin Lecher -apbs-1.2.1b-r4.ebuild, - -files/apbs-1.2.0-contrib.patch, -files/apbs-1.2.0-link.patch, - -files/apbs-1.2.1b-autoconf-2.64.patch, -files/apbs-1.2.1b-install-fix.patch, - -files/apbs-1.2.1b-multilib.patch, -files/apbs-1.2.1b-openmp.patch, - -files/apbs-1.2.1b-parallelbuild.patch, -files/apbs-1.2.1b-shared.patch, - -files/apbs-1.3-blas.patch, -files/apbs-1.3-contrib.patch, - -files/apbs-1.3-link.patch, -files/apbs-1.3-mainroutines.patch, - -files/apbs-1.3-openmp.patch, -files/apbs-1.3-python.patch, - -files/apbs-1.3-shared.patch, -files/apbs-1.3-zlib.patch, - -files/apbs-1.3/0001-autoconf-2.68.patch, - -files/apbs-1.3/0002-python-linking.patch, - -files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, - -files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, - -files/apbs-1.3/0005-apbs-1.3-linking.patch, - -files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, - -files/apbs-1.3/0007-apbs-1.3-configure.patch, - -files/apbs-1.3/0008-apbs-1.3-broken-test.patch, - -files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, - -files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, - -files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, - -files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, - -files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, - -files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, - -files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch, - -files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: - Drop old - - 04 Jul 2015; Mikle Kolyada apbs-1.4.1-r2.ebuild: - amd64 stable wrt bug #534692 - - 08 May 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: - ppc stable, bug #534692 - - 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild, - metadata.xml: - Add iapbs USE to correctly trigger project internal dependencies - - 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild: - Disable iAPBS to fix compilation problems, bug #547816 - - 26 Apr 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: - x86 stable wrt bug #534692 - - 22 Jan 2015; Justin Lecher -apbs-1.3-r3.ebuild, - -apbs-1.4.1-r1.ebuild: - Drop old - - 04 Jan 2015; Justin Lecher apbs-1.4.1-r2.ebuild: - Make test use newly build libs - -*apbs-1.4.1-r2 (30 Oct 2014) - - 30 Oct 2014; Justin Lecher +apbs-1.4.1-r2.ebuild: - Remove redundant python dir after installation - - 30 Oct 2014; Justin Lecher apbs-1.4.1-r1.ebuild: - Fix build problems, #527344 - -*apbs-1.4.1-r1 (28 Oct 2014) - - 28 Oct 2014; Justin Lecher -apbs-1.4.1.ebuild, - +apbs-1.4.1-r1.ebuild, files/apbs-1.4.1-manip.patch, - +files/apbs-1.4.1-python.patch: - Link python libs completely - - 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: - Add missing requiered use - - 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: - Add workaround for parallel build issue, #526210 - - 21 Aug 2014; Justin Lecher apbs-1.4.1.ebuild, - +files/apbs-1.4.1-manip.patch, files/apbs-1.4.1-multilib.patch: - Fix build failure with USE=tools, #520126 - -*apbs-1.4.1 (15 Aug 2014) - - 15 Aug 2014; Justin Lecher +apbs-1.4.1.ebuild, - +files/apbs-1.4.1-multilib.patch, metadata.xml: - Version Bump - - 02 May 2013; Justin Lecher apbs-1.3-r3.ebuild: - Fix obsolete macros in automake-1.13 - - 23 Apr 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3-r3.ebuild: - Fix HOMEPAGE - - 27 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3-r3.ebuild: - Add missing dep on virtual/pkgconfig - - 19 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, - metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config - - 19 Oct 2012; Justin Lecher apbs-1.2.1b-r4.ebuild, - -apbs-1.3.ebuild, -apbs-1.3-r1.ebuild, -apbs-1.3-r2.ebuild, - apbs-1.3-r3.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*apbs-1.3-r3 (19 Jul 2012) - - 19 Jul 2012; Justin Lecher +apbs-1.3-r3.ebuild, - +files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: - Fix patching problem which lead to an empty pkg-config file, #425294 - - 25 Apr 2012; Justin Lecher apbs-1.3-r2.ebuild: - Don't run libtoolize twice - - 05 Jan 2012; Justin Lecher apbs-1.3-r1.ebuild, - apbs-1.3-r2.ebuild: - Fix for file collitions - -*apbs-1.3-r2 (04 Jan 2012) - - 04 Jan 2012; Justin Lecher +apbs-1.3-r2.ebuild, - +files/apbs-1.3/0001-autoconf-2.68.patch, - +files/apbs-1.3/0002-python-linking.patch, - +files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, - +files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, - +files/apbs-1.3/0005-apbs-1.3-linking.patch, - +files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, - +files/apbs-1.3/0007-apbs-1.3-configure.patch, - +files/apbs-1.3/0008-apbs-1.3-broken-test.patch, - +files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, - +files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, - +files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, - +files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, - +files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, - +files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, - +files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch: - Rewrite build, rely on pkg-config when possible, move to - autotools-utils.eclass, handle static-libs correctly - - 13 Dec 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3.ebuild, apbs-1.3-r1.ebuild: - Block sci-libs/gts with USE=tools because of file collision on - /usr/bin/smooth, #387689 - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #105599 - - 07 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild: - Fix for atlas detection as blas implementation - - 04 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild, - +files/apbs-1.3-blas.patch: - Fix for blas detection - - 02 Jul 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3.ebuild, apbs-1.3-r1.ebuild, metadata.xml: - Use pkg-config to detect mmdb and lapack libs - - 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3.ebuild, apbs-1.3-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3.ebuild, apbs-1.3-r1.ebuild: - Added fortran-2.eclass support - - 16 Apr 2011; Justin Lecher apbs-1.3.ebuild, - apbs-1.3-r1.ebuild: - Moved to new meta ebuild sci-libs/fetk - - 16 Dec 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, - apbs-1.3.ebuild, apbs-1.3-r1.ebuild: - Removal of fortran.eclass, #348851 - -*apbs-1.3-r1 (04 Nov 2010) - - 04 Nov 2010; Justin Lecher - files/apbs-1.2.1b-multilib.patch, +apbs-1.3-r1.ebuild, - +files/apbs-1.3-python.patch, files/apbs-1.3-shared.patch, - +files/apbs-1.3-zlib.patch: - Fix compilation of python module, fix support for zlib - - 01 Nov 2010; Justin Lecher apbs-1.3.ebuild, - +files/apbs-1.3-mainroutines.patch, files/apbs-1.3-shared.patch, - metadata.xml: - Include support for FETK - - 31 Oct 2010; Justin Lecher apbs-1.3.ebuild: - Make einfo on parallel python and mpi support - -*apbs-1.3 (27 Oct 2010) - - 27 Oct 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, - +apbs-1.3.ebuild, +files/apbs-1.3-contrib.patch, - +files/apbs-1.3-link.patch, +files/apbs-1.3-openmp.patch, - +files/apbs-1.3-shared.patch: - Version Bump, tinker support removed - - 09 Jul 2010; Justin Lecher metadata.xml: - Update metadata.xml - - - 09 Jul 2010; Justin Lecher -apbs-1.0.0-r1.ebuild, - -files/apbs-1.0.0-LDFLAGS.patch, -files/apbs-1.0.0-install-fix.patch, - -files/apbs-1.0.0-libmaloc-noinstall.patch, - -files/apbs-1.0.0-openmpi.patch, -apbs-1.2.1b-r3.ebuild: - Cleaned old after stabilization - - 09 Jul 2010; Christian Faulhammer - apbs-1.2.1b-r4.ebuild: - stable x86, bug 324613 - - 27 Jun 2010; Justin Lecher apbs-1.2.1b-r4.ebuild: - Force LC_NUMERIC to C during test, should fix problem with decimal - seperators - - 27 Jun 2010; apbs-1.2.1b-r4.ebuild: - ppc stable #324613 - - 26 Jun 2010; Christoph Mende apbs-1.2.1b-r4.ebuild: - Stable on amd64 wrt bug #324613 - - 22 Jun 2010; Justin Lecher apbs-1.2.1b-r3.ebuild, - apbs-1.2.1b-r4.ebuild: - Fixed test suite - - 17 Jun 2010; Justin Bronder apbs-1.0.0-r1.ebuild, - apbs-1.2.1b-r3.ebuild, apbs-1.2.1b-r4.ebuild: - Remove lam-mpi handling, see #324415. - -*apbs-1.2.1b-r4 (15 Jun 2010) - - 15 Jun 2010; Kacper Kowalik - +apbs-1.2.1b-r4.ebuild, +files/apbs-1.2.1b-multilib.patch, - files/apbs-1.2.1b-openmp.patch, +files/apbs-1.2.1b-parallelbuild.patch, - +files/apbs-1.2.1b-shared.patch, metadata.xml: - Adding shared libs, fix parallel build, fix install paths on multilib - - 09 Jun 2010; Justin Lecher -apbs-1.2.0.ebuild, - -files/apbs-1.2.0-install-fix.patch, -apbs-1.2.1b.ebuild, - -apbs-1.2.1b-r1.ebuild: - removed old version which having problems with PYTHON ABIs stuff - - 12 May 2010; Justin Lecher (jlec) - apbs-1.2.1b-r3.ebuild: - Added missing fortran_pkg_setup - -*apbs-1.2.1b-r3 (26 Apr 2010) - - 26 Apr 2010; Justin Lecher -apbs-1.2.1b-r2.ebuild, - +apbs-1.2.1b-r3.ebuild: - Wrong usage of python_get_sitedir forces the rev bump - - 25 Apr 2010; Justin Lecher apbs-1.2.1b-r2.ebuild: - Python ABI fixes, #316165 - - 30 Mar 2010; Justin Lecher apbs-1.2.1b-r2.ebuild, - metadata.xml: - Fix for USE="python -tool" situation, #311995 - -*apbs-1.2.1b-r2 (28 Mar 2010) - - 28 Mar 2010; Justin Lecher (jlec) - +apbs-1.2.1b-r2.ebuild, +files/apbs-1.2.1b-install-fix.patch, - +files/apbs-1.2.1b-openmp.patch: - Configure fixes, removed unnecessary installed files. Make tools optional - -*apbs-1.2.1b-r1 (20 Feb 2010) - - 20 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild, - +apbs-1.2.1b-r1.ebuild: - Reverted last change into a new revision - - 18 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild: - EAPI=3, keyworded for {amd64,x86}-linux, made it EPREFIX aware - -*apbs-1.2.1b (04 Dec 2009) - - 04 Dec 2009; Markus Dittrich +apbs-1.2.1b.ebuild, - +files/apbs-1.2.1b-autoconf-2.64.patch: - Version bump and fixed compilation with autoconf 2.64 (fixes bug - #294453 and #295537). - -*apbs-1.2.0 (03 Nov 2009) - - 03 Nov 2009; Markus Dittrich -apbs-0.5.0.ebuild, - -apbs-0.5.1.ebuild, +apbs-1.2.0.ebuild, +files/apbs-1.2.0-contrib.patch, - +files/apbs-1.2.0-install-fix.patch, +files/apbs-1.2.0-link.patch, - -files/apbs-examples-gentoo.patch, -files/apbs-gcc4-gentoo.patch, - metadata.xml: - Version bump (fixes bug #262905) and removed old ebuilds. Currently - missing is opal support (needs keywording by ppc) as well as fetk - support. Thanks much to Justin Lecher for his ebuild. - - 06 May 2009; Markus Meier apbs-1.0.0-r1.ebuild: - amd64/x86 stable, bug #250903 - - 05 Feb 2009; Jeremy Olexa apbs-0.5.0.ebuild, - apbs-0.5.1.ebuild, apbs-1.0.0-r1.ebuild: - (non maintainer commit) [QA] fix HOMEPAGE, bug 256488 - -*apbs-1.0.0-r1 (11 Oct 2008) - - 11 Oct 2008; Markus Dittrich - +files/apbs-1.0.0-LDFLAGS.patch, - files/apbs-1.0.0-install-fix.patch, -apbs-1.0.0.ebuild, - +apbs-1.0.0-r1.ebuild: - Version bump to pull in updated patch fixing bad install location - for docs (see bug #241316). Added patch for ignored LDFLAGS. - -*apbs-1.0.0 (29 Apr 2008) - - 29 Apr 2008; Markus Dittrich - +files/apbs-1.0.0-install-fix.patch, - +files/apbs-1.0.0-libmaloc-noinstall.patch, - +files/apbs-1.0.0-openmpi.patch, +apbs-1.0.0.ebuild: - Version bump (fixes bug #219599). Changed license to BSD since - it most closely matches the apbs license. - - 23 Mar 2008; Markus Dittrich apbs-0.5.1.ebuild: - Changed to unversioned install location in /usr/share (see bug #213616). - - 12 Jan 2008; Markus Dittrich apbs-0.5.1.ebuild: - Fixed improper link path for libapbsblas.a (fixes bug #205310). - - 31 Jul 2007; Jeff Gardner -apbs-0.4.0.ebuild: - Removing unused version/files. - - 18 Jul 2007; Jeff Gardner ChangeLog: - Add apbs-0.5.1 which includes many bugfixes and new features. - - 24 Feb 2007; Jeff Gardner apbs-0.5.0.ebuild: - Cleanup apbs-0.5.0.ebuild. - -*apbs-0.5.0 (23 Feb 2007) - - 23 Feb 2007; Jeff Gardner +apbs-0.5.0.ebuild: - Add apbs-0.5.0 with Big Thanks(tm) to Stephen Floor. - - 06 Jan 2007; Danny van Dyk -apbs-0.3.2.ebuild: - QA: Removed unused versions. - - 12 Oct 2006; Jeff Gardner ; apbs-0.4.0.ebuild: - Keyword ~amd64 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 16 Sep 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: - Keyword ~ppc. - - 07 Jul 2006; Donnie Berkholz ; ChangeLog: - Update to my new email address. - - 31 May 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: - Fix crackrock SRC_URI, reported by Brian Harring. - - 23 May 2006; Markus Dittrich - +files/apbs-gcc4-gentoo.patch, apbs-0.4.0.ebuild: - Added patch to enable compilation with gcc-4.1. - - 27 Apr 2006; Alec Warner files/digest-apbs-0.3.2, - Manifest: - Fixing SHA256 digest, pass four - -*apbs-0.4.0 (08 Mar 2006) - - 08 Mar 2006; Markus Dittrich +apbs-0.4.0.ebuild, +apbs-examples-gentoo.patch: - Version bump. Thanks to je_fro for the ebuild - (see bug #124793). - - 13 Dec 2005; Markus Dittrich metadata.xml: - marked apbs-0.3.2.ebuild as ~x86 - -*apbs-0.3.2 (20 Oct 2005) - - 20 Oct 2005; Olivier Fisette +metadata.xml, - +apbs-0.3.2.ebuild: - Initial import. Thanks to Markus Dittrich for his work. diff --git a/sci-chemistry/apbs/ChangeLog-2015 b/sci-chemistry/apbs/ChangeLog-2015 new file mode 100644 index 00000000..a732f4b9 --- /dev/null +++ b/sci-chemistry/apbs/ChangeLog-2015 @@ -0,0 +1,386 @@ +# ChangeLog for sci-chemistry/apbs +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.81 2015/08/07 09:43:37 jlec Exp $ + + 07 Aug 2015; Justin Lecher apbs-1.4.1-r2.ebuild: + Use DISTUTILS_SINGLE_IMPL, hopefully fixing, bug #556916 + + 29 Jul 2015; Patrick Lauer metadata.xml: + Remove unneeded useflag description from metadata.xml + + 28 Jul 2015; Justin Lecher -apbs-1.2.1b-r4.ebuild, + -files/apbs-1.2.0-contrib.patch, -files/apbs-1.2.0-link.patch, + -files/apbs-1.2.1b-autoconf-2.64.patch, -files/apbs-1.2.1b-install-fix.patch, + -files/apbs-1.2.1b-multilib.patch, -files/apbs-1.2.1b-openmp.patch, + -files/apbs-1.2.1b-parallelbuild.patch, -files/apbs-1.2.1b-shared.patch, + -files/apbs-1.3-blas.patch, -files/apbs-1.3-contrib.patch, + -files/apbs-1.3-link.patch, -files/apbs-1.3-mainroutines.patch, + -files/apbs-1.3-openmp.patch, -files/apbs-1.3-python.patch, + -files/apbs-1.3-shared.patch, -files/apbs-1.3-zlib.patch, + -files/apbs-1.3/0001-autoconf-2.68.patch, + -files/apbs-1.3/0002-python-linking.patch, + -files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, + -files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, + -files/apbs-1.3/0005-apbs-1.3-linking.patch, + -files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, + -files/apbs-1.3/0007-apbs-1.3-configure.patch, + -files/apbs-1.3/0008-apbs-1.3-broken-test.patch, + -files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, + -files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, + -files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, + -files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, + -files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, + -files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, + -files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch, + -files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: + Drop old + + 04 Jul 2015; Mikle Kolyada apbs-1.4.1-r2.ebuild: + amd64 stable wrt bug #534692 + + 08 May 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: + ppc stable, bug #534692 + + 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild, + metadata.xml: + Add iapbs USE to correctly trigger project internal dependencies + + 08 May 2015; Justin Lecher apbs-1.4.1-r2.ebuild: + Disable iAPBS to fix compilation problems, bug #547816 + + 26 Apr 2015; Pacho Ramos apbs-1.4.1-r2.ebuild: + x86 stable wrt bug #534692 + + 22 Jan 2015; Justin Lecher -apbs-1.3-r3.ebuild, + -apbs-1.4.1-r1.ebuild: + Drop old + + 04 Jan 2015; Justin Lecher apbs-1.4.1-r2.ebuild: + Make test use newly build libs + +*apbs-1.4.1-r2 (30 Oct 2014) + + 30 Oct 2014; Justin Lecher +apbs-1.4.1-r2.ebuild: + Remove redundant python dir after installation + + 30 Oct 2014; Justin Lecher apbs-1.4.1-r1.ebuild: + Fix build problems, #527344 + +*apbs-1.4.1-r1 (28 Oct 2014) + + 28 Oct 2014; Justin Lecher -apbs-1.4.1.ebuild, + +apbs-1.4.1-r1.ebuild, files/apbs-1.4.1-manip.patch, + +files/apbs-1.4.1-python.patch: + Link python libs completely + + 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: + Add missing requiered use + + 24 Oct 2014; Justin Lecher apbs-1.4.1.ebuild: + Add workaround for parallel build issue, #526210 + + 21 Aug 2014; Justin Lecher apbs-1.4.1.ebuild, + +files/apbs-1.4.1-manip.patch, files/apbs-1.4.1-multilib.patch: + Fix build failure with USE=tools, #520126 + +*apbs-1.4.1 (15 Aug 2014) + + 15 Aug 2014; Justin Lecher +apbs-1.4.1.ebuild, + +files/apbs-1.4.1-multilib.patch, metadata.xml: + Version Bump + + 02 May 2013; Justin Lecher apbs-1.3-r3.ebuild: + Fix obsolete macros in automake-1.13 + + 23 Apr 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3-r3.ebuild: + Fix HOMEPAGE + + 27 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3-r3.ebuild: + Add missing dep on virtual/pkgconfig + + 19 Feb 2013; Justin Lecher apbs-1.2.1b-r4.ebuild, + metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config + + 19 Oct 2012; Justin Lecher apbs-1.2.1b-r4.ebuild, + -apbs-1.3.ebuild, -apbs-1.3-r1.ebuild, -apbs-1.3-r2.ebuild, + apbs-1.3-r3.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*apbs-1.3-r3 (19 Jul 2012) + + 19 Jul 2012; Justin Lecher +apbs-1.3-r3.ebuild, + +files/apbs-1.3/0016-apbs-1.3-apbs.pc-in-AC_CONFIG_FILES.patch: + Fix patching problem which lead to an empty pkg-config file, #425294 + + 25 Apr 2012; Justin Lecher apbs-1.3-r2.ebuild: + Don't run libtoolize twice + + 05 Jan 2012; Justin Lecher apbs-1.3-r1.ebuild, + apbs-1.3-r2.ebuild: + Fix for file collitions + +*apbs-1.3-r2 (04 Jan 2012) + + 04 Jan 2012; Justin Lecher +apbs-1.3-r2.ebuild, + +files/apbs-1.3/0001-autoconf-2.68.patch, + +files/apbs-1.3/0002-python-linking.patch, + +files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch, + +files/apbs-1.3/0004-apbs-1.3-system-zlib.patch, + +files/apbs-1.3/0005-apbs-1.3-linking.patch, + +files/apbs-1.3/0006-apbs-1.3-clean-targets.patch, + +files/apbs-1.3/0007-apbs-1.3-configure.patch, + +files/apbs-1.3/0008-apbs-1.3-broken-test.patch, + +files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch, + +files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch, + +files/apbs-1.3/0011-apbs-1.3-shared-linking.patch, + +files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch, + +files/apbs-1.3/0013-apbs-1.3-tools-installation.patch, + +files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch, + +files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch: + Rewrite build, rely on pkg-config when possible, move to + autotools-utils.eclass, handle static-libs correctly + + 13 Dec 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3.ebuild, apbs-1.3-r1.ebuild: + Block sci-libs/gts with USE=tools because of file collision on + /usr/bin/smooth, #387689 + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #105599 + + 07 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild: + Fix for atlas detection as blas implementation + + 04 Jul 2011; Justin Lecher apbs-1.3-r1.ebuild, + +files/apbs-1.3-blas.patch: + Fix for blas detection + + 02 Jul 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3.ebuild, apbs-1.3-r1.ebuild, metadata.xml: + Use pkg-config to detect mmdb and lapack libs + + 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3.ebuild, apbs-1.3-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3.ebuild, apbs-1.3-r1.ebuild: + Added fortran-2.eclass support + + 16 Apr 2011; Justin Lecher apbs-1.3.ebuild, + apbs-1.3-r1.ebuild: + Moved to new meta ebuild sci-libs/fetk + + 16 Dec 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, + apbs-1.3.ebuild, apbs-1.3-r1.ebuild: + Removal of fortran.eclass, #348851 + +*apbs-1.3-r1 (04 Nov 2010) + + 04 Nov 2010; Justin Lecher + files/apbs-1.2.1b-multilib.patch, +apbs-1.3-r1.ebuild, + +files/apbs-1.3-python.patch, files/apbs-1.3-shared.patch, + +files/apbs-1.3-zlib.patch: + Fix compilation of python module, fix support for zlib + + 01 Nov 2010; Justin Lecher apbs-1.3.ebuild, + +files/apbs-1.3-mainroutines.patch, files/apbs-1.3-shared.patch, + metadata.xml: + Include support for FETK + + 31 Oct 2010; Justin Lecher apbs-1.3.ebuild: + Make einfo on parallel python and mpi support + +*apbs-1.3 (27 Oct 2010) + + 27 Oct 2010; Justin Lecher apbs-1.2.1b-r4.ebuild, + +apbs-1.3.ebuild, +files/apbs-1.3-contrib.patch, + +files/apbs-1.3-link.patch, +files/apbs-1.3-openmp.patch, + +files/apbs-1.3-shared.patch: + Version Bump, tinker support removed + + 09 Jul 2010; Justin Lecher metadata.xml: + Update metadata.xml + + + 09 Jul 2010; Justin Lecher -apbs-1.0.0-r1.ebuild, + -files/apbs-1.0.0-LDFLAGS.patch, -files/apbs-1.0.0-install-fix.patch, + -files/apbs-1.0.0-libmaloc-noinstall.patch, + -files/apbs-1.0.0-openmpi.patch, -apbs-1.2.1b-r3.ebuild: + Cleaned old after stabilization + + 09 Jul 2010; Christian Faulhammer + apbs-1.2.1b-r4.ebuild: + stable x86, bug 324613 + + 27 Jun 2010; Justin Lecher apbs-1.2.1b-r4.ebuild: + Force LC_NUMERIC to C during test, should fix problem with decimal + seperators + + 27 Jun 2010; apbs-1.2.1b-r4.ebuild: + ppc stable #324613 + + 26 Jun 2010; Christoph Mende apbs-1.2.1b-r4.ebuild: + Stable on amd64 wrt bug #324613 + + 22 Jun 2010; Justin Lecher apbs-1.2.1b-r3.ebuild, + apbs-1.2.1b-r4.ebuild: + Fixed test suite + + 17 Jun 2010; Justin Bronder apbs-1.0.0-r1.ebuild, + apbs-1.2.1b-r3.ebuild, apbs-1.2.1b-r4.ebuild: + Remove lam-mpi handling, see #324415. + +*apbs-1.2.1b-r4 (15 Jun 2010) + + 15 Jun 2010; Kacper Kowalik + +apbs-1.2.1b-r4.ebuild, +files/apbs-1.2.1b-multilib.patch, + files/apbs-1.2.1b-openmp.patch, +files/apbs-1.2.1b-parallelbuild.patch, + +files/apbs-1.2.1b-shared.patch, metadata.xml: + Adding shared libs, fix parallel build, fix install paths on multilib + + 09 Jun 2010; Justin Lecher -apbs-1.2.0.ebuild, + -files/apbs-1.2.0-install-fix.patch, -apbs-1.2.1b.ebuild, + -apbs-1.2.1b-r1.ebuild: + removed old version which having problems with PYTHON ABIs stuff + + 12 May 2010; Justin Lecher (jlec) + apbs-1.2.1b-r3.ebuild: + Added missing fortran_pkg_setup + +*apbs-1.2.1b-r3 (26 Apr 2010) + + 26 Apr 2010; Justin Lecher -apbs-1.2.1b-r2.ebuild, + +apbs-1.2.1b-r3.ebuild: + Wrong usage of python_get_sitedir forces the rev bump + + 25 Apr 2010; Justin Lecher apbs-1.2.1b-r2.ebuild: + Python ABI fixes, #316165 + + 30 Mar 2010; Justin Lecher apbs-1.2.1b-r2.ebuild, + metadata.xml: + Fix for USE="python -tool" situation, #311995 + +*apbs-1.2.1b-r2 (28 Mar 2010) + + 28 Mar 2010; Justin Lecher (jlec) + +apbs-1.2.1b-r2.ebuild, +files/apbs-1.2.1b-install-fix.patch, + +files/apbs-1.2.1b-openmp.patch: + Configure fixes, removed unnecessary installed files. Make tools optional + +*apbs-1.2.1b-r1 (20 Feb 2010) + + 20 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild, + +apbs-1.2.1b-r1.ebuild: + Reverted last change into a new revision + + 18 Feb 2010; Justin Lecher (jlec) apbs-1.2.1b.ebuild: + EAPI=3, keyworded for {amd64,x86}-linux, made it EPREFIX aware + +*apbs-1.2.1b (04 Dec 2009) + + 04 Dec 2009; Markus Dittrich +apbs-1.2.1b.ebuild, + +files/apbs-1.2.1b-autoconf-2.64.patch: + Version bump and fixed compilation with autoconf 2.64 (fixes bug + #294453 and #295537). + +*apbs-1.2.0 (03 Nov 2009) + + 03 Nov 2009; Markus Dittrich -apbs-0.5.0.ebuild, + -apbs-0.5.1.ebuild, +apbs-1.2.0.ebuild, +files/apbs-1.2.0-contrib.patch, + +files/apbs-1.2.0-install-fix.patch, +files/apbs-1.2.0-link.patch, + -files/apbs-examples-gentoo.patch, -files/apbs-gcc4-gentoo.patch, + metadata.xml: + Version bump (fixes bug #262905) and removed old ebuilds. Currently + missing is opal support (needs keywording by ppc) as well as fetk + support. Thanks much to Justin Lecher for his ebuild. + + 06 May 2009; Markus Meier apbs-1.0.0-r1.ebuild: + amd64/x86 stable, bug #250903 + + 05 Feb 2009; Jeremy Olexa apbs-0.5.0.ebuild, + apbs-0.5.1.ebuild, apbs-1.0.0-r1.ebuild: + (non maintainer commit) [QA] fix HOMEPAGE, bug 256488 + +*apbs-1.0.0-r1 (11 Oct 2008) + + 11 Oct 2008; Markus Dittrich + +files/apbs-1.0.0-LDFLAGS.patch, + files/apbs-1.0.0-install-fix.patch, -apbs-1.0.0.ebuild, + +apbs-1.0.0-r1.ebuild: + Version bump to pull in updated patch fixing bad install location + for docs (see bug #241316). Added patch for ignored LDFLAGS. + +*apbs-1.0.0 (29 Apr 2008) + + 29 Apr 2008; Markus Dittrich + +files/apbs-1.0.0-install-fix.patch, + +files/apbs-1.0.0-libmaloc-noinstall.patch, + +files/apbs-1.0.0-openmpi.patch, +apbs-1.0.0.ebuild: + Version bump (fixes bug #219599). Changed license to BSD since + it most closely matches the apbs license. + + 23 Mar 2008; Markus Dittrich apbs-0.5.1.ebuild: + Changed to unversioned install location in /usr/share (see bug #213616). + + 12 Jan 2008; Markus Dittrich apbs-0.5.1.ebuild: + Fixed improper link path for libapbsblas.a (fixes bug #205310). + + 31 Jul 2007; Jeff Gardner -apbs-0.4.0.ebuild: + Removing unused version/files. + + 18 Jul 2007; Jeff Gardner ChangeLog: + Add apbs-0.5.1 which includes many bugfixes and new features. + + 24 Feb 2007; Jeff Gardner apbs-0.5.0.ebuild: + Cleanup apbs-0.5.0.ebuild. + +*apbs-0.5.0 (23 Feb 2007) + + 23 Feb 2007; Jeff Gardner +apbs-0.5.0.ebuild: + Add apbs-0.5.0 with Big Thanks(tm) to Stephen Floor. + + 06 Jan 2007; Danny van Dyk -apbs-0.3.2.ebuild: + QA: Removed unused versions. + + 12 Oct 2006; Jeff Gardner ; apbs-0.4.0.ebuild: + Keyword ~amd64 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 16 Sep 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: + Keyword ~ppc. + + 07 Jul 2006; Donnie Berkholz ; ChangeLog: + Update to my new email address. + + 31 May 2006; Donnie Berkholz ; apbs-0.4.0.ebuild: + Fix crackrock SRC_URI, reported by Brian Harring. + + 23 May 2006; Markus Dittrich + +files/apbs-gcc4-gentoo.patch, apbs-0.4.0.ebuild: + Added patch to enable compilation with gcc-4.1. + + 27 Apr 2006; Alec Warner files/digest-apbs-0.3.2, + Manifest: + Fixing SHA256 digest, pass four + +*apbs-0.4.0 (08 Mar 2006) + + 08 Mar 2006; Markus Dittrich +apbs-0.4.0.ebuild, +apbs-examples-gentoo.patch: + Version bump. Thanks to je_fro for the ebuild + (see bug #124793). + + 13 Dec 2005; Markus Dittrich metadata.xml: + marked apbs-0.3.2.ebuild as ~x86 + +*apbs-0.3.2 (20 Oct 2005) + + 20 Oct 2005; Olivier Fisette +metadata.xml, + +apbs-0.3.2.ebuild: + Initial import. Thanks to Markus Dittrich for his work. diff --git a/sci-chemistry/aqua/ChangeLog b/sci-chemistry/aqua/ChangeLog deleted file mode 100644 index d9f8f912..00000000 --- a/sci-chemistry/aqua/ChangeLog +++ /dev/null @@ -1,39 +0,0 @@ -# ChangeLog for sci-chemistry/aqua -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aqua/ChangeLog,v 1.8 2012/10/19 09:38:53 jlec Exp $ - - 19 Oct 2012; Justin Lecher aqua-3.2-r2.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher aqua-3.2-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher aqua-3.2-r2.ebuild: - Added fortran-2.eclass support - - 21 Mar 2011; Justin Lecher aqua-3.2-r2.ebuild: - Fix for parallel make, #359801 - -*aqua-3.2-r2 (16 Nov 2010) - - 16 Nov 2010; Justin Lecher -aqua-3.2-r1.ebuild, - +aqua-3.2-r2.ebuild: - Corrected usage of system tools - -*aqua-3.2-r1 (19 Jul 2010) - - 19 Jul 2010; Justin Lecher -aqua-3.2.ebuild, - +aqua-3.2-r1.ebuild: - Fix exchange of nawk to gawk - - 19 Jul 2010; Justin Lecher aqua-3.2.ebuild: - Cleaned SRC_URI - -*aqua-3.2 (18 Jul 2010) - - 18 Jul 2010; Justin Lecher +files/3.2-flags.patch, - +aqua-3.2.ebuild, +metadata.xml: - New addition - diff --git a/sci-chemistry/aqua/ChangeLog-2015 b/sci-chemistry/aqua/ChangeLog-2015 new file mode 100644 index 00000000..d9f8f912 --- /dev/null +++ b/sci-chemistry/aqua/ChangeLog-2015 @@ -0,0 +1,39 @@ +# ChangeLog for sci-chemistry/aqua +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aqua/ChangeLog,v 1.8 2012/10/19 09:38:53 jlec Exp $ + + 19 Oct 2012; Justin Lecher aqua-3.2-r2.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher aqua-3.2-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher aqua-3.2-r2.ebuild: + Added fortran-2.eclass support + + 21 Mar 2011; Justin Lecher aqua-3.2-r2.ebuild: + Fix for parallel make, #359801 + +*aqua-3.2-r2 (16 Nov 2010) + + 16 Nov 2010; Justin Lecher -aqua-3.2-r1.ebuild, + +aqua-3.2-r2.ebuild: + Corrected usage of system tools + +*aqua-3.2-r1 (19 Jul 2010) + + 19 Jul 2010; Justin Lecher -aqua-3.2.ebuild, + +aqua-3.2-r1.ebuild: + Fix exchange of nawk to gawk + + 19 Jul 2010; Justin Lecher aqua-3.2.ebuild: + Cleaned SRC_URI + +*aqua-3.2 (18 Jul 2010) + + 18 Jul 2010; Justin Lecher +files/3.2-flags.patch, + +aqua-3.2.ebuild, +metadata.xml: + New addition + diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog deleted file mode 100644 index f4fbe64d..00000000 --- a/sci-chemistry/aria/ChangeLog +++ /dev/null @@ -1,107 +0,0 @@ -# ChangeLog for sci-chemistry/aria -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.26 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny aria-2.3.2_p20130826.ebuild: - Drop old Python implementations - - 26 Apr 2014; Justin Lecher -aria-2.3.2-r3.ebuild: - Drop old, #508740 - - 06 Jan 2014; Justin Lecher aria-2.3.2-r3.ebuild: - Punt base.eclass - - 06 Jan 2014; Justin Lecher -aria-2.3.2-r4.ebuild, - -aria-2.3.2-r5.ebuild, aria-2.3.2_p20130826.ebuild: - Drop old; punt base.eclass - -*aria-2.3.2_p20130826 (09 Oct 2013) - - 09 Oct 2013; Justin Lecher +aria-2.3.2_p20130826.ebuild: - Version Bump - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 29 May 2013; Justin Lecher aria-2.3.2-r5.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) - -*aria-2.3.2-r5 (14 May 2013) - - 14 May 2013; Justin Lecher +aria-2.3.2-r5.ebuild: - Version Bump - - 17 Jan 2013; Justin Lecher aria-2.3.2-r4.ebuild: - Help to find tarball - -*aria-2.3.2-r4 (11 Jan 2013) - - 11 Jan 2013; Justin Lecher +aria-2.3.2-r4.ebuild, - metadata.xml: - Version bump - - 10 Jul 2012; Justin Lecher -aria-2.3.1.ebuild, - -aria-2.3.2.ebuild, -aria-2.3.2-r1.ebuild, -aria-2.3.2-r2.ebuild: - Drop old - - 10 Jul 2012; Jeff Horelick aria-2.3.2-r3.ebuild: - marked x86 per bug 419885 - - 12 Jun 2012; Agostino Sarubbo aria-2.3.2-r3.ebuild: - Stable for amd64, wrt bug #419885 - -*aria-2.3.2-r3 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +aria-2.3.2-r3.ebuild, - +files/aria-2.3.2-through-space-2.patch: - Added latest correction to through-space patch needed for global name - 'excludeSimulated' is not defined - -*aria-2.3.2-r2 (11 Oct 2011) - - 11 Oct 2011; Justin Lecher +aria-2.3.2-r2.ebuild, - +files/aria-2.3.2-python.patch: - Added fix for python import - -*aria-2.3.2-r1 (07 Oct 2011) - - 07 Oct 2011; Justin Lecher +aria-2.3.2-r1.ebuild, - +files/aria-2.3.2-through-space.patch: - Add patches for newer ccpn data model, kindly provided by Tim Stevens - - 30 Aug 2011; Justin Lecher aria-2.3.2.ebuild: - Corrected dep version of cns so that new changes are present - -*aria-2.3.2 (29 Aug 2011) - - 29 Aug 2011; Justin Lecher aria-2.3.1.ebuild, - +aria-2.3.2.ebuild, metadata.xml: - Version Bump sci-chemistry/aria-2.3.2, 379153 - - 18 Nov 2010; Justin Lecher -files/2.2_p2-numpy.patch, - -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild: - Dropped old - - 22 Jul 2010; Justin Lecher aria-2.3.1.ebuild: - Added clashscore as DEP - - 19 Jul 2010; Justin Lecher aria-2.3.1.ebuild: - Fixed DEPS - - 04 Apr 2010; Justin Lecher Manifest: - distfile digest fix - -*aria-2.3.1 (20 Mar 2010) - - 20 Mar 2010; Justin Lecher (jlec) +aria-2.3.1.ebuild: - Version Bump - - 07 Mar 2010; Justin Lecher (jlec) aria-2.2_p2.ebuild: - keyworded for *-linux, tested by me - -*aria-2.2_p2 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/2.2_p2-numpy.patch, +aria-2.2_p2.ebuild, +files/2.2_p2-test.patch, - +files/sa_ls_cool2.patch, +metadata.xml: - Initial commit diff --git a/sci-chemistry/aria/ChangeLog-2015 b/sci-chemistry/aria/ChangeLog-2015 new file mode 100644 index 00000000..f4fbe64d --- /dev/null +++ b/sci-chemistry/aria/ChangeLog-2015 @@ -0,0 +1,107 @@ +# ChangeLog for sci-chemistry/aria +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.26 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny aria-2.3.2_p20130826.ebuild: + Drop old Python implementations + + 26 Apr 2014; Justin Lecher -aria-2.3.2-r3.ebuild: + Drop old, #508740 + + 06 Jan 2014; Justin Lecher aria-2.3.2-r3.ebuild: + Punt base.eclass + + 06 Jan 2014; Justin Lecher -aria-2.3.2-r4.ebuild, + -aria-2.3.2-r5.ebuild, aria-2.3.2_p20130826.ebuild: + Drop old; punt base.eclass + +*aria-2.3.2_p20130826 (09 Oct 2013) + + 09 Oct 2013; Justin Lecher +aria-2.3.2_p20130826.ebuild: + Version Bump + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 29 May 2013; Justin Lecher aria-2.3.2-r5.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) + +*aria-2.3.2-r5 (14 May 2013) + + 14 May 2013; Justin Lecher +aria-2.3.2-r5.ebuild: + Version Bump + + 17 Jan 2013; Justin Lecher aria-2.3.2-r4.ebuild: + Help to find tarball + +*aria-2.3.2-r4 (11 Jan 2013) + + 11 Jan 2013; Justin Lecher +aria-2.3.2-r4.ebuild, + metadata.xml: + Version bump + + 10 Jul 2012; Justin Lecher -aria-2.3.1.ebuild, + -aria-2.3.2.ebuild, -aria-2.3.2-r1.ebuild, -aria-2.3.2-r2.ebuild: + Drop old + + 10 Jul 2012; Jeff Horelick aria-2.3.2-r3.ebuild: + marked x86 per bug 419885 + + 12 Jun 2012; Agostino Sarubbo aria-2.3.2-r3.ebuild: + Stable for amd64, wrt bug #419885 + +*aria-2.3.2-r3 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +aria-2.3.2-r3.ebuild, + +files/aria-2.3.2-through-space-2.patch: + Added latest correction to through-space patch needed for global name + 'excludeSimulated' is not defined + +*aria-2.3.2-r2 (11 Oct 2011) + + 11 Oct 2011; Justin Lecher +aria-2.3.2-r2.ebuild, + +files/aria-2.3.2-python.patch: + Added fix for python import + +*aria-2.3.2-r1 (07 Oct 2011) + + 07 Oct 2011; Justin Lecher +aria-2.3.2-r1.ebuild, + +files/aria-2.3.2-through-space.patch: + Add patches for newer ccpn data model, kindly provided by Tim Stevens + + 30 Aug 2011; Justin Lecher aria-2.3.2.ebuild: + Corrected dep version of cns so that new changes are present + +*aria-2.3.2 (29 Aug 2011) + + 29 Aug 2011; Justin Lecher aria-2.3.1.ebuild, + +aria-2.3.2.ebuild, metadata.xml: + Version Bump sci-chemistry/aria-2.3.2, 379153 + + 18 Nov 2010; Justin Lecher -files/2.2_p2-numpy.patch, + -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild: + Dropped old + + 22 Jul 2010; Justin Lecher aria-2.3.1.ebuild: + Added clashscore as DEP + + 19 Jul 2010; Justin Lecher aria-2.3.1.ebuild: + Fixed DEPS + + 04 Apr 2010; Justin Lecher Manifest: + distfile digest fix + +*aria-2.3.1 (20 Mar 2010) + + 20 Mar 2010; Justin Lecher (jlec) +aria-2.3.1.ebuild: + Version Bump + + 07 Mar 2010; Justin Lecher (jlec) aria-2.2_p2.ebuild: + keyworded for *-linux, tested by me + +*aria-2.2_p2 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/2.2_p2-numpy.patch, +aria-2.2_p2.ebuild, +files/2.2_p2-test.patch, + +files/sa_ls_cool2.patch, +metadata.xml: + Initial commit diff --git a/sci-chemistry/arp-warp-bin/ChangeLog b/sci-chemistry/arp-warp-bin/ChangeLog deleted file mode 100644 index a9847a4d..00000000 --- a/sci-chemistry/arp-warp-bin/ChangeLog +++ /dev/null @@ -1,113 +0,0 @@ -# ChangeLog for sci-chemistry/arp-warp-bin -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v 1.26 2015/03/11 13:31:52 jlec Exp $ - -*arp-warp-bin-7.5 (11 Mar 2015) - - 11 Mar 2015; Justin Lecher +arp-warp-bin-7.5.ebuild, - -arp-warp-bin-7.1-r1.ebuild, -arp-warp-bin-7.1-r2.ebuild, - -arp-warp-bin-7.3.ebuild, -files/7.1-setup-2.patch, -files/7.1-setup.patch: - Version Bump; Drop old with unavailable upstream sources, #542758 - - 04 Jun 2013; Justin Lecher arp-warp-bin-7.1-r2.ebuild: - Fix for correct usage of new python eclasses - -*arp-warp-bin-7.3 (01 Jun 2013) - - 01 Jun 2013; Justin Lecher +arp-warp-bin-7.3.ebuild, - +files/7.3-setup.patch: - Version Bump - -*arp-warp-bin-7.1-r2 (01 Jun 2013) - - 01 Jun 2013; Justin Lecher +arp-warp-bin-7.1-r2.ebuild, - +files/7.1-setup-2.patch: - Bump to new python r1 eclasses - - 06 Feb 2013; Justin Lecher arp-warp-bin-7.1-r1.ebuild, - metadata.xml: - Loosen awk dependency from gawk to virtual/awk, #455682 - - 24 Jul 2012; Justin Lecher arp-warp-bin-7.1-r1.ebuild: - Use QA_PREBUILT for binary packages - - 05 Jun 2012; Justin Lecher arp-warp-bin-7.1-r1.ebuild: - Stable Package for x86 - - 04 Jun 2012; Justin Lecher -arp-warp-bin-7.1.ebuild, - arp-warp-bin-7.1-r1.ebuild: - Drop old, keyword for x86, add QA_PREBUILT - - 14 Apr 2012; Andreas Schuerch arp-warp-bin-7.1.ebuild: - x86 stable, see bug 376417 - - 24 Dec 2011; Justin Lecher arp-warp-bin-7.1.ebuild, - arp-warp-bin-7.1-r1.ebuild: - Correct dep from sci-chemistry/ccp4 to sci-chemistry/refmac - -*arp-warp-bin-7.1-r1 (26 Nov 2011) - - 26 Nov 2011; Justin Lecher arp-warp-bin-7.1.ebuild, - +arp-warp-bin-7.1-r1.ebuild: - Drop exit from source script; If present in the script, but package files are - not present, you cannot log in anymore. - - 16 Oct 2011; Samuli Suominen arp-warp-bin-7.1.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen arp-warp-bin-7.1.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon arp-warp-bin-7.1.ebuild: - Marked stable on AMD64 based on arch testing by Ian "idella4" Delaney in bug - #376417. - - 25 Jul 2011; Justin Lecher arp-warp-bin-7.1.ebuild: - Reverted keywording - - 21 Jul 2011; Justin Lecher arp-warp-bin-7.1.ebuild, - metadata.xml: - Stabilizing myself as it has fetch restriction. Works here. - - 11 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: - PREFIX everything - - 10 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: - Keyworded for *-linux - - 10 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: - QA on ebuild style - - 22 May 2010; Justin Lecher arp-warp-bin-7.1.ebuild: - Removed epause in EAPI=3 ebuilds - - 22 Apr 2010; Justin Lecher -files/7.0.1-setup.patch, - -files/7.0.1-source-ccp4-if-needed.patch, files/7.1-setup.patch, - arp-warp-bin-7.1.ebuild: - Fixes for Python ABIs, #316167 - -*arp-warp-bin-7.1 (20 Mar 2010) - - 20 Mar 2010; Justin Lecher - +files/7.1-setup.patch, -arp-warp-bin-7.0.1-r2.ebuild, - +arp-warp-bin-7.1.ebuild: - Version bump per 309845 - -*arp-warp-bin-7.0.1-r2 (25 Feb 2010) - - 25 Feb 2010; Justin Lecher - files/7.0.1-setup.patch, -arp-warp-bin-7.0.1-r1.ebuild, - files/7.0.1-source-ccp4-if-needed.patch, +arp-warp-bin-7.0.1-r2.ebuild: - Handle ccp4 installation correctly - - 07 Feb 2010; Justin Lecher - arp-warp-bin-7.0.1-r1.ebuild: - Updated RDEP to >ccp4-6.1.3 to have things in profile.d sorted correctly - -*arp-warp-bin-7.0.1-r1 (04 Aug 2008) - - 04 Aug 2008; Donnie Berkholz ; - +files/7.0.1-setup.patch, +files/7.0.1-source-ccp4-if-needed.patch, - +metadata.xml, +arp-warp-bin-7.0.1-r1.ebuild: - (#212054) New package: ARP/wARP is a software for improvement and - interpretation of crystallographic electron density maps. diff --git a/sci-chemistry/arp-warp-bin/ChangeLog-2015 b/sci-chemistry/arp-warp-bin/ChangeLog-2015 new file mode 100644 index 00000000..a9847a4d --- /dev/null +++ b/sci-chemistry/arp-warp-bin/ChangeLog-2015 @@ -0,0 +1,113 @@ +# ChangeLog for sci-chemistry/arp-warp-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/arp-warp-bin/ChangeLog,v 1.26 2015/03/11 13:31:52 jlec Exp $ + +*arp-warp-bin-7.5 (11 Mar 2015) + + 11 Mar 2015; Justin Lecher +arp-warp-bin-7.5.ebuild, + -arp-warp-bin-7.1-r1.ebuild, -arp-warp-bin-7.1-r2.ebuild, + -arp-warp-bin-7.3.ebuild, -files/7.1-setup-2.patch, -files/7.1-setup.patch: + Version Bump; Drop old with unavailable upstream sources, #542758 + + 04 Jun 2013; Justin Lecher arp-warp-bin-7.1-r2.ebuild: + Fix for correct usage of new python eclasses + +*arp-warp-bin-7.3 (01 Jun 2013) + + 01 Jun 2013; Justin Lecher +arp-warp-bin-7.3.ebuild, + +files/7.3-setup.patch: + Version Bump + +*arp-warp-bin-7.1-r2 (01 Jun 2013) + + 01 Jun 2013; Justin Lecher +arp-warp-bin-7.1-r2.ebuild, + +files/7.1-setup-2.patch: + Bump to new python r1 eclasses + + 06 Feb 2013; Justin Lecher arp-warp-bin-7.1-r1.ebuild, + metadata.xml: + Loosen awk dependency from gawk to virtual/awk, #455682 + + 24 Jul 2012; Justin Lecher arp-warp-bin-7.1-r1.ebuild: + Use QA_PREBUILT for binary packages + + 05 Jun 2012; Justin Lecher arp-warp-bin-7.1-r1.ebuild: + Stable Package for x86 + + 04 Jun 2012; Justin Lecher -arp-warp-bin-7.1.ebuild, + arp-warp-bin-7.1-r1.ebuild: + Drop old, keyword for x86, add QA_PREBUILT + + 14 Apr 2012; Andreas Schuerch arp-warp-bin-7.1.ebuild: + x86 stable, see bug 376417 + + 24 Dec 2011; Justin Lecher arp-warp-bin-7.1.ebuild, + arp-warp-bin-7.1-r1.ebuild: + Correct dep from sci-chemistry/ccp4 to sci-chemistry/refmac + +*arp-warp-bin-7.1-r1 (26 Nov 2011) + + 26 Nov 2011; Justin Lecher arp-warp-bin-7.1.ebuild, + +arp-warp-bin-7.1-r1.ebuild: + Drop exit from source script; If present in the script, but package files are + not present, you cannot log in anymore. + + 16 Oct 2011; Samuli Suominen arp-warp-bin-7.1.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen arp-warp-bin-7.1.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon arp-warp-bin-7.1.ebuild: + Marked stable on AMD64 based on arch testing by Ian "idella4" Delaney in bug + #376417. + + 25 Jul 2011; Justin Lecher arp-warp-bin-7.1.ebuild: + Reverted keywording + + 21 Jul 2011; Justin Lecher arp-warp-bin-7.1.ebuild, + metadata.xml: + Stabilizing myself as it has fetch restriction. Works here. + + 11 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: + PREFIX everything + + 10 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: + Keyworded for *-linux + + 10 Jan 2011; Justin Lecher arp-warp-bin-7.1.ebuild: + QA on ebuild style + + 22 May 2010; Justin Lecher arp-warp-bin-7.1.ebuild: + Removed epause in EAPI=3 ebuilds + + 22 Apr 2010; Justin Lecher -files/7.0.1-setup.patch, + -files/7.0.1-source-ccp4-if-needed.patch, files/7.1-setup.patch, + arp-warp-bin-7.1.ebuild: + Fixes for Python ABIs, #316167 + +*arp-warp-bin-7.1 (20 Mar 2010) + + 20 Mar 2010; Justin Lecher + +files/7.1-setup.patch, -arp-warp-bin-7.0.1-r2.ebuild, + +arp-warp-bin-7.1.ebuild: + Version bump per 309845 + +*arp-warp-bin-7.0.1-r2 (25 Feb 2010) + + 25 Feb 2010; Justin Lecher + files/7.0.1-setup.patch, -arp-warp-bin-7.0.1-r1.ebuild, + files/7.0.1-source-ccp4-if-needed.patch, +arp-warp-bin-7.0.1-r2.ebuild: + Handle ccp4 installation correctly + + 07 Feb 2010; Justin Lecher + arp-warp-bin-7.0.1-r1.ebuild: + Updated RDEP to >ccp4-6.1.3 to have things in profile.d sorted correctly + +*arp-warp-bin-7.0.1-r1 (04 Aug 2008) + + 04 Aug 2008; Donnie Berkholz ; + +files/7.0.1-setup.patch, +files/7.0.1-source-ccp4-if-needed.patch, + +metadata.xml, +arp-warp-bin-7.0.1-r1.ebuild: + (#212054) New package: ARP/wARP is a software for improvement and + interpretation of crystallographic electron density maps. diff --git a/sci-chemistry/autodock/ChangeLog b/sci-chemistry/autodock/ChangeLog deleted file mode 100644 index 54068ae1..00000000 --- a/sci-chemistry/autodock/ChangeLog +++ /dev/null @@ -1,53 +0,0 @@ -# ChangeLog for sci-chemistry/autodock -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.11 2015/04/13 08:02:47 jlec Exp $ - - 13 Apr 2015; Justin Lecher -autodock-4.2.3-r1.ebuild: - Drop old - -*autodock-4.2.6 (13 Mar 2015) - - 13 Mar 2015; Justin Lecher +autodock-4.2.6.ebuild, - +files/autodock-4.2.6-buildsystem.patch, autodock-4.2.3-r1.ebuild, - metadata.xml: - Version Bump; Move to new python eclasses - - 26 Jun 2011; Justin Lecher autodock-4.2.3-r1.ebuild: - Straight out QA issues - -*autodock-4.2.3-r1 (25 Jun 2010) - - 25 Jun 2010; Justin Lecher -autodock-4.0.1.ebuild, - -autodock-4.0.1-r1.ebuild, -autodock-4.2.3.ebuild, - +autodock-4.2.3-r1.ebuild: - Fixed installation issue when csh is not present, #303463; fix src_test, - #320345; removed old, fixed PYTHON ABIs stuff - -*autodock-4.2.3 (04 Feb 2010) - - 04 Feb 2010; Alexey Shvetsov +autodock-4.2.3.ebuild: - Version bump per bug #300834 - - 24 Mar 2009; Olivier Fisette metadata.xml: - Giving up maintainership of this package. - - 05 Aug 2008; Donnie Berkholz ; - +files/4.0.1-gcc-4.3.patch, autodock-4.0.1-r1.ebuild: - Fix for gcc 4.3. - -*autodock-4.0.1-r1 (26 Jun 2007) - - 26 Jun 2007; Olivier Fisette - +autodock-4.0.1-r1.ebuild: - Install documentation and parameter files. Added test suite. Ebuild clean-up. - - 21 Jun 2007; Olivier Fisette autodock-4.0.1.ebuild: - Added a notice and URL to encourage Gentoo users to register as AutoDock - users for grant application purposes. - -*autodock-4.0.1 (19 Jun 2007) - - 19 Jun 2007; Olivier Fisette +metadata.xml, - +autodock-4.0.1.ebuild: - Initial import. Thanks to Luc Grenier for his - ebuild and for testing the package. diff --git a/sci-chemistry/autodock/ChangeLog-2015 b/sci-chemistry/autodock/ChangeLog-2015 new file mode 100644 index 00000000..54068ae1 --- /dev/null +++ b/sci-chemistry/autodock/ChangeLog-2015 @@ -0,0 +1,53 @@ +# ChangeLog for sci-chemistry/autodock +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.11 2015/04/13 08:02:47 jlec Exp $ + + 13 Apr 2015; Justin Lecher -autodock-4.2.3-r1.ebuild: + Drop old + +*autodock-4.2.6 (13 Mar 2015) + + 13 Mar 2015; Justin Lecher +autodock-4.2.6.ebuild, + +files/autodock-4.2.6-buildsystem.patch, autodock-4.2.3-r1.ebuild, + metadata.xml: + Version Bump; Move to new python eclasses + + 26 Jun 2011; Justin Lecher autodock-4.2.3-r1.ebuild: + Straight out QA issues + +*autodock-4.2.3-r1 (25 Jun 2010) + + 25 Jun 2010; Justin Lecher -autodock-4.0.1.ebuild, + -autodock-4.0.1-r1.ebuild, -autodock-4.2.3.ebuild, + +autodock-4.2.3-r1.ebuild: + Fixed installation issue when csh is not present, #303463; fix src_test, + #320345; removed old, fixed PYTHON ABIs stuff + +*autodock-4.2.3 (04 Feb 2010) + + 04 Feb 2010; Alexey Shvetsov +autodock-4.2.3.ebuild: + Version bump per bug #300834 + + 24 Mar 2009; Olivier Fisette metadata.xml: + Giving up maintainership of this package. + + 05 Aug 2008; Donnie Berkholz ; + +files/4.0.1-gcc-4.3.patch, autodock-4.0.1-r1.ebuild: + Fix for gcc 4.3. + +*autodock-4.0.1-r1 (26 Jun 2007) + + 26 Jun 2007; Olivier Fisette + +autodock-4.0.1-r1.ebuild: + Install documentation and parameter files. Added test suite. Ebuild clean-up. + + 21 Jun 2007; Olivier Fisette autodock-4.0.1.ebuild: + Added a notice and URL to encourage Gentoo users to register as AutoDock + users for grant application purposes. + +*autodock-4.0.1 (19 Jun 2007) + + 19 Jun 2007; Olivier Fisette +metadata.xml, + +autodock-4.0.1.ebuild: + Initial import. Thanks to Luc Grenier for his + ebuild and for testing the package. diff --git a/sci-chemistry/autodock_vina/ChangeLog b/sci-chemistry/autodock_vina/ChangeLog deleted file mode 100644 index c44d831c..00000000 --- a/sci-chemistry/autodock_vina/ChangeLog +++ /dev/null @@ -1,50 +0,0 @@ -# ChangeLog for sci-chemistry/autodock_vina -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock_vina/ChangeLog,v 1.11 2013/08/19 12:55:11 jlec Exp $ - - 19 Aug 2013; Justin Lecher -autodock_vina-1.1.1-r1.ebuild: - Drop old fixes problems with boost-1.52, #460264 - - 18 Aug 2013; Agostino Sarubbo autodock_vina-1.1.2.ebuild: - Stable for x86, wrt bug #480626 - - 14 Aug 2013; Justin Lecher autodock_vina-1.1.2.ebuild, - metadata.xml: - Add missing die, thanks nimiux spotting this - - 14 Aug 2013; Chema Alonso autodock_vina-1.1.2.ebuild: - Stable for amd64 wrt bug #480626 - - 07 Nov 2012; Justin Lecher autodock_vina-1.1.2.ebuild, - +files/autodock_vina-1.1.2-boost-filesystem.patch: - Fix for boost >1.50, #425458 - - 28 Jan 2012; Pawel Hajdan jr - autodock_vina-1.1.1-r1.ebuild: - x86 stable wrt bug #399625 - - 22 Jan 2012; Agostino Sarubbo autodock_vina-1.1.1-r1.ebuild: - Stable for amd64, wrt bug #399625 - -*autodock_vina-1.1.2 (21 Jan 2012) - - 21 Jan 2012; Justin Lecher +files/1.1.2-gentoo.patch, - +autodock_vina-1.1.2.ebuild, metadata.xml: - Version Bump, #399289 - - 06 Apr 2011; Justin Lecher autodock_vina-1.1.1-r1.ebuild: - Fix compilation problem with =dev-libs/boost-1.46, #362243; thanks few and - xarthisius - -*autodock_vina-1.1.1-r1 (11 Aug 2010) - - 11 Aug 2010; Justin Lecher files/1.1.1-gentoo.patch, - -autodock_vina-1.1.1.ebuild, +autodock_vina-1.1.1-r1.ebuild: - Stop mixing CFLAGS and CXXFLAGS, stop using upstream flags, thanks - dberkholz pointing this out - -*autodock_vina-1.1.1 (18 May 2010) - - 18 May 2010; Justin Lecher +files/1.1.1-gentoo.patch, - +autodock_vina-1.1.1.ebuild, +metadata.xml: - Initial addition diff --git a/sci-chemistry/autodock_vina/ChangeLog-2015 b/sci-chemistry/autodock_vina/ChangeLog-2015 new file mode 100644 index 00000000..c44d831c --- /dev/null +++ b/sci-chemistry/autodock_vina/ChangeLog-2015 @@ -0,0 +1,50 @@ +# ChangeLog for sci-chemistry/autodock_vina +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock_vina/ChangeLog,v 1.11 2013/08/19 12:55:11 jlec Exp $ + + 19 Aug 2013; Justin Lecher -autodock_vina-1.1.1-r1.ebuild: + Drop old fixes problems with boost-1.52, #460264 + + 18 Aug 2013; Agostino Sarubbo autodock_vina-1.1.2.ebuild: + Stable for x86, wrt bug #480626 + + 14 Aug 2013; Justin Lecher autodock_vina-1.1.2.ebuild, + metadata.xml: + Add missing die, thanks nimiux spotting this + + 14 Aug 2013; Chema Alonso autodock_vina-1.1.2.ebuild: + Stable for amd64 wrt bug #480626 + + 07 Nov 2012; Justin Lecher autodock_vina-1.1.2.ebuild, + +files/autodock_vina-1.1.2-boost-filesystem.patch: + Fix for boost >1.50, #425458 + + 28 Jan 2012; Pawel Hajdan jr + autodock_vina-1.1.1-r1.ebuild: + x86 stable wrt bug #399625 + + 22 Jan 2012; Agostino Sarubbo autodock_vina-1.1.1-r1.ebuild: + Stable for amd64, wrt bug #399625 + +*autodock_vina-1.1.2 (21 Jan 2012) + + 21 Jan 2012; Justin Lecher +files/1.1.2-gentoo.patch, + +autodock_vina-1.1.2.ebuild, metadata.xml: + Version Bump, #399289 + + 06 Apr 2011; Justin Lecher autodock_vina-1.1.1-r1.ebuild: + Fix compilation problem with =dev-libs/boost-1.46, #362243; thanks few and + xarthisius + +*autodock_vina-1.1.1-r1 (11 Aug 2010) + + 11 Aug 2010; Justin Lecher files/1.1.1-gentoo.patch, + -autodock_vina-1.1.1.ebuild, +autodock_vina-1.1.1-r1.ebuild: + Stop mixing CFLAGS and CXXFLAGS, stop using upstream flags, thanks + dberkholz pointing this out + +*autodock_vina-1.1.1 (18 May 2010) + + 18 May 2010; Justin Lecher +files/1.1.1-gentoo.patch, + +autodock_vina-1.1.1.ebuild, +metadata.xml: + Initial addition diff --git a/sci-chemistry/avogadro/ChangeLog b/sci-chemistry/avogadro/ChangeLog deleted file mode 100644 index 1c53cb87..00000000 --- a/sci-chemistry/avogadro/ChangeLog +++ /dev/null @@ -1,237 +0,0 @@ -# ChangeLog for sci-chemistry/avogadro -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/avogadro/ChangeLog,v 1.52 2015/06/29 07:35:49 jlec Exp $ - - 29 Jun 2015; Justin Lecher avogadro-1.0.3-r2.ebuild: - Drop ppc64 due to revdep breakage - - 11 May 2015; Justin Lecher - +files/avogadro-1.1.0-xlibs.patch, avogadro-1.1.0.ebuild: - Add patch to fix underlinking, thanks Tom Daff preparing the patch, bug - #547400 - - 08 Apr 2015; Michał Górny avogadro-1.0.3-r2.ebuild, - avogadro-1.1.0.ebuild: - Drop old Python implementations - - 29 Jan 2015; Michał Górny avogadro-1.0.3-r2.ebuild, - avogadro-1.1.0.ebuild: - Convert to CPU_FLAGS_X86. - -*avogadro-1.0.3-r2 (06 Jan 2014) - - 06 Jan 2014; Justin Lecher -avogadro-1.0.3-r1.ebuild, - +avogadro-1.0.3-r2.ebuild, avogadro-1.1.0.ebuild: - Punt base.eclass; bump to python-single-r1.eclass - - 02 Mar 2013; Markos Chandras avogadro-1.0.3-r1.ebuild, - avogadro-1.1.0.ebuild: - Move Qt dependencies to the new category - - 23 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild: - Add ~ppc64, wrt bug #455960 - - 20 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild, - avogadro-1.1.0.ebuild: - Add ~arm, wrt bug #455960 - - 13 Feb 2013; Justin Lecher - files/avogadro-1.1.0-textrel.patch: - Add pcc* to the texrel patch consumer - - 13 Feb 2013; Justin Lecher - files/avogadro-1.1.0-textrel.patch, metadata.xml: - add another missing fPIC, #446548; thanks Oldrich Jedlicka and Todd Goodman - for the patch - - 08 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild: - Add ~ppc, wrt bug #455960 - -*avogadro-1.1.0 (06 Dec 2012) - - 06 Dec 2012; Justin Lecher +avogadro-1.1.0.ebuild, - +files/avogadro-1.1.0-textrel.patch, metadata.xml: - Version Bump prepared by Reinis Danne, #439436; fixes build with latest - boost, #406267 - -*avogadro-1.0.3-r1 (14 Aug 2011) - - 14 Aug 2011; Alexey Shvetsov - -files/avogadro-0.9.7-shader-include.patch, -avogadro-1.0.0.ebuild, - -files/avogadro-1.0.0-sip-4.10.patch, -avogadro-1.0.1.ebuild, - -files/avogadro-1.0.1-sip-backport.patch, -avogadro-1.0.3.ebuild, - +avogadro-1.0.3-r1.ebuild: - Drop old versions and make it respect qt_mkspec - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #70723 - - 28 Apr 2011; Tomáš Chvátal avogadro-1.0.3.ebuild: - Cleanup the cmake-utils usage. - - 27 Apr 2011; Justin Lecher avogadro-1.0.0.ebuild, - avogadro-1.0.1.ebuild, avogadro-1.0.3.ebuild: - Add USE=sse2 - -*avogadro-1.0.3 (26 Apr 2011) - - 26 Apr 2011; Justin Lecher -avogadro-0.9.8.ebuild, - -avogadro-0.9.9.ebuild, -avogadro-1.0.2_rc1.ebuild, +avogadro-1.0.3.ebuild: - Version Bump, cleaned old - -*avogadro-1.0.2_rc1 (26 Mar 2011) - - 26 Mar 2011; Justin Lecher +avogadro-1.0.2_rc1.ebuild: - Version Bump - - 26 Mar 2011; Justin Lecher avogadro-1.0.1.ebuild, - +files/avogadro-1.0.1-sip-backport.patch: - Backported sip patch from 1.0.2_rc1, #335644 - -*avogadro-1.0.1 (21 May 2010) - - 21 May 2010; Justin Lecher +files/1.0.1-gl2ps.patch, - avogadro-0.9.8.ebuild, avogadro-0.9.9.ebuild, avogadro-1.0.0.ebuild, - +avogadro-1.0.1.ebuild: - Version Bump, unbundle gl2ps, fix for PYTHON ABI #316169 - - 25 Feb 2010; Fabio Erculiani avogadro-1.0.0.ebuild, - +files/avogadro-1.0.0-sip-4.10.patch: - fix compilation with sip 4.10, thanks to Victor Yu. Kowalsky and - Kacper Kowalik for reporting, close bug #303703 - -*avogadro-1.0.0 (23 Oct 2009) - - 23 Oct 2009; Marcus D. Hanwell +avogadro-1.0.0.ebuild: - Version bump - first stable release of Avogadro. - -*avogadro-0.9.9 (20 Oct 2009) - - 20 Oct 2009; Marcus D. Hanwell -avogadro-0.9.7.ebuild, - +avogadro-0.9.9.ebuild: - Version bump, removed old version. - - 10 Sep 2009; Marcus D. Hanwell -avogadro-0.9.6.ebuild: - Removed old version. - -*avogadro-0.9.8 (10 Sep 2009) - - 10 Sep 2009; Marcus D. Hanwell +avogadro-0.9.8.ebuild: - Version bump. - - 02 Aug 2009; Marcus D. Hanwell avogadro-0.9.7.ebuild, - +files/avogadro-0.9.7-shader-include.patch: - Small patch to remove the unnecessary config.h include in the shader - plugin, bug 277251. - - 25 Jul 2009; Marcus D. Hanwell avogadro-0.9.7.ebuild: - Tidied up boost dep, Avogadro will not compile with older boost versions. - -*avogadro-0.9.7 (18 Jul 2009) - - 18 Jul 2009; Marcus D. Hanwell -avogadro-0.9.4.ebuild, - -avogadro-0.9.5.ebuild, +avogadro-0.9.7.ebuild: - Version bump, pruned old versions. - -*avogadro-0.9.6 (24 Jun 2009) - - 24 Jun 2009; Marcus D. Hanwell +avogadro-0.9.6.ebuild: - Version bump. - -*avogadro-0.9.5 (02 Jun 2009) - - 02 Jun 2009; Marcus D. Hanwell -avogadro-0.9.3.ebuild, - +avogadro-0.9.5.ebuild: - Version bump. - -*avogadro-0.9.4 (02 May 2009) - - 02 May 2009; Marcus D. Hanwell -avogadro-0.9.2.ebuild, - +avogadro-0.9.4.ebuild: - Version bump. - - 30 Apr 2009; Patrick Lauer avogadro-0.9.3.ebuild: - Small fix to boost depends to be future-proof - - 30 Apr 2009; Patrick Lauer avogadro-0.9.3.ebuild: - Adding dev-python/sip to deps for #267224. Should really fix python deps - now. Again. - - 27 Apr 2009; Patrick Lauer avogadro-0.9.3: - Fixing python deps to include numpy. Fixes #267224. Will need - boost[python] deps for newer versions of boost. - -*avogadro-0.9.3 (01 Apr 2009) - - 01 Apr 2009; Marcus D. Hanwell +avogadro-0.9.3.ebuild: - Version bump. - -*avogadro-0.9.2 (01 Mar 2009) - - 01 Mar 2009; Marcus D. Hanwell - -files/avogadro-0.8.1-openbabel-2.2.0.patch, -avogadro-0.6.1.ebuild, - -avogadro-0.8.0.ebuild, -avogadro-0.8.1.ebuild, -avogadro-0.9.1.ebuild, - +avogadro-0.9.2.ebuild: - Version bump, new version fixes bug 259643. Removed old versions. - -*avogadro-0.9.1 (17 Feb 2009) - - 17 Feb 2009; Tomas Chvatal metadata.xml, - +avogadro-0.9.1.ebuild: - Version bump. Fixes bug #257785. - - 22 Sep 2008; Markus Dittrich avogadro-0.8.1.ebuild: - Changed Qt dependency to version 4.3.4 or newer (fixes bug #237543). - - 12 Aug 2008; Ben de Groot avogadro-0.6.1.ebuild, - avogadro-0.8.0.ebuild, avogadro-0.8.1.ebuild: - Fix split qt4 deps wrt bug 217161. - -*avogadro-0.8.1 (10 Jul 2008) - - 10 Jul 2008; Markus Dittrich - +files/avogadro-0.8.1-openbabel-2.2.0.patch, +avogadro-0.8.1.ebuild: - Version bump and fixed compile issue due to openbabel-2.2.0 API change - (see bug #231173). - - 21 May 2008; Marcus D. Hanwell avogadro-0.8.0.ebuild: - Bumped dependency to cmake-2.4.8. Should fix bug 222947. - -*avogadro-0.8.0 (19 May 2008) - - 19 May 2008; Marcus D. Hanwell -avogadro-0.2.0.ebuild, - -avogadro-0.6.0.ebuild, +avogadro-0.8.0.ebuild: - Version bump. Removed old versions. - -*avogadro-0.6.1 (09 Mar 2008) - - 09 Mar 2008; Marcus D. Hanwell +avogadro-0.6.1.ebuild: - Version bump. - -*avogadro-0.6.0 (01 Mar 2008) - - 01 Mar 2008; Marcus D. Hanwell +avogadro-0.6.0.ebuild: - Version bump. - - 10 Dec 2007; Marcus D. Hanwell -avogadro-0.1.0.ebuild, - avogadro-0.2.0.ebuild: - Removed old version, updated to use release build type. - -*avogadro-0.2.0 (23 Oct 2007) - - 23 Oct 2007; Marcus D. Hanwell +avogadro-0.2.0.ebuild: - Version bump. - - 01 Jul 2007; Piotr Jaroszyński - +files/digest-avogadro-0.1.0, Manifest: - (QA) Add digests. - - 29 Jun 2007; Christian Faulhammer - avogadro-0.1.0.ebuild: - keyworded ~x86, bug 182986 - -*avogadro-0.1.0 (17 May 2007) - - 17 May 2007; Marcus D. Hanwell +metadata.xml, - +avogadro-0.1.0.ebuild: - Initial import. diff --git a/sci-chemistry/avogadro/ChangeLog-2015 b/sci-chemistry/avogadro/ChangeLog-2015 new file mode 100644 index 00000000..1c53cb87 --- /dev/null +++ b/sci-chemistry/avogadro/ChangeLog-2015 @@ -0,0 +1,237 @@ +# ChangeLog for sci-chemistry/avogadro +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/avogadro/ChangeLog,v 1.52 2015/06/29 07:35:49 jlec Exp $ + + 29 Jun 2015; Justin Lecher avogadro-1.0.3-r2.ebuild: + Drop ppc64 due to revdep breakage + + 11 May 2015; Justin Lecher + +files/avogadro-1.1.0-xlibs.patch, avogadro-1.1.0.ebuild: + Add patch to fix underlinking, thanks Tom Daff preparing the patch, bug + #547400 + + 08 Apr 2015; Michał Górny avogadro-1.0.3-r2.ebuild, + avogadro-1.1.0.ebuild: + Drop old Python implementations + + 29 Jan 2015; Michał Górny avogadro-1.0.3-r2.ebuild, + avogadro-1.1.0.ebuild: + Convert to CPU_FLAGS_X86. + +*avogadro-1.0.3-r2 (06 Jan 2014) + + 06 Jan 2014; Justin Lecher -avogadro-1.0.3-r1.ebuild, + +avogadro-1.0.3-r2.ebuild, avogadro-1.1.0.ebuild: + Punt base.eclass; bump to python-single-r1.eclass + + 02 Mar 2013; Markos Chandras avogadro-1.0.3-r1.ebuild, + avogadro-1.1.0.ebuild: + Move Qt dependencies to the new category + + 23 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild: + Add ~ppc64, wrt bug #455960 + + 20 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild, + avogadro-1.1.0.ebuild: + Add ~arm, wrt bug #455960 + + 13 Feb 2013; Justin Lecher + files/avogadro-1.1.0-textrel.patch: + Add pcc* to the texrel patch consumer + + 13 Feb 2013; Justin Lecher + files/avogadro-1.1.0-textrel.patch, metadata.xml: + add another missing fPIC, #446548; thanks Oldrich Jedlicka and Todd Goodman + for the patch + + 08 Feb 2013; Agostino Sarubbo avogadro-1.0.3-r1.ebuild: + Add ~ppc, wrt bug #455960 + +*avogadro-1.1.0 (06 Dec 2012) + + 06 Dec 2012; Justin Lecher +avogadro-1.1.0.ebuild, + +files/avogadro-1.1.0-textrel.patch, metadata.xml: + Version Bump prepared by Reinis Danne, #439436; fixes build with latest + boost, #406267 + +*avogadro-1.0.3-r1 (14 Aug 2011) + + 14 Aug 2011; Alexey Shvetsov + -files/avogadro-0.9.7-shader-include.patch, -avogadro-1.0.0.ebuild, + -files/avogadro-1.0.0-sip-4.10.patch, -avogadro-1.0.1.ebuild, + -files/avogadro-1.0.1-sip-backport.patch, -avogadro-1.0.3.ebuild, + +avogadro-1.0.3-r1.ebuild: + Drop old versions and make it respect qt_mkspec + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #70723 + + 28 Apr 2011; Tomáš Chvátal avogadro-1.0.3.ebuild: + Cleanup the cmake-utils usage. + + 27 Apr 2011; Justin Lecher avogadro-1.0.0.ebuild, + avogadro-1.0.1.ebuild, avogadro-1.0.3.ebuild: + Add USE=sse2 + +*avogadro-1.0.3 (26 Apr 2011) + + 26 Apr 2011; Justin Lecher -avogadro-0.9.8.ebuild, + -avogadro-0.9.9.ebuild, -avogadro-1.0.2_rc1.ebuild, +avogadro-1.0.3.ebuild: + Version Bump, cleaned old + +*avogadro-1.0.2_rc1 (26 Mar 2011) + + 26 Mar 2011; Justin Lecher +avogadro-1.0.2_rc1.ebuild: + Version Bump + + 26 Mar 2011; Justin Lecher avogadro-1.0.1.ebuild, + +files/avogadro-1.0.1-sip-backport.patch: + Backported sip patch from 1.0.2_rc1, #335644 + +*avogadro-1.0.1 (21 May 2010) + + 21 May 2010; Justin Lecher +files/1.0.1-gl2ps.patch, + avogadro-0.9.8.ebuild, avogadro-0.9.9.ebuild, avogadro-1.0.0.ebuild, + +avogadro-1.0.1.ebuild: + Version Bump, unbundle gl2ps, fix for PYTHON ABI #316169 + + 25 Feb 2010; Fabio Erculiani avogadro-1.0.0.ebuild, + +files/avogadro-1.0.0-sip-4.10.patch: + fix compilation with sip 4.10, thanks to Victor Yu. Kowalsky and + Kacper Kowalik for reporting, close bug #303703 + +*avogadro-1.0.0 (23 Oct 2009) + + 23 Oct 2009; Marcus D. Hanwell +avogadro-1.0.0.ebuild: + Version bump - first stable release of Avogadro. + +*avogadro-0.9.9 (20 Oct 2009) + + 20 Oct 2009; Marcus D. Hanwell -avogadro-0.9.7.ebuild, + +avogadro-0.9.9.ebuild: + Version bump, removed old version. + + 10 Sep 2009; Marcus D. Hanwell -avogadro-0.9.6.ebuild: + Removed old version. + +*avogadro-0.9.8 (10 Sep 2009) + + 10 Sep 2009; Marcus D. Hanwell +avogadro-0.9.8.ebuild: + Version bump. + + 02 Aug 2009; Marcus D. Hanwell avogadro-0.9.7.ebuild, + +files/avogadro-0.9.7-shader-include.patch: + Small patch to remove the unnecessary config.h include in the shader + plugin, bug 277251. + + 25 Jul 2009; Marcus D. Hanwell avogadro-0.9.7.ebuild: + Tidied up boost dep, Avogadro will not compile with older boost versions. + +*avogadro-0.9.7 (18 Jul 2009) + + 18 Jul 2009; Marcus D. Hanwell -avogadro-0.9.4.ebuild, + -avogadro-0.9.5.ebuild, +avogadro-0.9.7.ebuild: + Version bump, pruned old versions. + +*avogadro-0.9.6 (24 Jun 2009) + + 24 Jun 2009; Marcus D. Hanwell +avogadro-0.9.6.ebuild: + Version bump. + +*avogadro-0.9.5 (02 Jun 2009) + + 02 Jun 2009; Marcus D. Hanwell -avogadro-0.9.3.ebuild, + +avogadro-0.9.5.ebuild: + Version bump. + +*avogadro-0.9.4 (02 May 2009) + + 02 May 2009; Marcus D. Hanwell -avogadro-0.9.2.ebuild, + +avogadro-0.9.4.ebuild: + Version bump. + + 30 Apr 2009; Patrick Lauer avogadro-0.9.3.ebuild: + Small fix to boost depends to be future-proof + + 30 Apr 2009; Patrick Lauer avogadro-0.9.3.ebuild: + Adding dev-python/sip to deps for #267224. Should really fix python deps + now. Again. + + 27 Apr 2009; Patrick Lauer avogadro-0.9.3: + Fixing python deps to include numpy. Fixes #267224. Will need + boost[python] deps for newer versions of boost. + +*avogadro-0.9.3 (01 Apr 2009) + + 01 Apr 2009; Marcus D. Hanwell +avogadro-0.9.3.ebuild: + Version bump. + +*avogadro-0.9.2 (01 Mar 2009) + + 01 Mar 2009; Marcus D. Hanwell + -files/avogadro-0.8.1-openbabel-2.2.0.patch, -avogadro-0.6.1.ebuild, + -avogadro-0.8.0.ebuild, -avogadro-0.8.1.ebuild, -avogadro-0.9.1.ebuild, + +avogadro-0.9.2.ebuild: + Version bump, new version fixes bug 259643. Removed old versions. + +*avogadro-0.9.1 (17 Feb 2009) + + 17 Feb 2009; Tomas Chvatal metadata.xml, + +avogadro-0.9.1.ebuild: + Version bump. Fixes bug #257785. + + 22 Sep 2008; Markus Dittrich avogadro-0.8.1.ebuild: + Changed Qt dependency to version 4.3.4 or newer (fixes bug #237543). + + 12 Aug 2008; Ben de Groot avogadro-0.6.1.ebuild, + avogadro-0.8.0.ebuild, avogadro-0.8.1.ebuild: + Fix split qt4 deps wrt bug 217161. + +*avogadro-0.8.1 (10 Jul 2008) + + 10 Jul 2008; Markus Dittrich + +files/avogadro-0.8.1-openbabel-2.2.0.patch, +avogadro-0.8.1.ebuild: + Version bump and fixed compile issue due to openbabel-2.2.0 API change + (see bug #231173). + + 21 May 2008; Marcus D. Hanwell avogadro-0.8.0.ebuild: + Bumped dependency to cmake-2.4.8. Should fix bug 222947. + +*avogadro-0.8.0 (19 May 2008) + + 19 May 2008; Marcus D. Hanwell -avogadro-0.2.0.ebuild, + -avogadro-0.6.0.ebuild, +avogadro-0.8.0.ebuild: + Version bump. Removed old versions. + +*avogadro-0.6.1 (09 Mar 2008) + + 09 Mar 2008; Marcus D. Hanwell +avogadro-0.6.1.ebuild: + Version bump. + +*avogadro-0.6.0 (01 Mar 2008) + + 01 Mar 2008; Marcus D. Hanwell +avogadro-0.6.0.ebuild: + Version bump. + + 10 Dec 2007; Marcus D. Hanwell -avogadro-0.1.0.ebuild, + avogadro-0.2.0.ebuild: + Removed old version, updated to use release build type. + +*avogadro-0.2.0 (23 Oct 2007) + + 23 Oct 2007; Marcus D. Hanwell +avogadro-0.2.0.ebuild: + Version bump. + + 01 Jul 2007; Piotr Jaroszyński + +files/digest-avogadro-0.1.0, Manifest: + (QA) Add digests. + + 29 Jun 2007; Christian Faulhammer + avogadro-0.1.0.ebuild: + keyworded ~x86, bug 182986 + +*avogadro-0.1.0 (17 May 2007) + + 17 May 2007; Marcus D. Hanwell +metadata.xml, + +avogadro-0.1.0.ebuild: + Initial import. diff --git a/sci-chemistry/azara/ChangeLog b/sci-chemistry/azara/ChangeLog deleted file mode 100644 index 8d903c74..00000000 --- a/sci-chemistry/azara/ChangeLog +++ /dev/null @@ -1,80 +0,0 @@ -# ChangeLog for sci-chemistry/azara -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/azara/ChangeLog,v 1.16 2015/04/08 18:22:14 mgorny Exp $ - - 08 Apr 2015; Michał Górny azara-2.8-r5.ebuild: - Drop old Python implementations - - 06 Jul 2014; Justin Lecher azara-2.8-r4.ebuild, - azara-2.8-r5.ebuild: - Add missing dep on x11-libs/motif, #515000 - - 16 Oct 2013; Justin Lecher azara-2.8-r5.ebuild: - Use python_xport correctly - - 15 Oct 2013; Justin Lecher azara-2.8-r5.ebuild: - USe eclass in cleaner way - -*azara-2.8-r5 (15 Oct 2013) - - 15 Oct 2013; Justin Lecher +azara-2.8-r5.ebuild, - metadata.xml: - Move to new python r1 eclasses - - 25 Feb 2012; Patrick Lauer azara-2.8-r4.ebuild: - Restricting pypy and jython - - 27 Jun 2011; Justin Lecher azara-2.8-r4.ebuild: - added X USE back - - 26 Jun 2011; Justin Lecher azara-2.8-r4.ebuild, - metadata.xml: - Drop X USE as libX11 is always required, #371179 - -*azara-2.8-r4 (13 Dec 2010) - - 13 Dec 2010; Justin Lecher -azara-2.8-r3.ebuild, - +azara-2.8-r4.ebuild, files/2.8-64bit.patch: - You should not use with helpers; More fixes for 64bit - -*azara-2.8-r3 (12 Dec 2010) - - 12 Dec 2010; Justin Lecher +files/2.8-python.patch, - -files/2.7-impl-dec.patch, -azara-2.8-r1.ebuild, -azara-2.8-r2.ebuild, - -files/2.7-prll.patch, -files/2.8-impl-decng.patch, +azara-2.8-r3.ebuild, - +files/2.8-64bit.patch, -files/2.8-prllng.patch, files/2.8-impl-dec.patch, - -azara-2.7-r1.ebuild, files/2.8-prll.patch: - Fixes for parallel compilation, python, 64bit - -*azara-2.8-r2 (31 Oct 2010) - - 31 Oct 2010; Justin Lecher +files/2.8-impl-decng.patch, - +azara-2.8-r2.ebuild, +files/2.8-prllng.patch: - More parallel fixes and impl dec QA - -*azara-2.8-r1 (06 Aug 2010) -*azara-2.7-r1 (06 Aug 2010) - - 06 Aug 2010; Justin Lecher -azara-2.7.ebuild, - +azara-2.7-r1.ebuild, -azara-2.8.ebuild, +azara-2.8-r1.ebuild: - Renamed all bin to azara-*, 331389 - -*azara-2.8 (04 Aug 2010) - - 04 Aug 2010; Justin Lecher +files/2.7-impl-dec.patch, - azara-2.7.ebuild, +files/2.7-prll.patch, +azara-2.8.ebuild, - +files/2.8-impl-dec.patch, +files/2.8-prll.patch, - -files/help-makefile.patch: - Version bump and prll make fixes - - 11 Apr 2010; Justin Lecher azara-2.7.ebuild: - Do not try to install not builded bins, fixed 314491 - - 18 Feb 2010; Justin Lecher (jlec) azara-2.7.ebuild: - keyworded for ~amd64-linux - -*azara-2.7 (07 Feb 2010) - - 07 Feb 2010; Justin Lecher (jlec) +azara-2.7.ebuild, - +files/help-makefile.patch, +metadata.xml: - New Ebuild diff --git a/sci-chemistry/azara/ChangeLog-2015 b/sci-chemistry/azara/ChangeLog-2015 new file mode 100644 index 00000000..8d903c74 --- /dev/null +++ b/sci-chemistry/azara/ChangeLog-2015 @@ -0,0 +1,80 @@ +# ChangeLog for sci-chemistry/azara +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/azara/ChangeLog,v 1.16 2015/04/08 18:22:14 mgorny Exp $ + + 08 Apr 2015; Michał Górny azara-2.8-r5.ebuild: + Drop old Python implementations + + 06 Jul 2014; Justin Lecher azara-2.8-r4.ebuild, + azara-2.8-r5.ebuild: + Add missing dep on x11-libs/motif, #515000 + + 16 Oct 2013; Justin Lecher azara-2.8-r5.ebuild: + Use python_xport correctly + + 15 Oct 2013; Justin Lecher azara-2.8-r5.ebuild: + USe eclass in cleaner way + +*azara-2.8-r5 (15 Oct 2013) + + 15 Oct 2013; Justin Lecher +azara-2.8-r5.ebuild, + metadata.xml: + Move to new python r1 eclasses + + 25 Feb 2012; Patrick Lauer azara-2.8-r4.ebuild: + Restricting pypy and jython + + 27 Jun 2011; Justin Lecher azara-2.8-r4.ebuild: + added X USE back + + 26 Jun 2011; Justin Lecher azara-2.8-r4.ebuild, + metadata.xml: + Drop X USE as libX11 is always required, #371179 + +*azara-2.8-r4 (13 Dec 2010) + + 13 Dec 2010; Justin Lecher -azara-2.8-r3.ebuild, + +azara-2.8-r4.ebuild, files/2.8-64bit.patch: + You should not use with helpers; More fixes for 64bit + +*azara-2.8-r3 (12 Dec 2010) + + 12 Dec 2010; Justin Lecher +files/2.8-python.patch, + -files/2.7-impl-dec.patch, -azara-2.8-r1.ebuild, -azara-2.8-r2.ebuild, + -files/2.7-prll.patch, -files/2.8-impl-decng.patch, +azara-2.8-r3.ebuild, + +files/2.8-64bit.patch, -files/2.8-prllng.patch, files/2.8-impl-dec.patch, + -azara-2.7-r1.ebuild, files/2.8-prll.patch: + Fixes for parallel compilation, python, 64bit + +*azara-2.8-r2 (31 Oct 2010) + + 31 Oct 2010; Justin Lecher +files/2.8-impl-decng.patch, + +azara-2.8-r2.ebuild, +files/2.8-prllng.patch: + More parallel fixes and impl dec QA + +*azara-2.8-r1 (06 Aug 2010) +*azara-2.7-r1 (06 Aug 2010) + + 06 Aug 2010; Justin Lecher -azara-2.7.ebuild, + +azara-2.7-r1.ebuild, -azara-2.8.ebuild, +azara-2.8-r1.ebuild: + Renamed all bin to azara-*, 331389 + +*azara-2.8 (04 Aug 2010) + + 04 Aug 2010; Justin Lecher +files/2.7-impl-dec.patch, + azara-2.7.ebuild, +files/2.7-prll.patch, +azara-2.8.ebuild, + +files/2.8-impl-dec.patch, +files/2.8-prll.patch, + -files/help-makefile.patch: + Version bump and prll make fixes + + 11 Apr 2010; Justin Lecher azara-2.7.ebuild: + Do not try to install not builded bins, fixed 314491 + + 18 Feb 2010; Justin Lecher (jlec) azara-2.7.ebuild: + keyworded for ~amd64-linux + +*azara-2.7 (07 Feb 2010) + + 07 Feb 2010; Justin Lecher (jlec) +azara-2.7.ebuild, + +files/help-makefile.patch, +metadata.xml: + New Ebuild diff --git a/sci-chemistry/babel/ChangeLog b/sci-chemistry/babel/ChangeLog deleted file mode 100644 index 8b330960..00000000 --- a/sci-chemistry/babel/ChangeLog +++ /dev/null @@ -1,86 +0,0 @@ -# ChangeLog for sci-chemistry/babel -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/babel/ChangeLog,v 1.15 2014/04/16 22:08:23 ulm Exp $ - - 16 Apr 2014; Ulrich Müller babel-1.6-r1.ebuild: - Fix LICENSE, add mirror and bindist restrictions, bug 470780. - - 06 Mar 2012; Justin Lecher -babel-1.6.ebuild: - Drop Old - - 06 Mar 2012; Brent Baude babel-1.6-r1.ebuild: - Marking babel-1.6-r1 ppc for bug 393887 - - 21 Dec 2011; Pawel Hajdan jr babel-1.6-r1.ebuild: - x86 stable wrt bug #393887 - - 18 Dec 2011; Agostino Sarubbo babel-1.6-r1.ebuild: - Stable for AMD64, wrt bug #393887 - - 18 Dec 2011; Justin Lecher babel-1.6-r1.ebuild: - Don't install binaries in / - - 16 Dec 2011; Justin Lecher babel-1.6-r1.ebuild: - Restructured to fit commen-sense - - 25 Jun 2011; Justin Lecher babel-1.6.ebuild, - babel-1.6-r1.ebuild, metadata.xml: - Cleaned ebuild, moved EAPI=4 - - 30 Apr 2011; Raúl Porcel babel-1.6.ebuild, - babel-1.6-r1.ebuild: - Drop sparc keywords - -*babel-1.6-r1 (19 Oct 2008) - - 19 Oct 2008; Markus Dittrich - +files/babel-1.6-makefile.patch, babel-1.6.ebuild, +babel-1.6-r1.ebuild: - Added new and significantly cleaned up revision which also fixes - pre-stripping and LDFLAGS issues (see bug #241184). - - 28 Apr 2007; Sven Wegener babel-1.6.ebuild: - Fix *initd, *confd and *envd calls (#17388, #174266) - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*babel-1.6 (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +files/10babel, +files/babel-1.6-gcc32.diff, +files/babel-1.6-gentoo.diff, - +babel-1.6.ebuild: - Moved from app-sci/babel to sci-chemistry/babel. - - 15 Jul 2004; Danny van Dyk babel-1.6.ebuild: - Marked ~amd64. - - 19 Apr 2004; Patrick Kursawe babel-1.6.ebuild: - Adding IUSE - - 26 Mar 2004; Patrick Kursawe babel-1.6.ebuild: - Adding "inherit eutils" - - 16 Dec 2003; Jason Wever babel-1.6.ebuild: - Added ~sparc keyword to fix broken dependencies in app-sci/xdrawchem. - - 24 Sep 2003; Patrick Kursawe babel-1.6.ebuild: - removed old PROVIDE line, added blocker for openbabel. - -*babel-1.6 (1 Feb 2002) - - 15 Sep 2002; Owen Stampflee : - Fixed a problem where GCC 3.2 fails to compile Babel on PPC. - - 25 Jul 2002; Daniel Ahlberg babel-1.6.ebuild : - Added LICENSE, KEYWORDS, SLOT. - - 1 Feb 2002; G.Bevin ChangeLog : - - Added initial ChangeLog which should be updated whenever the package is - updated in any way. This changelog is targetted to users. This means that the - comments should well explained and written in clean English. The details about - writing correct changelogs are explained in the skel.ChangeLog file which you - can find in the root directory of the portage repository. diff --git a/sci-chemistry/babel/ChangeLog-2015 b/sci-chemistry/babel/ChangeLog-2015 new file mode 100644 index 00000000..8b330960 --- /dev/null +++ b/sci-chemistry/babel/ChangeLog-2015 @@ -0,0 +1,86 @@ +# ChangeLog for sci-chemistry/babel +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/babel/ChangeLog,v 1.15 2014/04/16 22:08:23 ulm Exp $ + + 16 Apr 2014; Ulrich Müller babel-1.6-r1.ebuild: + Fix LICENSE, add mirror and bindist restrictions, bug 470780. + + 06 Mar 2012; Justin Lecher -babel-1.6.ebuild: + Drop Old + + 06 Mar 2012; Brent Baude babel-1.6-r1.ebuild: + Marking babel-1.6-r1 ppc for bug 393887 + + 21 Dec 2011; Pawel Hajdan jr babel-1.6-r1.ebuild: + x86 stable wrt bug #393887 + + 18 Dec 2011; Agostino Sarubbo babel-1.6-r1.ebuild: + Stable for AMD64, wrt bug #393887 + + 18 Dec 2011; Justin Lecher babel-1.6-r1.ebuild: + Don't install binaries in / + + 16 Dec 2011; Justin Lecher babel-1.6-r1.ebuild: + Restructured to fit commen-sense + + 25 Jun 2011; Justin Lecher babel-1.6.ebuild, + babel-1.6-r1.ebuild, metadata.xml: + Cleaned ebuild, moved EAPI=4 + + 30 Apr 2011; Raúl Porcel babel-1.6.ebuild, + babel-1.6-r1.ebuild: + Drop sparc keywords + +*babel-1.6-r1 (19 Oct 2008) + + 19 Oct 2008; Markus Dittrich + +files/babel-1.6-makefile.patch, babel-1.6.ebuild, +babel-1.6-r1.ebuild: + Added new and significantly cleaned up revision which also fixes + pre-stripping and LDFLAGS issues (see bug #241184). + + 28 Apr 2007; Sven Wegener babel-1.6.ebuild: + Fix *initd, *confd and *envd calls (#17388, #174266) + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*babel-1.6 (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +files/10babel, +files/babel-1.6-gcc32.diff, +files/babel-1.6-gentoo.diff, + +babel-1.6.ebuild: + Moved from app-sci/babel to sci-chemistry/babel. + + 15 Jul 2004; Danny van Dyk babel-1.6.ebuild: + Marked ~amd64. + + 19 Apr 2004; Patrick Kursawe babel-1.6.ebuild: + Adding IUSE + + 26 Mar 2004; Patrick Kursawe babel-1.6.ebuild: + Adding "inherit eutils" + + 16 Dec 2003; Jason Wever babel-1.6.ebuild: + Added ~sparc keyword to fix broken dependencies in app-sci/xdrawchem. + + 24 Sep 2003; Patrick Kursawe babel-1.6.ebuild: + removed old PROVIDE line, added blocker for openbabel. + +*babel-1.6 (1 Feb 2002) + + 15 Sep 2002; Owen Stampflee : + Fixed a problem where GCC 3.2 fails to compile Babel on PPC. + + 25 Jul 2002; Daniel Ahlberg babel-1.6.ebuild : + Added LICENSE, KEYWORDS, SLOT. + + 1 Feb 2002; G.Bevin ChangeLog : + + Added initial ChangeLog which should be updated whenever the package is + updated in any way. This changelog is targetted to users. This means that the + comments should well explained and written in clean English. The details about + writing correct changelogs are explained in the skel.ChangeLog file which you + can find in the root directory of the portage repository. diff --git a/sci-chemistry/balbes/ChangeLog b/sci-chemistry/balbes/ChangeLog deleted file mode 100644 index 8ce58995..00000000 --- a/sci-chemistry/balbes/ChangeLog +++ /dev/null @@ -1,56 +0,0 @@ -# ChangeLog for sci-chemistry/balbes -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/balbes/ChangeLog,v 1.12 2012/10/19 09:39:51 jlec Exp $ - - 19 Oct 2012; Justin Lecher balbes-1.0.0_p100317-r2.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 07 Aug 2011; Markos Chandras - balbes-1.0.0_p100317-r2.ebuild: - Stable on amd64 wrt bug #375903 - - 07 Aug 2011; Pawel Hajdan jr - balbes-1.0.0_p100317-r2.ebuild: - x86 stable wrt bug #375903 - -*balbes-1.0.0_p100317-r2 (23 Jul 2011) - - 23 Jul 2011; Justin Lecher - +files/pyxml-0.8.4-python-2.6.patch, -balbes-1.0.0_p100317-r1.ebuild, - +balbes-1.0.0_p100317-r2.ebuild, metadata.xml: - Fix for missing StripXml, #375903 - - 21 Jun 2011; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: - Added fortran-2.eclass support - - 16 Jan 2011; Kacper Kowalik - balbes-1.0.0_p100317-r1.ebuild: - marked ~ppc wrt #303931 - - 16 Dec 2010; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: - Removal of fortran.eclass, #348851 - -*balbes-1.0.0_p100317-r1 (12 May 2010) - - 12 May 2010; Justin Lecher - -files/1.0.0_p100317-ldflags.patch, -balbes-1.0.0_p100317.ebuild, - +files/1.0.0_p100317-makefile.patch, +balbes-1.0.0_p100317-r1.ebuild: - Buildsystem fix, #319347 - - 22 Apr 2010; Justin Lecher balbes-1.0.0_p100317.ebuild: - Fixes for Python ABIs - - 28 Mar 2010; Justin Lecher balbes-1.0.0_p100317.ebuild: - Keyworded for ~x86-linux ~amd64-linux - -*balbes-1.0.0_p100317 (28 Mar 2010) - - 28 Mar 2010; Justin Lecher (jlec) - +files/1.0.0_p100317-ldflags.patch, +balbes-1.0.0_p100317.ebuild, - +metadata.xml: - New ebuild #309105 - diff --git a/sci-chemistry/balbes/ChangeLog-2015 b/sci-chemistry/balbes/ChangeLog-2015 new file mode 100644 index 00000000..8ce58995 --- /dev/null +++ b/sci-chemistry/balbes/ChangeLog-2015 @@ -0,0 +1,56 @@ +# ChangeLog for sci-chemistry/balbes +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/balbes/ChangeLog,v 1.12 2012/10/19 09:39:51 jlec Exp $ + + 19 Oct 2012; Justin Lecher balbes-1.0.0_p100317-r2.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 07 Aug 2011; Markos Chandras + balbes-1.0.0_p100317-r2.ebuild: + Stable on amd64 wrt bug #375903 + + 07 Aug 2011; Pawel Hajdan jr + balbes-1.0.0_p100317-r2.ebuild: + x86 stable wrt bug #375903 + +*balbes-1.0.0_p100317-r2 (23 Jul 2011) + + 23 Jul 2011; Justin Lecher + +files/pyxml-0.8.4-python-2.6.patch, -balbes-1.0.0_p100317-r1.ebuild, + +balbes-1.0.0_p100317-r2.ebuild, metadata.xml: + Fix for missing StripXml, #375903 + + 21 Jun 2011; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: + Added fortran-2.eclass support + + 16 Jan 2011; Kacper Kowalik + balbes-1.0.0_p100317-r1.ebuild: + marked ~ppc wrt #303931 + + 16 Dec 2010; Justin Lecher balbes-1.0.0_p100317-r1.ebuild: + Removal of fortran.eclass, #348851 + +*balbes-1.0.0_p100317-r1 (12 May 2010) + + 12 May 2010; Justin Lecher + -files/1.0.0_p100317-ldflags.patch, -balbes-1.0.0_p100317.ebuild, + +files/1.0.0_p100317-makefile.patch, +balbes-1.0.0_p100317-r1.ebuild: + Buildsystem fix, #319347 + + 22 Apr 2010; Justin Lecher balbes-1.0.0_p100317.ebuild: + Fixes for Python ABIs + + 28 Mar 2010; Justin Lecher balbes-1.0.0_p100317.ebuild: + Keyworded for ~x86-linux ~amd64-linux + +*balbes-1.0.0_p100317 (28 Mar 2010) + + 28 Mar 2010; Justin Lecher (jlec) + +files/1.0.0_p100317-ldflags.patch, +balbes-1.0.0_p100317.ebuild, + +metadata.xml: + New ebuild #309105 + diff --git a/sci-chemistry/ball/ChangeLog b/sci-chemistry/ball/ChangeLog deleted file mode 100644 index 89bf135f..00000000 --- a/sci-chemistry/ball/ChangeLog +++ /dev/null @@ -1,86 +0,0 @@ -# ChangeLog for sci-chemistry/ball -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ball/ChangeLog,v 1.17 2015/05/05 08:46:50 jlec Exp $ - - 05 May 2015; Justin Lecher - +files/ball-1.4.2-underlinking.patch, ball-1.4.2.ebuild: - Fix linking problems, bug #547522 - - 08 Apr 2015; Michał Górny ball-1.4.2.ebuild: - Drop old Python implementations - - 26 Mar 2014; Justin Lecher -ball-1.4.1-r1.ebuild, - -files/ball-1.4.1-Added-MAX_PENALTY-option-to-bond-order-assignment.patch, - -files/ball-1.4.1-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch, - -files/ball-1.4.1-Fix-compilation-of-Python-bindings-with-new-sip-vers.patch, - -files/ball-1.4.1-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch, - -files/ball-1.4.1-Fixed-the-FPT-version-of-bond-order-assignment-2.patch, - -files/ball-1.4.1-gcc-4.7.patch, -files/ball-1.4.1-libsvm.patch, - -files/ball-1.4.1-pthread.patch, -files/ball-1.4.1-python.patch: - Drop old, fixes #485830, #505856 - -*ball-1.4.2 (26 Mar 2014) - - 26 Mar 2014; Justin Lecher ball-1.4.1-r1.ebuild, - +ball-1.4.2.ebuild, - +files/ball-1.4.2-Fix-compilation-of-sipModularWidget.patch, - +files/ball-1.4.2-PDBFile-Fix-compilation-with-gcc-4.8.patch, - +files/ball-1.4.2-QT4_EXTRACT_OPTIONS-CMake-macro-changed-in-CMake-2.8.patch: - Version Bump - - 05 Sep 2013; Michał Górny ball-1.4.1-r1.ebuild: - Clean up PYTHON_COMPAT from old implementations. - - 17 Jul 2013; Justin Lecher -ball-1.4.1.ebuild: - Drop old - - 17 Jul 2013; Justin Lecher ball-1.4.1-r1.ebuild: - Add missing test to USE, #477016 - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 29 May 2013; Justin Lecher ball-1.4.1-r1.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, - PYTHON_DEPS) - - 03 Mar 2013; Davide Pesavento metadata.xml: - Adjust metadata for Qt category move. - - 02 Mar 2013; Markos Chandras ball-1.4.1-r1.ebuild, - ball-1.4.1.ebuild: - Move Qt dependencies to the new category - - 27 Jan 2013; Justin Lecher ball-1.4.1-r1.ebuild: - Use python-single-r1 eclass - -*ball-1.4.1-r1 (27 Jan 2013) - - 27 Jan 2013; Justin Lecher ball-1.4.1.ebuild, - +ball-1.4.1-r1.ebuild, - +files/ball-1.4.1-Added-MAX_PENALTY-option-to-bond-order-assignment.patch, - +files/ball-1.4.1-BondOrder.xml.patch, - +files/ball-1.4.1-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch, - +files/ball-1.4.1-Fix-compilation-of-Python-bindings-with-new-sip-vers.patch, - +files/ball-1.4.1-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch, - +files/ball-1.4.1-Fixed-the-FPT-version-of-bond-order-assignment-2.patch, - files/ball-1.4.1-gcc-4.7.patch: - Add fix for tests, #454162; backport patches upstream included in debian - package - - 13 Dec 2012; Justin Lecher ball-1.4.1.ebuild, - +files/ball-1.4.1-gcc-4.7.patch, +files/ball-1.4.1-missing-signed.patch, - metadata.xml: - Fix for gcc-4.7, backported from upstream and stolen from debian; thanks for - their contribution, #425424 - - 26 Jul 2012; Michael Palimaka ball-1.4.1.ebuild: - Add missing slot dependencies on Qt. - -*ball-1.4.1 (25 Mar 2012) - - 25 Mar 2012; Justin Lecher +ball-1.4.1.ebuild, - +files/ball-1.4.1-libsvm.patch, +files/ball-1.4.1-multilib.patch, - +files/ball-1.4.1-pthread.patch, +files/ball-1.4.1-python.patch, - +metadata.xml: - New addition, written by me, #406401 diff --git a/sci-chemistry/ball/ChangeLog-2015 b/sci-chemistry/ball/ChangeLog-2015 new file mode 100644 index 00000000..89bf135f --- /dev/null +++ b/sci-chemistry/ball/ChangeLog-2015 @@ -0,0 +1,86 @@ +# ChangeLog for sci-chemistry/ball +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ball/ChangeLog,v 1.17 2015/05/05 08:46:50 jlec Exp $ + + 05 May 2015; Justin Lecher + +files/ball-1.4.2-underlinking.patch, ball-1.4.2.ebuild: + Fix linking problems, bug #547522 + + 08 Apr 2015; Michał Górny ball-1.4.2.ebuild: + Drop old Python implementations + + 26 Mar 2014; Justin Lecher -ball-1.4.1-r1.ebuild, + -files/ball-1.4.1-Added-MAX_PENALTY-option-to-bond-order-assignment.patch, + -files/ball-1.4.1-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch, + -files/ball-1.4.1-Fix-compilation-of-Python-bindings-with-new-sip-vers.patch, + -files/ball-1.4.1-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch, + -files/ball-1.4.1-Fixed-the-FPT-version-of-bond-order-assignment-2.patch, + -files/ball-1.4.1-gcc-4.7.patch, -files/ball-1.4.1-libsvm.patch, + -files/ball-1.4.1-pthread.patch, -files/ball-1.4.1-python.patch: + Drop old, fixes #485830, #505856 + +*ball-1.4.2 (26 Mar 2014) + + 26 Mar 2014; Justin Lecher ball-1.4.1-r1.ebuild, + +ball-1.4.2.ebuild, + +files/ball-1.4.2-Fix-compilation-of-sipModularWidget.patch, + +files/ball-1.4.2-PDBFile-Fix-compilation-with-gcc-4.8.patch, + +files/ball-1.4.2-QT4_EXTRACT_OPTIONS-CMake-macro-changed-in-CMake-2.8.patch: + Version Bump + + 05 Sep 2013; Michał Górny ball-1.4.1-r1.ebuild: + Clean up PYTHON_COMPAT from old implementations. + + 17 Jul 2013; Justin Lecher -ball-1.4.1.ebuild: + Drop old + + 17 Jul 2013; Justin Lecher ball-1.4.1-r1.ebuild: + Add missing test to USE, #477016 + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 29 May 2013; Justin Lecher ball-1.4.1-r1.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, + PYTHON_DEPS) + + 03 Mar 2013; Davide Pesavento metadata.xml: + Adjust metadata for Qt category move. + + 02 Mar 2013; Markos Chandras ball-1.4.1-r1.ebuild, + ball-1.4.1.ebuild: + Move Qt dependencies to the new category + + 27 Jan 2013; Justin Lecher ball-1.4.1-r1.ebuild: + Use python-single-r1 eclass + +*ball-1.4.1-r1 (27 Jan 2013) + + 27 Jan 2013; Justin Lecher ball-1.4.1.ebuild, + +ball-1.4.1-r1.ebuild, + +files/ball-1.4.1-Added-MAX_PENALTY-option-to-bond-order-assignment.patch, + +files/ball-1.4.1-BondOrder.xml.patch, + +files/ball-1.4.1-Fix-compilation-of-FTPBondOrderStrategy-Fixes-451.patch, + +files/ball-1.4.1-Fix-compilation-of-Python-bindings-with-new-sip-vers.patch, + +files/ball-1.4.1-Fixed-a-bug-in-the-AssignBondOrderProcessor.patch, + +files/ball-1.4.1-Fixed-the-FPT-version-of-bond-order-assignment-2.patch, + files/ball-1.4.1-gcc-4.7.patch: + Add fix for tests, #454162; backport patches upstream included in debian + package + + 13 Dec 2012; Justin Lecher ball-1.4.1.ebuild, + +files/ball-1.4.1-gcc-4.7.patch, +files/ball-1.4.1-missing-signed.patch, + metadata.xml: + Fix for gcc-4.7, backported from upstream and stolen from debian; thanks for + their contribution, #425424 + + 26 Jul 2012; Michael Palimaka ball-1.4.1.ebuild: + Add missing slot dependencies on Qt. + +*ball-1.4.1 (25 Mar 2012) + + 25 Mar 2012; Justin Lecher +ball-1.4.1.ebuild, + +files/ball-1.4.1-libsvm.patch, +files/ball-1.4.1-multilib.patch, + +files/ball-1.4.1-pthread.patch, +files/ball-1.4.1-python.patch, + +metadata.xml: + New addition, written by me, #406401 diff --git a/sci-chemistry/bkchem/ChangeLog b/sci-chemistry/bkchem/ChangeLog deleted file mode 100644 index 9b37e69b..00000000 --- a/sci-chemistry/bkchem/ChangeLog +++ /dev/null @@ -1,40 +0,0 @@ -# ChangeLog for sci-chemistry/bkchem -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/bkchem/ChangeLog,v 1.8 2015/04/07 14:36:26 jlec Exp $ - -*bkchem-0.14.0_pre2-r1 (20 Feb 2015) - - 20 Feb 2015; Justin Lecher +bkchem-0.14.0_pre2-r1.ebuild, - +files/bkchem-0.14.0_pre2-nolauncher.patch, -bkchem-0.14.0_pre1-r2.ebuild, - -bkchem-0.14.0_pre2.ebuild, metadata.xml: - Drop old; move to EAPI=5 and new pythen eclasses - -*bkchem-0.14.0_pre2 (12 Aug 2010) - - 12 Aug 2010; Justin Lecher +bkchem-0.14.0_pre2.ebuild: - Version Bump - - 11 Jul 2010; Justin Lecher bkchem-0.14.0_pre1-r2.ebuild: - Respecting USE=cairo and fix for prefix, thanks rei4dan for the patch - - 25 Jun 2010; Justin Lecher bkchem-0.14.0_pre1-r2.ebuild: - Added desktop entry - -*bkchem-0.14.0_pre1-r2 (18 Jun 2010) - - 18 Jun 2010; Justin Lecher - +files/0.14.0_pre1-piddle-Fix-assertions.patch, - -bkchem-0.14.0_pre1-r1.ebuild, +bkchem-0.14.0_pre1-r2.ebuild: - Fix Assertions, thanks rei4dan for providing the patch - -*bkchem-0.14.0_pre1-r1 (18 Jun 2010) - - 18 Jun 2010; Justin Lecher -bkchem-0.14.0_pre1.ebuild, - +bkchem-0.14.0_pre1-r1.ebuild: - Fixed Python version to 2.5 - -*bkchem-0.14.0_pre1 (17 Jun 2010) - - 17 Jun 2010; Justin Lecher +bkchem-0.14.0_pre1.ebuild, - +metadata.xml: - New addition imported from sci oerlay, #95178 diff --git a/sci-chemistry/bkchem/ChangeLog-2015 b/sci-chemistry/bkchem/ChangeLog-2015 new file mode 100644 index 00000000..9b37e69b --- /dev/null +++ b/sci-chemistry/bkchem/ChangeLog-2015 @@ -0,0 +1,40 @@ +# ChangeLog for sci-chemistry/bkchem +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/bkchem/ChangeLog,v 1.8 2015/04/07 14:36:26 jlec Exp $ + +*bkchem-0.14.0_pre2-r1 (20 Feb 2015) + + 20 Feb 2015; Justin Lecher +bkchem-0.14.0_pre2-r1.ebuild, + +files/bkchem-0.14.0_pre2-nolauncher.patch, -bkchem-0.14.0_pre1-r2.ebuild, + -bkchem-0.14.0_pre2.ebuild, metadata.xml: + Drop old; move to EAPI=5 and new pythen eclasses + +*bkchem-0.14.0_pre2 (12 Aug 2010) + + 12 Aug 2010; Justin Lecher +bkchem-0.14.0_pre2.ebuild: + Version Bump + + 11 Jul 2010; Justin Lecher bkchem-0.14.0_pre1-r2.ebuild: + Respecting USE=cairo and fix for prefix, thanks rei4dan for the patch + + 25 Jun 2010; Justin Lecher bkchem-0.14.0_pre1-r2.ebuild: + Added desktop entry + +*bkchem-0.14.0_pre1-r2 (18 Jun 2010) + + 18 Jun 2010; Justin Lecher + +files/0.14.0_pre1-piddle-Fix-assertions.patch, + -bkchem-0.14.0_pre1-r1.ebuild, +bkchem-0.14.0_pre1-r2.ebuild: + Fix Assertions, thanks rei4dan for providing the patch + +*bkchem-0.14.0_pre1-r1 (18 Jun 2010) + + 18 Jun 2010; Justin Lecher -bkchem-0.14.0_pre1.ebuild, + +bkchem-0.14.0_pre1-r1.ebuild: + Fixed Python version to 2.5 + +*bkchem-0.14.0_pre1 (17 Jun 2010) + + 17 Jun 2010; Justin Lecher +bkchem-0.14.0_pre1.ebuild, + +metadata.xml: + New addition imported from sci oerlay, #95178 diff --git a/sci-chemistry/bodr/ChangeLog b/sci-chemistry/bodr/ChangeLog deleted file mode 100644 index 187a5fae..00000000 --- a/sci-chemistry/bodr/ChangeLog +++ /dev/null @@ -1,50 +0,0 @@ -# ChangeLog for sci-chemistry/bodr -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/bodr/ChangeLog,v 1.11 2015/04/07 14:36:32 jlec Exp $ - -*bodr-10 (06 Jan 2014) - - 06 Jan 2014; Justin Lecher bodr-9-r1.ebuild, - +bodr-10.ebuild: - Version Bump; punt base.eclass - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #70723 - - 25 Oct 2010; Fabian Groffen bodr-9-r1.ebuild: - Marked ~ppc-macos, bug #342367 - -*bodr-9-r1 (24 Oct 2010) - - 24 Oct 2010; Kacper Kowalik -bodr-9.ebuild, - +bodr-9-r1.ebuild: - Bump to EAPI=3 wrt bug 342367. Drop old. - -*bodr-9 (24 Oct 2010) - - 24 Oct 2010; Kacper Kowalik -bodr-6.ebuild, - -files/bodr-6-install.patch, -bodr-8.ebuild, +bodr-9.ebuild: - Version bump. Drop old. - -*bodr-8 (14 Jun 2008) - - 14 Jun 2008; Markus Dittrich - +files/bodr-6-install.patch, bodr-6.ebuild, +bodr-8.ebuild: - Version bump and general cleanup. Also removed calls to autoconf and - friends (fixes bug #205307 and #226613). - - 27 Aug 2007; Raúl Porcel bodr-6.ebuild: - Add ~x86 wrt #190130 - - 21 Mar 2007; Marcus D. Hanwell bodr-6.ebuild: - Fix ebuild up a little. - - 19 Mar 2007; Zac Medico ChangeLog: - Fix broken Manifest due to commit without repoman. - -*bodr-6 (19 Mar 2007) - - 19 Mar 2007; Marcus D. Hanwell +metadata.xml, - +bodr-6.ebuild: - Initial import into repository. - diff --git a/sci-chemistry/bodr/ChangeLog-2015 b/sci-chemistry/bodr/ChangeLog-2015 new file mode 100644 index 00000000..187a5fae --- /dev/null +++ b/sci-chemistry/bodr/ChangeLog-2015 @@ -0,0 +1,50 @@ +# ChangeLog for sci-chemistry/bodr +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/bodr/ChangeLog,v 1.11 2015/04/07 14:36:32 jlec Exp $ + +*bodr-10 (06 Jan 2014) + + 06 Jan 2014; Justin Lecher bodr-9-r1.ebuild, + +bodr-10.ebuild: + Version Bump; punt base.eclass + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #70723 + + 25 Oct 2010; Fabian Groffen bodr-9-r1.ebuild: + Marked ~ppc-macos, bug #342367 + +*bodr-9-r1 (24 Oct 2010) + + 24 Oct 2010; Kacper Kowalik -bodr-9.ebuild, + +bodr-9-r1.ebuild: + Bump to EAPI=3 wrt bug 342367. Drop old. + +*bodr-9 (24 Oct 2010) + + 24 Oct 2010; Kacper Kowalik -bodr-6.ebuild, + -files/bodr-6-install.patch, -bodr-8.ebuild, +bodr-9.ebuild: + Version bump. Drop old. + +*bodr-8 (14 Jun 2008) + + 14 Jun 2008; Markus Dittrich + +files/bodr-6-install.patch, bodr-6.ebuild, +bodr-8.ebuild: + Version bump and general cleanup. Also removed calls to autoconf and + friends (fixes bug #205307 and #226613). + + 27 Aug 2007; Raúl Porcel bodr-6.ebuild: + Add ~x86 wrt #190130 + + 21 Mar 2007; Marcus D. Hanwell bodr-6.ebuild: + Fix ebuild up a little. + + 19 Mar 2007; Zac Medico ChangeLog: + Fix broken Manifest due to commit without repoman. + +*bodr-6 (19 Mar 2007) + + 19 Mar 2007; Marcus D. Hanwell +metadata.xml, + +bodr-6.ebuild: + Initial import into repository. + diff --git a/sci-chemistry/burrow-owl/ChangeLog b/sci-chemistry/burrow-owl/ChangeLog deleted file mode 100644 index 0bd68ece..00000000 --- a/sci-chemistry/burrow-owl/ChangeLog +++ /dev/null @@ -1,56 +0,0 @@ -# ChangeLog for sci-chemistry/burrow-owl -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/burrow-owl/ChangeLog,v 1.10 2014/02/03 12:26:39 jlec Exp $ - - 03 Feb 2014; Justin Lecher burrow-owl-1.5.1.ebuild: - Bumpt to EAPI=5 - - 07 Mar 2013; Justin Lecher -burrow-owl-1.4-r1.ebuild, - -burrow-owl-1.5.ebuild, metadata.xml: - Drop old - - 26 Jul 2012; Justin Lecher burrow-owl-1.5.1.ebuild: - Needs X for tests, #427896 - - 04 May 2012; Jeff Horelick burrow-owl-1.4-r1.ebuild, - burrow-owl-1.5.ebuild, burrow-owl-1.5.1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*burrow-owl-1.5.1 (27 Feb 2012) - - 27 Feb 2012; Justin Lecher +burrow-owl-1.5.1.ebuild: - Version Bump - -*burrow-owl-1.5 (14 Feb 2012) - - 14 Feb 2012; Justin Lecher +burrow-owl-1.5.ebuild, - +files/burrow-owl-1.5-prll.patch: - Version Bump - -*burrow-owl-1.4-r1 (24 Aug 2010) - - 24 Aug 2010; Kacper Kowalik - -burrow-owl-1.4.ebuild, +burrow-owl-1.4-r1.ebuild, - +files/1.4-glibc-2.12.patch: - Fix building with recent glibc wrt bug 333843. Thanks to Diego for report - and Samuli for the fix. - - 17 Jul 2010; Kacper Kowalik burrow-owl-1.4.ebuild: - Add missing dependencies. Fix tests wrt bug 328561. Thanks to Diego for - report. - -*burrow-owl-1.4 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher +files/1.4-include.patch, - -burrow-owl-1.2.ebuild, -files/burrow-owl-1.2-make-script-dir.patch, - +burrow-owl-1.4.ebuild: - Version Bump and removal of old, #252634 - -*burrow-owl-1.2 (06 Jun 2007) - - 06 Jun 2007; Donnie Berkholz ; - +files/burrow-owl-1.2-make-script-dir.patch, +metadata.xml, - +burrow-owl-1.2.ebuild: - New package to visualize multidimensional nuclear magnetic resonance (NMR) - spectra. - diff --git a/sci-chemistry/burrow-owl/ChangeLog-2015 b/sci-chemistry/burrow-owl/ChangeLog-2015 new file mode 100644 index 00000000..0bd68ece --- /dev/null +++ b/sci-chemistry/burrow-owl/ChangeLog-2015 @@ -0,0 +1,56 @@ +# ChangeLog for sci-chemistry/burrow-owl +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/burrow-owl/ChangeLog,v 1.10 2014/02/03 12:26:39 jlec Exp $ + + 03 Feb 2014; Justin Lecher burrow-owl-1.5.1.ebuild: + Bumpt to EAPI=5 + + 07 Mar 2013; Justin Lecher -burrow-owl-1.4-r1.ebuild, + -burrow-owl-1.5.ebuild, metadata.xml: + Drop old + + 26 Jul 2012; Justin Lecher burrow-owl-1.5.1.ebuild: + Needs X for tests, #427896 + + 04 May 2012; Jeff Horelick burrow-owl-1.4-r1.ebuild, + burrow-owl-1.5.ebuild, burrow-owl-1.5.1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*burrow-owl-1.5.1 (27 Feb 2012) + + 27 Feb 2012; Justin Lecher +burrow-owl-1.5.1.ebuild: + Version Bump + +*burrow-owl-1.5 (14 Feb 2012) + + 14 Feb 2012; Justin Lecher +burrow-owl-1.5.ebuild, + +files/burrow-owl-1.5-prll.patch: + Version Bump + +*burrow-owl-1.4-r1 (24 Aug 2010) + + 24 Aug 2010; Kacper Kowalik + -burrow-owl-1.4.ebuild, +burrow-owl-1.4-r1.ebuild, + +files/1.4-glibc-2.12.patch: + Fix building with recent glibc wrt bug 333843. Thanks to Diego for report + and Samuli for the fix. + + 17 Jul 2010; Kacper Kowalik burrow-owl-1.4.ebuild: + Add missing dependencies. Fix tests wrt bug 328561. Thanks to Diego for + report. + +*burrow-owl-1.4 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher +files/1.4-include.patch, + -burrow-owl-1.2.ebuild, -files/burrow-owl-1.2-make-script-dir.patch, + +burrow-owl-1.4.ebuild: + Version Bump and removal of old, #252634 + +*burrow-owl-1.2 (06 Jun 2007) + + 06 Jun 2007; Donnie Berkholz ; + +files/burrow-owl-1.2-make-script-dir.patch, +metadata.xml, + +burrow-owl-1.2.ebuild: + New package to visualize multidimensional nuclear magnetic resonance (NMR) + spectra. + diff --git a/sci-chemistry/cara-bin/ChangeLog b/sci-chemistry/cara-bin/ChangeLog deleted file mode 100644 index 5ced8147..00000000 --- a/sci-chemistry/cara-bin/ChangeLog +++ /dev/null @@ -1,51 +0,0 @@ -# ChangeLog for sci-chemistry/cara-bin -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cara-bin/ChangeLog,v 1.13 2015/07/31 10:18:19 jlec Exp $ - - 31 Jul 2015; Justin Lecher -cara-bin-1.8.4.ebuild, - cara-bin-1.8.4-r1.ebuild: - Fix for non-multilib on prefix - - 14 Jun 2015; Ulrich Müller cara-bin-1.8.4.ebuild, - cara-bin-1.8.4-r1.ebuild: - [QA] Remove emul-linux-x86-* from dependencies. - - 15 Oct 2014; Pacho Ramos cara-bin-1.8.4-r1.ebuild, - cara-bin-1.8.4.ebuild: - Support multilib providers for deps. Bump to EAPI=5. - -*cara-bin-1.8.4-r1 (14 Oct 2014) - - 14 Oct 2014; Justin Lecher +cara-bin-1.8.4-r1.ebuild, - metadata.xml: - Declutter env, bump EAPI - - 07 Sep 2014; Ulrich Müller cara-bin-1.8.4.ebuild: - Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. - - 18 Jun 2014; Michał Górny cara-bin-1.8.4.ebuild: - Update dependencies to require guaranteed EAPI=5 or multilib ebuilds, bug - #513718. - - 21 Apr 2013; Michał Górny cara-bin-1.8.4.ebuild: - Support multilib libraries alternatively to emul-linux-x86-xlibs. - - 10 Sep 2012; Justin Lecher cara-bin-1.8.4.ebuild: - Add QA_PREBUILT beause we are binary - - 26 Dec 2011; Justin Lecher cara-bin-1.8.4.ebuild, - metadata.xml: - Mirror unfetchable files, moved to EAPI=4 - - 20 May 2010; Justin Lecher cara-bin-1.8.4.ebuild: - Fixed HOMEPAGE - - 09 Mar 2010; Justin Lecher - cara-bin-1.8.4.ebuild: - keyworded for amd64-linux - -*cara-bin-1.8.4 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher - +cara-bin-1.8.4.ebuild, +metadata.xml: - New addition for NMR assignment software, bug 209124 diff --git a/sci-chemistry/cara-bin/ChangeLog-2015 b/sci-chemistry/cara-bin/ChangeLog-2015 new file mode 100644 index 00000000..5ced8147 --- /dev/null +++ b/sci-chemistry/cara-bin/ChangeLog-2015 @@ -0,0 +1,51 @@ +# ChangeLog for sci-chemistry/cara-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cara-bin/ChangeLog,v 1.13 2015/07/31 10:18:19 jlec Exp $ + + 31 Jul 2015; Justin Lecher -cara-bin-1.8.4.ebuild, + cara-bin-1.8.4-r1.ebuild: + Fix for non-multilib on prefix + + 14 Jun 2015; Ulrich Müller cara-bin-1.8.4.ebuild, + cara-bin-1.8.4-r1.ebuild: + [QA] Remove emul-linux-x86-* from dependencies. + + 15 Oct 2014; Pacho Ramos cara-bin-1.8.4-r1.ebuild, + cara-bin-1.8.4.ebuild: + Support multilib providers for deps. Bump to EAPI=5. + +*cara-bin-1.8.4-r1 (14 Oct 2014) + + 14 Oct 2014; Justin Lecher +cara-bin-1.8.4-r1.ebuild, + metadata.xml: + Declutter env, bump EAPI + + 07 Sep 2014; Ulrich Müller cara-bin-1.8.4.ebuild: + Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. + + 18 Jun 2014; Michał Górny cara-bin-1.8.4.ebuild: + Update dependencies to require guaranteed EAPI=5 or multilib ebuilds, bug + #513718. + + 21 Apr 2013; Michał Górny cara-bin-1.8.4.ebuild: + Support multilib libraries alternatively to emul-linux-x86-xlibs. + + 10 Sep 2012; Justin Lecher cara-bin-1.8.4.ebuild: + Add QA_PREBUILT beause we are binary + + 26 Dec 2011; Justin Lecher cara-bin-1.8.4.ebuild, + metadata.xml: + Mirror unfetchable files, moved to EAPI=4 + + 20 May 2010; Justin Lecher cara-bin-1.8.4.ebuild: + Fixed HOMEPAGE + + 09 Mar 2010; Justin Lecher + cara-bin-1.8.4.ebuild: + keyworded for amd64-linux + +*cara-bin-1.8.4 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher + +cara-bin-1.8.4.ebuild, +metadata.xml: + New addition for NMR assignment software, bug 209124 diff --git a/sci-chemistry/ccp4-apps/ChangeLog b/sci-chemistry/ccp4-apps/ChangeLog deleted file mode 100644 index 5ffa7d7e..00000000 --- a/sci-chemistry/ccp4-apps/ChangeLog +++ /dev/null @@ -1,227 +0,0 @@ -# ChangeLog for sci-chemistry/ccp4-apps -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4-apps/ChangeLog,v 1.47 2015/05/05 08:53:26 jlec Exp $ - - 05 May 2015; Justin Lecher -ccp4-apps-6.1.3-r11.ebuild, - -ccp4-apps-6.1.3-r12.ebuild, ccp4-apps-6.1.3-r13.ebuild: - Drop old - - 25 Mar 2015; Agostino Sarubbo ccp4-apps-6.1.3-r13.ebuild: - Stable for x86, wrt bug #542694 - - 24 Mar 2015; Agostino Sarubbo ccp4-apps-6.1.3-r13.ebuild: - Stable for amd64, wrt bug #542694 - - 09 Mar 2015; Justin Lecher ccp4-apps-6.1.3-r11.ebuild, - ccp4-apps-6.1.3-r12.ebuild, ccp4-apps-6.1.3-r13.ebuild: - Fix missing download location, #542468 - -*ccp4-apps-6.1.3-r13 (18 Jan 2015) - - 18 Jan 2015; Michał Górny +ccp4-apps-6.1.3-r13.ebuild: - Convert to python-single-r1. - - 27 Oct 2014; Justin Lecher ccp4-apps-6.1.3-r11.ebuild, - ccp4-apps-6.1.3-r12.ebuild: - Add missing SLOT restriction on sci-libs/mmdb, #527042 - - 27 Feb 2013; Justin Lecher files/6.1.3-lapack.patch, - ccp4-apps-6.1.3-r11.ebuild, ccp4-apps-6.1.3-r12.ebuild: - Use PKG_CONFIG instead of generic pkg-config - -*ccp4-apps-6.1.3-r12 (10 Jan 2013) - - 10 Jan 2013; Justin Lecher +ccp4-apps-6.1.3-r12.ebuild, - +files/ccp4-apps-6.1.3-tcl8.6.patch, metadata.xml: - Add fix for tcl-8.6 - - 19 Oct 2012; Justin Lecher ccp4-apps-6.1.3-r11.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*ccp4-apps-6.1.3-r11 (31 Aug 2012) - - 31 Aug 2012; Justin Lecher -ccp4-apps-6.1.3-r10.ebuild, - +ccp4-apps-6.1.3-r11.ebuild: - Rename all manpages in order to avoid conflicts with other packages, #429410 - - 01 Jun 2012; Justin Lecher files/6.1.3-lapack.patch, - ccp4-apps-6.1.3-r10.ebuild: - add missing die, don't rely on lapack -> blas dep chain - - 26 Apr 2012; Justin Lecher -ccp4-apps-6.1.3-r9.ebuild, - ccp4-apps-6.1.3-r10.ebuild: - Drop old - - 14 Apr 2012; Andreas Schuerch - ccp4-apps-6.1.3-r10.ebuild: - x86 stable, see bug 375917, thanks all. - - 03 Apr 2012; Justin Lecher ccp4-apps-6.1.3-r10.ebuild: - fix for some unknown issue resulting in #406337, thanks Andreas Schürch for - the initial idea of the fix - - 16 Oct 2011; Samuli Suominen - ccp4-apps-6.1.3-r10.ebuild: - amd64 restable - - 08 Oct 2011; Justin Lecher ccp4-apps-6.1.3-r9.ebuild, - ccp4-apps-6.1.3-r10.ebuild: - Drop dep on dev-tcltk/tkimg - - 08 Oct 2011; Samuli Suominen - ccp4-apps-6.1.3-r10.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon ccp4-apps-6.1.3-r10.ebuild: - Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug - #351753. - - 15 Aug 2011; Kacper Kowalik - ccp4-apps-6.1.3-r10.ebuild: - Marked ~ppc for sci-chemistry/pointless - -*ccp4-apps-6.1.3-r10 (16 Jul 2011) - - 16 Jul 2011; Justin Lecher +files/6.1.3-unbundle.patch, - -ccp4-apps-6.1.3-r7.ebuild, -ccp4-apps-6.1.3-r8.ebuild, - ccp4-apps-6.1.3-r9.ebuild, +ccp4-apps-6.1.3-r10.ebuild, metadata.xml: - Unbundle sci-libs/ssm - - 21 Jun 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, - ccp4-apps-6.1.3-r8.ebuild, ccp4-apps-6.1.3-r9.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, - ccp4-apps-6.1.3-r8.ebuild, ccp4-apps-6.1.3-r9.ebuild: - Added fortran-2.eclass support - - 14 Mar 2011; Justin Lecher +files/6.1.3-lapack.patch, - ccp4-apps-6.1.3-r9.ebuild: - Use pkg-config to detect BLAS/LAPAACK libs - - 14 Mar 2011; Justin Lecher +files/6.1.3-lapack.patch, - ccp4-apps-6.1.3-r9.ebuild: - Use pkg-config to detect BLAS/LAPAACK libs - -*ccp4-apps-6.1.3-r9 (04 Mar 2011) - - 04 Mar 2011; Justin Lecher - -files/6.1.3-clipper-mmdbold-ggc-4.3.patch, - +files/6.1.3-rename-rapper-ng.patch, - -files/6.1.3-fix-setup-bash-incompatibility.patch, - -files/6.1.3-rename-rapper.patch, -files/6.1.3-rename-truncate.patch, - -files/6.1.3-setup.patch, ccp4-apps-6.1.3-r8.ebuild, - +ccp4-apps-6.1.3-r9.ebuild: - Streamline configure - - 02 Mar 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, - ccp4-apps-6.1.3-r8.ebuild: - Correct Slots for gtk 3 introduction to tree - - 16 Jan 2011; Kacper Kowalik - ccp4-apps-6.1.3-r8.ebuild: - marked ~ppc wrt #303931 - -*ccp4-apps-6.1.3-r8 (11 Jan 2011) - - 11 Jan 2011; Justin Lecher files/6.1.3-impl-dec.patch, - +ccp4-apps-6.1.3-r8.ebuild: - Removed unnessesary rpath, Speedup configure by reducing sleep periods, - Respect LDFLAGS and as-needed, fix more implicit declarations - -*ccp4-apps-6.1.3-r7 (10 Jan 2011) - - 10 Jan 2011; Justin Lecher -ccp4-apps-6.1.3-r5.ebuild, - -ccp4-apps-6.1.3-r6.ebuild, +ccp4-apps-6.1.3-r7.ebuild: - Moved the installation of profile files from sci-chemistry/ccp4-apps to - sci-libs/ccp4-libs - -*ccp4-apps-6.1.3-r6 (01 Jan 2011) - - 01 Jan 2011; Justin Lecher +ccp4-apps-6.1.3-r6.ebuild: - Fit sci-libs/ccp4-libs-6.1.3-r5 - - 31 Dec 2010; Justin Lecher ccp4-apps-6.1.3-r5.ebuild: - Block new ccp4-libs version - - 16 Dec 2010; Justin Lecher -ccp4-apps-6.1.3-r1.ebuild, - -ccp4-apps-6.1.3-r2.ebuild, -ccp4-apps-6.1.3-r4.ebuild, - ccp4-apps-6.1.3-r5.ebuild: - Removal of fortran.eclass, #348851 - - 02 Dec 2010; Justin Lecher ccp4-apps-6.1.3-r1.ebuild, - ccp4-apps-6.1.3-r2.ebuild, ccp4-apps-6.1.3-r4.ebuild, - ccp4-apps-6.1.3-r5.ebuild: - Removed automake restirction to 1.6 - -*ccp4-apps-6.1.3-r5 (26 Oct 2010) - - 26 Oct 2010; Justin Lecher +files/6.1.3-impl-dec.patch, - +ccp4-apps-6.1.3-r5.ebuild: - Collision fix with raptor, #342005; Implicit declaration fixes - - 24 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r4.ebuild: - Added missing EPREFIX, thanks to Johan Hattne - -*ccp4-apps-6.1.3-r4 (16 Jun 2010) - - 16 Jun 2010; Justin Lecher -ccp4-apps-6.1.3-r3.ebuild, - +ccp4-apps-6.1.3-r4.ebuild: - Fix regressions from last version - - 15 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r3.ebuild: - keyworded for linux prefix - - 15 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r1.ebuild, - ccp4-apps-6.1.3-r2.ebuild, ccp4-apps-6.1.3-r3.ebuild: - Moved x11-libs/libjwc_* to dev-libs/libjwc_* - -*ccp4-apps-6.1.3-r3 (22 May 2010) - - 22 May 2010; Justin Lecher +ccp4-apps-6.1.3-r3.ebuild: - Fixes for bug 314053 - - 12 May 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: - Added missing fortan_pkg_setup - - 22 Apr 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: - Fixes for Python ABIs, #316171 - - 29 Mar 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: - Removed balbes use again - - 29 Mar 2010; ccp4-apps-6.1.3-r2.ebuild, metadata.xml: - Missing balbes USE added, thanks Mr_Bones - -*ccp4-apps-6.1.3-r2 (28 Mar 2010) - - 28 Mar 2010; Justin Lecher - +ccp4-apps-6.1.3-r2.ebuild: - balbes moved to sci-chemistry/balbes, fixed for PY3 - - 26 Feb 2010; Justin Lecher - ccp4-apps-6.1.3-r1.ebuild: - Missing sci-libs/mmdb DEP added - -*ccp4-apps-6.1.3-r1 (14 Feb 2010) - - 14 Feb 2010; Justin Lecher - -ccp4-apps-6.1.3.ebuild, +ccp4-apps-6.1.3-r1.ebuild: - Fixed CLIB to multilib compatible - -*ccp4-apps-6.1.3 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher - +files/6.1.3-clipper-mmdbold-ggc-4.3.patch, - +files/6.1.3-clipper-template.patch, - +files/6.1.3-dont-build-double-and-make-bindir.patch, - +files/6.1.3-dont-build-imosflm.patch, +files/6.1.3-dont-build-libs.patch, - +files/6.1.3-dont-build-molref.patch, +files/6.1.3-dont-build-scala.patch, - +files/6.1.3-dont-build-xia.patch, +files/6.1.3-dont-configure.patch, - +files/6.1.3-dont-make-dirs-in-configure.patch, - +files/6.1.3-fix-setup-bash-incompatibility.patch, - +files/6.1.3-pisa.patch, +files/6.1.3-pythonpath.patch, - +files/6.1.3-rename-rapper.patch, +files/6.1.3-rename-truncate.patch, - +files/6.1.3-setup.patch, +ccp4-apps-6.1.3.ebuild, +metadata.xml: - Splitted apps from ccp4 diff --git a/sci-chemistry/ccp4-apps/ChangeLog-2015 b/sci-chemistry/ccp4-apps/ChangeLog-2015 new file mode 100644 index 00000000..5ffa7d7e --- /dev/null +++ b/sci-chemistry/ccp4-apps/ChangeLog-2015 @@ -0,0 +1,227 @@ +# ChangeLog for sci-chemistry/ccp4-apps +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4-apps/ChangeLog,v 1.47 2015/05/05 08:53:26 jlec Exp $ + + 05 May 2015; Justin Lecher -ccp4-apps-6.1.3-r11.ebuild, + -ccp4-apps-6.1.3-r12.ebuild, ccp4-apps-6.1.3-r13.ebuild: + Drop old + + 25 Mar 2015; Agostino Sarubbo ccp4-apps-6.1.3-r13.ebuild: + Stable for x86, wrt bug #542694 + + 24 Mar 2015; Agostino Sarubbo ccp4-apps-6.1.3-r13.ebuild: + Stable for amd64, wrt bug #542694 + + 09 Mar 2015; Justin Lecher ccp4-apps-6.1.3-r11.ebuild, + ccp4-apps-6.1.3-r12.ebuild, ccp4-apps-6.1.3-r13.ebuild: + Fix missing download location, #542468 + +*ccp4-apps-6.1.3-r13 (18 Jan 2015) + + 18 Jan 2015; Michał Górny +ccp4-apps-6.1.3-r13.ebuild: + Convert to python-single-r1. + + 27 Oct 2014; Justin Lecher ccp4-apps-6.1.3-r11.ebuild, + ccp4-apps-6.1.3-r12.ebuild: + Add missing SLOT restriction on sci-libs/mmdb, #527042 + + 27 Feb 2013; Justin Lecher files/6.1.3-lapack.patch, + ccp4-apps-6.1.3-r11.ebuild, ccp4-apps-6.1.3-r12.ebuild: + Use PKG_CONFIG instead of generic pkg-config + +*ccp4-apps-6.1.3-r12 (10 Jan 2013) + + 10 Jan 2013; Justin Lecher +ccp4-apps-6.1.3-r12.ebuild, + +files/ccp4-apps-6.1.3-tcl8.6.patch, metadata.xml: + Add fix for tcl-8.6 + + 19 Oct 2012; Justin Lecher ccp4-apps-6.1.3-r11.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*ccp4-apps-6.1.3-r11 (31 Aug 2012) + + 31 Aug 2012; Justin Lecher -ccp4-apps-6.1.3-r10.ebuild, + +ccp4-apps-6.1.3-r11.ebuild: + Rename all manpages in order to avoid conflicts with other packages, #429410 + + 01 Jun 2012; Justin Lecher files/6.1.3-lapack.patch, + ccp4-apps-6.1.3-r10.ebuild: + add missing die, don't rely on lapack -> blas dep chain + + 26 Apr 2012; Justin Lecher -ccp4-apps-6.1.3-r9.ebuild, + ccp4-apps-6.1.3-r10.ebuild: + Drop old + + 14 Apr 2012; Andreas Schuerch + ccp4-apps-6.1.3-r10.ebuild: + x86 stable, see bug 375917, thanks all. + + 03 Apr 2012; Justin Lecher ccp4-apps-6.1.3-r10.ebuild: + fix for some unknown issue resulting in #406337, thanks Andreas Schürch for + the initial idea of the fix + + 16 Oct 2011; Samuli Suominen + ccp4-apps-6.1.3-r10.ebuild: + amd64 restable + + 08 Oct 2011; Justin Lecher ccp4-apps-6.1.3-r9.ebuild, + ccp4-apps-6.1.3-r10.ebuild: + Drop dep on dev-tcltk/tkimg + + 08 Oct 2011; Samuli Suominen + ccp4-apps-6.1.3-r10.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon ccp4-apps-6.1.3-r10.ebuild: + Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug + #351753. + + 15 Aug 2011; Kacper Kowalik + ccp4-apps-6.1.3-r10.ebuild: + Marked ~ppc for sci-chemistry/pointless + +*ccp4-apps-6.1.3-r10 (16 Jul 2011) + + 16 Jul 2011; Justin Lecher +files/6.1.3-unbundle.patch, + -ccp4-apps-6.1.3-r7.ebuild, -ccp4-apps-6.1.3-r8.ebuild, + ccp4-apps-6.1.3-r9.ebuild, +ccp4-apps-6.1.3-r10.ebuild, metadata.xml: + Unbundle sci-libs/ssm + + 21 Jun 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, + ccp4-apps-6.1.3-r8.ebuild, ccp4-apps-6.1.3-r9.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, + ccp4-apps-6.1.3-r8.ebuild, ccp4-apps-6.1.3-r9.ebuild: + Added fortran-2.eclass support + + 14 Mar 2011; Justin Lecher +files/6.1.3-lapack.patch, + ccp4-apps-6.1.3-r9.ebuild: + Use pkg-config to detect BLAS/LAPAACK libs + + 14 Mar 2011; Justin Lecher +files/6.1.3-lapack.patch, + ccp4-apps-6.1.3-r9.ebuild: + Use pkg-config to detect BLAS/LAPAACK libs + +*ccp4-apps-6.1.3-r9 (04 Mar 2011) + + 04 Mar 2011; Justin Lecher + -files/6.1.3-clipper-mmdbold-ggc-4.3.patch, + +files/6.1.3-rename-rapper-ng.patch, + -files/6.1.3-fix-setup-bash-incompatibility.patch, + -files/6.1.3-rename-rapper.patch, -files/6.1.3-rename-truncate.patch, + -files/6.1.3-setup.patch, ccp4-apps-6.1.3-r8.ebuild, + +ccp4-apps-6.1.3-r9.ebuild: + Streamline configure + + 02 Mar 2011; Justin Lecher ccp4-apps-6.1.3-r7.ebuild, + ccp4-apps-6.1.3-r8.ebuild: + Correct Slots for gtk 3 introduction to tree + + 16 Jan 2011; Kacper Kowalik + ccp4-apps-6.1.3-r8.ebuild: + marked ~ppc wrt #303931 + +*ccp4-apps-6.1.3-r8 (11 Jan 2011) + + 11 Jan 2011; Justin Lecher files/6.1.3-impl-dec.patch, + +ccp4-apps-6.1.3-r8.ebuild: + Removed unnessesary rpath, Speedup configure by reducing sleep periods, + Respect LDFLAGS and as-needed, fix more implicit declarations + +*ccp4-apps-6.1.3-r7 (10 Jan 2011) + + 10 Jan 2011; Justin Lecher -ccp4-apps-6.1.3-r5.ebuild, + -ccp4-apps-6.1.3-r6.ebuild, +ccp4-apps-6.1.3-r7.ebuild: + Moved the installation of profile files from sci-chemistry/ccp4-apps to + sci-libs/ccp4-libs + +*ccp4-apps-6.1.3-r6 (01 Jan 2011) + + 01 Jan 2011; Justin Lecher +ccp4-apps-6.1.3-r6.ebuild: + Fit sci-libs/ccp4-libs-6.1.3-r5 + + 31 Dec 2010; Justin Lecher ccp4-apps-6.1.3-r5.ebuild: + Block new ccp4-libs version + + 16 Dec 2010; Justin Lecher -ccp4-apps-6.1.3-r1.ebuild, + -ccp4-apps-6.1.3-r2.ebuild, -ccp4-apps-6.1.3-r4.ebuild, + ccp4-apps-6.1.3-r5.ebuild: + Removal of fortran.eclass, #348851 + + 02 Dec 2010; Justin Lecher ccp4-apps-6.1.3-r1.ebuild, + ccp4-apps-6.1.3-r2.ebuild, ccp4-apps-6.1.3-r4.ebuild, + ccp4-apps-6.1.3-r5.ebuild: + Removed automake restirction to 1.6 + +*ccp4-apps-6.1.3-r5 (26 Oct 2010) + + 26 Oct 2010; Justin Lecher +files/6.1.3-impl-dec.patch, + +ccp4-apps-6.1.3-r5.ebuild: + Collision fix with raptor, #342005; Implicit declaration fixes + + 24 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r4.ebuild: + Added missing EPREFIX, thanks to Johan Hattne + +*ccp4-apps-6.1.3-r4 (16 Jun 2010) + + 16 Jun 2010; Justin Lecher -ccp4-apps-6.1.3-r3.ebuild, + +ccp4-apps-6.1.3-r4.ebuild: + Fix regressions from last version + + 15 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r3.ebuild: + keyworded for linux prefix + + 15 Jun 2010; Justin Lecher ccp4-apps-6.1.3-r1.ebuild, + ccp4-apps-6.1.3-r2.ebuild, ccp4-apps-6.1.3-r3.ebuild: + Moved x11-libs/libjwc_* to dev-libs/libjwc_* + +*ccp4-apps-6.1.3-r3 (22 May 2010) + + 22 May 2010; Justin Lecher +ccp4-apps-6.1.3-r3.ebuild: + Fixes for bug 314053 + + 12 May 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: + Added missing fortan_pkg_setup + + 22 Apr 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: + Fixes for Python ABIs, #316171 + + 29 Mar 2010; Justin Lecher ccp4-apps-6.1.3-r2.ebuild: + Removed balbes use again + + 29 Mar 2010; ccp4-apps-6.1.3-r2.ebuild, metadata.xml: + Missing balbes USE added, thanks Mr_Bones + +*ccp4-apps-6.1.3-r2 (28 Mar 2010) + + 28 Mar 2010; Justin Lecher + +ccp4-apps-6.1.3-r2.ebuild: + balbes moved to sci-chemistry/balbes, fixed for PY3 + + 26 Feb 2010; Justin Lecher + ccp4-apps-6.1.3-r1.ebuild: + Missing sci-libs/mmdb DEP added + +*ccp4-apps-6.1.3-r1 (14 Feb 2010) + + 14 Feb 2010; Justin Lecher + -ccp4-apps-6.1.3.ebuild, +ccp4-apps-6.1.3-r1.ebuild: + Fixed CLIB to multilib compatible + +*ccp4-apps-6.1.3 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher + +files/6.1.3-clipper-mmdbold-ggc-4.3.patch, + +files/6.1.3-clipper-template.patch, + +files/6.1.3-dont-build-double-and-make-bindir.patch, + +files/6.1.3-dont-build-imosflm.patch, +files/6.1.3-dont-build-libs.patch, + +files/6.1.3-dont-build-molref.patch, +files/6.1.3-dont-build-scala.patch, + +files/6.1.3-dont-build-xia.patch, +files/6.1.3-dont-configure.patch, + +files/6.1.3-dont-make-dirs-in-configure.patch, + +files/6.1.3-fix-setup-bash-incompatibility.patch, + +files/6.1.3-pisa.patch, +files/6.1.3-pythonpath.patch, + +files/6.1.3-rename-rapper.patch, +files/6.1.3-rename-truncate.patch, + +files/6.1.3-setup.patch, +ccp4-apps-6.1.3.ebuild, +metadata.xml: + Splitted apps from ccp4 diff --git a/sci-chemistry/ccp4/ChangeLog b/sci-chemistry/ccp4/ChangeLog deleted file mode 100644 index 02217853..00000000 --- a/sci-chemistry/ccp4/ChangeLog +++ /dev/null @@ -1,161 +0,0 @@ -# ChangeLog for sci-chemistry/ccp4 -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.35 2012/10/19 09:42:41 jlec Exp $ - - 19 Oct 2012; Justin Lecher ccp4-6.1.3-r1.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 26 Apr 2012; Justin Lecher -ccp4-6.0.1-r1.ebuild, - -ccp4-6.0.2.ebuild, -ccp4-6.0.2-r1.ebuild, -ccp4-6.1.3.ebuild: - Drop old - - 14 Apr 2012; Andreas Schuerch ccp4-6.1.3-r1.ebuild: - x86 stable, see bug 376463 - - 16 Oct 2011; Samuli Suominen ccp4-6.1.3-r1.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen ccp4-6.1.3-r1.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon ccp4-6.1.3-r1.ebuild: - Marked stable on AMD64 without rigorous testing as it is part of a tangled - web of intricate dependencies for unfetchable/untestable packages. For bug - #376463 by Agostino "ago" Sarubbo. - - 07 Sep 2011; Justin Lecher ccp4-6.1.3-r1.ebuild, - metadata.xml: - keyworded *-linux, tested by me - - 21 Jun 2011; Justin Lecher ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild, ccp4-6.1.3.ebuild, - ccp4-6.1.3-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: - Added fortran-2.eclass support - - 16 Jan 2011; Kacper Kowalik ccp4-6.1.3-r1.ebuild: - marked ~ppc wrt #303931 - - 16 Dec 2010; Justin Lecher ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: - QA on quoting - - 16 Dec 2010; Justin Lecher ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: - Removal of fortran.eclass, #348851 - - 15 Jun 2010; Justin Lecher ccp4-6.1.3-r1.ebuild: - Fixed DEP VERSIONS - -*ccp4-6.1.3-r1 (22 May 2010) - - 22 May 2010; Justin Lecher +ccp4-6.1.3-r1.ebuild: - Try to fix bug 314053 - - 28 Mar 2010; Justin Lecher (jlec) ccp4-6.1.3.ebuild, - metadata.xml: - Changed USE balbes -> balbes and sci-libs/balbes to sci-chemistry/balbes - -*ccp4-6.1.3 (07 Feb 2010) - - 07 Feb 2010; Justin Lecher (jlec) +ccp4-6.1.3.ebuild, - metadata.xml: - Version Bump - Moved from monolithic package into split packages, this is the meta - package from now on - - 04 Mar 2009; Peter Alfredsen ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: - Fix trivial manpage collision, bug 260455. Thanks to Johan Hattne - . - - 03 Jun 2008; Michael Sterrett ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: - remove reference to app-shells/csh which has been removed - - 14 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: - Install examples (Justin Lecher). - - 13 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: - Try harder to remove rasmol man pages (Justin Lecher). - - 08 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: - Remove message about sourcing setup scripts. - -*ccp4-6.0.2-r1 (08 Apr 2008) - - 08 Apr 2008; Donnie Berkholz ; - +files/6.0.2-gcc-4.1.2-idate-fix.patch, +ccp4-6.0.2-r1.ebuild: - (#175630, #201150) Fix build. Install setup scripts into /etc/profile.d/ - so they're sourced automatically upon login. In setup scripts, don't use - CLIBD before it's been set. Update to latest upstream patches. Deal with - non-gzip compression types. - - 22 Jul 2007; Donnie Berkholz ; ccp4-6.0.1-r1.ebuild: - Drop virtual/x11 references. - - 02 Jul 2007; Piotr Jaroszyński ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild: - (QA) RESTRICT clean up. - - 07 Apr 2007; Mike Frysinger ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild: - Convert *DESTTREE abuse into proper calls to the *into functions. - - 15 Mar 2007; Danny van Dyk ccp4-6.0.1-r1.ebuild, - ccp4-6.0.2.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 06 Jan 2007; Danny van Dyk -ccp4-6.0.1.ebuild: - QA: Removed unused versions. - -*ccp4-6.0.2 (24 Nov 2006) - - 24 Nov 2006; Donnie Berkholz ; - +files/6.0.2-dont-make-dirs-in-configure.patch, - +files/6.0.2-ppc-double-define-gerror.patch, +ccp4-6.0.2.ebuild: - Bump. - - 26 Sep 2006; Donnie Berkholz ; ccp4-6.0.1-r1.ebuild: - Stable on x86/ppc. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*ccp4-6.0.1-r1 (07 Aug 2006) - - 07 Aug 2006; Donnie Berkholz ; - +ccp4-6.0.1-r1.ebuild: - Add upstream patches. The build system won't accept LDFLAGS, so unset them. - (#142183) Source the setup script again in src_install() to make sure CBIN - and CCP4_LIB get set. Not doing this breaks USE=X because the Imakefiles use - them. Stop changing the value of CCP4_LIB, that was only necessary for the - bindir=/usr/bin, libdir=/usr/libdir install, which was too much work. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*ccp4-6.0.1 (16 Jun 2006) - - 16 Jun 2006; Donnie Berkholz ; - +files/6.0.1-dont-make-dirs-in-configure.patch, - +files/6.0.1-ppc-double-define-gerror.patch, - +files/ccp4i-default-to-firefox.patch, - +files/check-blas-lapack-pthread.patch, - +files/clipper-find-mccp4-includes.patch, - +files/create-mosflm-bindir.patch, +files/dont-build-rasmol.patch, - +files/make-ipmosflm-dir.patch, +files/make-mosflm-cbf-libdir.patch, - +files/make-mosflm-index-libdir.patch, +files/make-mosflm-libdir.patch, - +files/pass-clipper-enablevals.patch, +metadata.xml, +ccp4-6.0.1.ebuild: - Add CCP4, a popular protein X-ray crystallography toolkit. Relies on portage - auto-fixing RPATHs for now, because its build system consists of a bunch of - stuff thrown together into the same tarball. - diff --git a/sci-chemistry/ccp4/ChangeLog-2015 b/sci-chemistry/ccp4/ChangeLog-2015 new file mode 100644 index 00000000..02217853 --- /dev/null +++ b/sci-chemistry/ccp4/ChangeLog-2015 @@ -0,0 +1,161 @@ +# ChangeLog for sci-chemistry/ccp4 +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4/ChangeLog,v 1.35 2012/10/19 09:42:41 jlec Exp $ + + 19 Oct 2012; Justin Lecher ccp4-6.1.3-r1.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 26 Apr 2012; Justin Lecher -ccp4-6.0.1-r1.ebuild, + -ccp4-6.0.2.ebuild, -ccp4-6.0.2-r1.ebuild, -ccp4-6.1.3.ebuild: + Drop old + + 14 Apr 2012; Andreas Schuerch ccp4-6.1.3-r1.ebuild: + x86 stable, see bug 376463 + + 16 Oct 2011; Samuli Suominen ccp4-6.1.3-r1.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen ccp4-6.1.3-r1.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon ccp4-6.1.3-r1.ebuild: + Marked stable on AMD64 without rigorous testing as it is part of a tangled + web of intricate dependencies for unfetchable/untestable packages. For bug + #376463 by Agostino "ago" Sarubbo. + + 07 Sep 2011; Justin Lecher ccp4-6.1.3-r1.ebuild, + metadata.xml: + keyworded *-linux, tested by me + + 21 Jun 2011; Justin Lecher ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild, ccp4-6.1.3.ebuild, + ccp4-6.1.3-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: + Added fortran-2.eclass support + + 16 Jan 2011; Kacper Kowalik ccp4-6.1.3-r1.ebuild: + marked ~ppc wrt #303931 + + 16 Dec 2010; Justin Lecher ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: + QA on quoting + + 16 Dec 2010; Justin Lecher ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: + Removal of fortran.eclass, #348851 + + 15 Jun 2010; Justin Lecher ccp4-6.1.3-r1.ebuild: + Fixed DEP VERSIONS + +*ccp4-6.1.3-r1 (22 May 2010) + + 22 May 2010; Justin Lecher +ccp4-6.1.3-r1.ebuild: + Try to fix bug 314053 + + 28 Mar 2010; Justin Lecher (jlec) ccp4-6.1.3.ebuild, + metadata.xml: + Changed USE balbes -> balbes and sci-libs/balbes to sci-chemistry/balbes + +*ccp4-6.1.3 (07 Feb 2010) + + 07 Feb 2010; Justin Lecher (jlec) +ccp4-6.1.3.ebuild, + metadata.xml: + Version Bump + Moved from monolithic package into split packages, this is the meta + package from now on + + 04 Mar 2009; Peter Alfredsen ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: + Fix trivial manpage collision, bug 260455. Thanks to Johan Hattne + . + + 03 Jun 2008; Michael Sterrett ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild, ccp4-6.0.2-r1.ebuild: + remove reference to app-shells/csh which has been removed + + 14 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: + Install examples (Justin Lecher). + + 13 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: + Try harder to remove rasmol man pages (Justin Lecher). + + 08 Apr 2008; Donnie Berkholz ; ccp4-6.0.2-r1.ebuild: + Remove message about sourcing setup scripts. + +*ccp4-6.0.2-r1 (08 Apr 2008) + + 08 Apr 2008; Donnie Berkholz ; + +files/6.0.2-gcc-4.1.2-idate-fix.patch, +ccp4-6.0.2-r1.ebuild: + (#175630, #201150) Fix build. Install setup scripts into /etc/profile.d/ + so they're sourced automatically upon login. In setup scripts, don't use + CLIBD before it's been set. Update to latest upstream patches. Deal with + non-gzip compression types. + + 22 Jul 2007; Donnie Berkholz ; ccp4-6.0.1-r1.ebuild: + Drop virtual/x11 references. + + 02 Jul 2007; Piotr Jaroszyński ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild: + (QA) RESTRICT clean up. + + 07 Apr 2007; Mike Frysinger ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild: + Convert *DESTTREE abuse into proper calls to the *into functions. + + 15 Mar 2007; Danny van Dyk ccp4-6.0.1-r1.ebuild, + ccp4-6.0.2.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 06 Jan 2007; Danny van Dyk -ccp4-6.0.1.ebuild: + QA: Removed unused versions. + +*ccp4-6.0.2 (24 Nov 2006) + + 24 Nov 2006; Donnie Berkholz ; + +files/6.0.2-dont-make-dirs-in-configure.patch, + +files/6.0.2-ppc-double-define-gerror.patch, +ccp4-6.0.2.ebuild: + Bump. + + 26 Sep 2006; Donnie Berkholz ; ccp4-6.0.1-r1.ebuild: + Stable on x86/ppc. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*ccp4-6.0.1-r1 (07 Aug 2006) + + 07 Aug 2006; Donnie Berkholz ; + +ccp4-6.0.1-r1.ebuild: + Add upstream patches. The build system won't accept LDFLAGS, so unset them. + (#142183) Source the setup script again in src_install() to make sure CBIN + and CCP4_LIB get set. Not doing this breaks USE=X because the Imakefiles use + them. Stop changing the value of CCP4_LIB, that was only necessary for the + bindir=/usr/bin, libdir=/usr/libdir install, which was too much work. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*ccp4-6.0.1 (16 Jun 2006) + + 16 Jun 2006; Donnie Berkholz ; + +files/6.0.1-dont-make-dirs-in-configure.patch, + +files/6.0.1-ppc-double-define-gerror.patch, + +files/ccp4i-default-to-firefox.patch, + +files/check-blas-lapack-pthread.patch, + +files/clipper-find-mccp4-includes.patch, + +files/create-mosflm-bindir.patch, +files/dont-build-rasmol.patch, + +files/make-ipmosflm-dir.patch, +files/make-mosflm-cbf-libdir.patch, + +files/make-mosflm-index-libdir.patch, +files/make-mosflm-libdir.patch, + +files/pass-clipper-enablevals.patch, +metadata.xml, +ccp4-6.0.1.ebuild: + Add CCP4, a popular protein X-ray crystallography toolkit. Relies on portage + auto-fixing RPATHs for now, because its build system consists of a bunch of + stuff thrown together into the same tarball. + diff --git a/sci-chemistry/ccp4i/ChangeLog b/sci-chemistry/ccp4i/ChangeLog deleted file mode 100644 index b7f0f347..00000000 --- a/sci-chemistry/ccp4i/ChangeLog +++ /dev/null @@ -1,76 +0,0 @@ -# ChangeLog for sci-chemistry/ccp4i -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4i/ChangeLog,v 1.18 2015/03/27 10:48:40 jlec Exp $ - - 27 Mar 2015; Justin Lecher -ccp4i-6.1.3-r3.ebuild: - Drop old - - 27 Mar 2015; Agostino Sarubbo ccp4i-6.1.3-r4.ebuild: - Stable for x86, wrt bug #544422 - - 27 Mar 2015; Agostino Sarubbo ccp4i-6.1.3-r4.ebuild: - Stable for amd64, wrt bug #544422 - - 25 Mar 2015; Justin Lecher ccp4i-6.1.3-r4.ebuild: - Drop unnecessary PYTHON_DEPEND - -*ccp4i-6.1.3-r4 (09 Mar 2015) - - 09 Mar 2015; Justin Lecher +ccp4i-6.1.3-r4.ebuild: - Bump to new python.eclasses - - 06 Jan 2014; Justin Lecher ccp4i-6.1.3-r3.ebuild: - Punt base.eclass - - 13 Dec 2012; Justin Lecher ccp4i-6.1.3-r3.ebuild, - metadata.xml: - Add missing dep on sci-libs/ccp4-libs, #405867 - - 28 Apr 2012; Justin Lecher -ccp4i-6.1.3-r2.ebuild: - Drop old - - 07 Sep 2011; Justin Lecher ccp4i-6.1.3-r3.ebuild: - EAPI bump, fixed usage of virtualx eclass - - 07 Aug 2011; Markos Chandras ccp4i-6.1.3-r3.ebuild: - Stable on amd64 wrt bug #375907 - - 07 Aug 2011; Pawel Hajdan jr ccp4i-6.1.3-r3.ebuild: - x86 stable wrt bug #375907 - - 23 Jul 2011; Justin Lecher ccp4i-6.1.3-r3.ebuild, - metadata.xml: - Add verbose postinst msg, #375907 - - 16 Jan 2011; Kacper Kowalik ccp4i-6.1.3-r3.ebuild: - marked ~ppc wrt #303931 - -*ccp4i-6.1.3-r3 (16 Jun 2010) - - 16 Jun 2010; Justin Lecher +ccp4i-6.1.3-r3.ebuild: - Attempts tp fix bug 314053 - -*ccp4i-6.1.3-r2 (25 Apr 2010) - - 25 Apr 2010; Justin Lecher - files/6.1.3-rename-rapper.patch, +ccp4i-6.1.3-r2.ebuild, - files/6.1.3-rename-superpose.patch, files/6.1.3-rename-truncate.patch, - -ccp4i-6.1.3-r1.ebuild: - Fixes missing renames, thanks Johan Hattne for giving the patches, #314053 - - 22 Apr 2010; Justin Lecher ccp4i-6.1.3-r1.ebuild: - Fixes for Python ABIs, keyworded for *-linux - -*ccp4i-6.1.3-r1 (20 Mar 2010) - - 20 Mar 2010; Justin Lecher (jlec) - +ccp4i-6.1.3-r1.ebuild: - Including arpwarp interface - -*ccp4i-6.1.3 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/6.1.3-fix-baubles.patch, +files/6.1.3-rename-rapper.patch, - +files/6.1.3-rename-superpose.patch, +files/6.1.3-rename-truncate.patch, - +ccp4i-6.1.3.ebuild, +metadata.xml: - Interface splitted from ccp4 diff --git a/sci-chemistry/ccp4i/ChangeLog-2015 b/sci-chemistry/ccp4i/ChangeLog-2015 new file mode 100644 index 00000000..b7f0f347 --- /dev/null +++ b/sci-chemistry/ccp4i/ChangeLog-2015 @@ -0,0 +1,76 @@ +# ChangeLog for sci-chemistry/ccp4i +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccp4i/ChangeLog,v 1.18 2015/03/27 10:48:40 jlec Exp $ + + 27 Mar 2015; Justin Lecher -ccp4i-6.1.3-r3.ebuild: + Drop old + + 27 Mar 2015; Agostino Sarubbo ccp4i-6.1.3-r4.ebuild: + Stable for x86, wrt bug #544422 + + 27 Mar 2015; Agostino Sarubbo ccp4i-6.1.3-r4.ebuild: + Stable for amd64, wrt bug #544422 + + 25 Mar 2015; Justin Lecher ccp4i-6.1.3-r4.ebuild: + Drop unnecessary PYTHON_DEPEND + +*ccp4i-6.1.3-r4 (09 Mar 2015) + + 09 Mar 2015; Justin Lecher +ccp4i-6.1.3-r4.ebuild: + Bump to new python.eclasses + + 06 Jan 2014; Justin Lecher ccp4i-6.1.3-r3.ebuild: + Punt base.eclass + + 13 Dec 2012; Justin Lecher ccp4i-6.1.3-r3.ebuild, + metadata.xml: + Add missing dep on sci-libs/ccp4-libs, #405867 + + 28 Apr 2012; Justin Lecher -ccp4i-6.1.3-r2.ebuild: + Drop old + + 07 Sep 2011; Justin Lecher ccp4i-6.1.3-r3.ebuild: + EAPI bump, fixed usage of virtualx eclass + + 07 Aug 2011; Markos Chandras ccp4i-6.1.3-r3.ebuild: + Stable on amd64 wrt bug #375907 + + 07 Aug 2011; Pawel Hajdan jr ccp4i-6.1.3-r3.ebuild: + x86 stable wrt bug #375907 + + 23 Jul 2011; Justin Lecher ccp4i-6.1.3-r3.ebuild, + metadata.xml: + Add verbose postinst msg, #375907 + + 16 Jan 2011; Kacper Kowalik ccp4i-6.1.3-r3.ebuild: + marked ~ppc wrt #303931 + +*ccp4i-6.1.3-r3 (16 Jun 2010) + + 16 Jun 2010; Justin Lecher +ccp4i-6.1.3-r3.ebuild: + Attempts tp fix bug 314053 + +*ccp4i-6.1.3-r2 (25 Apr 2010) + + 25 Apr 2010; Justin Lecher + files/6.1.3-rename-rapper.patch, +ccp4i-6.1.3-r2.ebuild, + files/6.1.3-rename-superpose.patch, files/6.1.3-rename-truncate.patch, + -ccp4i-6.1.3-r1.ebuild: + Fixes missing renames, thanks Johan Hattne for giving the patches, #314053 + + 22 Apr 2010; Justin Lecher ccp4i-6.1.3-r1.ebuild: + Fixes for Python ABIs, keyworded for *-linux + +*ccp4i-6.1.3-r1 (20 Mar 2010) + + 20 Mar 2010; Justin Lecher (jlec) + +ccp4i-6.1.3-r1.ebuild: + Including arpwarp interface + +*ccp4i-6.1.3 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/6.1.3-fix-baubles.patch, +files/6.1.3-rename-rapper.patch, + +files/6.1.3-rename-superpose.patch, +files/6.1.3-rename-truncate.patch, + +ccp4i-6.1.3.ebuild, +metadata.xml: + Interface splitted from ccp4 diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog deleted file mode 100644 index fa3eebdf..00000000 --- a/sci-chemistry/ccpn/ChangeLog +++ /dev/null @@ -1,988 +0,0 @@ -# ChangeLog for sci-chemistry/ccpn -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.168 2015/04/21 13:00:03 jlec Exp $ - -*ccpn-2.4.2_p150421 (21 Apr 2015) - - 21 Apr 2015; Justin Lecher +ccpn-2.4.2_p150421.ebuild: - Today's python patches - -*ccpn-2.4.2_p150413 (13 Apr 2015) - - 13 Apr 2015; Justin Lecher +ccpn-2.4.2_p150413.ebuild: - Today's python patches - -*ccpn-2.4.2_p150325 (25 Mar 2015) - - 25 Mar 2015; Justin Lecher +ccpn-2.4.2_p150325.ebuild, - ccpn-2.4.1_p150226.ebuild, ccpn-2.4.2.ebuild: - Todays python patches - -*ccpn-2.4.2 (11 Mar 2015) - - 11 Mar 2015; Justin Lecher +ccpn-2.4.2.ebuild, - ccpn-2.4.1_p150226.ebuild: - Version Bump - - 05 Mar 2015; Justin Lecher -ccpn-2.4.1.ebuild, - -ccpn-2.4.1_p150108.ebuild, -ccpn-2.4.1_p150122.ebuild, - -ccpn-2.4.1_p150202.ebuild, -ccpn-2.4.1_p150223.ebuild, - -ccpn-2.4.1_p150224.ebuild: - drop old - -*ccpn-2.4.1_p150226 (26 Feb 2015) - - 26 Feb 2015; Justin Lecher +ccpn-2.4.1_p150226.ebuild, - files/analysis, files/dangle, files/dataShifter, files/depositionFileImporter, - files/eci, files/extendNmr, files/formatConverter, files/pipe2azara, - files/xeasy2azara: - Todays python patches; drop LD_LIBRARY_PATH from launcher - -*ccpn-2.4.1_p150224 (24 Feb 2015) - - 24 Feb 2015; Justin Lecher +ccpn-2.4.1_p150224.ebuild: - Todays python patches - -*ccpn-2.4.1_p150223 (23 Feb 2015) - - 23 Feb 2015; Justin Lecher +ccpn-2.4.1_p150223.ebuild: - Todays python patches - -*ccpn-2.4.1_p150202 (02 Feb 2015) - - 02 Feb 2015; Justin Lecher +ccpn-2.4.1_p150202.ebuild: - Todays python patches - - 22 Jan 2015; Justin Lecher -files/2.1.3_1-dynamics.patch, - -files/2.1.3_1-impl-dec.patch, -files/2.1.3_1-parallel.patch, - -files/2.2.1-parallel.patch, -files/2.2.2-parallel.patch, - -files/ccpn-2.4.0_p140425-lxml.patch: - Drop obsolete patches - -*ccpn-2.4.1_p150122 (22 Jan 2015) - - 22 Jan 2015; Justin Lecher -ccpn-2.3.1_p140425.ebuild, - -ccpn-2.4.0_p140915.ebuild, -ccpn-2.4.0_p140917.ebuild, - -ccpn-2.4.0_p140925.ebuild, -ccpn-2.4.1_p141008.ebuild, - -ccpn-2.4.1_p141020.ebuild, -ccpn-2.4.1_p141022.ebuild, - -ccpn-2.4.1_p141117.ebuild, -ccpn-2.4.1_p141204.ebuild, - -ccpn-2.4.1_p150105.ebuild, +ccpn-2.4.1_p150122.ebuild: - Todays python patches; dop old - -*ccpn-2.4.1_p150108 (08 Jan 2015) - - 08 Jan 2015; Justin Lecher +ccpn-2.4.1_p150108.ebuild: - Todays python patches - -*ccpn-2.4.1_p150105 (05 Jan 2015) - - 05 Jan 2015; Justin Lecher +ccpn-2.4.1_p150105.ebuild: - Todays python patches - -*ccpn-2.4.1_p141204 (04 Dec 2014) - - 04 Dec 2014; Justin Lecher +ccpn-2.4.1_p141204.ebuild: - Todays python patches - -*ccpn-2.4.1_p141117 (17 Nov 2014) - - 17 Nov 2014; Justin Lecher +ccpn-2.4.1_p141117.ebuild: - Todays python patches - -*ccpn-2.4.1_p141022 (22 Oct 2014) - - 22 Oct 2014; Justin Lecher +ccpn-2.4.1_p141022.ebuild: - Todays python patches - -*ccpn-2.4.1_p141020 (20 Oct 2014) - - 20 Oct 2014; Justin Lecher +ccpn-2.4.1_p141020.ebuild: - Todays python patches - - 08 Oct 2014; Justin Lecher ccpn-2.4.1_p141008.ebuild: - Uncomment variable - -*ccpn-2.4.1_p141008 (08 Oct 2014) - - 08 Oct 2014; Justin Lecher +ccpn-2.4.1_p141008.ebuild: - Todays python patches - -*ccpn-2.4.1 (06 Oct 2014) - - 06 Oct 2014; Justin Lecher +ccpn-2.4.1.ebuild: - Version Bump - -*ccpn-2.4.0_p140925 (25 Sep 2014) - - 25 Sep 2014; Justin Lecher +ccpn-2.4.0_p140925.ebuild: - Todays python patches - -*ccpn-2.4.0_p140917 (17 Sep 2014) - - 17 Sep 2014; Justin Lecher -ccpn-2.4.0_p140425.ebuild, - -ccpn-2.4.0_p140425-r1.ebuild, -ccpn-2.4.0_p140513.ebuild, - -ccpn-2.4.0_p140526.ebuild, -ccpn-2.4.0_p140605.ebuild, - -ccpn-2.4.0_p140614.ebuild, -ccpn-2.4.0_p140707.ebuild, - -ccpn-2.4.0_p140812.ebuild, +ccpn-2.4.0_p140917.ebuild: - Todays python patches; drop old - -*ccpn-2.4.0_p140915 (15 Sep 2014) - - 15 Sep 2014; Justin Lecher +ccpn-2.4.0_p140915.ebuild: - Latest Python patches - -*ccpn-2.4.0_p140812 (12 Aug 2014) - - 12 Aug 2014; Justin Lecher +ccpn-2.4.0_p140812.ebuild: - Todays python patches - -*ccpn-2.4.0_p140707 (07 Jul 2014) - - 07 Jul 2014; Justin Lecher +ccpn-2.4.0_p140707.ebuild: - Todays python patches - -*ccpn-2.4.0_p140614 (14 Jun 2014) - - 14 Jun 2014; Justin Lecher +ccpn-2.4.0_p140614.ebuild: - Bump to latest python patches - -*ccpn-2.4.0_p140605 (05 Jun 2014) - - 05 Jun 2014; Justin Lecher +ccpn-2.4.0_p140605.ebuild: - Todays python patches - -*ccpn-2.4.0_p140526 (26 May 2014) - - 26 May 2014; Justin Lecher +ccpn-2.4.0_p140526.ebuild: - Todays python patches - -*ccpn-2.4.0_p140513 (13 May 2014) - - 13 May 2014; Justin Lecher +ccpn-2.4.0_p140513.ebuild: - Todays python patches - -*ccpn-2.4.0_p140425-r1 (28 Apr 2014) - - 28 Apr 2014; Justin Lecher +ccpn-2.4.0_p140425-r1.ebuild, - +files/ccpn-2.4.0_p140425-lxml.patch: - Add patch to allow lxml as xml provider - -*ccpn-2.4.0_p140425 (25 Apr 2014) -*ccpn-2.3.1_p140425 (25 Apr 2014) - - 25 Apr 2014; Justin Lecher -ccpn-2.1.3.1_p100806.ebuild, - -ccpn-2.3.1.ebuild, -ccpn-2.3.1_p131119.ebuild, -ccpn-2.3.1_p131125.ebuild, - -ccpn-2.3.1_p131127.ebuild, -ccpn-2.3.1_p140120.ebuild, - -ccpn-2.3.1_p140131-r1.ebuild, -ccpn-2.3.1_p140205.ebuild, - -ccpn-2.3.1_p140310.ebuild, -ccpn-2.3.1_p140325.ebuild, - -ccpn-2.3.1_p140401.ebuild, +ccpn-2.3.1_p140425.ebuild, - +ccpn-2.4.0_p140425.ebuild: - Version Bump; drop old - -*ccpn-2.3.1_p140401 (01 Apr 2014) - - 01 Apr 2014; Justin Lecher +ccpn-2.3.1_p140401.ebuild: - Todays python patches - -*ccpn-2.3.1_p140325 (25 Mar 2014) - - 25 Mar 2014; Justin Lecher +ccpn-2.3.1_p140325.ebuild: - Todays python patches - -*ccpn-2.3.1_p140310 (10 Mar 2014) - - 10 Mar 2014; Justin Lecher +ccpn-2.3.1_p140310.ebuild: - Add todays python patches - -*ccpn-2.3.1_p140205 (05 Feb 2014) - - 05 Feb 2014; Justin Lecher +ccpn-2.3.1_p140205.ebuild: - Latest Python patches - -*ccpn-2.3.1_p140131-r1 (31 Jan 2014) - - 31 Jan 2014; Justin Lecher +ccpn-2.3.1_p140131-r1.ebuild, - -ccpn-2.3.1_p140131.ebuild: - Update patch - -*ccpn-2.3.1_p140131 (31 Jan 2014) - - 31 Jan 2014; Justin Lecher +ccpn-2.3.1_p140131.ebuild: - Add todays Python patches - -*ccpn-2.3.1_p140120 (20 Jan 2014) - - 20 Jan 2014; Justin Lecher +ccpn-2.3.1_p140120.ebuild: - Todays python patches - -*ccpn-2.3.1_p131127 (27 Nov 2013) - - 27 Nov 2013; Justin Lecher -ccpn-2.2.2_p121125.ebuild, - -ccpn-2.2.2_p130110.ebuild, -ccpn-2.2.2_p130116.ebuild, - -ccpn-2.2.2_p130213.ebuild, -ccpn-2.2.2_p130318.ebuild, - -ccpn-2.2.2_p130318-r1.ebuild, -ccpn-2.2.2_p130530.ebuild, - -ccpn-2.2.2_p130618.ebuild, -ccpn-2.2.2_p130705.ebuild, - -ccpn-2.3.1_p130813.ebuild, -ccpn-2.3.1_p130814.ebuild, - -ccpn-2.3.1_p130822.ebuild, -ccpn-2.3.1_p130918.ebuild, - -ccpn-2.3.1_p130930.ebuild, -ccpn-2.3.1_p131008.ebuild, - -ccpn-2.3.1_p131010.ebuild, -ccpn-2.3.1_p131015.ebuild, - -ccpn-2.3.1_p131018.ebuild, -ccpn-2.3.1_p131107.ebuild, - +ccpn-2.3.1_p131127.ebuild: - Todays pthon patches; drop old - -*ccpn-2.3.1_p131125 (25 Nov 2013) - - 25 Nov 2013; Justin Lecher +ccpn-2.3.1_p131125.ebuild: - Todays pthon patches - -*ccpn-2.3.1_p131119 (19 Nov 2013) - - 19 Nov 2013; Justin Lecher +ccpn-2.3.1_p131119.ebuild, - +files/talosn.patch: - Add todays python patches - -*ccpn-2.3.1_p131107 (07 Nov 2013) - - 07 Nov 2013; Justin Lecher +ccpn-2.3.1_p131107.ebuild: - Update Python patches - -*ccpn-2.3.1_p131018 (18 Oct 2013) - - 18 Oct 2013; Justin Lecher +ccpn-2.3.1_p131018.ebuild: - Todays python patches - -*ccpn-2.3.1_p131015 (15 Oct 2013) - - 15 Oct 2013; Justin Lecher +ccpn-2.3.1_p131015.ebuild: - Todays python patches - -*ccpn-2.3.1_p131010 (10 Oct 2013) - - 10 Oct 2013; Justin Lecher +ccpn-2.3.1_p131010.ebuild: - Todays python patches - -*ccpn-2.3.1_p131008 (08 Oct 2013) - - 08 Oct 2013; Justin Lecher +ccpn-2.3.1_p131008.ebuild: - Add latest python patches - -*ccpn-2.3.1_p130930 (30 Sep 2013) - - 30 Sep 2013; Justin Lecher +ccpn-2.3.1_p130930.ebuild: - Todays python patches - -*ccpn-2.3.1_p130918 (18 Sep 2013) - - 18 Sep 2013; Justin Lecher +ccpn-2.3.1_p130918.ebuild: - Add todays python updates - - 05 Sep 2013; Michał Górny ccpn-2.2.2_p130318-r1.ebuild, - ccpn-2.2.2_p130318.ebuild, ccpn-2.2.2_p130530.ebuild, - ccpn-2.2.2_p130618.ebuild, ccpn-2.2.2_p130705.ebuild, ccpn-2.3.1.ebuild, - ccpn-2.3.1_p130813.ebuild, ccpn-2.3.1_p130814.ebuild, - ccpn-2.3.1_p130822.ebuild: - Clean up PYTHON_COMPAT from old implementations. - -*ccpn-2.3.1_p130822 (22 Aug 2013) - - 22 Aug 2013; Justin Lecher -ccpn-2.3.1_p130819.ebuild, - +ccpn-2.3.1_p130822.ebuild: - Fix patch - - 20 Aug 2013; Justin Lecher ChangeLog: - Fix checksums - -*ccpn-2.3.1_p130819 (19 Aug 2013) - - 19 Aug 2013; Justin Lecher +ccpn-2.3.1_p130819.ebuild: - Todays python patches - -*ccpn-2.3.1_p130814 (14 Aug 2013) - - 14 Aug 2013; Justin Lecher +ccpn-2.3.1_p130814.ebuild: - Todays python patches - -*ccpn-2.3.1_p130813 (13 Aug 2013) - - 13 Aug 2013; Justin Lecher +ccpn-2.3.1_p130813.ebuild: - Add latest pyhton patches - -*ccpn-2.3.1 (08 Aug 2013) - - 08 Aug 2013; Justin Lecher -ccpn-2.3.0_p130705.ebuild, - -ccpn-2.3.0_p130709.ebuild, -ccpn-2.3.0_p130710.ebuild, - -ccpn-2.3.0_p130801.ebuild, +ccpn-2.3.1.ebuild, -files/2.3.0-parallel.patch, - +files/2.3.1-parallel.patch: - Version Bump, drop broken - -*ccpn-2.3.0_p130801 (01 Aug 2013) - - 01 Aug 2013; Justin Lecher +ccpn-2.3.0_p130801.ebuild: - Use latest upstream tarball and add latest python patches - -*ccpn-2.3.0_p130710 (10 Jul 2013) - - 10 Jul 2013; Justin Lecher +ccpn-2.3.0_p130710.ebuild: - Add latest python patches - -*ccpn-2.3.0_p130709 (09 Jul 2013) - - 09 Jul 2013; Justin Lecher +ccpn-2.3.0_p130709.ebuild: - Add latest python patches - -*ccpn-2.3.0_p130705 (05 Jul 2013) -*ccpn-2.2.2_p130705 (05 Jul 2013) - - 05 Jul 2013; Justin Lecher +ccpn-2.2.2_p130705.ebuild, - +ccpn-2.3.0_p130705.ebuild, +files/2.3.0-parallel.patch: - Version Bump - -*ccpn-2.2.2_p130618 (18 Jun 2013) - - 18 Jun 2013; Justin Lecher +ccpn-2.2.2_p130618.ebuild: - Add latest changes from upstream - -*ccpn-2.2.2_p130530 (30 May 2013) - - 30 May 2013; Justin Lecher +ccpn-2.2.2_p130530.ebuild: - Add latest python patches - - 29 May 2013; Justin Lecher ccpn-2.2.2_p130318.ebuild, - ccpn-2.2.2_p130318-r1.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) - - 22 Mar 2013; Justin Lecher ccpn-2.2.2_p130318-r1.ebuild: - Cut prefix not suffix - -*ccpn-2.2.2_p130318-r1 (21 Mar 2013) - - 21 Mar 2013; Justin Lecher +ccpn-2.2.2_p130318-r1.ebuild: - Fix for new python eclasses - -*ccpn-2.2.2_p130318 (18 Mar 2013) - - 18 Mar 2013; Justin Lecher +ccpn-2.2.2_p130318.ebuild: - Move to new python eclasses; add latest python patches - -*ccpn-2.2.2_p130213 (13 Feb 2013) - - 13 Feb 2013; Justin Lecher +ccpn-2.2.2_p130213.ebuild: - Todays Python patches - -*ccpn-2.2.2_p130116 (16 Jan 2013) - - 16 Jan 2013; Justin Lecher ccpn-2.2.2_p130110.ebuild, - +ccpn-2.2.2_p130116.ebuild, metadata.xml: - Todays python patches; fix for generic tcl/tk; drop unused local use - description - -*ccpn-2.2.2_p130110 (10 Jan 2013) - - 10 Jan 2013; Justin Lecher -ccpn-2.2.2_p120829.ebuild, - -ccpn-2.2.2_p120912.ebuild, -ccpn-2.2.2_p121012.ebuild, - -ccpn-2.2.2_p121112.ebuild, -ccpn-2.2.2_p121119.ebuild, - +ccpn-2.2.2_p130110.ebuild, metadata.xml: - Todays python patches, Drop old - -*ccpn-2.2.2_p121125 (25 Nov 2012) - - 25 Nov 2012; Justin Lecher +ccpn-2.2.2_p121125.ebuild: - Todays python patches, drop USE=extendnmr - -*ccpn-2.2.2_p121119 (19 Nov 2012) - - 19 Nov 2012; Justin Lecher +ccpn-2.2.2_p121119.ebuild: - Todays python patch - -*ccpn-2.2.2_p121112 (12 Nov 2012) - - 12 Nov 2012; Justin Lecher +ccpn-2.2.2_p121112.ebuild: - Todays Python Patches - -*ccpn-2.2.2_p121012 (12 Oct 2012) - - 12 Oct 2012; Justin Lecher +ccpn-2.2.2_p121012.ebuild: - Todays python patches - - 20 Sep 2012; Justin Lecher -ccpn-2.2.1_p120109.ebuild, - -ccpn-2.2.1_p120304.ebuild, -ccpn-2.2.2.ebuild, -ccpn-2.2.2_p120403.ebuild, - -ccpn-2.2.2_p120423.ebuild, -ccpn-2.2.2_p120511.ebuild, - -ccpn-2.2.2_p120709.ebuild, -ccpn-2.2.2_p120731.ebuild, - -ccpn-2.2.2_p120809-r1.ebuild, -ccpn-2.2.2_p120812.ebuild, - -ccpn-2.2.2_p120826.ebuild: - Drop old - -*ccpn-2.2.2_p120912 (12 Sep 2012) - - 12 Sep 2012; Justin Lecher +ccpn-2.2.2_p120912.ebuild: - Todays python patches - -*ccpn-2.2.2_p120829 (29 Aug 2012) - - 29 Aug 2012; Justin Lecher +ccpn-2.2.2_p120829.ebuild: - Todays python fixes - -*ccpn-2.2.2_p120826 (26 Aug 2012) - - 26 Aug 2012; Justin Lecher +ccpn-2.2.2_p120826.ebuild: - Todays python Patches - -*ccpn-2.2.2_p120812 (12 Aug 2012) - - 12 Aug 2012; Justin Lecher +ccpn-2.2.2_p120812.ebuild: - Todays python patches - -*ccpn-2.2.2_p120809-r1 (09 Aug 2012) - - 09 Aug 2012; Justin Lecher -ccpn-2.2.2_p120809.ebuild, - +ccpn-2.2.2_p120809-r1.ebuild: - Update the patches - -*ccpn-2.2.2_p120809 (09 Aug 2012) - - 09 Aug 2012; Justin Lecher +ccpn-2.2.2_p120809.ebuild: - Todays python fixes - -*ccpn-2.2.2_p120731 (31 Jul 2012) - - 31 Jul 2012; Justin Lecher +ccpn-2.2.2_p120731.ebuild: - Latest python patches - -*ccpn-2.2.2_p120709 (09 Jul 2012) - - 09 Jul 2012; Justin Lecher +ccpn-2.2.2_p120709.ebuild: - Add Todays python patches - - 06 Jun 2012; Justin Lecher ccpn-2.1.3.1_p100806.ebuild: - Fix tarball download location, #419849 - -*ccpn-2.2.2_p120511 (11 May 2012) - - 11 May 2012; Justin Lecher +ccpn-2.2.2_p120511.ebuild: - Bump to latest python fixes - - 23 Apr 2012; Justin Lecher Manifest: - Digest fix - -*ccpn-2.2.2_p120423 (23 Apr 2012) - - 23 Apr 2012; Justin Lecher +ccpn-2.2.2_p120423.ebuild: - Todays Python Patches - -*ccpn-2.2.2_p120403 (03 Apr 2012) - - 03 Apr 2012; Justin Lecher -files/2.1.5-parallel.patch, - -ccpn-2.1.5_p111213.ebuild, -ccpn-2.1.5_p111220.ebuild, - -ccpn-2.1.5_p111221.ebuild, -ccpn-2.1.5_p120109.ebuild, - -ccpn-2.1.5_p120304.ebuild, -ccpn-2.2.1_p111213.ebuild, - -ccpn-2.2.1_p111220.ebuild, -ccpn-2.2.1_p111221.ebuild, - +ccpn-2.2.2_p120403.ebuild: - Cleaned old, add latest python patches - -*ccpn-2.2.2 (03 Apr 2012) - - 03 Apr 2012; Justin Lecher +files/2.2.2-parallel.patch, - +ccpn-2.2.2.ebuild: - Version Bump - -*ccpn-2.2.1_p120304 (04 Mar 2012) -*ccpn-2.1.5_p120304 (04 Mar 2012) - - 04 Mar 2012; Justin Lecher ccpn-2.1.3.1_p100806.ebuild, - ccpn-2.1.5_p120109.ebuild, +ccpn-2.1.5_p120304.ebuild, - ccpn-2.2.1_p120109.ebuild, +ccpn-2.2.1_p120304.ebuild: - Today's python patches - -*ccpn-2.2.1_p120109 (09 Jan 2012) -*ccpn-2.1.5_p120109 (09 Jan 2012) - - 09 Jan 2012; Justin Lecher +ccpn-2.1.5_p120109.ebuild, - +ccpn-2.2.1_p120109.ebuild: - Todays Python Patches - -*ccpn-2.2.1_p111221 (21 Dec 2011) -*ccpn-2.1.5_p111221 (21 Dec 2011) - - 21 Dec 2011; Justin Lecher +ccpn-2.1.5_p111221.ebuild, - +ccpn-2.2.1_p111221.ebuild: - Todays Python Patches - -*ccpn-2.2.1_p111220 (20 Dec 2011) -*ccpn-2.1.5_p111220 (20 Dec 2011) - - 20 Dec 2011; Justin Lecher -ccpn-2.1.5_p110602.ebuild, - -ccpn-2.1.5_p110629.ebuild, -ccpn-2.1.5_p110817.ebuild, - -ccpn-2.1.5_p110905.ebuild, -ccpn-2.1.5_p110926.ebuild, - -ccpn-2.1.5_p111011.ebuild, -ccpn-2.1.5_p111017.ebuild, - -ccpn-2.1.5_p111028.ebuild, -ccpn-2.1.5_p111124.ebuild, - +ccpn-2.1.5_p111220.ebuild, -ccpn-2.2.1_p110602.ebuild, - -ccpn-2.2.1_p110629.ebuild, -ccpn-2.2.1_p110817.ebuild, - -ccpn-2.2.1_p110905.ebuild, -ccpn-2.2.1_p110926.ebuild, - -ccpn-2.2.1_p111011.ebuild, -ccpn-2.2.1_p111017.ebuild, - -ccpn-2.2.1_p111019.ebuild, -ccpn-2.2.1_p111028.ebuild, - -ccpn-2.2.1_p111124.ebuild, +ccpn-2.2.1_p111220.ebuild: - Todays Python Patches, cleaned old - -*ccpn-2.2.1_p111213 (13 Dec 2011) -*ccpn-2.1.5_p111213 (13 Dec 2011) - - 13 Dec 2011; Justin Lecher +ccpn-2.1.5_p111213.ebuild, - +ccpn-2.2.1_p111213.ebuild: - Todays Python patches - -*ccpn-2.2.1_p111124 (24 Nov 2011) -*ccpn-2.1.5_p111124 (24 Nov 2011) - - 24 Nov 2011; Justin Lecher +ccpn-2.1.5_p111124.ebuild, - +ccpn-2.2.1_p111124.ebuild: - Todays Python patches - -*ccpn-2.2.1_p111028 (28 Oct 2011) -*ccpn-2.1.5_p111028 (28 Oct 2011) - - 28 Oct 2011; Justin Lecher +ccpn-2.1.5_p111028.ebuild, - +ccpn-2.2.1_p111028.ebuild: - Todays Python patches - -*ccpn-2.2.1_p111019 (19 Oct 2011) - - 19 Oct 2011; Justin Lecher +ccpn-2.2.1_p111019.ebuild, - ccpn-2.1.5_p110926.ebuild, ccpn-2.2.1_p111017.ebuild, - ccpn-2.2.1_p110926.ebuild, ccpn-2.1.5_p111017.ebuild, metadata.xml, - ccpn-2.2.1_p111011.ebuild, ccpn-2.1.5_p111011.ebuild: - Todays Python patches, fix for psipred32 - -*ccpn-2.2.1_p111017 (17 Oct 2011) -*ccpn-2.1.5_p111017 (17 Oct 2011) - - 17 Oct 2011; Justin Lecher +ccpn-2.2.1_p111017.ebuild, - +ccpn-2.1.5_p111017.ebuild, metadata.xml: - Todays Python patches - -*ccpn-2.2.1_p111011 (11 Oct 2011) -*ccpn-2.1.5_p111011 (11 Oct 2011) - - 11 Oct 2011; Justin Lecher -ccpn-2.1.5_p110928.ebuild, - +ccpn-2.1.5_p111011.ebuild, -ccpn-2.2.1_p110928.ebuild, - +ccpn-2.2.1_p111011.ebuild: - Added fix for python import - - 07 Oct 2011; Justin Lecher ccpn-2.1.5_p110602.ebuild, - ccpn-2.1.5_p110629.ebuild, ccpn-2.1.5_p110817.ebuild, - ccpn-2.1.5_p110905.ebuild, ccpn-2.1.5_p110926.ebuild, - ccpn-2.1.5_p110928.ebuild, ccpn-2.2.1_p110602.ebuild, - ccpn-2.2.1_p110629.ebuild, ccpn-2.2.1_p110817.ebuild, - ccpn-2.2.1_p110905.ebuild, ccpn-2.2.1_p110926.ebuild, - ccpn-2.2.1_p110928.ebuild: - Corrected version to aria patches for newer ccpn data model, kindly provided - by Tim Stevens - - 28 Sep 2011; Justin Lecher +ccpn-2.1.5_p110928.ebuild, - +ccpn-2.2.1_p110928.ebuild: - Move symlink createtion to the data package - -*ccpn-2.2.1_p110928 (28 Sep 2011) -*ccpn-2.1.5_p110928 (28 Sep 2011) - - 28 Sep 2011; Justin Lecher +ccpn-2.1.5_p110928.ebuild, - +ccpn-2.2.1_p110928.ebuild: - Move symlink create to the data package - -*ccpn-2.2.1_p110926 (27 Sep 2011) -*ccpn-2.1.5_p110926 (27 Sep 2011) - - 27 Sep 2011; Justin Lecher +ccpn-2.1.5_p110926.ebuild, - +ccpn-2.2.1_p110926.ebuild, files/analysis, files/dangle, files/dataShifter, - files/depositionFileImporter, files/eci, files/extendNmr, - files/formatConverter, files/pipe2azara, files/xeasy2azara: - Fixes psipred detection, python file patches - -*ccpn-2.2.1_p110905 (05 Sep 2011) -*ccpn-2.1.5_p110905 (05 Sep 2011) - - 05 Sep 2011; Justin Lecher +ccpn-2.1.5_p110905.ebuild, - +ccpn-2.2.1_p110905.ebuild: - Todays Python Patches - -*ccpn-2.2.1_p110817 (17 Aug 2011) -*ccpn-2.1.5_p110817 (17 Aug 2011) - - 17 Aug 2011; Justin Lecher +ccpn-2.1.5_p110817.ebuild, - +ccpn-2.2.1_p110817.ebuild: - Latest upstream fixes - -*ccpn-2.2.1_p110629 (29 Jun 2011) -*ccpn-2.1.5_p110629 (29 Jun 2011) - - 29 Jun 2011; Justin Lecher ccpn-2.1.3.1_p100806.ebuild, - -ccpn-2.1.5_p110202.ebuild, -ccpn-2.1.5_p110217.ebuild, - -ccpn-2.1.5_p110222.ebuild, -ccpn-2.1.5_p110226.ebuild, - -ccpn-2.1.5_p110308.ebuild, -ccpn-2.1.5_p110401.ebuild, - -ccpn-2.1.5_p110505.ebuild, -ccpn-2.1.5_p110526.ebuild, - -ccpn-2.1.5_p110527.ebuild, ccpn-2.1.5_p110602.ebuild, - +ccpn-2.1.5_p110629.ebuild, -ccpn-2.2.1_p110222.ebuild, - -ccpn-2.2.1_p110226.ebuild, -ccpn-2.2.1_p110308.ebuild, - -ccpn-2.2.1_p110401.ebuild, -ccpn-2.2.1_p110505.ebuild, - -ccpn-2.2.1_p110526.ebuild, -ccpn-2.2.1_p110527.ebuild, - ccpn-2.2.1_p110602.ebuild, +ccpn-2.2.1_p110629.ebuild, metadata.xml: - Cleaned old, python patches, fixed sed strings - -*ccpn-2.2.1_p110602 (02 Jun 2011) -*ccpn-2.1.5_p110602 (02 Jun 2011) - - 02 Jun 2011; Justin Lecher +ccpn-2.1.5_p110602.ebuild, - +ccpn-2.2.1_p110602.ebuild: - Todays Python patches - -*ccpn-2.2.1_p110527 (27 May 2011) -*ccpn-2.1.5_p110527 (27 May 2011) - - 27 May 2011; Justin Lecher +ccpn-2.1.5_p110527.ebuild, - +ccpn-2.2.1_p110527.ebuild: - Todays Python patches - -*ccpn-2.2.1_p110526 (26 May 2011) -*ccpn-2.1.5_p110526 (26 May 2011) - - 26 May 2011; Justin Lecher +ccpn-2.1.5_p110526.ebuild, - +ccpn-2.2.1_p110526.ebuild: - Todays Python patches - -*ccpn-2.2.1_p110505 (05 May 2011) -*ccpn-2.1.5_p110505 (05 May 2011) - - 05 May 2011; Justin Lecher +ccpn-2.1.5_p110505.ebuild, - +ccpn-2.2.1_p110505.ebuild: - Todays python stuff - -*ccpn-2.2.1_p110401 (01 Apr 2011) -*ccpn-2.1.5_p110401 (01 Apr 2011) - - 01 Apr 2011; Justin Lecher +ccpn-2.1.5_p110401.ebuild, - +ccpn-2.2.1_p110401.ebuild: - Upstream changes to python modul added - -*ccpn-2.2.1_p110308 (08 Mar 2011) -*ccpn-2.1.5_p110308 (08 Mar 2011) - - 08 Mar 2011; Justin Lecher +ccpn-2.1.5_p110308.ebuild, - +ccpn-2.2.1_p110308.ebuild: - Today Python fixes - -*ccpn-2.2.1_p110226 (26 Feb 2011) -*ccpn-2.1.5_p110226 (26 Feb 2011) - - 26 Feb 2011; Justin Lecher +ccpn-2.1.5_p110226.ebuild, - +ccpn-2.2.1_p110226.ebuild: - Today's Python patches - -*ccpn-2.2.1_p110222 (22 Feb 2011) -*ccpn-2.1.5_p110222 (22 Feb 2011) - - 22 Feb 2011; Justin Lecher +files/2.2.1-parallel.patch, - +files/xeasy2azara, +ccpn-2.1.5_p110222.ebuild, +ccpn-2.2.1_p110222.ebuild: - Version Bump and python patches - -*ccpn-2.1.5_p110217 (17 Feb 2011) - - 17 Feb 2011; Justin Lecher -ccpn-2.1.5_p110215.ebuild, - +ccpn-2.1.5_p110217.ebuild: - Fix for python patches - - 16 Feb 2011; Justin Lecher ccpn-2.1.5_p110215.ebuild: - Fix Patch - -*ccpn-2.1.5_p110215 (15 Feb 2011) - - 15 Feb 2011; Justin Lecher +ccpn-2.1.5_p110215.ebuild: - Today Python Patches - -*ccpn-2.1.5_p110202 (02 Feb 2011) - - 02 Feb 2011; Justin Lecher -ccpn-2.1.5_p110105.ebuild, - -ccpn-2.1.5_p110113.ebuild, -ccpn-2.1.5_p110125.ebuild, - +ccpn-2.1.5_p110202.ebuild: - Pyhton Bump, Fixes for new X server and nvidia drivers - -*ccpn-2.1.5_p110125 (25 Jan 2011) - - 25 Jan 2011; Justin Lecher +ccpn-2.1.5_p110125.ebuild: - Todays Python patch - - 17 Jan 2011; Justin Lecher ccpn-2.1.5_p110105.ebuild, - ccpn-2.1.5_p110113.ebuild: - Correct compilation against python on prefix - -*ccpn-2.1.5_p110113 (13 Jan 2011) - - 13 Jan 2011; Justin Lecher +ccpn-2.1.5_p110113.ebuild: - Python patches included from today - -*ccpn-2.1.5_p110105 (05 Jan 2011) - - 05 Jan 2011; Justin Lecher -ccpn-2.1.5_p101114.ebuild, - -ccpn-2.1.5_p101201.ebuild, -ccpn-2.1.5_p110103.ebuild, - +ccpn-2.1.5_p110105.ebuild: - Went back to single python installation, cleaned old - -*ccpn-2.1.5_p110103 (04 Jan 2011) - - 04 Jan 2011; Justin Lecher +ccpn-2.1.5_p110103.ebuild: - Version Bump - -*ccpn-2.1.5_p101201 (05 Dec 2010) - - 05 Dec 2010; Justin Lecher +ccpn-2.1.5_p101201.ebuild: - Python Stuff bump - -*ccpn-2.1.5_p101114 (14 Nov 2010) - - 14 Nov 2010; Justin Lecher -ccpn-2.1.5_p101020.ebuild, - -ccpn-2.1.5_p101024.ebuild, -ccpn-2.1.5_p101104.ebuild, - -ccpn-2.1.5_p101106.ebuild, +ccpn-2.1.5_p101114.ebuild: - Version Bump, fix for circular deps - -*ccpn-2.1.5_p101106 (08 Nov 2010) - - 08 Nov 2010; Justin Lecher +ccpn-2.1.5_p101106.ebuild: - Version Bump - -*ccpn-2.1.5_p101104 (04 Nov 2010) - - 04 Nov 2010; Justin Lecher +ccpn-2.1.5_p101104.ebuild: - Version Bump - -*ccpn-2.1.5_p101024 (24 Oct 2010) - - 24 Oct 2010; Justin Lecher - -ccpn-2.1.5_p100921-r2.ebuild, -ccpn-2.1.5_p100924.ebuild, - -ccpn-2.1.5_p100927.ebuild, -ccpn-2.1.5_p101013.ebuild, - +ccpn-2.1.5_p101024.ebuild: - Version Bump, removed old - -*ccpn-2.1.5_p101020 (20 Oct 2010) - - 20 Oct 2010; Justin Lecher +ccpn-2.1.5_p101020.ebuild, - metadata.xml: - Version Bump and add support for extendNMR - -*ccpn-2.1.5_p101013 (13 Oct 2010) - - 13 Oct 2010; Justin Lecher +ccpn-2.1.5_p101013.ebuild: - Todays Python Patches - - 30 Sep 2010; Markus Meier ccpn-2.1.3.1_p100806.ebuild: - x86 stable, bug #338528 - - 27 Sep 2010; Markos Chandras - ccpn-2.1.3.1_p100806.ebuild: - Stable on amd64 wrt bug #338528 - - 30 Sep 2010; Justin Lecher ccpn-2.1.5_p100927.ebuild: - Added dev-python/pyglet as opengl dep - -*ccpn-2.1.5_p100927 (27 Sep 2010) - - 27 Sep 2010; Justin Lecher +ccpn-2.1.5_p100927.ebuild: - Version Bump - -*ccpn-2.1.5_p100924 (24 Sep 2010) - - 24 Sep 2010; Justin Lecher +ccpn-2.1.5_p100924.ebuild: - Todays Python Patches - -*ccpn-2.1.5_p100921 (21 Sep 2010) -*ccpn-2.1.3.1_p100806 (21 Sep 2010) - - 21 Sep 2010; Justin Lecher +files/2.1.5-parallel.patch, - -ccpn-2.1.2.1_p100216.ebuild, -ccpn-2.1.3.1_p100519.ebuild, - -ccpn-2.1.3.1_p100607.ebuild, -ccpn-2.1.3.1_p100628.ebuild, - -ccpn-2.1.3.1_p100713.ebuild, +ccpn-2.1.3.1_p100806.ebuild, - +ccpn-2.1.5_p100921-r2.ebuild, +files/depositionFileImporter, - +files/extendNmr: - Version Bump, splitted sci-libs/ccpn-data out, removed old - - 16 Sep 2010; Tomáš Chvátal - ccpn-2.1.2.1_p100216.ebuild, ccpn-2.1.3.1_p100519.ebuild, - ccpn-2.1.3.1_p100607.ebuild, ccpn-2.1.3.1_p100628.ebuild, - ccpn-2.1.3.1_p100713.ebuild: - virtual/glut -> media-libs/glut - -*ccpn-2.1.3.1_p100713 (13 Jul 2010) - - 13 Jul 2010; Justin Lecher - -files/2.1.2_1-parallel.patch, +ccpn-2.1.3.1_p100713.ebuild, - -files/2.1.3-dynamics.patch, -files/2.1.3-parallel.patch, - +files/2.1.3_1-impl-dec.patch: - Python patches and fix for implicit declaration (gone upstream) - -*ccpn-2.1.3.1_p100628 (28 Jun 2010) - - 28 Jun 2010; Justin Lecher +ccpn-2.1.3.1_p100628.ebuild: - Version Bump - -*ccpn-2.1.3.1_p100607 (07 Jun 2010) - - 07 Jun 2010; Justin Lecher -ccpn-2.1.3.ebuild, - -ccpn-2.1.3.1.ebuild, -ccpn-2.1.3.1_p100422.ebuild, - +ccpn-2.1.3.1_p100607.ebuild: - Python updates & cleanup of old versions - -*ccpn-2.1.3.1_p100519 (19 May 2010) - - 19 May 2010; Justin Lecher -ccpn-2.1.3.1_p100406.ebuild, - -ccpn-2.1.3.1_p100409.ebuild, -ccpn-2.1.3.1_p100415.ebuild, - +ccpn-2.1.3.1_p100519.ebuild: - Todays Python patches - -*ccpn-2.1.3.1_p100422 (22 Apr 2010) - - 22 Apr 2010; Justin Lecher -ccpn-2.1.3.1_p100308.ebuild, - -ccpn-2.1.3.1_p100311.ebuild, -ccpn-2.1.3.1_p100312.ebuild, - -ccpn-2.1.3.1_p100313.ebuild, -ccpn-2.1.3.1_p100318.ebuild, - -ccpn-2.1.3.1_p100318-r1.ebuild, -ccpn-2.1.3.1_p100326.ebuild, - -ccpn-2.1.3.1_p100327.ebuild, -ccpn-2.1.3.1_p100330.ebuild, - +ccpn-2.1.3.1_p100422.ebuild: - Todays python patches, removed old versions - -*ccpn-2.1.3.1_p100415 (15 Apr 2010) - - 15 Apr 2010; Justin Lecher +ccpn-2.1.3.1_p100415.ebuild: - Todays Python Patches - -*ccpn-2.1.3.1_p100409 (09 Apr 2010) - - 09 Apr 2010; Justin Lecher ccpn-2.1.3.1_p100406.ebuild, - +ccpn-2.1.3.1_p100409.ebuild: - Todays Python Patches - -*ccpn-2.1.3.1_p100406 (06 Apr 2010) - - 06 Apr 2010; Justin Lecher +ccpn-2.1.3.1_p100406.ebuild: - Todays Python Patches - -*ccpn-2.1.3.1_p100330 (30 Mar 2010) - - 30 Mar 2010; Justin Lecher +ccpn-2.1.3.1_p100330.ebuild: - Todays python patches - -*ccpn-2.1.3.1_p100327 (27 Mar 2010) - - 27 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100327.ebuild: - Todays Python patches - -*ccpn-2.1.3.1_p100326 (26 Mar 2010) - - 26 Mar 2010; +ccpn-2.1.3.1_p100326.ebuild: - Todays Python patches added - -*ccpn-2.1.3.1_p100318-r1 (18 Mar 2010) - - 18 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100318-r1.ebuild: - Important fix from upstream - -*ccpn-2.1.3.1_p100318 (18 Mar 2010) - - 18 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100318.ebuild: - Todays Python patches - -*ccpn-2.1.3.1_p100313 (13 Mar 2010) - - 13 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100313.ebuild: - Todays python patches - -*ccpn-2.1.3.1_p100312 (12 Mar 2010) - - 12 Mar 2010; Justin Lecher - -ccpn-2.1.3.1_p100226-r1.ebuild, -ccpn-2.1.3.1_p100227.ebuild, - -ccpn-2.1.3.1_p100303.ebuild, +ccpn-2.1.3.1_p100312.ebuild: - Python changes added, cleaned old versions - -*ccpn-2.1.3.1_p100311 (11 Mar 2010) - - 11 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100311.ebuild: - Python changes added - -*ccpn-2.1.3.1_p100308 (08 Mar 2010) - - 08 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100308.ebuild: - Todays python patches - -*ccpn-2.1.3.1_p100303 (03 Mar 2010) - - 03 Mar 2010; Justin Lecher - +ccpn-2.1.3.1_p100303.ebuild: - Added todays python patches - -*ccpn-2.1.3.1_p100227 (27 Feb 2010) - - 27 Feb 2010; Justin Lecher - -ccpn-2.1.3.1_p100225.ebuild, +ccpn-2.1.3.1_p100227.ebuild: - Todays Python updates - -*ccpn-2.1.3.1_p100226-r1 (26 Feb 2010) - - 26 Feb 2010; Justin Lecher - -ccpn-2.1.3.1_p100226.ebuild, +ccpn-2.1.3.1_p100226-r1.ebuild: - Upstream corrected typo in python code - -*ccpn-2.1.3.1_p100226 (26 Feb 2010) - - 26 Feb 2010; Justin Lecher - +ccpn-2.1.3.1_p100226.ebuild: - Today's python patches added - -*ccpn-2.1.3.1_p100225 (25 Feb 2010) - - 25 Feb 2010; Justin Lecher - +ccpn-2.1.3.1_p100225.ebuild: - Today's python patches added - -*ccpn-2.1.3.1 (18 Feb 2010) - - 18 Feb 2010; Justin Lecher - +files/2.1.3_1-dynamics.patch, -ccpn-2.1.2.1_p100204.ebuild, - +ccpn-2.1.3.1.ebuild, +files/2.1.3_1-parallel.patch, - -ccpn-2.1.2.1_p100213.ebuild: - Version bump and old ones removed - -*ccpn-2.1.3 (17 Feb 2010) - - 17 Feb 2010; Justin Lecher - +files/2.1.3-dynamics.patch, +ccpn-2.1.3.ebuild, - +files/2.1.3-parallel.patch: - Version bump, keyworded for amd64-linux and x86-linux - -*ccpn-2.1.2.1_p100216 (16 Feb 2010) - - 16 Feb 2010; Justin Lecher - +ccpn-2.1.2.1_p100216.ebuild: - Added latest python patches - - 13 Feb 2010; Justin Lecher - +files/2.1.2_1-parallel.patch, ccpn-2.1.2.1_p100204.ebuild, - ccpn-2.1.2.1_p100213.ebuild: - Fixed parallel build problems, bug 304959 - -*ccpn-2.1.2.1_p100213 (13 Feb 2010) - - 13 Feb 2010; Justin Lecher - +ccpn-2.1.2.1_p100213.ebuild: - Added todays python patches - - 06 Feb 2010; Justin Lecher - ccpn-2.1.2.1_p100204.ebuild: - RESTRICT_PYTHON_ABIS="2.4 3.*" - -*ccpn-2.1.2.1_p100204 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher +files/analysis, - +files/dangle, +files/dataShifter, +files/eci, +files/formatConverter, - +files/pipe2azara, +ccpn-2.1.2.1_p100204.ebuild, +metadata.xml: - Initial commit diff --git a/sci-chemistry/ccpn/ChangeLog-2015 b/sci-chemistry/ccpn/ChangeLog-2015 new file mode 100644 index 00000000..fa3eebdf --- /dev/null +++ b/sci-chemistry/ccpn/ChangeLog-2015 @@ -0,0 +1,988 @@ +# ChangeLog for sci-chemistry/ccpn +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.168 2015/04/21 13:00:03 jlec Exp $ + +*ccpn-2.4.2_p150421 (21 Apr 2015) + + 21 Apr 2015; Justin Lecher +ccpn-2.4.2_p150421.ebuild: + Today's python patches + +*ccpn-2.4.2_p150413 (13 Apr 2015) + + 13 Apr 2015; Justin Lecher +ccpn-2.4.2_p150413.ebuild: + Today's python patches + +*ccpn-2.4.2_p150325 (25 Mar 2015) + + 25 Mar 2015; Justin Lecher +ccpn-2.4.2_p150325.ebuild, + ccpn-2.4.1_p150226.ebuild, ccpn-2.4.2.ebuild: + Todays python patches + +*ccpn-2.4.2 (11 Mar 2015) + + 11 Mar 2015; Justin Lecher +ccpn-2.4.2.ebuild, + ccpn-2.4.1_p150226.ebuild: + Version Bump + + 05 Mar 2015; Justin Lecher -ccpn-2.4.1.ebuild, + -ccpn-2.4.1_p150108.ebuild, -ccpn-2.4.1_p150122.ebuild, + -ccpn-2.4.1_p150202.ebuild, -ccpn-2.4.1_p150223.ebuild, + -ccpn-2.4.1_p150224.ebuild: + drop old + +*ccpn-2.4.1_p150226 (26 Feb 2015) + + 26 Feb 2015; Justin Lecher +ccpn-2.4.1_p150226.ebuild, + files/analysis, files/dangle, files/dataShifter, files/depositionFileImporter, + files/eci, files/extendNmr, files/formatConverter, files/pipe2azara, + files/xeasy2azara: + Todays python patches; drop LD_LIBRARY_PATH from launcher + +*ccpn-2.4.1_p150224 (24 Feb 2015) + + 24 Feb 2015; Justin Lecher +ccpn-2.4.1_p150224.ebuild: + Todays python patches + +*ccpn-2.4.1_p150223 (23 Feb 2015) + + 23 Feb 2015; Justin Lecher +ccpn-2.4.1_p150223.ebuild: + Todays python patches + +*ccpn-2.4.1_p150202 (02 Feb 2015) + + 02 Feb 2015; Justin Lecher +ccpn-2.4.1_p150202.ebuild: + Todays python patches + + 22 Jan 2015; Justin Lecher -files/2.1.3_1-dynamics.patch, + -files/2.1.3_1-impl-dec.patch, -files/2.1.3_1-parallel.patch, + -files/2.2.1-parallel.patch, -files/2.2.2-parallel.patch, + -files/ccpn-2.4.0_p140425-lxml.patch: + Drop obsolete patches + +*ccpn-2.4.1_p150122 (22 Jan 2015) + + 22 Jan 2015; Justin Lecher -ccpn-2.3.1_p140425.ebuild, + -ccpn-2.4.0_p140915.ebuild, -ccpn-2.4.0_p140917.ebuild, + -ccpn-2.4.0_p140925.ebuild, -ccpn-2.4.1_p141008.ebuild, + -ccpn-2.4.1_p141020.ebuild, -ccpn-2.4.1_p141022.ebuild, + -ccpn-2.4.1_p141117.ebuild, -ccpn-2.4.1_p141204.ebuild, + -ccpn-2.4.1_p150105.ebuild, +ccpn-2.4.1_p150122.ebuild: + Todays python patches; dop old + +*ccpn-2.4.1_p150108 (08 Jan 2015) + + 08 Jan 2015; Justin Lecher +ccpn-2.4.1_p150108.ebuild: + Todays python patches + +*ccpn-2.4.1_p150105 (05 Jan 2015) + + 05 Jan 2015; Justin Lecher +ccpn-2.4.1_p150105.ebuild: + Todays python patches + +*ccpn-2.4.1_p141204 (04 Dec 2014) + + 04 Dec 2014; Justin Lecher +ccpn-2.4.1_p141204.ebuild: + Todays python patches + +*ccpn-2.4.1_p141117 (17 Nov 2014) + + 17 Nov 2014; Justin Lecher +ccpn-2.4.1_p141117.ebuild: + Todays python patches + +*ccpn-2.4.1_p141022 (22 Oct 2014) + + 22 Oct 2014; Justin Lecher +ccpn-2.4.1_p141022.ebuild: + Todays python patches + +*ccpn-2.4.1_p141020 (20 Oct 2014) + + 20 Oct 2014; Justin Lecher +ccpn-2.4.1_p141020.ebuild: + Todays python patches + + 08 Oct 2014; Justin Lecher ccpn-2.4.1_p141008.ebuild: + Uncomment variable + +*ccpn-2.4.1_p141008 (08 Oct 2014) + + 08 Oct 2014; Justin Lecher +ccpn-2.4.1_p141008.ebuild: + Todays python patches + +*ccpn-2.4.1 (06 Oct 2014) + + 06 Oct 2014; Justin Lecher +ccpn-2.4.1.ebuild: + Version Bump + +*ccpn-2.4.0_p140925 (25 Sep 2014) + + 25 Sep 2014; Justin Lecher +ccpn-2.4.0_p140925.ebuild: + Todays python patches + +*ccpn-2.4.0_p140917 (17 Sep 2014) + + 17 Sep 2014; Justin Lecher -ccpn-2.4.0_p140425.ebuild, + -ccpn-2.4.0_p140425-r1.ebuild, -ccpn-2.4.0_p140513.ebuild, + -ccpn-2.4.0_p140526.ebuild, -ccpn-2.4.0_p140605.ebuild, + -ccpn-2.4.0_p140614.ebuild, -ccpn-2.4.0_p140707.ebuild, + -ccpn-2.4.0_p140812.ebuild, +ccpn-2.4.0_p140917.ebuild: + Todays python patches; drop old + +*ccpn-2.4.0_p140915 (15 Sep 2014) + + 15 Sep 2014; Justin Lecher +ccpn-2.4.0_p140915.ebuild: + Latest Python patches + +*ccpn-2.4.0_p140812 (12 Aug 2014) + + 12 Aug 2014; Justin Lecher +ccpn-2.4.0_p140812.ebuild: + Todays python patches + +*ccpn-2.4.0_p140707 (07 Jul 2014) + + 07 Jul 2014; Justin Lecher +ccpn-2.4.0_p140707.ebuild: + Todays python patches + +*ccpn-2.4.0_p140614 (14 Jun 2014) + + 14 Jun 2014; Justin Lecher +ccpn-2.4.0_p140614.ebuild: + Bump to latest python patches + +*ccpn-2.4.0_p140605 (05 Jun 2014) + + 05 Jun 2014; Justin Lecher +ccpn-2.4.0_p140605.ebuild: + Todays python patches + +*ccpn-2.4.0_p140526 (26 May 2014) + + 26 May 2014; Justin Lecher +ccpn-2.4.0_p140526.ebuild: + Todays python patches + +*ccpn-2.4.0_p140513 (13 May 2014) + + 13 May 2014; Justin Lecher +ccpn-2.4.0_p140513.ebuild: + Todays python patches + +*ccpn-2.4.0_p140425-r1 (28 Apr 2014) + + 28 Apr 2014; Justin Lecher +ccpn-2.4.0_p140425-r1.ebuild, + +files/ccpn-2.4.0_p140425-lxml.patch: + Add patch to allow lxml as xml provider + +*ccpn-2.4.0_p140425 (25 Apr 2014) +*ccpn-2.3.1_p140425 (25 Apr 2014) + + 25 Apr 2014; Justin Lecher -ccpn-2.1.3.1_p100806.ebuild, + -ccpn-2.3.1.ebuild, -ccpn-2.3.1_p131119.ebuild, -ccpn-2.3.1_p131125.ebuild, + -ccpn-2.3.1_p131127.ebuild, -ccpn-2.3.1_p140120.ebuild, + -ccpn-2.3.1_p140131-r1.ebuild, -ccpn-2.3.1_p140205.ebuild, + -ccpn-2.3.1_p140310.ebuild, -ccpn-2.3.1_p140325.ebuild, + -ccpn-2.3.1_p140401.ebuild, +ccpn-2.3.1_p140425.ebuild, + +ccpn-2.4.0_p140425.ebuild: + Version Bump; drop old + +*ccpn-2.3.1_p140401 (01 Apr 2014) + + 01 Apr 2014; Justin Lecher +ccpn-2.3.1_p140401.ebuild: + Todays python patches + +*ccpn-2.3.1_p140325 (25 Mar 2014) + + 25 Mar 2014; Justin Lecher +ccpn-2.3.1_p140325.ebuild: + Todays python patches + +*ccpn-2.3.1_p140310 (10 Mar 2014) + + 10 Mar 2014; Justin Lecher +ccpn-2.3.1_p140310.ebuild: + Add todays python patches + +*ccpn-2.3.1_p140205 (05 Feb 2014) + + 05 Feb 2014; Justin Lecher +ccpn-2.3.1_p140205.ebuild: + Latest Python patches + +*ccpn-2.3.1_p140131-r1 (31 Jan 2014) + + 31 Jan 2014; Justin Lecher +ccpn-2.3.1_p140131-r1.ebuild, + -ccpn-2.3.1_p140131.ebuild: + Update patch + +*ccpn-2.3.1_p140131 (31 Jan 2014) + + 31 Jan 2014; Justin Lecher +ccpn-2.3.1_p140131.ebuild: + Add todays Python patches + +*ccpn-2.3.1_p140120 (20 Jan 2014) + + 20 Jan 2014; Justin Lecher +ccpn-2.3.1_p140120.ebuild: + Todays python patches + +*ccpn-2.3.1_p131127 (27 Nov 2013) + + 27 Nov 2013; Justin Lecher -ccpn-2.2.2_p121125.ebuild, + -ccpn-2.2.2_p130110.ebuild, -ccpn-2.2.2_p130116.ebuild, + -ccpn-2.2.2_p130213.ebuild, -ccpn-2.2.2_p130318.ebuild, + -ccpn-2.2.2_p130318-r1.ebuild, -ccpn-2.2.2_p130530.ebuild, + -ccpn-2.2.2_p130618.ebuild, -ccpn-2.2.2_p130705.ebuild, + -ccpn-2.3.1_p130813.ebuild, -ccpn-2.3.1_p130814.ebuild, + -ccpn-2.3.1_p130822.ebuild, -ccpn-2.3.1_p130918.ebuild, + -ccpn-2.3.1_p130930.ebuild, -ccpn-2.3.1_p131008.ebuild, + -ccpn-2.3.1_p131010.ebuild, -ccpn-2.3.1_p131015.ebuild, + -ccpn-2.3.1_p131018.ebuild, -ccpn-2.3.1_p131107.ebuild, + +ccpn-2.3.1_p131127.ebuild: + Todays pthon patches; drop old + +*ccpn-2.3.1_p131125 (25 Nov 2013) + + 25 Nov 2013; Justin Lecher +ccpn-2.3.1_p131125.ebuild: + Todays pthon patches + +*ccpn-2.3.1_p131119 (19 Nov 2013) + + 19 Nov 2013; Justin Lecher +ccpn-2.3.1_p131119.ebuild, + +files/talosn.patch: + Add todays python patches + +*ccpn-2.3.1_p131107 (07 Nov 2013) + + 07 Nov 2013; Justin Lecher +ccpn-2.3.1_p131107.ebuild: + Update Python patches + +*ccpn-2.3.1_p131018 (18 Oct 2013) + + 18 Oct 2013; Justin Lecher +ccpn-2.3.1_p131018.ebuild: + Todays python patches + +*ccpn-2.3.1_p131015 (15 Oct 2013) + + 15 Oct 2013; Justin Lecher +ccpn-2.3.1_p131015.ebuild: + Todays python patches + +*ccpn-2.3.1_p131010 (10 Oct 2013) + + 10 Oct 2013; Justin Lecher +ccpn-2.3.1_p131010.ebuild: + Todays python patches + +*ccpn-2.3.1_p131008 (08 Oct 2013) + + 08 Oct 2013; Justin Lecher +ccpn-2.3.1_p131008.ebuild: + Add latest python patches + +*ccpn-2.3.1_p130930 (30 Sep 2013) + + 30 Sep 2013; Justin Lecher +ccpn-2.3.1_p130930.ebuild: + Todays python patches + +*ccpn-2.3.1_p130918 (18 Sep 2013) + + 18 Sep 2013; Justin Lecher +ccpn-2.3.1_p130918.ebuild: + Add todays python updates + + 05 Sep 2013; Michał Górny ccpn-2.2.2_p130318-r1.ebuild, + ccpn-2.2.2_p130318.ebuild, ccpn-2.2.2_p130530.ebuild, + ccpn-2.2.2_p130618.ebuild, ccpn-2.2.2_p130705.ebuild, ccpn-2.3.1.ebuild, + ccpn-2.3.1_p130813.ebuild, ccpn-2.3.1_p130814.ebuild, + ccpn-2.3.1_p130822.ebuild: + Clean up PYTHON_COMPAT from old implementations. + +*ccpn-2.3.1_p130822 (22 Aug 2013) + + 22 Aug 2013; Justin Lecher -ccpn-2.3.1_p130819.ebuild, + +ccpn-2.3.1_p130822.ebuild: + Fix patch + + 20 Aug 2013; Justin Lecher ChangeLog: + Fix checksums + +*ccpn-2.3.1_p130819 (19 Aug 2013) + + 19 Aug 2013; Justin Lecher +ccpn-2.3.1_p130819.ebuild: + Todays python patches + +*ccpn-2.3.1_p130814 (14 Aug 2013) + + 14 Aug 2013; Justin Lecher +ccpn-2.3.1_p130814.ebuild: + Todays python patches + +*ccpn-2.3.1_p130813 (13 Aug 2013) + + 13 Aug 2013; Justin Lecher +ccpn-2.3.1_p130813.ebuild: + Add latest pyhton patches + +*ccpn-2.3.1 (08 Aug 2013) + + 08 Aug 2013; Justin Lecher -ccpn-2.3.0_p130705.ebuild, + -ccpn-2.3.0_p130709.ebuild, -ccpn-2.3.0_p130710.ebuild, + -ccpn-2.3.0_p130801.ebuild, +ccpn-2.3.1.ebuild, -files/2.3.0-parallel.patch, + +files/2.3.1-parallel.patch: + Version Bump, drop broken + +*ccpn-2.3.0_p130801 (01 Aug 2013) + + 01 Aug 2013; Justin Lecher +ccpn-2.3.0_p130801.ebuild: + Use latest upstream tarball and add latest python patches + +*ccpn-2.3.0_p130710 (10 Jul 2013) + + 10 Jul 2013; Justin Lecher +ccpn-2.3.0_p130710.ebuild: + Add latest python patches + +*ccpn-2.3.0_p130709 (09 Jul 2013) + + 09 Jul 2013; Justin Lecher +ccpn-2.3.0_p130709.ebuild: + Add latest python patches + +*ccpn-2.3.0_p130705 (05 Jul 2013) +*ccpn-2.2.2_p130705 (05 Jul 2013) + + 05 Jul 2013; Justin Lecher +ccpn-2.2.2_p130705.ebuild, + +ccpn-2.3.0_p130705.ebuild, +files/2.3.0-parallel.patch: + Version Bump + +*ccpn-2.2.2_p130618 (18 Jun 2013) + + 18 Jun 2013; Justin Lecher +ccpn-2.2.2_p130618.ebuild: + Add latest changes from upstream + +*ccpn-2.2.2_p130530 (30 May 2013) + + 30 May 2013; Justin Lecher +ccpn-2.2.2_p130530.ebuild: + Add latest python patches + + 29 May 2013; Justin Lecher ccpn-2.2.2_p130318.ebuild, + ccpn-2.2.2_p130318-r1.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) + + 22 Mar 2013; Justin Lecher ccpn-2.2.2_p130318-r1.ebuild: + Cut prefix not suffix + +*ccpn-2.2.2_p130318-r1 (21 Mar 2013) + + 21 Mar 2013; Justin Lecher +ccpn-2.2.2_p130318-r1.ebuild: + Fix for new python eclasses + +*ccpn-2.2.2_p130318 (18 Mar 2013) + + 18 Mar 2013; Justin Lecher +ccpn-2.2.2_p130318.ebuild: + Move to new python eclasses; add latest python patches + +*ccpn-2.2.2_p130213 (13 Feb 2013) + + 13 Feb 2013; Justin Lecher +ccpn-2.2.2_p130213.ebuild: + Todays Python patches + +*ccpn-2.2.2_p130116 (16 Jan 2013) + + 16 Jan 2013; Justin Lecher ccpn-2.2.2_p130110.ebuild, + +ccpn-2.2.2_p130116.ebuild, metadata.xml: + Todays python patches; fix for generic tcl/tk; drop unused local use + description + +*ccpn-2.2.2_p130110 (10 Jan 2013) + + 10 Jan 2013; Justin Lecher -ccpn-2.2.2_p120829.ebuild, + -ccpn-2.2.2_p120912.ebuild, -ccpn-2.2.2_p121012.ebuild, + -ccpn-2.2.2_p121112.ebuild, -ccpn-2.2.2_p121119.ebuild, + +ccpn-2.2.2_p130110.ebuild, metadata.xml: + Todays python patches, Drop old + +*ccpn-2.2.2_p121125 (25 Nov 2012) + + 25 Nov 2012; Justin Lecher +ccpn-2.2.2_p121125.ebuild: + Todays python patches, drop USE=extendnmr + +*ccpn-2.2.2_p121119 (19 Nov 2012) + + 19 Nov 2012; Justin Lecher +ccpn-2.2.2_p121119.ebuild: + Todays python patch + +*ccpn-2.2.2_p121112 (12 Nov 2012) + + 12 Nov 2012; Justin Lecher +ccpn-2.2.2_p121112.ebuild: + Todays Python Patches + +*ccpn-2.2.2_p121012 (12 Oct 2012) + + 12 Oct 2012; Justin Lecher +ccpn-2.2.2_p121012.ebuild: + Todays python patches + + 20 Sep 2012; Justin Lecher -ccpn-2.2.1_p120109.ebuild, + -ccpn-2.2.1_p120304.ebuild, -ccpn-2.2.2.ebuild, -ccpn-2.2.2_p120403.ebuild, + -ccpn-2.2.2_p120423.ebuild, -ccpn-2.2.2_p120511.ebuild, + -ccpn-2.2.2_p120709.ebuild, -ccpn-2.2.2_p120731.ebuild, + -ccpn-2.2.2_p120809-r1.ebuild, -ccpn-2.2.2_p120812.ebuild, + -ccpn-2.2.2_p120826.ebuild: + Drop old + +*ccpn-2.2.2_p120912 (12 Sep 2012) + + 12 Sep 2012; Justin Lecher +ccpn-2.2.2_p120912.ebuild: + Todays python patches + +*ccpn-2.2.2_p120829 (29 Aug 2012) + + 29 Aug 2012; Justin Lecher +ccpn-2.2.2_p120829.ebuild: + Todays python fixes + +*ccpn-2.2.2_p120826 (26 Aug 2012) + + 26 Aug 2012; Justin Lecher +ccpn-2.2.2_p120826.ebuild: + Todays python Patches + +*ccpn-2.2.2_p120812 (12 Aug 2012) + + 12 Aug 2012; Justin Lecher +ccpn-2.2.2_p120812.ebuild: + Todays python patches + +*ccpn-2.2.2_p120809-r1 (09 Aug 2012) + + 09 Aug 2012; Justin Lecher -ccpn-2.2.2_p120809.ebuild, + +ccpn-2.2.2_p120809-r1.ebuild: + Update the patches + +*ccpn-2.2.2_p120809 (09 Aug 2012) + + 09 Aug 2012; Justin Lecher +ccpn-2.2.2_p120809.ebuild: + Todays python fixes + +*ccpn-2.2.2_p120731 (31 Jul 2012) + + 31 Jul 2012; Justin Lecher +ccpn-2.2.2_p120731.ebuild: + Latest python patches + +*ccpn-2.2.2_p120709 (09 Jul 2012) + + 09 Jul 2012; Justin Lecher +ccpn-2.2.2_p120709.ebuild: + Add Todays python patches + + 06 Jun 2012; Justin Lecher ccpn-2.1.3.1_p100806.ebuild: + Fix tarball download location, #419849 + +*ccpn-2.2.2_p120511 (11 May 2012) + + 11 May 2012; Justin Lecher +ccpn-2.2.2_p120511.ebuild: + Bump to latest python fixes + + 23 Apr 2012; Justin Lecher Manifest: + Digest fix + +*ccpn-2.2.2_p120423 (23 Apr 2012) + + 23 Apr 2012; Justin Lecher +ccpn-2.2.2_p120423.ebuild: + Todays Python Patches + +*ccpn-2.2.2_p120403 (03 Apr 2012) + + 03 Apr 2012; Justin Lecher -files/2.1.5-parallel.patch, + -ccpn-2.1.5_p111213.ebuild, -ccpn-2.1.5_p111220.ebuild, + -ccpn-2.1.5_p111221.ebuild, -ccpn-2.1.5_p120109.ebuild, + -ccpn-2.1.5_p120304.ebuild, -ccpn-2.2.1_p111213.ebuild, + -ccpn-2.2.1_p111220.ebuild, -ccpn-2.2.1_p111221.ebuild, + +ccpn-2.2.2_p120403.ebuild: + Cleaned old, add latest python patches + +*ccpn-2.2.2 (03 Apr 2012) + + 03 Apr 2012; Justin Lecher +files/2.2.2-parallel.patch, + +ccpn-2.2.2.ebuild: + Version Bump + +*ccpn-2.2.1_p120304 (04 Mar 2012) +*ccpn-2.1.5_p120304 (04 Mar 2012) + + 04 Mar 2012; Justin Lecher ccpn-2.1.3.1_p100806.ebuild, + ccpn-2.1.5_p120109.ebuild, +ccpn-2.1.5_p120304.ebuild, + ccpn-2.2.1_p120109.ebuild, +ccpn-2.2.1_p120304.ebuild: + Today's python patches + +*ccpn-2.2.1_p120109 (09 Jan 2012) +*ccpn-2.1.5_p120109 (09 Jan 2012) + + 09 Jan 2012; Justin Lecher +ccpn-2.1.5_p120109.ebuild, + +ccpn-2.2.1_p120109.ebuild: + Todays Python Patches + +*ccpn-2.2.1_p111221 (21 Dec 2011) +*ccpn-2.1.5_p111221 (21 Dec 2011) + + 21 Dec 2011; Justin Lecher +ccpn-2.1.5_p111221.ebuild, + +ccpn-2.2.1_p111221.ebuild: + Todays Python Patches + +*ccpn-2.2.1_p111220 (20 Dec 2011) +*ccpn-2.1.5_p111220 (20 Dec 2011) + + 20 Dec 2011; Justin Lecher -ccpn-2.1.5_p110602.ebuild, + -ccpn-2.1.5_p110629.ebuild, -ccpn-2.1.5_p110817.ebuild, + -ccpn-2.1.5_p110905.ebuild, -ccpn-2.1.5_p110926.ebuild, + -ccpn-2.1.5_p111011.ebuild, -ccpn-2.1.5_p111017.ebuild, + -ccpn-2.1.5_p111028.ebuild, -ccpn-2.1.5_p111124.ebuild, + +ccpn-2.1.5_p111220.ebuild, -ccpn-2.2.1_p110602.ebuild, + -ccpn-2.2.1_p110629.ebuild, -ccpn-2.2.1_p110817.ebuild, + -ccpn-2.2.1_p110905.ebuild, -ccpn-2.2.1_p110926.ebuild, + -ccpn-2.2.1_p111011.ebuild, -ccpn-2.2.1_p111017.ebuild, + -ccpn-2.2.1_p111019.ebuild, -ccpn-2.2.1_p111028.ebuild, + -ccpn-2.2.1_p111124.ebuild, +ccpn-2.2.1_p111220.ebuild: + Todays Python Patches, cleaned old + +*ccpn-2.2.1_p111213 (13 Dec 2011) +*ccpn-2.1.5_p111213 (13 Dec 2011) + + 13 Dec 2011; Justin Lecher +ccpn-2.1.5_p111213.ebuild, + +ccpn-2.2.1_p111213.ebuild: + Todays Python patches + +*ccpn-2.2.1_p111124 (24 Nov 2011) +*ccpn-2.1.5_p111124 (24 Nov 2011) + + 24 Nov 2011; Justin Lecher +ccpn-2.1.5_p111124.ebuild, + +ccpn-2.2.1_p111124.ebuild: + Todays Python patches + +*ccpn-2.2.1_p111028 (28 Oct 2011) +*ccpn-2.1.5_p111028 (28 Oct 2011) + + 28 Oct 2011; Justin Lecher +ccpn-2.1.5_p111028.ebuild, + +ccpn-2.2.1_p111028.ebuild: + Todays Python patches + +*ccpn-2.2.1_p111019 (19 Oct 2011) + + 19 Oct 2011; Justin Lecher +ccpn-2.2.1_p111019.ebuild, + ccpn-2.1.5_p110926.ebuild, ccpn-2.2.1_p111017.ebuild, + ccpn-2.2.1_p110926.ebuild, ccpn-2.1.5_p111017.ebuild, metadata.xml, + ccpn-2.2.1_p111011.ebuild, ccpn-2.1.5_p111011.ebuild: + Todays Python patches, fix for psipred32 + +*ccpn-2.2.1_p111017 (17 Oct 2011) +*ccpn-2.1.5_p111017 (17 Oct 2011) + + 17 Oct 2011; Justin Lecher +ccpn-2.2.1_p111017.ebuild, + +ccpn-2.1.5_p111017.ebuild, metadata.xml: + Todays Python patches + +*ccpn-2.2.1_p111011 (11 Oct 2011) +*ccpn-2.1.5_p111011 (11 Oct 2011) + + 11 Oct 2011; Justin Lecher -ccpn-2.1.5_p110928.ebuild, + +ccpn-2.1.5_p111011.ebuild, -ccpn-2.2.1_p110928.ebuild, + +ccpn-2.2.1_p111011.ebuild: + Added fix for python import + + 07 Oct 2011; Justin Lecher ccpn-2.1.5_p110602.ebuild, + ccpn-2.1.5_p110629.ebuild, ccpn-2.1.5_p110817.ebuild, + ccpn-2.1.5_p110905.ebuild, ccpn-2.1.5_p110926.ebuild, + ccpn-2.1.5_p110928.ebuild, ccpn-2.2.1_p110602.ebuild, + ccpn-2.2.1_p110629.ebuild, ccpn-2.2.1_p110817.ebuild, + ccpn-2.2.1_p110905.ebuild, ccpn-2.2.1_p110926.ebuild, + ccpn-2.2.1_p110928.ebuild: + Corrected version to aria patches for newer ccpn data model, kindly provided + by Tim Stevens + + 28 Sep 2011; Justin Lecher +ccpn-2.1.5_p110928.ebuild, + +ccpn-2.2.1_p110928.ebuild: + Move symlink createtion to the data package + +*ccpn-2.2.1_p110928 (28 Sep 2011) +*ccpn-2.1.5_p110928 (28 Sep 2011) + + 28 Sep 2011; Justin Lecher +ccpn-2.1.5_p110928.ebuild, + +ccpn-2.2.1_p110928.ebuild: + Move symlink create to the data package + +*ccpn-2.2.1_p110926 (27 Sep 2011) +*ccpn-2.1.5_p110926 (27 Sep 2011) + + 27 Sep 2011; Justin Lecher +ccpn-2.1.5_p110926.ebuild, + +ccpn-2.2.1_p110926.ebuild, files/analysis, files/dangle, files/dataShifter, + files/depositionFileImporter, files/eci, files/extendNmr, + files/formatConverter, files/pipe2azara, files/xeasy2azara: + Fixes psipred detection, python file patches + +*ccpn-2.2.1_p110905 (05 Sep 2011) +*ccpn-2.1.5_p110905 (05 Sep 2011) + + 05 Sep 2011; Justin Lecher +ccpn-2.1.5_p110905.ebuild, + +ccpn-2.2.1_p110905.ebuild: + Todays Python Patches + +*ccpn-2.2.1_p110817 (17 Aug 2011) +*ccpn-2.1.5_p110817 (17 Aug 2011) + + 17 Aug 2011; Justin Lecher +ccpn-2.1.5_p110817.ebuild, + +ccpn-2.2.1_p110817.ebuild: + Latest upstream fixes + +*ccpn-2.2.1_p110629 (29 Jun 2011) +*ccpn-2.1.5_p110629 (29 Jun 2011) + + 29 Jun 2011; Justin Lecher ccpn-2.1.3.1_p100806.ebuild, + -ccpn-2.1.5_p110202.ebuild, -ccpn-2.1.5_p110217.ebuild, + -ccpn-2.1.5_p110222.ebuild, -ccpn-2.1.5_p110226.ebuild, + -ccpn-2.1.5_p110308.ebuild, -ccpn-2.1.5_p110401.ebuild, + -ccpn-2.1.5_p110505.ebuild, -ccpn-2.1.5_p110526.ebuild, + -ccpn-2.1.5_p110527.ebuild, ccpn-2.1.5_p110602.ebuild, + +ccpn-2.1.5_p110629.ebuild, -ccpn-2.2.1_p110222.ebuild, + -ccpn-2.2.1_p110226.ebuild, -ccpn-2.2.1_p110308.ebuild, + -ccpn-2.2.1_p110401.ebuild, -ccpn-2.2.1_p110505.ebuild, + -ccpn-2.2.1_p110526.ebuild, -ccpn-2.2.1_p110527.ebuild, + ccpn-2.2.1_p110602.ebuild, +ccpn-2.2.1_p110629.ebuild, metadata.xml: + Cleaned old, python patches, fixed sed strings + +*ccpn-2.2.1_p110602 (02 Jun 2011) +*ccpn-2.1.5_p110602 (02 Jun 2011) + + 02 Jun 2011; Justin Lecher +ccpn-2.1.5_p110602.ebuild, + +ccpn-2.2.1_p110602.ebuild: + Todays Python patches + +*ccpn-2.2.1_p110527 (27 May 2011) +*ccpn-2.1.5_p110527 (27 May 2011) + + 27 May 2011; Justin Lecher +ccpn-2.1.5_p110527.ebuild, + +ccpn-2.2.1_p110527.ebuild: + Todays Python patches + +*ccpn-2.2.1_p110526 (26 May 2011) +*ccpn-2.1.5_p110526 (26 May 2011) + + 26 May 2011; Justin Lecher +ccpn-2.1.5_p110526.ebuild, + +ccpn-2.2.1_p110526.ebuild: + Todays Python patches + +*ccpn-2.2.1_p110505 (05 May 2011) +*ccpn-2.1.5_p110505 (05 May 2011) + + 05 May 2011; Justin Lecher +ccpn-2.1.5_p110505.ebuild, + +ccpn-2.2.1_p110505.ebuild: + Todays python stuff + +*ccpn-2.2.1_p110401 (01 Apr 2011) +*ccpn-2.1.5_p110401 (01 Apr 2011) + + 01 Apr 2011; Justin Lecher +ccpn-2.1.5_p110401.ebuild, + +ccpn-2.2.1_p110401.ebuild: + Upstream changes to python modul added + +*ccpn-2.2.1_p110308 (08 Mar 2011) +*ccpn-2.1.5_p110308 (08 Mar 2011) + + 08 Mar 2011; Justin Lecher +ccpn-2.1.5_p110308.ebuild, + +ccpn-2.2.1_p110308.ebuild: + Today Python fixes + +*ccpn-2.2.1_p110226 (26 Feb 2011) +*ccpn-2.1.5_p110226 (26 Feb 2011) + + 26 Feb 2011; Justin Lecher +ccpn-2.1.5_p110226.ebuild, + +ccpn-2.2.1_p110226.ebuild: + Today's Python patches + +*ccpn-2.2.1_p110222 (22 Feb 2011) +*ccpn-2.1.5_p110222 (22 Feb 2011) + + 22 Feb 2011; Justin Lecher +files/2.2.1-parallel.patch, + +files/xeasy2azara, +ccpn-2.1.5_p110222.ebuild, +ccpn-2.2.1_p110222.ebuild: + Version Bump and python patches + +*ccpn-2.1.5_p110217 (17 Feb 2011) + + 17 Feb 2011; Justin Lecher -ccpn-2.1.5_p110215.ebuild, + +ccpn-2.1.5_p110217.ebuild: + Fix for python patches + + 16 Feb 2011; Justin Lecher ccpn-2.1.5_p110215.ebuild: + Fix Patch + +*ccpn-2.1.5_p110215 (15 Feb 2011) + + 15 Feb 2011; Justin Lecher +ccpn-2.1.5_p110215.ebuild: + Today Python Patches + +*ccpn-2.1.5_p110202 (02 Feb 2011) + + 02 Feb 2011; Justin Lecher -ccpn-2.1.5_p110105.ebuild, + -ccpn-2.1.5_p110113.ebuild, -ccpn-2.1.5_p110125.ebuild, + +ccpn-2.1.5_p110202.ebuild: + Pyhton Bump, Fixes for new X server and nvidia drivers + +*ccpn-2.1.5_p110125 (25 Jan 2011) + + 25 Jan 2011; Justin Lecher +ccpn-2.1.5_p110125.ebuild: + Todays Python patch + + 17 Jan 2011; Justin Lecher ccpn-2.1.5_p110105.ebuild, + ccpn-2.1.5_p110113.ebuild: + Correct compilation against python on prefix + +*ccpn-2.1.5_p110113 (13 Jan 2011) + + 13 Jan 2011; Justin Lecher +ccpn-2.1.5_p110113.ebuild: + Python patches included from today + +*ccpn-2.1.5_p110105 (05 Jan 2011) + + 05 Jan 2011; Justin Lecher -ccpn-2.1.5_p101114.ebuild, + -ccpn-2.1.5_p101201.ebuild, -ccpn-2.1.5_p110103.ebuild, + +ccpn-2.1.5_p110105.ebuild: + Went back to single python installation, cleaned old + +*ccpn-2.1.5_p110103 (04 Jan 2011) + + 04 Jan 2011; Justin Lecher +ccpn-2.1.5_p110103.ebuild: + Version Bump + +*ccpn-2.1.5_p101201 (05 Dec 2010) + + 05 Dec 2010; Justin Lecher +ccpn-2.1.5_p101201.ebuild: + Python Stuff bump + +*ccpn-2.1.5_p101114 (14 Nov 2010) + + 14 Nov 2010; Justin Lecher -ccpn-2.1.5_p101020.ebuild, + -ccpn-2.1.5_p101024.ebuild, -ccpn-2.1.5_p101104.ebuild, + -ccpn-2.1.5_p101106.ebuild, +ccpn-2.1.5_p101114.ebuild: + Version Bump, fix for circular deps + +*ccpn-2.1.5_p101106 (08 Nov 2010) + + 08 Nov 2010; Justin Lecher +ccpn-2.1.5_p101106.ebuild: + Version Bump + +*ccpn-2.1.5_p101104 (04 Nov 2010) + + 04 Nov 2010; Justin Lecher +ccpn-2.1.5_p101104.ebuild: + Version Bump + +*ccpn-2.1.5_p101024 (24 Oct 2010) + + 24 Oct 2010; Justin Lecher + -ccpn-2.1.5_p100921-r2.ebuild, -ccpn-2.1.5_p100924.ebuild, + -ccpn-2.1.5_p100927.ebuild, -ccpn-2.1.5_p101013.ebuild, + +ccpn-2.1.5_p101024.ebuild: + Version Bump, removed old + +*ccpn-2.1.5_p101020 (20 Oct 2010) + + 20 Oct 2010; Justin Lecher +ccpn-2.1.5_p101020.ebuild, + metadata.xml: + Version Bump and add support for extendNMR + +*ccpn-2.1.5_p101013 (13 Oct 2010) + + 13 Oct 2010; Justin Lecher +ccpn-2.1.5_p101013.ebuild: + Todays Python Patches + + 30 Sep 2010; Markus Meier ccpn-2.1.3.1_p100806.ebuild: + x86 stable, bug #338528 + + 27 Sep 2010; Markos Chandras + ccpn-2.1.3.1_p100806.ebuild: + Stable on amd64 wrt bug #338528 + + 30 Sep 2010; Justin Lecher ccpn-2.1.5_p100927.ebuild: + Added dev-python/pyglet as opengl dep + +*ccpn-2.1.5_p100927 (27 Sep 2010) + + 27 Sep 2010; Justin Lecher +ccpn-2.1.5_p100927.ebuild: + Version Bump + +*ccpn-2.1.5_p100924 (24 Sep 2010) + + 24 Sep 2010; Justin Lecher +ccpn-2.1.5_p100924.ebuild: + Todays Python Patches + +*ccpn-2.1.5_p100921 (21 Sep 2010) +*ccpn-2.1.3.1_p100806 (21 Sep 2010) + + 21 Sep 2010; Justin Lecher +files/2.1.5-parallel.patch, + -ccpn-2.1.2.1_p100216.ebuild, -ccpn-2.1.3.1_p100519.ebuild, + -ccpn-2.1.3.1_p100607.ebuild, -ccpn-2.1.3.1_p100628.ebuild, + -ccpn-2.1.3.1_p100713.ebuild, +ccpn-2.1.3.1_p100806.ebuild, + +ccpn-2.1.5_p100921-r2.ebuild, +files/depositionFileImporter, + +files/extendNmr: + Version Bump, splitted sci-libs/ccpn-data out, removed old + + 16 Sep 2010; Tomáš Chvátal + ccpn-2.1.2.1_p100216.ebuild, ccpn-2.1.3.1_p100519.ebuild, + ccpn-2.1.3.1_p100607.ebuild, ccpn-2.1.3.1_p100628.ebuild, + ccpn-2.1.3.1_p100713.ebuild: + virtual/glut -> media-libs/glut + +*ccpn-2.1.3.1_p100713 (13 Jul 2010) + + 13 Jul 2010; Justin Lecher + -files/2.1.2_1-parallel.patch, +ccpn-2.1.3.1_p100713.ebuild, + -files/2.1.3-dynamics.patch, -files/2.1.3-parallel.patch, + +files/2.1.3_1-impl-dec.patch: + Python patches and fix for implicit declaration (gone upstream) + +*ccpn-2.1.3.1_p100628 (28 Jun 2010) + + 28 Jun 2010; Justin Lecher +ccpn-2.1.3.1_p100628.ebuild: + Version Bump + +*ccpn-2.1.3.1_p100607 (07 Jun 2010) + + 07 Jun 2010; Justin Lecher -ccpn-2.1.3.ebuild, + -ccpn-2.1.3.1.ebuild, -ccpn-2.1.3.1_p100422.ebuild, + +ccpn-2.1.3.1_p100607.ebuild: + Python updates & cleanup of old versions + +*ccpn-2.1.3.1_p100519 (19 May 2010) + + 19 May 2010; Justin Lecher -ccpn-2.1.3.1_p100406.ebuild, + -ccpn-2.1.3.1_p100409.ebuild, -ccpn-2.1.3.1_p100415.ebuild, + +ccpn-2.1.3.1_p100519.ebuild: + Todays Python patches + +*ccpn-2.1.3.1_p100422 (22 Apr 2010) + + 22 Apr 2010; Justin Lecher -ccpn-2.1.3.1_p100308.ebuild, + -ccpn-2.1.3.1_p100311.ebuild, -ccpn-2.1.3.1_p100312.ebuild, + -ccpn-2.1.3.1_p100313.ebuild, -ccpn-2.1.3.1_p100318.ebuild, + -ccpn-2.1.3.1_p100318-r1.ebuild, -ccpn-2.1.3.1_p100326.ebuild, + -ccpn-2.1.3.1_p100327.ebuild, -ccpn-2.1.3.1_p100330.ebuild, + +ccpn-2.1.3.1_p100422.ebuild: + Todays python patches, removed old versions + +*ccpn-2.1.3.1_p100415 (15 Apr 2010) + + 15 Apr 2010; Justin Lecher +ccpn-2.1.3.1_p100415.ebuild: + Todays Python Patches + +*ccpn-2.1.3.1_p100409 (09 Apr 2010) + + 09 Apr 2010; Justin Lecher ccpn-2.1.3.1_p100406.ebuild, + +ccpn-2.1.3.1_p100409.ebuild: + Todays Python Patches + +*ccpn-2.1.3.1_p100406 (06 Apr 2010) + + 06 Apr 2010; Justin Lecher +ccpn-2.1.3.1_p100406.ebuild: + Todays Python Patches + +*ccpn-2.1.3.1_p100330 (30 Mar 2010) + + 30 Mar 2010; Justin Lecher +ccpn-2.1.3.1_p100330.ebuild: + Todays python patches + +*ccpn-2.1.3.1_p100327 (27 Mar 2010) + + 27 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100327.ebuild: + Todays Python patches + +*ccpn-2.1.3.1_p100326 (26 Mar 2010) + + 26 Mar 2010; +ccpn-2.1.3.1_p100326.ebuild: + Todays Python patches added + +*ccpn-2.1.3.1_p100318-r1 (18 Mar 2010) + + 18 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100318-r1.ebuild: + Important fix from upstream + +*ccpn-2.1.3.1_p100318 (18 Mar 2010) + + 18 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100318.ebuild: + Todays Python patches + +*ccpn-2.1.3.1_p100313 (13 Mar 2010) + + 13 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100313.ebuild: + Todays python patches + +*ccpn-2.1.3.1_p100312 (12 Mar 2010) + + 12 Mar 2010; Justin Lecher + -ccpn-2.1.3.1_p100226-r1.ebuild, -ccpn-2.1.3.1_p100227.ebuild, + -ccpn-2.1.3.1_p100303.ebuild, +ccpn-2.1.3.1_p100312.ebuild: + Python changes added, cleaned old versions + +*ccpn-2.1.3.1_p100311 (11 Mar 2010) + + 11 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100311.ebuild: + Python changes added + +*ccpn-2.1.3.1_p100308 (08 Mar 2010) + + 08 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100308.ebuild: + Todays python patches + +*ccpn-2.1.3.1_p100303 (03 Mar 2010) + + 03 Mar 2010; Justin Lecher + +ccpn-2.1.3.1_p100303.ebuild: + Added todays python patches + +*ccpn-2.1.3.1_p100227 (27 Feb 2010) + + 27 Feb 2010; Justin Lecher + -ccpn-2.1.3.1_p100225.ebuild, +ccpn-2.1.3.1_p100227.ebuild: + Todays Python updates + +*ccpn-2.1.3.1_p100226-r1 (26 Feb 2010) + + 26 Feb 2010; Justin Lecher + -ccpn-2.1.3.1_p100226.ebuild, +ccpn-2.1.3.1_p100226-r1.ebuild: + Upstream corrected typo in python code + +*ccpn-2.1.3.1_p100226 (26 Feb 2010) + + 26 Feb 2010; Justin Lecher + +ccpn-2.1.3.1_p100226.ebuild: + Today's python patches added + +*ccpn-2.1.3.1_p100225 (25 Feb 2010) + + 25 Feb 2010; Justin Lecher + +ccpn-2.1.3.1_p100225.ebuild: + Today's python patches added + +*ccpn-2.1.3.1 (18 Feb 2010) + + 18 Feb 2010; Justin Lecher + +files/2.1.3_1-dynamics.patch, -ccpn-2.1.2.1_p100204.ebuild, + +ccpn-2.1.3.1.ebuild, +files/2.1.3_1-parallel.patch, + -ccpn-2.1.2.1_p100213.ebuild: + Version bump and old ones removed + +*ccpn-2.1.3 (17 Feb 2010) + + 17 Feb 2010; Justin Lecher + +files/2.1.3-dynamics.patch, +ccpn-2.1.3.ebuild, + +files/2.1.3-parallel.patch: + Version bump, keyworded for amd64-linux and x86-linux + +*ccpn-2.1.2.1_p100216 (16 Feb 2010) + + 16 Feb 2010; Justin Lecher + +ccpn-2.1.2.1_p100216.ebuild: + Added latest python patches + + 13 Feb 2010; Justin Lecher + +files/2.1.2_1-parallel.patch, ccpn-2.1.2.1_p100204.ebuild, + ccpn-2.1.2.1_p100213.ebuild: + Fixed parallel build problems, bug 304959 + +*ccpn-2.1.2.1_p100213 (13 Feb 2010) + + 13 Feb 2010; Justin Lecher + +ccpn-2.1.2.1_p100213.ebuild: + Added todays python patches + + 06 Feb 2010; Justin Lecher + ccpn-2.1.2.1_p100204.ebuild: + RESTRICT_PYTHON_ABIS="2.4 3.*" + +*ccpn-2.1.2.1_p100204 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher +files/analysis, + +files/dangle, +files/dataShifter, +files/eci, +files/formatConverter, + +files/pipe2azara, +ccpn-2.1.2.1_p100204.ebuild, +metadata.xml: + Initial commit diff --git a/sci-chemistry/chemical-mime-data/ChangeLog b/sci-chemistry/chemical-mime-data/ChangeLog deleted file mode 100644 index 2ea0e536..00000000 --- a/sci-chemistry/chemical-mime-data/ChangeLog +++ /dev/null @@ -1,49 +0,0 @@ -# ChangeLog for sci-chemistry/chemical-mime-data -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemical-mime-data/ChangeLog,v 1.9 2014/08/10 20:28:26 slyfox Exp $ - - 10 Aug 2014; Sergei Trofimovich - chemical-mime-data-0.1.94-r1.ebuild, chemical-mime-data-0.1.94-r2.ebuild, - chemical-mime-data-0.1.94.ebuild: - QA: drop trailing '.' from DESCRIPTION - -*chemical-mime-data-0.1.94-r2 (20 Jun 2013) - - 20 Jun 2013; Justin Lecher - +chemical-mime-data-0.1.94-r2.ebuild, - +files/chemical-mime-data-0.1.94-namespace-svg.patch, - +files/chemical-mime-data-0.1.94-pigz.patch, - +files/chemical-mime-data-0.1.94-turbomole.patch, metadata.xml: - Fix for sandbox violation, #464782; Add missing deps; Bump to EAPI=5 and - autotools-utils eclass; fix compatibility to pigz[symlink]; call fdo-mime - function in pkg_postrm - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 04 May 2012; Jeff Horelick - chemical-mime-data-0.1.94.ebuild, chemical-mime-data-0.1.94-r1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*chemical-mime-data-0.1.94-r1 (16 May 2010) - - 16 May 2010; Jeff Gardner - +chemical-mime-data-0.1.94-r1.ebuild: - Fix docdir thanks to Diego in bug #299328 - - 18 Sep 2009; Petteri Räty - chemical-mime-data-0.1.94.ebuild: - Migrate to EAPI 2 in order to get rid of built_with_use. - - 15 May 2008; Markus Meier - chemical-mime-data-0.1.94.ebuild: - amd64/x86 stable, bug #221963 - - 03 Jan 2008; chemical-mime-data-0.1.94.ebuild: - Die if imagemagick isn't emerged with USE=xml. Thanks to My Th on bug #204091. - -*chemical-mime-data-0.1.94 (11 Dec 2007) - - 11 Dec 2007; Jeff Gardner +metadata.xml, - +chemical-mime-data-0.1.94.ebuild: - Initial import diff --git a/sci-chemistry/chemical-mime-data/ChangeLog-2015 b/sci-chemistry/chemical-mime-data/ChangeLog-2015 new file mode 100644 index 00000000..2ea0e536 --- /dev/null +++ b/sci-chemistry/chemical-mime-data/ChangeLog-2015 @@ -0,0 +1,49 @@ +# ChangeLog for sci-chemistry/chemical-mime-data +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemical-mime-data/ChangeLog,v 1.9 2014/08/10 20:28:26 slyfox Exp $ + + 10 Aug 2014; Sergei Trofimovich + chemical-mime-data-0.1.94-r1.ebuild, chemical-mime-data-0.1.94-r2.ebuild, + chemical-mime-data-0.1.94.ebuild: + QA: drop trailing '.' from DESCRIPTION + +*chemical-mime-data-0.1.94-r2 (20 Jun 2013) + + 20 Jun 2013; Justin Lecher + +chemical-mime-data-0.1.94-r2.ebuild, + +files/chemical-mime-data-0.1.94-namespace-svg.patch, + +files/chemical-mime-data-0.1.94-pigz.patch, + +files/chemical-mime-data-0.1.94-turbomole.patch, metadata.xml: + Fix for sandbox violation, #464782; Add missing deps; Bump to EAPI=5 and + autotools-utils eclass; fix compatibility to pigz[symlink]; call fdo-mime + function in pkg_postrm + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 04 May 2012; Jeff Horelick + chemical-mime-data-0.1.94.ebuild, chemical-mime-data-0.1.94-r1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*chemical-mime-data-0.1.94-r1 (16 May 2010) + + 16 May 2010; Jeff Gardner + +chemical-mime-data-0.1.94-r1.ebuild: + Fix docdir thanks to Diego in bug #299328 + + 18 Sep 2009; Petteri Räty + chemical-mime-data-0.1.94.ebuild: + Migrate to EAPI 2 in order to get rid of built_with_use. + + 15 May 2008; Markus Meier + chemical-mime-data-0.1.94.ebuild: + amd64/x86 stable, bug #221963 + + 03 Jan 2008; chemical-mime-data-0.1.94.ebuild: + Die if imagemagick isn't emerged with USE=xml. Thanks to My Th on bug #204091. + +*chemical-mime-data-0.1.94 (11 Dec 2007) + + 11 Dec 2007; Jeff Gardner +metadata.xml, + +chemical-mime-data-0.1.94.ebuild: + Initial import diff --git a/sci-chemistry/chemtool/ChangeLog b/sci-chemistry/chemtool/ChangeLog deleted file mode 100644 index 79a0c662..00000000 --- a/sci-chemistry/chemtool/ChangeLog +++ /dev/null @@ -1,227 +0,0 @@ -# ChangeLog for sci-chemistry/chemtool -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemtool/ChangeLog,v 1.40 2015/04/07 14:36:49 jlec Exp $ - - 27 Mar 2014; Justin Lecher -chemtool-1.6.12.ebuild, - -chemtool-1.6.12-r1.ebuild, -files/1.6.12-no-underlinking.patch, - metadata.xml: - Drop old - - 24 Mar 2014; Agostino Sarubbo chemtool-1.6.13.ebuild: - Stable for ppc, wrt bug #501046 - - 23 Mar 2014; Agostino Sarubbo chemtool-1.6.13.ebuild: - Stable for x86, wrt bug #501046 - - 13 Mar 2014; Chema Alonso chemtool-1.6.13.ebuild: - Stable for amd64 wrt bug #501046 - -*chemtool-1.6.14 (11 Feb 2014) - - 11 Feb 2014; Justin Lecher +chemtool-1.6.14.ebuild: - Version Bump, #501004 - - 14 Aug 2013; Patrick Lauer chemtool-1.6.13.ebuild: - Whitespace - - 04 May 2012; Jeff Horelick chemtool-1.6.12.ebuild, - chemtool-1.6.12-r1.ebuild, chemtool-1.6.13.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*chemtool-1.6.13 (26 Jan 2012) - - 26 Jan 2012; Justin Lecher - +files/1.6.13-no-underlinking.patch, chemtool-1.6.12.ebuild, - chemtool-1.6.12-r1.ebuild, +chemtool-1.6.13.ebuild, metadata.xml: - Version Bump, #400733; add missing deps - -*chemtool-1.6.12-r1 (23 May 2011) - - 23 May 2011; Justin Lecher - +files/1.6.12-no-underlinking.patch, chemtool-1.6.12.ebuild, - +chemtool-1.6.12-r1.ebuild, metadata.xml: - Fix underlinking, #367849 - - 02 Mar 2011; Justin Lecher chemtool-1.6.12.ebuild: - Correct Slots for gtk 3 introduction to tree - - 21 Nov 2009; Samuli Suominen - -chemtool-1.6.9-r1.ebuild, -chemtool-1.6.10.ebuild, - -chemtool-1.6.11.ebuild, -files/chemtool-1.6.11-makefile.patch: - Remove kde-base/kdelibs:3.5 reverse deps. - - 21 Nov 2009; nixnut chemtool-1.6.12.ebuild: - ppc stable #292831 - - 14 Nov 2009; Markus Meier chemtool-1.6.12.ebuild: - amd64/x86 stable, bug #292831 - - 11 Nov 2009; Samuli Suominen - chemtool-1.6.12.ebuild: - Remove kde-base/kdelibs:3.5 support. - -*chemtool-1.6.12 (20 Jun 2009) - - 20 Jun 2009; Jeff Gardner +chemtool-1.6.12.ebuild: - Latest version, thanks to lumbrius in bug #274199 and Reinis Danne for the - science overlay ebuild. - -*chemtool-1.6.11 (26 Apr 2008) - - 26 Apr 2008; Markus Dittrich - chemtool-1.6.9-r1.ebuild, chemtool-1.6.10.ebuild, - +files/chemtool-1.6.11-makefile.patch, +chemtool-1.6.11.ebuild: - Version bump and explicitly depend on kdelibs-3.5* (fixes bug #219221). - - 22 Apr 2008; Jeff Gardner chemtool-1.6.9-r1.ebuild: - Fix typo - - 21 Apr 2008; Jeff Gardner chemtool-1.6.9-r1.ebuild, - chemtool-1.6.10.ebuild: - Fix RDEPEND for bug #217278 - - 12 Jan 2008; Jeff Gardner -chemtool-1.6.7-r1.ebuild, - chemtool-1.6.9-r1.ebuild, chemtool-1.6.10.ebuild: - adding pkgconfig dependency wrt bug #152428 - - 19 Apr 2007; Christian Faulhammer - chemtool-1.6.9-r1.ebuild: - stable amd64, bug 174973 - - 18 Apr 2007; Christian Faulhammer - chemtool-1.6.9-r1.ebuild: - stable x86, bug 174973 - - 18 Apr 2007; nixnut chemtool-1.6.9-r1.ebuild: - Stable on ppc wrt bug 174973 - -*chemtool-1.6.10 (17 Apr 2007) - - 17 Apr 2007; Jeff Gardner +chemtool-1.6.10.ebuild: - Version bump. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 06 Jan 2007; Danny van Dyk -chemtool-1.6.9.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*chemtool-1.6.9-r1 (17 Apr 2006) - - 17 Apr 2006; Markus Dittrich - +chemtool-1.6.9-r1.ebuild: - Removed unnecessary parts which installed files into /. - This fixes bug #130238. - - 08 Apr 2006; Markus Dittrich - +chemtool-1.6.9.ebuild: - Version bump. Thanks to boozo for his ebuild. - This fixes bug #128651. - - 02 Apr 2006; Olivier Fisette -chemtool-1.6.3.ebuild, - -chemtool-1.6.4.ebuild, -chemtool-1.6.6.ebuild, -chemtool-1.6.7.ebuild: - Removed old versions with gtk2 USE flag (see bug #106560). - - 17 Mar 2006; Chris White chemtool-1.6.7-r1.ebuild: - x86 stable for 1.6.7-r1 per bug #126252. - -*chemtool-1.6.7-r1 (20 Sep 2005) - - 20 Sep 2005; Patrick Kursawe - +chemtool-1.6.7-r1.ebuild: - Getting rid of gtk1 support (bug #106560) - - 16 Sep 2005; Patrick Kursawe chemtool-1.6.6.ebuild, - chemtool-1.6.7.ebuild: - No longer relying on KDEDIR variable because of bug #105955 and getting rid of that - ugly bogus_kde hack I did before. - -*chemtool-1.6.7 (08 Aug 2005) - - 08 Aug 2005; Patrick Kursawe chemtool-1.6.6.ebuild, - +chemtool-1.6.7.ebuild: - Version bump - - 29 May 2005; Tobias Scherbaum - chemtool-1.6.6.ebuild: - Added to ~ppc, thanks to Sam Kyritsoglou in #94359. - -*chemtool-1.6.6 (22 Feb 2005) - - 22 Feb 2005; Patrick Kursawe +chemtool-1.6.6.ebuild: - Version bump - -*chemtool-1.6.4 (04 Feb 2005) - - 04 Feb 2005; Patrick Kursawe +chemtool-1.6.4.ebuild: - Version bump. Adding optional gtk2 support. - -*chemtool-1.6.3 (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +chemtool-1.6.3.ebuild: - Moved from app-sci/chemtool to sci-chemistry/chemtool. - - 08 Nov 2004; Patrick Kursawe - -files/chemtool-1.6.patch, -chemtool-1.6-r1.ebuild, chemtool-1.6.3.ebuild: - Cleanup + fixing bug #70454 - - 18 Aug 2004; Patrick Kursawe chemtool-1.6.3.ebuild: - stable for x86 - - 02 Jun 2004; Aron Griffis chemtool-1.6-r1.ebuild, - chemtool-1.6.3.ebuild: - Fix use invocation - -*chemtool-1.6.3 (24 May 2004) - - 24 May 2004; Patrick Kursawe chemtool-1.6.3.ebuild: - Version bump, is supposed to work on amd64 aswell (see bug #51468) - - 15 Apr 2004; Caleb Tennis - -files/Makefile.in-chemtool-1.5-gentoo.diff, - -files/config.h.in-chemtool-1.5-gentoo.diff, - -files/configure.in-chemtool-1.5-gentoo.diff, - -files/src-cht-Makefile.in-chemtool-1.5-gentoo.diff, -chemtool-1.6.ebuild: - Remove old ebuild that was dependent on kde 2.2 anyway. - - 15 Mar 2004; Patrick Kursawe chemtool-1.6-r1.ebuild: - Removing historical supersed dependency and need-kde 2 - -*chemtool-1.6-r1 (26 Feb 2004) - - 26 Feb 2004; Patrick Kursawe chemtool-1.6-r1.ebuild: - Removed gettext dependency, won't install locale stuff when USE="-nls" - (see bug #37230) - - 02 Dec 2003; Patrick Kursawe chemtool-1.6.ebuild: - Fixing dependencies. - - 30 Sep 2003; Patrick Kursawe chemtool-1.6.ebuild: - Considered stable for x86. - - 06 Aug 2003; Patrick Kursawe chemtool-1.6.ebuild: - Trying to fix bug 24984, no revision bump necessary. - -*chemtool-1.6 (17 Jul 2003) - - 17 Jul 2003; Patrick Kursawe chemtool-1.6.ebuild, - files/chemtool-1.6.patch: - Version bump as requested in bug 24367 - -*chemtool-1.5 (27 Nov 2002) - - 18 Apr 2003; Seemant Kulleen Manifest, - chemtool-1.5.ebuild: - sandbox violation fix. reported by: wernfried haas in - bug #19562 - - 27 Nov 2002; George Shapovalov chemtool-1.5.ebuild, files/{Makefile.in-chemtool-1.5-gentoo.diff,digest-chemtool-1.5,config.h.in-chemtool-1.5-gentoo.diff,src-cht-Makefile.in-chemtool-1.5-gentoo.diff,configure.in-chemtool-1.5-gentoo.diff} : - - initial release. - - Chemtool is a program for drawing organic molecules - ebuild submitted by diff --git a/sci-chemistry/chemtool/ChangeLog-2015 b/sci-chemistry/chemtool/ChangeLog-2015 new file mode 100644 index 00000000..79a0c662 --- /dev/null +++ b/sci-chemistry/chemtool/ChangeLog-2015 @@ -0,0 +1,227 @@ +# ChangeLog for sci-chemistry/chemtool +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/chemtool/ChangeLog,v 1.40 2015/04/07 14:36:49 jlec Exp $ + + 27 Mar 2014; Justin Lecher -chemtool-1.6.12.ebuild, + -chemtool-1.6.12-r1.ebuild, -files/1.6.12-no-underlinking.patch, + metadata.xml: + Drop old + + 24 Mar 2014; Agostino Sarubbo chemtool-1.6.13.ebuild: + Stable for ppc, wrt bug #501046 + + 23 Mar 2014; Agostino Sarubbo chemtool-1.6.13.ebuild: + Stable for x86, wrt bug #501046 + + 13 Mar 2014; Chema Alonso chemtool-1.6.13.ebuild: + Stable for amd64 wrt bug #501046 + +*chemtool-1.6.14 (11 Feb 2014) + + 11 Feb 2014; Justin Lecher +chemtool-1.6.14.ebuild: + Version Bump, #501004 + + 14 Aug 2013; Patrick Lauer chemtool-1.6.13.ebuild: + Whitespace + + 04 May 2012; Jeff Horelick chemtool-1.6.12.ebuild, + chemtool-1.6.12-r1.ebuild, chemtool-1.6.13.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*chemtool-1.6.13 (26 Jan 2012) + + 26 Jan 2012; Justin Lecher + +files/1.6.13-no-underlinking.patch, chemtool-1.6.12.ebuild, + chemtool-1.6.12-r1.ebuild, +chemtool-1.6.13.ebuild, metadata.xml: + Version Bump, #400733; add missing deps + +*chemtool-1.6.12-r1 (23 May 2011) + + 23 May 2011; Justin Lecher + +files/1.6.12-no-underlinking.patch, chemtool-1.6.12.ebuild, + +chemtool-1.6.12-r1.ebuild, metadata.xml: + Fix underlinking, #367849 + + 02 Mar 2011; Justin Lecher chemtool-1.6.12.ebuild: + Correct Slots for gtk 3 introduction to tree + + 21 Nov 2009; Samuli Suominen + -chemtool-1.6.9-r1.ebuild, -chemtool-1.6.10.ebuild, + -chemtool-1.6.11.ebuild, -files/chemtool-1.6.11-makefile.patch: + Remove kde-base/kdelibs:3.5 reverse deps. + + 21 Nov 2009; nixnut chemtool-1.6.12.ebuild: + ppc stable #292831 + + 14 Nov 2009; Markus Meier chemtool-1.6.12.ebuild: + amd64/x86 stable, bug #292831 + + 11 Nov 2009; Samuli Suominen + chemtool-1.6.12.ebuild: + Remove kde-base/kdelibs:3.5 support. + +*chemtool-1.6.12 (20 Jun 2009) + + 20 Jun 2009; Jeff Gardner +chemtool-1.6.12.ebuild: + Latest version, thanks to lumbrius in bug #274199 and Reinis Danne for the + science overlay ebuild. + +*chemtool-1.6.11 (26 Apr 2008) + + 26 Apr 2008; Markus Dittrich + chemtool-1.6.9-r1.ebuild, chemtool-1.6.10.ebuild, + +files/chemtool-1.6.11-makefile.patch, +chemtool-1.6.11.ebuild: + Version bump and explicitly depend on kdelibs-3.5* (fixes bug #219221). + + 22 Apr 2008; Jeff Gardner chemtool-1.6.9-r1.ebuild: + Fix typo + + 21 Apr 2008; Jeff Gardner chemtool-1.6.9-r1.ebuild, + chemtool-1.6.10.ebuild: + Fix RDEPEND for bug #217278 + + 12 Jan 2008; Jeff Gardner -chemtool-1.6.7-r1.ebuild, + chemtool-1.6.9-r1.ebuild, chemtool-1.6.10.ebuild: + adding pkgconfig dependency wrt bug #152428 + + 19 Apr 2007; Christian Faulhammer + chemtool-1.6.9-r1.ebuild: + stable amd64, bug 174973 + + 18 Apr 2007; Christian Faulhammer + chemtool-1.6.9-r1.ebuild: + stable x86, bug 174973 + + 18 Apr 2007; nixnut chemtool-1.6.9-r1.ebuild: + Stable on ppc wrt bug 174973 + +*chemtool-1.6.10 (17 Apr 2007) + + 17 Apr 2007; Jeff Gardner +chemtool-1.6.10.ebuild: + Version bump. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 06 Jan 2007; Danny van Dyk -chemtool-1.6.9.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*chemtool-1.6.9-r1 (17 Apr 2006) + + 17 Apr 2006; Markus Dittrich + +chemtool-1.6.9-r1.ebuild: + Removed unnecessary parts which installed files into /. + This fixes bug #130238. + + 08 Apr 2006; Markus Dittrich + +chemtool-1.6.9.ebuild: + Version bump. Thanks to boozo for his ebuild. + This fixes bug #128651. + + 02 Apr 2006; Olivier Fisette -chemtool-1.6.3.ebuild, + -chemtool-1.6.4.ebuild, -chemtool-1.6.6.ebuild, -chemtool-1.6.7.ebuild: + Removed old versions with gtk2 USE flag (see bug #106560). + + 17 Mar 2006; Chris White chemtool-1.6.7-r1.ebuild: + x86 stable for 1.6.7-r1 per bug #126252. + +*chemtool-1.6.7-r1 (20 Sep 2005) + + 20 Sep 2005; Patrick Kursawe + +chemtool-1.6.7-r1.ebuild: + Getting rid of gtk1 support (bug #106560) + + 16 Sep 2005; Patrick Kursawe chemtool-1.6.6.ebuild, + chemtool-1.6.7.ebuild: + No longer relying on KDEDIR variable because of bug #105955 and getting rid of that + ugly bogus_kde hack I did before. + +*chemtool-1.6.7 (08 Aug 2005) + + 08 Aug 2005; Patrick Kursawe chemtool-1.6.6.ebuild, + +chemtool-1.6.7.ebuild: + Version bump + + 29 May 2005; Tobias Scherbaum + chemtool-1.6.6.ebuild: + Added to ~ppc, thanks to Sam Kyritsoglou in #94359. + +*chemtool-1.6.6 (22 Feb 2005) + + 22 Feb 2005; Patrick Kursawe +chemtool-1.6.6.ebuild: + Version bump + +*chemtool-1.6.4 (04 Feb 2005) + + 04 Feb 2005; Patrick Kursawe +chemtool-1.6.4.ebuild: + Version bump. Adding optional gtk2 support. + +*chemtool-1.6.3 (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +chemtool-1.6.3.ebuild: + Moved from app-sci/chemtool to sci-chemistry/chemtool. + + 08 Nov 2004; Patrick Kursawe + -files/chemtool-1.6.patch, -chemtool-1.6-r1.ebuild, chemtool-1.6.3.ebuild: + Cleanup + fixing bug #70454 + + 18 Aug 2004; Patrick Kursawe chemtool-1.6.3.ebuild: + stable for x86 + + 02 Jun 2004; Aron Griffis chemtool-1.6-r1.ebuild, + chemtool-1.6.3.ebuild: + Fix use invocation + +*chemtool-1.6.3 (24 May 2004) + + 24 May 2004; Patrick Kursawe chemtool-1.6.3.ebuild: + Version bump, is supposed to work on amd64 aswell (see bug #51468) + + 15 Apr 2004; Caleb Tennis + -files/Makefile.in-chemtool-1.5-gentoo.diff, + -files/config.h.in-chemtool-1.5-gentoo.diff, + -files/configure.in-chemtool-1.5-gentoo.diff, + -files/src-cht-Makefile.in-chemtool-1.5-gentoo.diff, -chemtool-1.6.ebuild: + Remove old ebuild that was dependent on kde 2.2 anyway. + + 15 Mar 2004; Patrick Kursawe chemtool-1.6-r1.ebuild: + Removing historical supersed dependency and need-kde 2 + +*chemtool-1.6-r1 (26 Feb 2004) + + 26 Feb 2004; Patrick Kursawe chemtool-1.6-r1.ebuild: + Removed gettext dependency, won't install locale stuff when USE="-nls" + (see bug #37230) + + 02 Dec 2003; Patrick Kursawe chemtool-1.6.ebuild: + Fixing dependencies. + + 30 Sep 2003; Patrick Kursawe chemtool-1.6.ebuild: + Considered stable for x86. + + 06 Aug 2003; Patrick Kursawe chemtool-1.6.ebuild: + Trying to fix bug 24984, no revision bump necessary. + +*chemtool-1.6 (17 Jul 2003) + + 17 Jul 2003; Patrick Kursawe chemtool-1.6.ebuild, + files/chemtool-1.6.patch: + Version bump as requested in bug 24367 + +*chemtool-1.5 (27 Nov 2002) + + 18 Apr 2003; Seemant Kulleen Manifest, + chemtool-1.5.ebuild: + sandbox violation fix. reported by: wernfried haas in + bug #19562 + + 27 Nov 2002; George Shapovalov chemtool-1.5.ebuild, files/{Makefile.in-chemtool-1.5-gentoo.diff,digest-chemtool-1.5,config.h.in-chemtool-1.5-gentoo.diff,src-cht-Makefile.in-chemtool-1.5-gentoo.diff,configure.in-chemtool-1.5-gentoo.diff} : + + initial release. + + Chemtool is a program for drawing organic molecules + ebuild submitted by diff --git a/sci-chemistry/clashlist/ChangeLog b/sci-chemistry/clashlist/ChangeLog deleted file mode 100644 index 4805d04e..00000000 --- a/sci-chemistry/clashlist/ChangeLog +++ /dev/null @@ -1,25 +0,0 @@ -# ChangeLog for sci-chemistry/clashlist -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/ChangeLog,v 1.5 2015/04/26 16:19:03 pacho Exp $ - - 26 Apr 2015; Pacho Ramos clashlist-3.17-r1.ebuild: - x86 stable wrt bug #547384 - - 13 Jun 2012; Jeff Horelick clashlist-3.17.ebuild: - marked x86 per bug 419867 - - 11 Jun 2012; Agostino Sarubbo clashlist-3.17.ebuild: - Stable for amd64, wrt bug #419867 - -*clashlist-3.17-r1 (07 Jun 2012) - - 07 Jun 2012; Justin Lecher clashlist-3.17.ebuild, - +clashlist-3.17-r1.ebuild, metadata.xml: - Rename cluster to molprobity-cluster, #419999 - -*clashlist-3.17 (19 Jul 2010) - - 19 Jul 2010; Justin Lecher +clashlist-3.17.ebuild, - +metadata.xml: - New addition - diff --git a/sci-chemistry/clashlist/ChangeLog-2015 b/sci-chemistry/clashlist/ChangeLog-2015 new file mode 100644 index 00000000..4805d04e --- /dev/null +++ b/sci-chemistry/clashlist/ChangeLog-2015 @@ -0,0 +1,25 @@ +# ChangeLog for sci-chemistry/clashlist +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/clashlist/ChangeLog,v 1.5 2015/04/26 16:19:03 pacho Exp $ + + 26 Apr 2015; Pacho Ramos clashlist-3.17-r1.ebuild: + x86 stable wrt bug #547384 + + 13 Jun 2012; Jeff Horelick clashlist-3.17.ebuild: + marked x86 per bug 419867 + + 11 Jun 2012; Agostino Sarubbo clashlist-3.17.ebuild: + Stable for amd64, wrt bug #419867 + +*clashlist-3.17-r1 (07 Jun 2012) + + 07 Jun 2012; Justin Lecher clashlist-3.17.ebuild, + +clashlist-3.17-r1.ebuild, metadata.xml: + Rename cluster to molprobity-cluster, #419999 + +*clashlist-3.17 (19 Jul 2010) + + 19 Jul 2010; Justin Lecher +clashlist-3.17.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/cluster/ChangeLog b/sci-chemistry/cluster/ChangeLog deleted file mode 100644 index d886d404..00000000 --- a/sci-chemistry/cluster/ChangeLog +++ /dev/null @@ -1,46 +0,0 @@ -# ChangeLog for sci-chemistry/cluster -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cluster/ChangeLog,v 1.11 2015/05/21 18:55:42 jlec Exp $ - -*cluster-1.3.081231 (21 May 2015) - - 21 May 2015; Justin Lecher +cluster-1.3.081231.ebuild: - Reinstate old version due to broken revdeps - - 21 May 2015; Justin Lecher -cluster-1.3.081231.ebuild: - Drop old - - 21 May 2015; Agostino Sarubbo cluster-1.3.081231-r1.ebuild: - Stable for amd64, wrt bug #547382 - - 26 Apr 2015; Pacho Ramos cluster-1.3.081231-r1.ebuild: - x86 stable wrt bug #547382 - - 22 Apr 2015; Justin Lecher cluster-1.3.081231-r1.ebuild, - metadata.xml: - Bump EAPI - - 13 Jun 2012; Jeff Horelick cluster-1.3.081231.ebuild: - marked x86 per bug 419861 - - 11 Jun 2012; Agostino Sarubbo cluster-1.3.081231.ebuild: - Stable for amd64, wrt bug #419861 - -*cluster-1.3.081231-r1 (07 Jun 2012) - - 07 Jun 2012; Justin Lecher +cluster-1.3.081231-r1.ebuild: - Rename cluster to molprobity-cluster, #419999 - - 06 Jun 2012; Justin Lecher cluster-1.3.081231.ebuild: - minor cleaning - - 23 May 2012; Justin Lecher files/1.3.081231-ldflags.patch, - cluster-1.3.081231.ebuild, metadata.xml: - Move to EAPI=4, respect CFLAGS - -*cluster-1.3.081231 (18 Jul 2010) - - 18 Jul 2010; Justin Lecher - +files/1.3.081231-includes.patch, +files/1.3.081231-ldflags.patch, - +cluster-1.3.081231.ebuild, +metadata.xml: - New Addition diff --git a/sci-chemistry/cluster/ChangeLog-2015 b/sci-chemistry/cluster/ChangeLog-2015 new file mode 100644 index 00000000..d886d404 --- /dev/null +++ b/sci-chemistry/cluster/ChangeLog-2015 @@ -0,0 +1,46 @@ +# ChangeLog for sci-chemistry/cluster +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cluster/ChangeLog,v 1.11 2015/05/21 18:55:42 jlec Exp $ + +*cluster-1.3.081231 (21 May 2015) + + 21 May 2015; Justin Lecher +cluster-1.3.081231.ebuild: + Reinstate old version due to broken revdeps + + 21 May 2015; Justin Lecher -cluster-1.3.081231.ebuild: + Drop old + + 21 May 2015; Agostino Sarubbo cluster-1.3.081231-r1.ebuild: + Stable for amd64, wrt bug #547382 + + 26 Apr 2015; Pacho Ramos cluster-1.3.081231-r1.ebuild: + x86 stable wrt bug #547382 + + 22 Apr 2015; Justin Lecher cluster-1.3.081231-r1.ebuild, + metadata.xml: + Bump EAPI + + 13 Jun 2012; Jeff Horelick cluster-1.3.081231.ebuild: + marked x86 per bug 419861 + + 11 Jun 2012; Agostino Sarubbo cluster-1.3.081231.ebuild: + Stable for amd64, wrt bug #419861 + +*cluster-1.3.081231-r1 (07 Jun 2012) + + 07 Jun 2012; Justin Lecher +cluster-1.3.081231-r1.ebuild: + Rename cluster to molprobity-cluster, #419999 + + 06 Jun 2012; Justin Lecher cluster-1.3.081231.ebuild: + minor cleaning + + 23 May 2012; Justin Lecher files/1.3.081231-ldflags.patch, + cluster-1.3.081231.ebuild, metadata.xml: + Move to EAPI=4, respect CFLAGS + +*cluster-1.3.081231 (18 Jul 2010) + + 18 Jul 2010; Justin Lecher + +files/1.3.081231-includes.patch, +files/1.3.081231-ldflags.patch, + +cluster-1.3.081231.ebuild, +metadata.xml: + New Addition diff --git a/sci-chemistry/cns/ChangeLog b/sci-chemistry/cns/ChangeLog deleted file mode 100644 index bb3b5496..00000000 --- a/sci-chemistry/cns/ChangeLog +++ /dev/null @@ -1,270 +0,0 @@ -# ChangeLog for sci-chemistry/cns -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.56 2014/06/09 07:32:35 jlec Exp $ - - 09 Jun 2014; Justin Lecher cns-1.2.1-r8.ebuild: - Readd Stable keyowrds, #512792 - - 08 Jun 2014; Justin Lecher -cns-1.2.1-r7.ebuild, - -cns-1.3_p7.ebuild, metadata.xml: - Stabilize; drop pre EAPI=5 ebuilds, #478584; add longdescription, #511734 - -*cns-1.3_p7-r1 (09 Oct 2013) -*cns-1.2.1-r8 (09 Oct 2013) - - 09 Oct 2013; Justin Lecher +cns-1.2.1-r8.ebuild, - +cns-1.3_p7-r1.ebuild, metadata.xml: - Bump EAPI - - 27 Nov 2012; Justin Lecher cns-1.2.1-r7.ebuild, - cns-1.3_p7.ebuild: - Drop default value of FCFLAGS as it is in the profile these days - - 19 Oct 2012; Justin Lecher cns-1.2.1-r7.ebuild, - cns-1.3_p7.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 10 Jul 2012; Justin Lecher -cns-1.1.ebuild, - -cns-1.2.1-r6.ebuild, -files/1.2.1-aria.patch, - -files/1.1-time-length-10.patch, - -files/1.2-allow-unknown-architectures.patch: - Drop old - - 10 Jul 2012; Jeff Horelick cns-1.2.1-r7.ebuild: - marked x86 per bug 419859 - -*cns-1.3_p7 (04 Jul 2012) - - 04 Jul 2012; Justin Lecher +files/1.3_p7-delete.patch, - +files/1.3_p7-gentoo.patch, -files/1.3_p5-delete.patch, - -files/1.3_p5-gentoo.patch, -files/cns_solve_env_sh-1.3_p5, - -cns-1.3_p5.ebuild, +files/cns_solve_env_sh-1.3_p7, +cns-1.3_p7.ebuild: - Version Bump, #424655 - - 12 Jun 2012; Agostino Sarubbo cns-1.2.1-r7.ebuild: - Stable for amd64, wrt bug #419859 - - 06 Jun 2012; Justin Lecher cns-1.2.1-r7.ebuild: - Restrict test suite as it need manual inspection of the results - - 21 Mar 2012; Justin Lecher cns-1.2.1-r7.ebuild: - Change FFLAGS against FCFLAGS - - 06 Feb 2012; Justin Lecher -cns-1.2.1.ebuild, - -cns-1.2.1-r5.ebuild: - Drop old - - 04 Feb 2012; Thomas Kahle cns-1.2.1-r6.ebuild: - marked x86 per bug 391555 - - 26 Nov 2011; Markos Chandras cns-1.2.1-r6.ebuild: - Stable on amd64 wrt bug #391555 - -*cns-1.2.1-r7 (30 Aug 2011) - - 30 Aug 2011; Justin Lecher +cns-1.2.1-r7.ebuild, - metadata.xml: - Bump patches to aria-2.3.2 - - 21 Jun 2011; Justin Lecher cns-1.1.ebuild, - cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild, - cns-1.3_p5.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher cns-1.1.ebuild, - cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild, - cns-1.3_p5.ebuild: - Added fortran-2.eclass support - - 28 May 2011; Justin Lecher cns-1.2.1-r5.ebuild, - cns-1.2.1-r6.ebuild, cns-1.3_p5.ebuild: - Ebuild contains leading spaces on line: fixed - - 28 May 2011; Justin Lecher cns-1.2.1-r5.ebuild, - cns-1.2.1-r6.ebuild, cns-1.3_p5.ebuild: - Steal bitness check from dev-libs/nss - - 28 May 2011; Justin Lecher cns-1.2.1-r6.ebuild: - Removed bad alias definition - - 11 May 2011; Justin Lecher cns-1.2.1.ebuild, - cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild: - Remove unnessesary definition of g77on() - -*cns-1.2.1-r6 (05 Apr 2011) - - 05 Apr 2011; Justin Lecher +cns-1.2.1-r6.ebuild: - Vaxlib is deprecated - -*cns-1.3_p5 (13 Feb 2011) - - 13 Feb 2011; Justin Lecher +files/1.3_p5-delete.patch, - +files/1.3_p5-gentoo.patch, -files/1.3_p3-delete.patch, - -files/1.3_p3-gentoo.patch, -files/cns_solve_env_sh-1.3_p3, - -cns-1.3_p3.ebuild, +files/cns_solve_env_sh-1.3_p5, +cns-1.3_p5.ebuild: - Version Bump - - 17 Dec 2010; Justin Lecher files/1.2.1-gentoo.patch, - cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild, - files/1.3_p3-gentoo.patch: - Correct handling of OpenMp support - - 17 Dec 2010; Justin Lecher cns-1.1.ebuild, - cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild: - Fix for fortran.eclass removal - - 16 Dec 2010; Justin Lecher cns-1.1.ebuild, - cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild: - Removal of fortran.eclass, #348851 - -*cns-1.3_p3 (25 Nov 2010) - - 25 Nov 2010; Justin Lecher +files/1.3_p3-delete.patch, - +files/1.3_p3-gentoo.patch, -files/1.3-delete.patch, -files/1.3-gentoo.patch, - -files/cns_solve_env_sh-1.3, -cns-1.3.ebuild, +files/cns_solve_env_sh-1.3_p3, - +cns-1.3_p3.ebuild: - Version Bump, thanks alexxy telling me this; fix for correct linking - - 19 Nov 2010; Justin Lecher -cns-1.2.ebuild, - -cns-1.2-r1.ebuild, -cns-1.2.1-r1.ebuild, -cns-1.2.1-r3.ebuild, - -cns-1.2.1-r4.ebuild: - Dropp old - - 18 Nov 2010; Justin Lecher -cns-1.2.1-r2.ebuild, - cns-1.2.1-r3.ebuild, cns-1.2.1-r4.ebuild, cns-1.2.1-r5.ebuild, - cns-1.3.ebuild: - Removed PDEPEND on aria - - 17 Nov 2010; Justin Lecher cns-1.2.1.ebuild, - cns-1.2.1-r1.ebuild, cns-1.2.1-r2.ebuild, cns-1.2.1-r3.ebuild, - cns-1.2.1-r4.ebuild, cns-1.2.1-r5.ebuild, cns-1.3.ebuild: - Moved to usage of tc-has-openmp - -*cns-1.3 (17 Nov 2010) - - 17 Nov 2010; Justin Lecher +files/1.3-delete.patch, - +files/1.3-gentoo.patch, +files/cns_solve_env_sh-1.3, +cns-1.3.ebuild: - Version Bump - -*cns-1.2.1-r5 (16 Nov 2010) - - 16 Nov 2010; Kacper Kowalik +cns-1.2.1-r5.ebuild: - Link proper openmp lib when using intel compiler - - 28 Jun 2010; Justin Lecher cns-1.2.1.ebuild, - cns-1.2.1-r1.ebuild, cns-1.2.1-r2.ebuild, cns-1.2.1-r3.ebuild, - cns-1.2.1-r4.ebuild: - Removed blocking of dos2unix - -*cns-1.2.1-r4 (05 Apr 2010) - - 05 Apr 2010; Justin Lecher +files/1.2.1-ifort.patch, - +cns-1.2.1-r4.ebuild: - Ifort support - - 04 Apr 2010; Justin Lecher Manifest: - distfile digest fix - - 20 Mar 2010; Justin Lecher (jlec) - +files/1.2.1-aria2.3.patch, +cns-1.2.1-r3.ebuild, - +files/1.2.1-parallel.patch: - Included new version of aria - -*cns-1.2.1-r3 (20 Mar 2010) - - 20 Mar 2010; Justin Lecher (jlec) - +files/1.2.1-aria2.3.patch, +cns-1.2.1-r3.ebuild: - Bump to new aria-2.3 - - 07 Mar 2010; Justin Lecher (jlec) cns-1.2.1-r2.ebuild: - Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me - -*cns-1.2.1-r2 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/1.2.1-aria.patch, +cns-1.2.1-r2.ebuild: - Added aria support per 220905 - Some QA fixes to make repoman happy - - 06 Feb 2010; Justin Lecher (jlec) cns-1.2.1-r1.ebuild: - We have to repect selection of USE="-openmp", fixed path in setup file. - - 27 Jul 2009; Donnie Berkholz ; - files/cns_solve_env_sh: - Update cns_solve_env_sh to version in science overlay, which removes some - unneeded lines. - -*cns-1.2.1-r1 (27 Jul 2009) - - 27 Jul 2009; Donnie Berkholz ; - +files/1.2.1-gentoo.patch, +cns-1.2.1-r1.ebuild: - Pull in Justin Lecher's fixes from the science overlay, except for ARIA. - - 07 Jul 2009; Diego E. Pettenò cns-1.2.1.ebuild: - Use elog for fetch error. - - 29 May 2009; Donnie Berkholz ; cns-1.2.1.ebuild: - Stable on amd64. - - 17 Oct 2008; Markus Meier metadata.xml: - openmp USE-flag is global now - - 20 Aug 2008; Donnie Berkholz ; cns-1.2.1.ebuild: - Only append -fopenmp to FFLAGS, not all compiler flags. - -*cns-1.2.1 (03 Aug 2008) - - 03 Aug 2008; Donnie Berkholz ; - +files/1.2.1-allow-gcc-openmp.patch, +files/cns_solve_env_sh, - metadata.xml, +cns-1.2.1.ebuild: - Bump. Keyword ~amd64; add OpenMP support for parallel refinement; - (#209805) Fix a number of environment variables and cns_ functions to work - properly. - - 03 Jun 2008; Michael Sterrett cns-1.1.ebuild, - cns-1.2.ebuild, cns-1.2-r1.ebuild: - remove reference to app-shells/csh which has been removed - - 10 Jan 2008; Donnie Berkholz ; - +files/1.2-allow-unknown-architectures.patch, cns-1.2-r1.ebuild: - Add a patch to make CNS compile on unknown architecture/OS combinations, of - which ppc is one. - -*cns-1.2-r1 (07 Dec 2007) - - 07 Dec 2007; Donnie Berkholz ; +cns-1.2-r1.ebuild: - Fix non-g77 build; make cns_web work; install the environment script to - /etc/profile.d/ so people don't need to manually source it; also install the - (hidden) bash/sh-compatible script; don't pass LDFLAGS because gfortran - doesn't deal with them properly. - -*cns-1.2 (22 Jun 2007) - - 22 Jun 2007; Donnie Berkholz ; cns-1.1.ebuild, - +cns-1.2.ebuild: - (#162740) Bump. - - 15 Mar 2007; Danny van Dyk cns-1.1.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; cns-1.1.ebuild: - x86/ppc stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*cns-1.1 (10 Jun 2006) - - 10 Jun 2006; Donnie Berkholz ; - +files/1.1-time-length-10.patch, +metadata.xml, +cns-1.1.ebuild: - Add CNS, an important package in X-ray crystallography and nuclear magnetic - resonance (NMR). - diff --git a/sci-chemistry/cns/ChangeLog-2015 b/sci-chemistry/cns/ChangeLog-2015 new file mode 100644 index 00000000..bb3b5496 --- /dev/null +++ b/sci-chemistry/cns/ChangeLog-2015 @@ -0,0 +1,270 @@ +# ChangeLog for sci-chemistry/cns +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cns/ChangeLog,v 1.56 2014/06/09 07:32:35 jlec Exp $ + + 09 Jun 2014; Justin Lecher cns-1.2.1-r8.ebuild: + Readd Stable keyowrds, #512792 + + 08 Jun 2014; Justin Lecher -cns-1.2.1-r7.ebuild, + -cns-1.3_p7.ebuild, metadata.xml: + Stabilize; drop pre EAPI=5 ebuilds, #478584; add longdescription, #511734 + +*cns-1.3_p7-r1 (09 Oct 2013) +*cns-1.2.1-r8 (09 Oct 2013) + + 09 Oct 2013; Justin Lecher +cns-1.2.1-r8.ebuild, + +cns-1.3_p7-r1.ebuild, metadata.xml: + Bump EAPI + + 27 Nov 2012; Justin Lecher cns-1.2.1-r7.ebuild, + cns-1.3_p7.ebuild: + Drop default value of FCFLAGS as it is in the profile these days + + 19 Oct 2012; Justin Lecher cns-1.2.1-r7.ebuild, + cns-1.3_p7.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 10 Jul 2012; Justin Lecher -cns-1.1.ebuild, + -cns-1.2.1-r6.ebuild, -files/1.2.1-aria.patch, + -files/1.1-time-length-10.patch, + -files/1.2-allow-unknown-architectures.patch: + Drop old + + 10 Jul 2012; Jeff Horelick cns-1.2.1-r7.ebuild: + marked x86 per bug 419859 + +*cns-1.3_p7 (04 Jul 2012) + + 04 Jul 2012; Justin Lecher +files/1.3_p7-delete.patch, + +files/1.3_p7-gentoo.patch, -files/1.3_p5-delete.patch, + -files/1.3_p5-gentoo.patch, -files/cns_solve_env_sh-1.3_p5, + -cns-1.3_p5.ebuild, +files/cns_solve_env_sh-1.3_p7, +cns-1.3_p7.ebuild: + Version Bump, #424655 + + 12 Jun 2012; Agostino Sarubbo cns-1.2.1-r7.ebuild: + Stable for amd64, wrt bug #419859 + + 06 Jun 2012; Justin Lecher cns-1.2.1-r7.ebuild: + Restrict test suite as it need manual inspection of the results + + 21 Mar 2012; Justin Lecher cns-1.2.1-r7.ebuild: + Change FFLAGS against FCFLAGS + + 06 Feb 2012; Justin Lecher -cns-1.2.1.ebuild, + -cns-1.2.1-r5.ebuild: + Drop old + + 04 Feb 2012; Thomas Kahle cns-1.2.1-r6.ebuild: + marked x86 per bug 391555 + + 26 Nov 2011; Markos Chandras cns-1.2.1-r6.ebuild: + Stable on amd64 wrt bug #391555 + +*cns-1.2.1-r7 (30 Aug 2011) + + 30 Aug 2011; Justin Lecher +cns-1.2.1-r7.ebuild, + metadata.xml: + Bump patches to aria-2.3.2 + + 21 Jun 2011; Justin Lecher cns-1.1.ebuild, + cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild, + cns-1.3_p5.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher cns-1.1.ebuild, + cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild, + cns-1.3_p5.ebuild: + Added fortran-2.eclass support + + 28 May 2011; Justin Lecher cns-1.2.1-r5.ebuild, + cns-1.2.1-r6.ebuild, cns-1.3_p5.ebuild: + Ebuild contains leading spaces on line: fixed + + 28 May 2011; Justin Lecher cns-1.2.1-r5.ebuild, + cns-1.2.1-r6.ebuild, cns-1.3_p5.ebuild: + Steal bitness check from dev-libs/nss + + 28 May 2011; Justin Lecher cns-1.2.1-r6.ebuild: + Removed bad alias definition + + 11 May 2011; Justin Lecher cns-1.2.1.ebuild, + cns-1.2.1-r5.ebuild, cns-1.2.1-r6.ebuild: + Remove unnessesary definition of g77on() + +*cns-1.2.1-r6 (05 Apr 2011) + + 05 Apr 2011; Justin Lecher +cns-1.2.1-r6.ebuild: + Vaxlib is deprecated + +*cns-1.3_p5 (13 Feb 2011) + + 13 Feb 2011; Justin Lecher +files/1.3_p5-delete.patch, + +files/1.3_p5-gentoo.patch, -files/1.3_p3-delete.patch, + -files/1.3_p3-gentoo.patch, -files/cns_solve_env_sh-1.3_p3, + -cns-1.3_p3.ebuild, +files/cns_solve_env_sh-1.3_p5, +cns-1.3_p5.ebuild: + Version Bump + + 17 Dec 2010; Justin Lecher files/1.2.1-gentoo.patch, + cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild, + files/1.3_p3-gentoo.patch: + Correct handling of OpenMp support + + 17 Dec 2010; Justin Lecher cns-1.1.ebuild, + cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild: + Fix for fortran.eclass removal + + 16 Dec 2010; Justin Lecher cns-1.1.ebuild, + cns-1.2.1.ebuild, cns-1.2.1-r5.ebuild, cns-1.3_p3.ebuild: + Removal of fortran.eclass, #348851 + +*cns-1.3_p3 (25 Nov 2010) + + 25 Nov 2010; Justin Lecher +files/1.3_p3-delete.patch, + +files/1.3_p3-gentoo.patch, -files/1.3-delete.patch, -files/1.3-gentoo.patch, + -files/cns_solve_env_sh-1.3, -cns-1.3.ebuild, +files/cns_solve_env_sh-1.3_p3, + +cns-1.3_p3.ebuild: + Version Bump, thanks alexxy telling me this; fix for correct linking + + 19 Nov 2010; Justin Lecher -cns-1.2.ebuild, + -cns-1.2-r1.ebuild, -cns-1.2.1-r1.ebuild, -cns-1.2.1-r3.ebuild, + -cns-1.2.1-r4.ebuild: + Dropp old + + 18 Nov 2010; Justin Lecher -cns-1.2.1-r2.ebuild, + cns-1.2.1-r3.ebuild, cns-1.2.1-r4.ebuild, cns-1.2.1-r5.ebuild, + cns-1.3.ebuild: + Removed PDEPEND on aria + + 17 Nov 2010; Justin Lecher cns-1.2.1.ebuild, + cns-1.2.1-r1.ebuild, cns-1.2.1-r2.ebuild, cns-1.2.1-r3.ebuild, + cns-1.2.1-r4.ebuild, cns-1.2.1-r5.ebuild, cns-1.3.ebuild: + Moved to usage of tc-has-openmp + +*cns-1.3 (17 Nov 2010) + + 17 Nov 2010; Justin Lecher +files/1.3-delete.patch, + +files/1.3-gentoo.patch, +files/cns_solve_env_sh-1.3, +cns-1.3.ebuild: + Version Bump + +*cns-1.2.1-r5 (16 Nov 2010) + + 16 Nov 2010; Kacper Kowalik +cns-1.2.1-r5.ebuild: + Link proper openmp lib when using intel compiler + + 28 Jun 2010; Justin Lecher cns-1.2.1.ebuild, + cns-1.2.1-r1.ebuild, cns-1.2.1-r2.ebuild, cns-1.2.1-r3.ebuild, + cns-1.2.1-r4.ebuild: + Removed blocking of dos2unix + +*cns-1.2.1-r4 (05 Apr 2010) + + 05 Apr 2010; Justin Lecher +files/1.2.1-ifort.patch, + +cns-1.2.1-r4.ebuild: + Ifort support + + 04 Apr 2010; Justin Lecher Manifest: + distfile digest fix + + 20 Mar 2010; Justin Lecher (jlec) + +files/1.2.1-aria2.3.patch, +cns-1.2.1-r3.ebuild, + +files/1.2.1-parallel.patch: + Included new version of aria + +*cns-1.2.1-r3 (20 Mar 2010) + + 20 Mar 2010; Justin Lecher (jlec) + +files/1.2.1-aria2.3.patch, +cns-1.2.1-r3.ebuild: + Bump to new aria-2.3 + + 07 Mar 2010; Justin Lecher (jlec) cns-1.2.1-r2.ebuild: + Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me + +*cns-1.2.1-r2 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/1.2.1-aria.patch, +cns-1.2.1-r2.ebuild: + Added aria support per 220905 + Some QA fixes to make repoman happy + + 06 Feb 2010; Justin Lecher (jlec) cns-1.2.1-r1.ebuild: + We have to repect selection of USE="-openmp", fixed path in setup file. + + 27 Jul 2009; Donnie Berkholz ; + files/cns_solve_env_sh: + Update cns_solve_env_sh to version in science overlay, which removes some + unneeded lines. + +*cns-1.2.1-r1 (27 Jul 2009) + + 27 Jul 2009; Donnie Berkholz ; + +files/1.2.1-gentoo.patch, +cns-1.2.1-r1.ebuild: + Pull in Justin Lecher's fixes from the science overlay, except for ARIA. + + 07 Jul 2009; Diego E. Pettenò cns-1.2.1.ebuild: + Use elog for fetch error. + + 29 May 2009; Donnie Berkholz ; cns-1.2.1.ebuild: + Stable on amd64. + + 17 Oct 2008; Markus Meier metadata.xml: + openmp USE-flag is global now + + 20 Aug 2008; Donnie Berkholz ; cns-1.2.1.ebuild: + Only append -fopenmp to FFLAGS, not all compiler flags. + +*cns-1.2.1 (03 Aug 2008) + + 03 Aug 2008; Donnie Berkholz ; + +files/1.2.1-allow-gcc-openmp.patch, +files/cns_solve_env_sh, + metadata.xml, +cns-1.2.1.ebuild: + Bump. Keyword ~amd64; add OpenMP support for parallel refinement; + (#209805) Fix a number of environment variables and cns_ functions to work + properly. + + 03 Jun 2008; Michael Sterrett cns-1.1.ebuild, + cns-1.2.ebuild, cns-1.2-r1.ebuild: + remove reference to app-shells/csh which has been removed + + 10 Jan 2008; Donnie Berkholz ; + +files/1.2-allow-unknown-architectures.patch, cns-1.2-r1.ebuild: + Add a patch to make CNS compile on unknown architecture/OS combinations, of + which ppc is one. + +*cns-1.2-r1 (07 Dec 2007) + + 07 Dec 2007; Donnie Berkholz ; +cns-1.2-r1.ebuild: + Fix non-g77 build; make cns_web work; install the environment script to + /etc/profile.d/ so people don't need to manually source it; also install the + (hidden) bash/sh-compatible script; don't pass LDFLAGS because gfortran + doesn't deal with them properly. + +*cns-1.2 (22 Jun 2007) + + 22 Jun 2007; Donnie Berkholz ; cns-1.1.ebuild, + +cns-1.2.ebuild: + (#162740) Bump. + + 15 Mar 2007; Danny van Dyk cns-1.1.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; cns-1.1.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*cns-1.1 (10 Jun 2006) + + 10 Jun 2006; Donnie Berkholz ; + +files/1.1-time-length-10.patch, +metadata.xml, +cns-1.1.ebuild: + Add CNS, an important package in X-ray crystallography and nuclear magnetic + resonance (NMR). + diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog deleted file mode 100644 index 0665d3f8..00000000 --- a/sci-chemistry/coot/ChangeLog +++ /dev/null @@ -1,291 +0,0 @@ -# ChangeLog for sci-chemistry/coot -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.68 2015/08/06 09:59:02 ago Exp $ - - 06 Aug 2015; Agostino Sarubbo coot-0.7.2.ebuild: - Stable for amd64, wrt bug #529518 - - 08 Apr 2015; Michał Górny coot-0.7.1-r1.ebuild: - Drop old Python implementations - - 12 Oct 2014; Justin Lecher coot-0.7.ebuild, - coot-0.7.1-r1.ebuild, coot-0.7.2.ebuild: - Fix Slot of mmdb dep - - 17 Sep 2014; Justin Lecher coot-0.7.2.ebuild: - Drop py2.6 support; fix shebang fixing problems - -*coot-0.7.2 (19 Sep 2013) - - 19 Sep 2013; Justin Lecher +coot-0.7.2.ebuild: - Version Bump - - 18 Sep 2013; Justin Lecher coot-0.7.ebuild, - coot-0.7.1-r1.ebuild: - Drop unneccessary shebang magic, #484972 - - 18 Sep 2013; Justin Lecher -coot-0.6.2.ebuild, - -coot-0.6.2-r1.ebuild: - Drop old - - 15 Sep 2013; Agostino Sarubbo coot-0.7.ebuild: - Stable for x86, wrt bug #477166 - - 15 Sep 2013; Agostino Sarubbo coot-0.7.ebuild: - Stable for amd64, wrt bug #477166 - -*coot-0.7.1-r1 (28 Aug 2013) - - 28 Aug 2013; Justin Lecher -coot-0.7.1.ebuild, - +coot-0.7.1-r1.ebuild: - Install missing syminfo, #482734 - - 27 Aug 2013; Justin Lecher coot-0.7.1.ebuild: - Reenable test - -*coot-0.7.1 (26 Aug 2013) - - 26 Aug 2013; Justin Lecher coot-0.6.2.ebuild, - coot-0.6.2-r1.ebuild, coot-0.7.ebuild, +coot-0.7.1.ebuild: - Version Bump, #482278; bump to new python-r1 eclasses - - 29 May 2013; Justin Lecher coot-0.6.2.ebuild, - coot-0.6.2-r1.ebuild, coot-0.7.ebuild, metadata.xml: - Drop version restriction from clipper dep - -*coot-0.7 (06 Oct 2012) - - 06 Oct 2012; Justin Lecher -coot-0.7_pre4040.ebuild, - -coot-0.7_pre4266.ebuild, +coot-0.7.ebuild, - +files/coot-0.7-clipper-config.patch, +files/coot-0.7-goocanvas.patch, - +files/coot-0.7-mmdb-config.patch, +files/coot-0.7-ssm.patch, - -files/coot-0.7_pre4040-clipper-config.patch, - -files/coot-0.7_pre4040-gl.patch, -files/coot-0.7_pre4040-goocanvas.patch, - -files/coot-0.7_pre4040-libpng-1.5.patch, - -files/coot-0.7_pre4040-mmdb-config.patch, -files/coot-0.7_pre4040-ssm.patch, - -files/coot-0.7_pre4040-test.patch, - -files/coot-0.7_pre4266-clipper-config.patch, - -files/coot-0.7_pre4266-goocanvas.patch, - -files/coot-0.7_pre4266-mmdb-config.patch, -files/coot-0.7_pre4266-ssm.patch: - Version Bump, #437304; drop prereleases - -*coot-0.7_pre4266 (11 Jul 2012) - - 11 Jul 2012; Justin Lecher +coot-0.7_pre4266.ebuild, - +files/coot-0.7_pre4266-clipper-config.patch, - +files/coot-0.7_pre4266-goocanvas.patch, - +files/coot-0.7_pre4266-mmdb-config.patch, +files/coot-0.7_pre4266-ssm.patch: - Version Bump, fixes compilation with gcc-4.7, #425836 - - 07 Mar 2012; Justin Lecher coot-0.6.2.ebuild, - coot-0.6.2-r1.ebuild, coot-0.7_pre4040.ebuild: - Fix sandbox violation, #407311 - -*coot-0.7_pre4040 (06 Mar 2012) - - 06 Mar 2012; Justin Lecher coot-0.6.2-r1.ebuild, - +coot-0.7_pre4040.ebuild, +files/coot-0.7_pre4040-clipper-config.patch, - +files/coot-0.7_pre4040-gl.patch, +files/coot-0.7_pre4040-goocanvas.patch, - +files/coot-0.7_pre4040-libpng-1.5.patch, - +files/coot-0.7_pre4040-mmdb-config.patch, +files/coot-0.7_pre4040-ssm.patch, - +files/coot-0.7_pre4040-test.patch: - Adding pre release version from svn - - 23 Oct 2011; Samuli Suominen - -files/0.6.1-libpng14.patch, -coot-0.6.1.ebuild: - old - - 08 Oct 2011; Pawel Hajdan jr coot-0.6.2.ebuild: - x86 stable wrt bug #385759 - - 08 Oct 2011; Samuli Suominen coot-0.6.2.ebuild: - amd64 stable wrt #385759 - - 07 Oct 2011; Justin Lecher coot-0.6.2-r1.ebuild: - Readded dropped flag-o-matic.eclass, found by ssuominen - -*coot-0.6.2-r1 (07 Oct 2011) - - 07 Oct 2011; Justin Lecher +coot-0.6.2-r1.ebuild: - Moved to autotools-utils.eclass in order to have correct .a/la file handling, - #385865 - - 06 Oct 2011; Samuli Suominen coot-0.6.2.ebuild: - Pass -Wl,--no-as-needed with USE="openmp" and - +files/0.6.2-libpng15.patch, coot-0.6.2.ebuild: - Fix building with libpng15 wrt #378349 by Diego Elio Pettenò - - 16 Jul 2011; Justin Lecher +files/0.6.2-ssm.patch, - coot-0.6.2.ebuild: - Depend on unbundled ssm - - 29 Jun 2011; Justin Lecher coot-0.6.2.ebuild: - Fix mmdb dep version - - 29 Jun 2011; Justin Lecher +files/0.6.2-test.patch, - coot-0.6.2.ebuild: - Fixed deps and test - - 28 Jun 2011; Justin Lecher -files/0.3.1-as-needed.patch, - -files/0.4_pre2-as-needed.patch, - -files/0.3.1-fix-compilation-with-guile-1.8.patch, - -files/0.3.1-link-against-guile-gtk-properly.patch, - -files/0.3.3-as-needed.patch, - -files/0.3.3-link-against-guile-gtk-properly.patch, - -files/0.4_pre2-link-against-guile-gtk-properly.patch, - -files/0.4_pre2-r549-fix-namespace-error.patch, -files/glib.m4, - -files/gtk.m4: - Cleaned unneeded patches - -*coot-0.6.2 (28 Jun 2011) - - 28 Jun 2011; Justin Lecher - +files/0.6.2-clipper-config.patch, +files/0.6.2-gl.patch, - +files/0.6.2-mmdb-config.patch, coot-0.6.1.ebuild, +coot-0.6.2.ebuild, - metadata.xml: - Version Bump - - 02 Mar 2011; Justin Lecher coot-0.6.1.ebuild: - Correct Slots for gtk 3 introduction to tree - - 02 Mar 2011; Justin Lecher coot-0.6.1.ebuild: - Correct Slots for gtk 3 introduction to tree - - 31 Jan 2011; Justin Lecher -coot-0.6.ebuild: - Cleaned old - - 25 Jan 2011; Christian Faulhammer coot-0.6.1.ebuild: - stable x86, bug 352043 - - 20 Jan 2011; Markos Chandras coot-0.6.1.ebuild: - Stable on amd64 wrt bug #352043 - - 18 Jan 2011; Justin Lecher coot-0.6.1.ebuild: - Fix for tests, #333845 - - 12 Jan 2011; Justin Lecher coot-0.6.1.ebuild: - Added missing DEPEND on bc - - 24 Sep 2010; Justin Lecher coot-0.6.ebuild, - coot-0.6.1.ebuild: - Fixed guile-gtk version DEP - - 24 Sep 2010; Justin Lecher coot-0.6.1.ebuild: - Keyworded for ~-linux - - 16 Sep 2010; Tomáš Chvátal coot-0.6.ebuild, - coot-0.6.1.ebuild: - virtual/glut -> media-libs/glut - - 17 May 2010; Justin Lecher coot-0.6.ebuild, - coot-0.6.1.ebuild: - Fix for test, #318605; added missing deps on libidn & libpng - -*coot-0.6.1 (17 May 2010) - - 17 May 2010; Justin Lecher +files/0.6.1-libpng14.patch, - +coot-0.6.1.ebuild: - Version Bump - - 22 Apr 2010; Justin Lecher coot-0.6.ebuild: - Fixes for Python ABIs - - 26 Feb 2010; Justin Lecher coot-0.6.ebuild: - Missing sci-libs/mmdb DEP added - -*coot-0.6 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher -coot-0.1.2.ebuild, - -coot-0.3.1.ebuild, -coot-0.3.3.ebuild, -coot-0.4_pre2-r549.ebuild, - +coot-0.6.ebuild, +files/glib.m4, +files/gtk.m4: - Version Bump, removed broken versions - - 10 Oct 2009; Patrick Lauer coot-0.1.2.ebuild, - coot-0.3.1.ebuild, coot-0.3.3.ebuild, coot-0.4_pre2-r549.ebuild: - Fixing Homepage, half of #285068 - - 17 Apr 2009; Sébastien Fabbro coot-0.4_pre2-r549: - Fixed license, thanks jlec - - 11 Feb 2009; Donnie Berkholz ; coot-0.1.2.ebuild, - coot-0.3.1.ebuild, coot-0.3.3.ebuild: - (#258543) Remove duplicate python deps (walch.martin at web.de). - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - -*coot-0.4_pre2-r549 (19 Dec 2007) - - 19 Dec 2007; Donnie Berkholz ; - +files/0.4_pre2-as-needed.patch, - +files/0.4_pre2-link-against-guile-gtk-properly.patch, - +files/0.4_pre2-r549-fix-namespace-error.patch, - +coot-0.4_pre2-r549.ebuild: - Bump to 0.4 prerelease, unkeyworded. Use a package.keywords entry with '**' - for the keyword to install. - -*coot-0.3.3 (16 Aug 2007) - - 16 Aug 2007; Donnie Berkholz ; - +files/0.3.3-as-needed.patch, - +files/0.3.3-link-against-guile-gtk-properly.patch, +coot-0.3.3.ebuild: - Bump. Reads CNS maps, handles anisotropy better, other bugfixes and features. - - 22 Jun 2007; Donnie Berkholz ; - +files/0.3.1-link-against-guile-gtk-properly.patch, - +files/0.3.1-fix-compilation-with-guile-1.8.patch, coot-0.3.1.ebuild: - Add USE=new-interface to prefer gtk2, which is still experimental. Add - patches to make it work with guile 1.8 and link against guile-gtk properly. - Change src_install() make to emake -j1 so other MAKEOPTS get through. - - 30 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: - Keyword ~ppc. - - 29 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: - Require >=x11-libs/gtk-canvas-0.1.1-r2 for --as-needed linker flag. - -*coot-0.3.1 (29 May 2007) - - 29 May 2007; Donnie Berkholz ; - +files/0.3.1-as-needed.patch, +coot-0.3.1.ebuild: - Bump to latest version. Now uses external, slotted sci-libs/clipper instead - of the one in ccp4, because it needs newer versions than those contained in - ccp4. - - 15 Mar 2007; Danny van Dyk coot-0.1.2.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 06 Jan 2007; Danny van Dyk -coot-0.1.2_pre1.ebuild: - QA: Removed unused versions. - - 26 Sep 2006; Donnie Berkholz ; coot-0.1.2.ebuild: - Stable on x86/ppc. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*coot-0.1.2 (06 Sep 2006) - - 06 Sep 2006; Donnie Berkholz ; +coot-0.1.2.ebuild: - Bump. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 28 Jun 2006; Donnie Berkholz ; - coot-0.1.2_pre1.ebuild: - Add missing dep on x11-libs/gtkglext. - -*coot-0.1.2_pre1 (16 Jun 2006) - - 16 Jun 2006; Donnie Berkholz ; +metadata.xml, - +coot-0.1.2_pre1.ebuild: - Add the Crystallographic Object-Oriented Toolkit for model building, - completion and validation. diff --git a/sci-chemistry/coot/ChangeLog-2015 b/sci-chemistry/coot/ChangeLog-2015 new file mode 100644 index 00000000..0665d3f8 --- /dev/null +++ b/sci-chemistry/coot/ChangeLog-2015 @@ -0,0 +1,291 @@ +# ChangeLog for sci-chemistry/coot +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.68 2015/08/06 09:59:02 ago Exp $ + + 06 Aug 2015; Agostino Sarubbo coot-0.7.2.ebuild: + Stable for amd64, wrt bug #529518 + + 08 Apr 2015; Michał Górny coot-0.7.1-r1.ebuild: + Drop old Python implementations + + 12 Oct 2014; Justin Lecher coot-0.7.ebuild, + coot-0.7.1-r1.ebuild, coot-0.7.2.ebuild: + Fix Slot of mmdb dep + + 17 Sep 2014; Justin Lecher coot-0.7.2.ebuild: + Drop py2.6 support; fix shebang fixing problems + +*coot-0.7.2 (19 Sep 2013) + + 19 Sep 2013; Justin Lecher +coot-0.7.2.ebuild: + Version Bump + + 18 Sep 2013; Justin Lecher coot-0.7.ebuild, + coot-0.7.1-r1.ebuild: + Drop unneccessary shebang magic, #484972 + + 18 Sep 2013; Justin Lecher -coot-0.6.2.ebuild, + -coot-0.6.2-r1.ebuild: + Drop old + + 15 Sep 2013; Agostino Sarubbo coot-0.7.ebuild: + Stable for x86, wrt bug #477166 + + 15 Sep 2013; Agostino Sarubbo coot-0.7.ebuild: + Stable for amd64, wrt bug #477166 + +*coot-0.7.1-r1 (28 Aug 2013) + + 28 Aug 2013; Justin Lecher -coot-0.7.1.ebuild, + +coot-0.7.1-r1.ebuild: + Install missing syminfo, #482734 + + 27 Aug 2013; Justin Lecher coot-0.7.1.ebuild: + Reenable test + +*coot-0.7.1 (26 Aug 2013) + + 26 Aug 2013; Justin Lecher coot-0.6.2.ebuild, + coot-0.6.2-r1.ebuild, coot-0.7.ebuild, +coot-0.7.1.ebuild: + Version Bump, #482278; bump to new python-r1 eclasses + + 29 May 2013; Justin Lecher coot-0.6.2.ebuild, + coot-0.6.2-r1.ebuild, coot-0.7.ebuild, metadata.xml: + Drop version restriction from clipper dep + +*coot-0.7 (06 Oct 2012) + + 06 Oct 2012; Justin Lecher -coot-0.7_pre4040.ebuild, + -coot-0.7_pre4266.ebuild, +coot-0.7.ebuild, + +files/coot-0.7-clipper-config.patch, +files/coot-0.7-goocanvas.patch, + +files/coot-0.7-mmdb-config.patch, +files/coot-0.7-ssm.patch, + -files/coot-0.7_pre4040-clipper-config.patch, + -files/coot-0.7_pre4040-gl.patch, -files/coot-0.7_pre4040-goocanvas.patch, + -files/coot-0.7_pre4040-libpng-1.5.patch, + -files/coot-0.7_pre4040-mmdb-config.patch, -files/coot-0.7_pre4040-ssm.patch, + -files/coot-0.7_pre4040-test.patch, + -files/coot-0.7_pre4266-clipper-config.patch, + -files/coot-0.7_pre4266-goocanvas.patch, + -files/coot-0.7_pre4266-mmdb-config.patch, -files/coot-0.7_pre4266-ssm.patch: + Version Bump, #437304; drop prereleases + +*coot-0.7_pre4266 (11 Jul 2012) + + 11 Jul 2012; Justin Lecher +coot-0.7_pre4266.ebuild, + +files/coot-0.7_pre4266-clipper-config.patch, + +files/coot-0.7_pre4266-goocanvas.patch, + +files/coot-0.7_pre4266-mmdb-config.patch, +files/coot-0.7_pre4266-ssm.patch: + Version Bump, fixes compilation with gcc-4.7, #425836 + + 07 Mar 2012; Justin Lecher coot-0.6.2.ebuild, + coot-0.6.2-r1.ebuild, coot-0.7_pre4040.ebuild: + Fix sandbox violation, #407311 + +*coot-0.7_pre4040 (06 Mar 2012) + + 06 Mar 2012; Justin Lecher coot-0.6.2-r1.ebuild, + +coot-0.7_pre4040.ebuild, +files/coot-0.7_pre4040-clipper-config.patch, + +files/coot-0.7_pre4040-gl.patch, +files/coot-0.7_pre4040-goocanvas.patch, + +files/coot-0.7_pre4040-libpng-1.5.patch, + +files/coot-0.7_pre4040-mmdb-config.patch, +files/coot-0.7_pre4040-ssm.patch, + +files/coot-0.7_pre4040-test.patch: + Adding pre release version from svn + + 23 Oct 2011; Samuli Suominen + -files/0.6.1-libpng14.patch, -coot-0.6.1.ebuild: + old + + 08 Oct 2011; Pawel Hajdan jr coot-0.6.2.ebuild: + x86 stable wrt bug #385759 + + 08 Oct 2011; Samuli Suominen coot-0.6.2.ebuild: + amd64 stable wrt #385759 + + 07 Oct 2011; Justin Lecher coot-0.6.2-r1.ebuild: + Readded dropped flag-o-matic.eclass, found by ssuominen + +*coot-0.6.2-r1 (07 Oct 2011) + + 07 Oct 2011; Justin Lecher +coot-0.6.2-r1.ebuild: + Moved to autotools-utils.eclass in order to have correct .a/la file handling, + #385865 + + 06 Oct 2011; Samuli Suominen coot-0.6.2.ebuild: + Pass -Wl,--no-as-needed with USE="openmp" and + +files/0.6.2-libpng15.patch, coot-0.6.2.ebuild: + Fix building with libpng15 wrt #378349 by Diego Elio Pettenò + + 16 Jul 2011; Justin Lecher +files/0.6.2-ssm.patch, + coot-0.6.2.ebuild: + Depend on unbundled ssm + + 29 Jun 2011; Justin Lecher coot-0.6.2.ebuild: + Fix mmdb dep version + + 29 Jun 2011; Justin Lecher +files/0.6.2-test.patch, + coot-0.6.2.ebuild: + Fixed deps and test + + 28 Jun 2011; Justin Lecher -files/0.3.1-as-needed.patch, + -files/0.4_pre2-as-needed.patch, + -files/0.3.1-fix-compilation-with-guile-1.8.patch, + -files/0.3.1-link-against-guile-gtk-properly.patch, + -files/0.3.3-as-needed.patch, + -files/0.3.3-link-against-guile-gtk-properly.patch, + -files/0.4_pre2-link-against-guile-gtk-properly.patch, + -files/0.4_pre2-r549-fix-namespace-error.patch, -files/glib.m4, + -files/gtk.m4: + Cleaned unneeded patches + +*coot-0.6.2 (28 Jun 2011) + + 28 Jun 2011; Justin Lecher + +files/0.6.2-clipper-config.patch, +files/0.6.2-gl.patch, + +files/0.6.2-mmdb-config.patch, coot-0.6.1.ebuild, +coot-0.6.2.ebuild, + metadata.xml: + Version Bump + + 02 Mar 2011; Justin Lecher coot-0.6.1.ebuild: + Correct Slots for gtk 3 introduction to tree + + 02 Mar 2011; Justin Lecher coot-0.6.1.ebuild: + Correct Slots for gtk 3 introduction to tree + + 31 Jan 2011; Justin Lecher -coot-0.6.ebuild: + Cleaned old + + 25 Jan 2011; Christian Faulhammer coot-0.6.1.ebuild: + stable x86, bug 352043 + + 20 Jan 2011; Markos Chandras coot-0.6.1.ebuild: + Stable on amd64 wrt bug #352043 + + 18 Jan 2011; Justin Lecher coot-0.6.1.ebuild: + Fix for tests, #333845 + + 12 Jan 2011; Justin Lecher coot-0.6.1.ebuild: + Added missing DEPEND on bc + + 24 Sep 2010; Justin Lecher coot-0.6.ebuild, + coot-0.6.1.ebuild: + Fixed guile-gtk version DEP + + 24 Sep 2010; Justin Lecher coot-0.6.1.ebuild: + Keyworded for ~-linux + + 16 Sep 2010; Tomáš Chvátal coot-0.6.ebuild, + coot-0.6.1.ebuild: + virtual/glut -> media-libs/glut + + 17 May 2010; Justin Lecher coot-0.6.ebuild, + coot-0.6.1.ebuild: + Fix for test, #318605; added missing deps on libidn & libpng + +*coot-0.6.1 (17 May 2010) + + 17 May 2010; Justin Lecher +files/0.6.1-libpng14.patch, + +coot-0.6.1.ebuild: + Version Bump + + 22 Apr 2010; Justin Lecher coot-0.6.ebuild: + Fixes for Python ABIs + + 26 Feb 2010; Justin Lecher coot-0.6.ebuild: + Missing sci-libs/mmdb DEP added + +*coot-0.6 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher -coot-0.1.2.ebuild, + -coot-0.3.1.ebuild, -coot-0.3.3.ebuild, -coot-0.4_pre2-r549.ebuild, + +coot-0.6.ebuild, +files/glib.m4, +files/gtk.m4: + Version Bump, removed broken versions + + 10 Oct 2009; Patrick Lauer coot-0.1.2.ebuild, + coot-0.3.1.ebuild, coot-0.3.3.ebuild, coot-0.4_pre2-r549.ebuild: + Fixing Homepage, half of #285068 + + 17 Apr 2009; Sébastien Fabbro coot-0.4_pre2-r549: + Fixed license, thanks jlec + + 11 Feb 2009; Donnie Berkholz ; coot-0.1.2.ebuild, + coot-0.3.1.ebuild, coot-0.3.3.ebuild: + (#258543) Remove duplicate python deps (walch.martin at web.de). + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + +*coot-0.4_pre2-r549 (19 Dec 2007) + + 19 Dec 2007; Donnie Berkholz ; + +files/0.4_pre2-as-needed.patch, + +files/0.4_pre2-link-against-guile-gtk-properly.patch, + +files/0.4_pre2-r549-fix-namespace-error.patch, + +coot-0.4_pre2-r549.ebuild: + Bump to 0.4 prerelease, unkeyworded. Use a package.keywords entry with '**' + for the keyword to install. + +*coot-0.3.3 (16 Aug 2007) + + 16 Aug 2007; Donnie Berkholz ; + +files/0.3.3-as-needed.patch, + +files/0.3.3-link-against-guile-gtk-properly.patch, +coot-0.3.3.ebuild: + Bump. Reads CNS maps, handles anisotropy better, other bugfixes and features. + + 22 Jun 2007; Donnie Berkholz ; + +files/0.3.1-link-against-guile-gtk-properly.patch, + +files/0.3.1-fix-compilation-with-guile-1.8.patch, coot-0.3.1.ebuild: + Add USE=new-interface to prefer gtk2, which is still experimental. Add + patches to make it work with guile 1.8 and link against guile-gtk properly. + Change src_install() make to emake -j1 so other MAKEOPTS get through. + + 30 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: + Keyword ~ppc. + + 29 May 2007; Donnie Berkholz ; coot-0.3.1.ebuild: + Require >=x11-libs/gtk-canvas-0.1.1-r2 for --as-needed linker flag. + +*coot-0.3.1 (29 May 2007) + + 29 May 2007; Donnie Berkholz ; + +files/0.3.1-as-needed.patch, +coot-0.3.1.ebuild: + Bump to latest version. Now uses external, slotted sci-libs/clipper instead + of the one in ccp4, because it needs newer versions than those contained in + ccp4. + + 15 Mar 2007; Danny van Dyk coot-0.1.2.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 06 Jan 2007; Danny van Dyk -coot-0.1.2_pre1.ebuild: + QA: Removed unused versions. + + 26 Sep 2006; Donnie Berkholz ; coot-0.1.2.ebuild: + Stable on x86/ppc. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*coot-0.1.2 (06 Sep 2006) + + 06 Sep 2006; Donnie Berkholz ; +coot-0.1.2.ebuild: + Bump. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 28 Jun 2006; Donnie Berkholz ; + coot-0.1.2_pre1.ebuild: + Add missing dep on x11-libs/gtkglext. + +*coot-0.1.2_pre1 (16 Jun 2006) + + 16 Jun 2006; Donnie Berkholz ; +metadata.xml, + +coot-0.1.2_pre1.ebuild: + Add the Crystallographic Object-Oriented Toolkit for model building, + completion and validation. diff --git a/sci-chemistry/cyana/ChangeLog b/sci-chemistry/cyana/ChangeLog deleted file mode 100644 index bbcf1e25..00000000 --- a/sci-chemistry/cyana/ChangeLog +++ /dev/null @@ -1,65 +0,0 @@ -# ChangeLog for sci-chemistry/cyana -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.17 2015/08/04 10:56:10 jlec Exp $ - - 04 Aug 2015; Justin Lecher cyana-2.1.ebuild: - Update HOMEPAGE - - 30 Jul 2015; Justin Lecher cyana-2.1.ebuild: - Fix pointer to download instructions, bug #556320 - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 27 Apr 2013; Ulrich Müller cyana-2.1.ebuild: - Fix LICENSE, bug 465692. - - 08 Feb 2013; Justin Lecher cyana-2.1.ebuild, metadata.xml: - We only support intel compiler - - 19 Oct 2012; Justin Lecher cyana-2.1.ebuild, metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher cyana-2.1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher cyana-2.1.ebuild: - Added fortran-2.eclass support - - 06 Apr 2011; Justin Lecher +files/2.1-xiar.patch, - cyana-2.1.ebuild: - Using xiar instead of ar - - 05 Jan 2011; Justin Lecher files/2.1-expire.patch: - Let cyana run forever, thanks xarthisius for the patch - - 05 Jan 2011; Justin Lecher files/2.1-expire.patch: - Making cyana work in 2011 - - 20 Dec 2010; Justin Lecher cyana-2.1.ebuild: - Fix installation problem due to wrong detection of binary nameing - - 17 Dec 2010; Justin Lecher cyana-2.1.ebuild: - Fix for fortran.eclass removal - - 16 Dec 2010; Justin Lecher cyana-2.1.ebuild: - Removal of fortran.eclass, #348851 - - 16 Nov 2010; Justin Lecher cyana-2.1.ebuild: - Removed not needed line from ebuild - - 25 Oct 2010; Justin Lecher +files/2.1-expire.patch, - cyana-2.1.ebuild: - Expand expire period - -*cyana-2.1 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher (jlec) +files/2.1-exec.patch, - +files/2.1-typo.patch, +cyana-2.1.ebuild, +metadata.xml: - CYANA ((c) by Peter Gu"ntert) is a program for automated structure - calculation of biological macromolecules on the basis of conformational - constraints from NMR. The combination of automated NOESY cross peak - assignment, structure calculation with a fast torsion angle dynamics - algorithm, and the ease-of-use of CYANA provide for unprecedented - efficiency in NMR protein structure determination. diff --git a/sci-chemistry/cyana/ChangeLog-2015 b/sci-chemistry/cyana/ChangeLog-2015 new file mode 100644 index 00000000..bbcf1e25 --- /dev/null +++ b/sci-chemistry/cyana/ChangeLog-2015 @@ -0,0 +1,65 @@ +# ChangeLog for sci-chemistry/cyana +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/cyana/ChangeLog,v 1.17 2015/08/04 10:56:10 jlec Exp $ + + 04 Aug 2015; Justin Lecher cyana-2.1.ebuild: + Update HOMEPAGE + + 30 Jul 2015; Justin Lecher cyana-2.1.ebuild: + Fix pointer to download instructions, bug #556320 + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 27 Apr 2013; Ulrich Müller cyana-2.1.ebuild: + Fix LICENSE, bug 465692. + + 08 Feb 2013; Justin Lecher cyana-2.1.ebuild, metadata.xml: + We only support intel compiler + + 19 Oct 2012; Justin Lecher cyana-2.1.ebuild, metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher cyana-2.1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher cyana-2.1.ebuild: + Added fortran-2.eclass support + + 06 Apr 2011; Justin Lecher +files/2.1-xiar.patch, + cyana-2.1.ebuild: + Using xiar instead of ar + + 05 Jan 2011; Justin Lecher files/2.1-expire.patch: + Let cyana run forever, thanks xarthisius for the patch + + 05 Jan 2011; Justin Lecher files/2.1-expire.patch: + Making cyana work in 2011 + + 20 Dec 2010; Justin Lecher cyana-2.1.ebuild: + Fix installation problem due to wrong detection of binary nameing + + 17 Dec 2010; Justin Lecher cyana-2.1.ebuild: + Fix for fortran.eclass removal + + 16 Dec 2010; Justin Lecher cyana-2.1.ebuild: + Removal of fortran.eclass, #348851 + + 16 Nov 2010; Justin Lecher cyana-2.1.ebuild: + Removed not needed line from ebuild + + 25 Oct 2010; Justin Lecher +files/2.1-expire.patch, + cyana-2.1.ebuild: + Expand expire period + +*cyana-2.1 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) +files/2.1-exec.patch, + +files/2.1-typo.patch, +cyana-2.1.ebuild, +metadata.xml: + CYANA ((c) by Peter Gu"ntert) is a program for automated structure + calculation of biological macromolecules on the basis of conformational + constraints from NMR. The combination of automated NOESY cross peak + assignment, structure calculation with a fast torsion angle dynamics + algorithm, and the ease-of-use of CYANA provide for unprecedented + efficiency in NMR protein structure determination. diff --git a/sci-chemistry/dssp/ChangeLog b/sci-chemistry/dssp/ChangeLog deleted file mode 100644 index 86805520..00000000 --- a/sci-chemistry/dssp/ChangeLog +++ /dev/null @@ -1,84 +0,0 @@ -# ChangeLog for sci-chemistry/dssp -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/ChangeLog,v 1.17 2015/04/07 14:37:03 jlec Exp $ - - 26 Dec 2014; Justin Lecher -dssp-0.70831.ebuild, - -dssp-2.0.4.ebuild, -dssp-2.1.0.ebuild: - Drop old, fixes #525622 - - 26 Dec 2014; Agostino Sarubbo dssp-2.2.1-r1.ebuild: - Stable for x86, wrt bug #525624 - - 24 Dec 2014; Chema Alonso dssp-2.2.1-r1.ebuild: - Stable for amd64 wrt bug #525624 - -*dssp-2.2.1-r1 (25 Jun 2014) - - 25 Jun 2014; Justin Lecher -dssp-2.2.1.ebuild, - +dssp-2.2.1-r1.ebuild: - Fix evil typo - -*dssp-2.2.1 (14 May 2014) - - 14 May 2014; Justin Lecher +dssp-2.2.1.ebuild: - Version Bump - - 09 Jul 2013; Justin Lecher dssp-2.1.0.ebuild: - Add subslot for boost - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - -*dssp-2.1.0 (06 Mar 2013) - - 06 Mar 2013; Justin Lecher dssp-2.0.4.ebuild, - +dssp-2.1.0.ebuild, +files/dssp-2.1.0-gentoo.patch: - Version Bump; add missing dep on dev-libs/boost - - 28 Feb 2013; Justin Lecher -dssp-070831.ebuild, - metadata.xml: - Drop old - -*dssp-0.70831 (13 Jun 2012) - - 13 Jun 2012; Justin Lecher +dssp-0.70831.ebuild, - -dssp-101007.ebuild: - Change Version numbers to be lower 1 in order to be able to follow upstream - new versioning scheme; Drop old unstable - -*dssp-2.0.4 (03 Jun 2012) - - 03 Jun 2012; Justin Lecher +dssp-2.0.4.ebuild, - +files/dssp-2.0.4-gcc47.patch, +files/dssp-2.0.4-gentoo.patch, metadata.xml: - Version Bump - - 13 Apr 2011; Justin Lecher dssp-101007.ebuild: - Fixed URL for download, #363175 - -*dssp-101007 (14 Oct 2010) - - 14 Oct 2010; Justin Lecher +dssp-101007.ebuild: - Version Bump - - 15 Jul 2010; Markus Meier dssp-070831.ebuild: - x86 stable, bug #326043 - - 28 Jun 2010; Christoph Mende dssp-070831.ebuild: - Stable on amd64 wrt bug #326043 - -*dssp-070831 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher (jlec) +dssp-070831.ebuild, - +files/Makefile, +metadata.xml: - The DSSP program was designed by Wolfgang Kabsch and Chris Sander to - standardize secondary structure assignment. DSSP is a database of - secondary structure assignments (and much more) for all protein entries in - the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP - entries from PDB entries. - - If you use DSSP, please quote: - - Dictionary of protein secondary structure: pattern recognition of - hydrogen-bonded and geometrical features. - Biopolymers. 1983 Dec;22(12):2577-637. - PMID: 6667333; UI: 84128824. diff --git a/sci-chemistry/dssp/ChangeLog-2015 b/sci-chemistry/dssp/ChangeLog-2015 new file mode 100644 index 00000000..86805520 --- /dev/null +++ b/sci-chemistry/dssp/ChangeLog-2015 @@ -0,0 +1,84 @@ +# ChangeLog for sci-chemistry/dssp +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/ChangeLog,v 1.17 2015/04/07 14:37:03 jlec Exp $ + + 26 Dec 2014; Justin Lecher -dssp-0.70831.ebuild, + -dssp-2.0.4.ebuild, -dssp-2.1.0.ebuild: + Drop old, fixes #525622 + + 26 Dec 2014; Agostino Sarubbo dssp-2.2.1-r1.ebuild: + Stable for x86, wrt bug #525624 + + 24 Dec 2014; Chema Alonso dssp-2.2.1-r1.ebuild: + Stable for amd64 wrt bug #525624 + +*dssp-2.2.1-r1 (25 Jun 2014) + + 25 Jun 2014; Justin Lecher -dssp-2.2.1.ebuild, + +dssp-2.2.1-r1.ebuild: + Fix evil typo + +*dssp-2.2.1 (14 May 2014) + + 14 May 2014; Justin Lecher +dssp-2.2.1.ebuild: + Version Bump + + 09 Jul 2013; Justin Lecher dssp-2.1.0.ebuild: + Add subslot for boost + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + +*dssp-2.1.0 (06 Mar 2013) + + 06 Mar 2013; Justin Lecher dssp-2.0.4.ebuild, + +dssp-2.1.0.ebuild, +files/dssp-2.1.0-gentoo.patch: + Version Bump; add missing dep on dev-libs/boost + + 28 Feb 2013; Justin Lecher -dssp-070831.ebuild, + metadata.xml: + Drop old + +*dssp-0.70831 (13 Jun 2012) + + 13 Jun 2012; Justin Lecher +dssp-0.70831.ebuild, + -dssp-101007.ebuild: + Change Version numbers to be lower 1 in order to be able to follow upstream + new versioning scheme; Drop old unstable + +*dssp-2.0.4 (03 Jun 2012) + + 03 Jun 2012; Justin Lecher +dssp-2.0.4.ebuild, + +files/dssp-2.0.4-gcc47.patch, +files/dssp-2.0.4-gentoo.patch, metadata.xml: + Version Bump + + 13 Apr 2011; Justin Lecher dssp-101007.ebuild: + Fixed URL for download, #363175 + +*dssp-101007 (14 Oct 2010) + + 14 Oct 2010; Justin Lecher +dssp-101007.ebuild: + Version Bump + + 15 Jul 2010; Markus Meier dssp-070831.ebuild: + x86 stable, bug #326043 + + 28 Jun 2010; Christoph Mende dssp-070831.ebuild: + Stable on amd64 wrt bug #326043 + +*dssp-070831 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) +dssp-070831.ebuild, + +files/Makefile, +metadata.xml: + The DSSP program was designed by Wolfgang Kabsch and Chris Sander to + standardize secondary structure assignment. DSSP is a database of + secondary structure assignments (and much more) for all protein entries in + the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP + entries from PDB entries. + + If you use DSSP, please quote: + + Dictionary of protein secondary structure: pattern recognition of + hydrogen-bonded and geometrical features. + Biopolymers. 1983 Dec;22(12):2577-637. + PMID: 6667333; UI: 84128824. diff --git a/sci-chemistry/easychem/ChangeLog b/sci-chemistry/easychem/ChangeLog deleted file mode 100644 index f926e520..00000000 --- a/sci-chemistry/easychem/ChangeLog +++ /dev/null @@ -1,99 +0,0 @@ -# ChangeLog for sci-chemistry/easychem -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/easychem/ChangeLog,v 1.25 2014/10/10 11:06:13 jlec Exp $ - - 10 Oct 2014; Justin Lecher -easychem-0.6.ebuild: - Drop old - - 10 Oct 2014; Agostino Sarubbo easychem-0.6-r1.ebuild: - Stable for x86, wrt bug #523628 - - 09 Oct 2014; Agostino Sarubbo easychem-0.6-r1.ebuild: - Stable for amd64, wrt bug #523628 - - 25 Sep 2014; Justin Lecher easychem-0.6-r1.ebuild, - metadata.xml: - Bump to EAPI=5 - - 04 May 2012; Jeff Horelick easychem-0.6.ebuild, - easychem-0.6-r1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 29 Apr 2012; Justin Lecher files/0.6-gentoo.patch, - metadata.xml: - Add missing lib to link with gold - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #70723 - - 02 Mar 2011; Justin Lecher easychem-0.6.ebuild, - easychem-0.6-r1.ebuild: - Correct Slots for gtk 3 introduction to tree - -*easychem-0.6-r1 (03 Oct 2010) - - 03 Oct 2010; Justin Lecher +files/0.6-gentoo.patch, - +easychem-0.6-r1.ebuild: - Respecting LDFLAGS now, 333847; Prefix ready and keyworded for ~-linux - - 17 Jun 2010; Justin Lecher easychem-0.6.ebuild: - Some QA - - 26 Dec 2009; Peter Volkov easychem-0.6.ebuild: - virtual/ghostscript->app-text/ghostscript-gpl: ghostscript-gpl is the only - implementation left in the tree. - - 01 Aug 2009; Marcus D. Hanwell easychem-0.6.ebuild, - +files/easychem-0.6-prestrip.patch: - Stop pre-stripping files, fixes bug 252034. Thanks to My Th - for the patch. - - 21 Apr 2008; Jeff Gardner easychem-0.6.ebuild: - Fix RDEPEND for bug #217278 - - 29 Apr 2007; Jeff Gardner easychem-0.6.ebuild: - Adding ~amd64. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 07 Jul 2006; Donnie Berkholz ; ChangeLog: - Update to my new email address. - - 13 Apr 2006; Patrick McLean easychem-0.6.ebuild: - Remove amd64 keyword, this deps on media-gfx/pstoedit which deps on - media-libs/libemf which only ever worked on amd64 out of luck (See bug - 127328). - - 02 Nov 2005; Stefan Schweizer easychem-0.6.ebuild: - Remove depend on \! easychem-0.6.ebuild: - Stable on amd64 and x86. - - 13 Jul 2005; Donnie Berkholz ; easychem-0.6.ebuild: - Use a little trickery to allow virtual/ghostscript instead of just - >=app-text/ghostscript-7.07.1-r2 but retain the dependency by blocking lower - versions. - - 29 May 2005; Stephanie Lockwood-Childs - easychem-0.6.ebuild: - mark ~ppc, fixes bug #94163 - -*easychem-0.6 (10 May 2005) - - 10 May 2005; Marcus D. Hanwell -easychem-0.5.ebuild, - +easychem-0.6.ebuild: - Version bump. - -*easychem-0.5 (19 Apr 2005) - - 19 Apr 2005; Marcus D. Hanwell +metadata.xml, - +easychem-0.5.ebuild: - Initial import. Thanks to Max Valdez and Olivier - Fisette for the ebuild this is based upon. Closes bug - 39806. diff --git a/sci-chemistry/easychem/ChangeLog-2015 b/sci-chemistry/easychem/ChangeLog-2015 new file mode 100644 index 00000000..f926e520 --- /dev/null +++ b/sci-chemistry/easychem/ChangeLog-2015 @@ -0,0 +1,99 @@ +# ChangeLog for sci-chemistry/easychem +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/easychem/ChangeLog,v 1.25 2014/10/10 11:06:13 jlec Exp $ + + 10 Oct 2014; Justin Lecher -easychem-0.6.ebuild: + Drop old + + 10 Oct 2014; Agostino Sarubbo easychem-0.6-r1.ebuild: + Stable for x86, wrt bug #523628 + + 09 Oct 2014; Agostino Sarubbo easychem-0.6-r1.ebuild: + Stable for amd64, wrt bug #523628 + + 25 Sep 2014; Justin Lecher easychem-0.6-r1.ebuild, + metadata.xml: + Bump to EAPI=5 + + 04 May 2012; Jeff Horelick easychem-0.6.ebuild, + easychem-0.6-r1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 29 Apr 2012; Justin Lecher files/0.6-gentoo.patch, + metadata.xml: + Add missing lib to link with gold + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #70723 + + 02 Mar 2011; Justin Lecher easychem-0.6.ebuild, + easychem-0.6-r1.ebuild: + Correct Slots for gtk 3 introduction to tree + +*easychem-0.6-r1 (03 Oct 2010) + + 03 Oct 2010; Justin Lecher +files/0.6-gentoo.patch, + +easychem-0.6-r1.ebuild: + Respecting LDFLAGS now, 333847; Prefix ready and keyworded for ~-linux + + 17 Jun 2010; Justin Lecher easychem-0.6.ebuild: + Some QA + + 26 Dec 2009; Peter Volkov easychem-0.6.ebuild: + virtual/ghostscript->app-text/ghostscript-gpl: ghostscript-gpl is the only + implementation left in the tree. + + 01 Aug 2009; Marcus D. Hanwell easychem-0.6.ebuild, + +files/easychem-0.6-prestrip.patch: + Stop pre-stripping files, fixes bug 252034. Thanks to My Th + for the patch. + + 21 Apr 2008; Jeff Gardner easychem-0.6.ebuild: + Fix RDEPEND for bug #217278 + + 29 Apr 2007; Jeff Gardner easychem-0.6.ebuild: + Adding ~amd64. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 07 Jul 2006; Donnie Berkholz ; ChangeLog: + Update to my new email address. + + 13 Apr 2006; Patrick McLean easychem-0.6.ebuild: + Remove amd64 keyword, this deps on media-gfx/pstoedit which deps on + media-libs/libemf which only ever worked on amd64 out of luck (See bug + 127328). + + 02 Nov 2005; Stefan Schweizer easychem-0.6.ebuild: + Remove depend on \! easychem-0.6.ebuild: + Stable on amd64 and x86. + + 13 Jul 2005; Donnie Berkholz ; easychem-0.6.ebuild: + Use a little trickery to allow virtual/ghostscript instead of just + >=app-text/ghostscript-7.07.1-r2 but retain the dependency by blocking lower + versions. + + 29 May 2005; Stephanie Lockwood-Childs + easychem-0.6.ebuild: + mark ~ppc, fixes bug #94163 + +*easychem-0.6 (10 May 2005) + + 10 May 2005; Marcus D. Hanwell -easychem-0.5.ebuild, + +easychem-0.6.ebuild: + Version bump. + +*easychem-0.5 (19 Apr 2005) + + 19 Apr 2005; Marcus D. Hanwell +metadata.xml, + +easychem-0.5.ebuild: + Initial import. Thanks to Max Valdez and Olivier + Fisette for the ebuild this is based upon. Closes bug + 39806. diff --git a/sci-chemistry/eden/ChangeLog b/sci-chemistry/eden/ChangeLog deleted file mode 100644 index 409ab780..00000000 --- a/sci-chemistry/eden/ChangeLog +++ /dev/null @@ -1,87 +0,0 @@ -# ChangeLog for sci-chemistry/eden -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/ChangeLog,v 1.23 2015/04/20 20:26:23 jlec Exp $ - - 20 Apr 2015; Justin Lecher -eden-5.3-r1.ebuild: - Drop old - - 19 Apr 2015; Agostino Sarubbo eden-5.3-r2.ebuild: - Stable for x86, wrt bug #546376 - - 13 Apr 2015; Agostino Sarubbo eden-5.3-r2.ebuild: - Stable for amd64, wrt bug #546376 - -*eden-5.3-r2 (11 Mar 2015) - - 11 Mar 2015; Justin Lecher +eden-5.3-r2.ebuild, - +files/eden-5.3-format-security.patch, -eden-5.3.ebuild: - Fix for format-security, bug #542276; move to new python eclasses and EAPI=5 - - 19 Feb 2013; Justin Lecher eden-5.3-r1.ebuild, - metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config - - 26 Jul 2012; Justin Lecher files/5.3-makefile-fixes.patch, - eden-5.3-r1.ebuild, +files/eden-5.3-impl-dec.patch, metadata.xml: - Respect the CFLAGS everywhere, #428190; fix some implicit declarations; bump - EAPI to 4 - - 04 May 2012; Jeff Horelick eden-5.3-r1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 18 Dec 2011; Pawel Hajdan jr eden-5.3-r1.ebuild: - x86 stable wrt bug #393823 - - 18 Dec 2011; Agostino Sarubbo eden-5.3-r1.ebuild: - Stable for AMD64, wrt bug #393823 - - 16 Dec 2011; Justin Lecher eden-5.3-r1.ebuild: - Add missing die, use pkg-config for gsl detection. - -*eden-5.3-r1 (18 Sep 2010) - - 18 Sep 2010; Justin Lecher - +files/5.3-makefile-fixes.patch, +eden-5.3-r1.ebuild: - Respecting LDFLAGS, 337557; using python.eclass, QA fixes, prefix fixes, - keyworded for ~amd64 - - 23 Jun 2010; Sébastien Fabbro eden-5.3.ebuild: - Removed bindist flag, should be compatible GPL-3 anyway - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - - 17 Feb 2008; Markus Dittrich eden-5.3.ebuild: - Corrected out of date HOMEPAGE and switched SRC_URI to Gentoo mirrors. - - 15 Feb 2008; Markus Dittrich eden-5.3.ebuild: - Fixed QA issues and added bindist for >=gsl-1.10 (see bug #199451). - - 28 Apr 2007; Sven Wegener eden-5.3.ebuild: - Drop dodir from dodir/*into combination. - - 15 Mar 2007; Danny van Dyk eden-5.3.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; eden-5.3.ebuild: - x86 stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*eden-5.3 (16 Dec 2005) - - 16 Dec 2005; Donnie Berkholz ; - +files/makefile-fixes.patch, +metadata.xml, +eden-5.3.ebuild: - A crystallographic real-space electron-density refinement and optimization - program. diff --git a/sci-chemistry/eden/ChangeLog-2015 b/sci-chemistry/eden/ChangeLog-2015 new file mode 100644 index 00000000..409ab780 --- /dev/null +++ b/sci-chemistry/eden/ChangeLog-2015 @@ -0,0 +1,87 @@ +# ChangeLog for sci-chemistry/eden +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/ChangeLog,v 1.23 2015/04/20 20:26:23 jlec Exp $ + + 20 Apr 2015; Justin Lecher -eden-5.3-r1.ebuild: + Drop old + + 19 Apr 2015; Agostino Sarubbo eden-5.3-r2.ebuild: + Stable for x86, wrt bug #546376 + + 13 Apr 2015; Agostino Sarubbo eden-5.3-r2.ebuild: + Stable for amd64, wrt bug #546376 + +*eden-5.3-r2 (11 Mar 2015) + + 11 Mar 2015; Justin Lecher +eden-5.3-r2.ebuild, + +files/eden-5.3-format-security.patch, -eden-5.3.ebuild: + Fix for format-security, bug #542276; move to new python eclasses and EAPI=5 + + 19 Feb 2013; Justin Lecher eden-5.3-r1.ebuild, + metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config + + 26 Jul 2012; Justin Lecher files/5.3-makefile-fixes.patch, + eden-5.3-r1.ebuild, +files/eden-5.3-impl-dec.patch, metadata.xml: + Respect the CFLAGS everywhere, #428190; fix some implicit declarations; bump + EAPI to 4 + + 04 May 2012; Jeff Horelick eden-5.3-r1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 18 Dec 2011; Pawel Hajdan jr eden-5.3-r1.ebuild: + x86 stable wrt bug #393823 + + 18 Dec 2011; Agostino Sarubbo eden-5.3-r1.ebuild: + Stable for AMD64, wrt bug #393823 + + 16 Dec 2011; Justin Lecher eden-5.3-r1.ebuild: + Add missing die, use pkg-config for gsl detection. + +*eden-5.3-r1 (18 Sep 2010) + + 18 Sep 2010; Justin Lecher + +files/5.3-makefile-fixes.patch, +eden-5.3-r1.ebuild: + Respecting LDFLAGS, 337557; using python.eclass, QA fixes, prefix fixes, + keyworded for ~amd64 + + 23 Jun 2010; Sébastien Fabbro eden-5.3.ebuild: + Removed bindist flag, should be compatible GPL-3 anyway + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + + 17 Feb 2008; Markus Dittrich eden-5.3.ebuild: + Corrected out of date HOMEPAGE and switched SRC_URI to Gentoo mirrors. + + 15 Feb 2008; Markus Dittrich eden-5.3.ebuild: + Fixed QA issues and added bindist for >=gsl-1.10 (see bug #199451). + + 28 Apr 2007; Sven Wegener eden-5.3.ebuild: + Drop dodir from dodir/*into combination. + + 15 Mar 2007; Danny van Dyk eden-5.3.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; eden-5.3.ebuild: + x86 stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*eden-5.3 (16 Dec 2005) + + 16 Dec 2005; Donnie Berkholz ; + +files/makefile-fixes.patch, +metadata.xml, +eden-5.3.ebuild: + A crystallographic real-space electron-density refinement and optimization + program. diff --git a/sci-chemistry/elem/ChangeLog b/sci-chemistry/elem/ChangeLog deleted file mode 100644 index 6fc40c24..00000000 --- a/sci-chemistry/elem/ChangeLog +++ /dev/null @@ -1,69 +0,0 @@ -# ChangeLog for sci-chemistry/elem -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/elem/ChangeLog,v 1.11 2013/07/21 09:44:51 pacho Exp $ - - 21 Jul 2013; Pacho Ramos metadata.xml: - Cleanup due #473480 - - 06 Sep 2010; Kacper Kowalik elem-1.0.3-r1.ebuild, - +elem-1.0.3-r2.ebuild: - Respect LDFLAGS wrt bug 336190. Thanks to Diego for the report. Fix - implicit function declarations, quote S, add missing RDEPEND. - - 05 Oct 2006; Gustavo Zacarias elem-1.0.3-r1.ebuild: - Stable on sparc - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 04 Sep 2006; Gustavo Zacarias elem-1.0.3-r1.ebuild: - Keyworded ~sparc - - 25 Jan 2006; Patrick Kursawe elem-1.0.3-r1.ebuild, - -elem-1.0.3-r2.ebuild: - Don't force upgrade for fixed modular X deps - -*elem-1.0.3-r2 (20 Jan 2006) - - 20 Jan 2006; Patrick Kursawe +elem-1.0.3-r2.ebuild: - Porting to modular X - - 29 May 2005; Marcus D. Hanwell elem-1.0.3-r1.ebuild: - Stable on amd64. - -*elem-1.0.3-r1 (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +elem-1.0.3-r1.ebuild: - Moved from app-sci/elem to sci-chemistry/elem. - - 13 Dec 2004; Patrick Kursawe elem-1.0.3-r1.ebuild, - -elem-1.0.3.ebuild: - Stable for x86; cleanup - -*elem-1.0.3-r1 (08 Nov 2004) - - 08 Nov 2004; Patrick Kursawe -elem-1.0.1.ebuild, - +elem-1.0.3-r1.ebuild: - Now explicitly links with libXpm (bug #70057), uses user-defined CFLAGS and - gets the compiler name via toolchain-funcs. - - 01 Jul 2004; Jeremy Huddleston elem-1.0.1.ebuild, - elem-1.0.3.ebuild: - virtual/glibc -> virtual/libc - -*elem-1.0.3 (26 May 2004) - - 26 May 2004; Patrick Kursawe elem-1.0.3.ebuild: - Version bump, sed hack no longer necessary. - - 24 Apr 2003; Patrick Kursawe elem-1.0.1.ebuild : - considered stable - -*elem-1.0.1 (13 Feb 2003) - - 02 apr 2003; elem-1.0.1.ebuild: - Fixing bug 1446, removed xpm dep. - - 13 Feb 2003; Daniel Ahlberg : - Initial import. Ebuild submitted by Patrick Kursawe in #13825. diff --git a/sci-chemistry/elem/ChangeLog-2015 b/sci-chemistry/elem/ChangeLog-2015 new file mode 100644 index 00000000..6fc40c24 --- /dev/null +++ b/sci-chemistry/elem/ChangeLog-2015 @@ -0,0 +1,69 @@ +# ChangeLog for sci-chemistry/elem +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/elem/ChangeLog,v 1.11 2013/07/21 09:44:51 pacho Exp $ + + 21 Jul 2013; Pacho Ramos metadata.xml: + Cleanup due #473480 + + 06 Sep 2010; Kacper Kowalik elem-1.0.3-r1.ebuild, + +elem-1.0.3-r2.ebuild: + Respect LDFLAGS wrt bug 336190. Thanks to Diego for the report. Fix + implicit function declarations, quote S, add missing RDEPEND. + + 05 Oct 2006; Gustavo Zacarias elem-1.0.3-r1.ebuild: + Stable on sparc + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 04 Sep 2006; Gustavo Zacarias elem-1.0.3-r1.ebuild: + Keyworded ~sparc + + 25 Jan 2006; Patrick Kursawe elem-1.0.3-r1.ebuild, + -elem-1.0.3-r2.ebuild: + Don't force upgrade for fixed modular X deps + +*elem-1.0.3-r2 (20 Jan 2006) + + 20 Jan 2006; Patrick Kursawe +elem-1.0.3-r2.ebuild: + Porting to modular X + + 29 May 2005; Marcus D. Hanwell elem-1.0.3-r1.ebuild: + Stable on amd64. + +*elem-1.0.3-r1 (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +elem-1.0.3-r1.ebuild: + Moved from app-sci/elem to sci-chemistry/elem. + + 13 Dec 2004; Patrick Kursawe elem-1.0.3-r1.ebuild, + -elem-1.0.3.ebuild: + Stable for x86; cleanup + +*elem-1.0.3-r1 (08 Nov 2004) + + 08 Nov 2004; Patrick Kursawe -elem-1.0.1.ebuild, + +elem-1.0.3-r1.ebuild: + Now explicitly links with libXpm (bug #70057), uses user-defined CFLAGS and + gets the compiler name via toolchain-funcs. + + 01 Jul 2004; Jeremy Huddleston elem-1.0.1.ebuild, + elem-1.0.3.ebuild: + virtual/glibc -> virtual/libc + +*elem-1.0.3 (26 May 2004) + + 26 May 2004; Patrick Kursawe elem-1.0.3.ebuild: + Version bump, sed hack no longer necessary. + + 24 Apr 2003; Patrick Kursawe elem-1.0.1.ebuild : + considered stable + +*elem-1.0.1 (13 Feb 2003) + + 02 apr 2003; elem-1.0.1.ebuild: + Fixing bug 1446, removed xpm dep. + + 13 Feb 2003; Daniel Ahlberg : + Initial import. Ebuild submitted by Patrick Kursawe in #13825. diff --git a/sci-chemistry/freeon/ChangeLog b/sci-chemistry/freeon/ChangeLog deleted file mode 100644 index fa067724..00000000 --- a/sci-chemistry/freeon/ChangeLog +++ /dev/null @@ -1,27 +0,0 @@ -# ChangeLog for sci-chemistry/freeon -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/freeon/ChangeLog,v 1.6 2015/06/26 16:16:47 nicolasbock Exp $ - -*freeon-1.0.10 (26 Jun 2015) - - 26 Jun 2015; Nicolas Bock +freeon-1.0.10.ebuild: - Version bump. - - 26 Jun 2015; Nicolas Bock metadata.xml: - Updated metadata.xml - - 31 Mar 2015; Ian Delaney freeon-1.0.8-r1.ebuild: - clean old impls, add py3.4 support, fixes Bug #531004 - - 26 Oct 2014; Justin Lecher freeon-1.0.8-r1.ebuild, - +files/freeon-1.0.8-blas.patch: - Fix blas/lapakc detection - - 10 Aug 2014; Sergei Trofimovich freeon-1.0.8-r1.ebuild: - QA: drop trailing '.' from DESCRIPTION - -*freeon-1.0.8-r1 (13 Dec 2013) - - 13 Dec 2013; Nicolas Bock +freeon-1.0.8-r1.ebuild, - +metadata.xml: - Moved current ebuild from sci overlay to x86. diff --git a/sci-chemistry/freeon/ChangeLog-2015 b/sci-chemistry/freeon/ChangeLog-2015 new file mode 100644 index 00000000..fa067724 --- /dev/null +++ b/sci-chemistry/freeon/ChangeLog-2015 @@ -0,0 +1,27 @@ +# ChangeLog for sci-chemistry/freeon +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/freeon/ChangeLog,v 1.6 2015/06/26 16:16:47 nicolasbock Exp $ + +*freeon-1.0.10 (26 Jun 2015) + + 26 Jun 2015; Nicolas Bock +freeon-1.0.10.ebuild: + Version bump. + + 26 Jun 2015; Nicolas Bock metadata.xml: + Updated metadata.xml + + 31 Mar 2015; Ian Delaney freeon-1.0.8-r1.ebuild: + clean old impls, add py3.4 support, fixes Bug #531004 + + 26 Oct 2014; Justin Lecher freeon-1.0.8-r1.ebuild, + +files/freeon-1.0.8-blas.patch: + Fix blas/lapakc detection + + 10 Aug 2014; Sergei Trofimovich freeon-1.0.8-r1.ebuild: + QA: drop trailing '.' from DESCRIPTION + +*freeon-1.0.8-r1 (13 Dec 2013) + + 13 Dec 2013; Nicolas Bock +freeon-1.0.8-r1.ebuild, + +metadata.xml: + Moved current ebuild from sci overlay to x86. diff --git a/sci-chemistry/gabedit/ChangeLog b/sci-chemistry/gabedit/ChangeLog deleted file mode 100644 index 71d19c9f..00000000 --- a/sci-chemistry/gabedit/ChangeLog +++ /dev/null @@ -1,128 +0,0 @@ -# ChangeLog for sci-chemistry/gabedit -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gabedit/ChangeLog,v 1.27 2015/04/07 14:37:10 jlec Exp $ - -*gabedit-2.4.8 (24 Apr 2014) - - 24 Apr 2014; Justin Lecher +gabedit-2.4.8.ebuild: - Version Bump, #508388 - - 18 Sep 2013; Justin Lecher -gabedit-2.3.6.ebuild, - -gabedit-2.4.0.ebuild, -gabedit-2.4.2.ebuild, -gabedit-2.4.3.ebuild, - -gabedit-2.4.5.ebuild: - Drop old - - 14 Sep 2013; Agostino Sarubbo gabedit-2.4.6.ebuild: - Stable for x86, wrt bug #481632 - - 31 Aug 2013; Agostino Sarubbo gabedit-2.4.6.ebuild: - Stable for amd64, wrt bug #481632 - - 20 Aug 2013; Justin Lecher Manifest: - Fix checksums - -*gabedit-2.4.7 (19 Aug 2013) - - 19 Aug 2013; Justin Lecher +gabedit-2.4.7.ebuild: - Version Bump, #481626 - -*gabedit-2.4.6 (09 Apr 2013) - - 09 Apr 2013; Justin Lecher +gabedit-2.4.6.ebuild, - metadata.xml: - Version Bump, #465128 - - 14 Dec 2012; Ulrich Müller gabedit-2.3.6.ebuild, - gabedit-2.4.0.ebuild, gabedit-2.4.2.ebuild, gabedit-2.4.3.ebuild, - gabedit-2.4.5.ebuild: - Fix LICENSE, MIT (Expat) according to License file. - -*gabedit-2.4.5 (29 Nov 2012) - - 29 Nov 2012; Justin Lecher +gabedit-2.4.5.ebuild: - Version Bump, #444155 - -*gabedit-2.4.3 (02 Jul 2012) - - 02 Jul 2012; Justin Lecher gabedit-2.3.6.ebuild, - +gabedit-2.4.3.ebuild, metadata.xml: - Version Bump, drop Max from metadata.xml - - 14 Jun 2012; Justin Lecher gabedit-2.4.2.ebuild: - Add gold underlinking patch - - 04 May 2012; Jeff Horelick gabedit-2.3.6.ebuild, - gabedit-2.4.0.ebuild, gabedit-2.4.2.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*gabedit-2.4.2 (13 Mar 2012) - - 13 Mar 2012; Justin Lecher -gabedit-2.3.8.ebuild, - -gabedit-2.3.9.ebuild, +gabedit-2.4.2.ebuild, - +files/gabedit-2.4.2-gold.patch: - Version Bump thanks Maximilian Bräutigam, Fix for underlinking detected by - gold - -*gabedit-2.4.0 (05 Oct 2011) - - 05 Oct 2011; Justin Lecher +gabedit-2.4.0.ebuild: - Version Bump, #385509 - -*gabedit-2.3.9 (24 Jul 2011) - - 24 Jul 2011; Justin Lecher -gabedit-2.3.7.ebuild, - +gabedit-2.3.9.ebuild, files/CONFIG.Gentoo, metadata.xml: - Version Bump - - 21 Jun 2011; Justin Lecher gabedit-2.3.6.ebuild, - gabedit-2.3.7.ebuild, gabedit-2.3.8.ebuild, files/CONFIG.Gentoo: - Tweaking on pango deps - -*gabedit-2.3.8 (20 Jun 2011) - - 20 Jun 2011; Justin Lecher gabedit-2.3.6.ebuild, - gabedit-2.3.7.ebuild, +gabedit-2.3.8.ebuild: - Version Bump - - 31 May 2011; Markus Meier gabedit-2.3.6.ebuild: - x86 stable, bug #366717 - - 11 May 2011; Markos Chandras gabedit-2.3.6.ebuild: - Stable on amd64 wrt bug #366717 - -*gabedit-2.3.7 (09 May 2011) - - 09 May 2011; Justin Lecher -gabedit-2.3.2.ebuild, - -gabedit-2.3.3.ebuild, -gabedit-2.3.4.ebuild, -gabedit-2.3.5.ebuild, - +gabedit-2.3.7.ebuild: - Version Bump - -*gabedit-2.3.6 (04 Mar 2011) - - 04 Mar 2011; Justin Lecher +gabedit-2.3.6.ebuild: - Version Bump, provided by Max - - 02 Mar 2011; Justin Lecher gabedit-2.3.2.ebuild, - gabedit-2.3.3.ebuild, gabedit-2.3.4.ebuild, gabedit-2.3.5.ebuild: - Correct Slots for gtk 3 introduction to tree - -*gabedit-2.3.5 (30 Jan 2011) - - 30 Jan 2011; Justin Lecher +gabedit-2.3.5.ebuild: - Version Bump, prepared by Max - -*gabedit-2.3.4 (03 Jan 2011) - - 03 Jan 2011; Justin Lecher +gabedit-2.3.4.ebuild: - Version Bump - -*gabedit-2.3.3 (05 Dec 2010) - - 05 Dec 2010; Justin Lecher +gabedit-2.3.3.ebuild: - Version Bump - -*gabedit-2.3.2 (11 Nov 2010) - - 11 Nov 2010; Justin Lecher +gabedit-2.3.2.ebuild, - +files/CONFIG.Gentoo, +metadata.xml: - Initial addition diff --git a/sci-chemistry/gabedit/ChangeLog-2015 b/sci-chemistry/gabedit/ChangeLog-2015 new file mode 100644 index 00000000..71d19c9f --- /dev/null +++ b/sci-chemistry/gabedit/ChangeLog-2015 @@ -0,0 +1,128 @@ +# ChangeLog for sci-chemistry/gabedit +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gabedit/ChangeLog,v 1.27 2015/04/07 14:37:10 jlec Exp $ + +*gabedit-2.4.8 (24 Apr 2014) + + 24 Apr 2014; Justin Lecher +gabedit-2.4.8.ebuild: + Version Bump, #508388 + + 18 Sep 2013; Justin Lecher -gabedit-2.3.6.ebuild, + -gabedit-2.4.0.ebuild, -gabedit-2.4.2.ebuild, -gabedit-2.4.3.ebuild, + -gabedit-2.4.5.ebuild: + Drop old + + 14 Sep 2013; Agostino Sarubbo gabedit-2.4.6.ebuild: + Stable for x86, wrt bug #481632 + + 31 Aug 2013; Agostino Sarubbo gabedit-2.4.6.ebuild: + Stable for amd64, wrt bug #481632 + + 20 Aug 2013; Justin Lecher Manifest: + Fix checksums + +*gabedit-2.4.7 (19 Aug 2013) + + 19 Aug 2013; Justin Lecher +gabedit-2.4.7.ebuild: + Version Bump, #481626 + +*gabedit-2.4.6 (09 Apr 2013) + + 09 Apr 2013; Justin Lecher +gabedit-2.4.6.ebuild, + metadata.xml: + Version Bump, #465128 + + 14 Dec 2012; Ulrich Müller gabedit-2.3.6.ebuild, + gabedit-2.4.0.ebuild, gabedit-2.4.2.ebuild, gabedit-2.4.3.ebuild, + gabedit-2.4.5.ebuild: + Fix LICENSE, MIT (Expat) according to License file. + +*gabedit-2.4.5 (29 Nov 2012) + + 29 Nov 2012; Justin Lecher +gabedit-2.4.5.ebuild: + Version Bump, #444155 + +*gabedit-2.4.3 (02 Jul 2012) + + 02 Jul 2012; Justin Lecher gabedit-2.3.6.ebuild, + +gabedit-2.4.3.ebuild, metadata.xml: + Version Bump, drop Max from metadata.xml + + 14 Jun 2012; Justin Lecher gabedit-2.4.2.ebuild: + Add gold underlinking patch + + 04 May 2012; Jeff Horelick gabedit-2.3.6.ebuild, + gabedit-2.4.0.ebuild, gabedit-2.4.2.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*gabedit-2.4.2 (13 Mar 2012) + + 13 Mar 2012; Justin Lecher -gabedit-2.3.8.ebuild, + -gabedit-2.3.9.ebuild, +gabedit-2.4.2.ebuild, + +files/gabedit-2.4.2-gold.patch: + Version Bump thanks Maximilian Bräutigam, Fix for underlinking detected by + gold + +*gabedit-2.4.0 (05 Oct 2011) + + 05 Oct 2011; Justin Lecher +gabedit-2.4.0.ebuild: + Version Bump, #385509 + +*gabedit-2.3.9 (24 Jul 2011) + + 24 Jul 2011; Justin Lecher -gabedit-2.3.7.ebuild, + +gabedit-2.3.9.ebuild, files/CONFIG.Gentoo, metadata.xml: + Version Bump + + 21 Jun 2011; Justin Lecher gabedit-2.3.6.ebuild, + gabedit-2.3.7.ebuild, gabedit-2.3.8.ebuild, files/CONFIG.Gentoo: + Tweaking on pango deps + +*gabedit-2.3.8 (20 Jun 2011) + + 20 Jun 2011; Justin Lecher gabedit-2.3.6.ebuild, + gabedit-2.3.7.ebuild, +gabedit-2.3.8.ebuild: + Version Bump + + 31 May 2011; Markus Meier gabedit-2.3.6.ebuild: + x86 stable, bug #366717 + + 11 May 2011; Markos Chandras gabedit-2.3.6.ebuild: + Stable on amd64 wrt bug #366717 + +*gabedit-2.3.7 (09 May 2011) + + 09 May 2011; Justin Lecher -gabedit-2.3.2.ebuild, + -gabedit-2.3.3.ebuild, -gabedit-2.3.4.ebuild, -gabedit-2.3.5.ebuild, + +gabedit-2.3.7.ebuild: + Version Bump + +*gabedit-2.3.6 (04 Mar 2011) + + 04 Mar 2011; Justin Lecher +gabedit-2.3.6.ebuild: + Version Bump, provided by Max + + 02 Mar 2011; Justin Lecher gabedit-2.3.2.ebuild, + gabedit-2.3.3.ebuild, gabedit-2.3.4.ebuild, gabedit-2.3.5.ebuild: + Correct Slots for gtk 3 introduction to tree + +*gabedit-2.3.5 (30 Jan 2011) + + 30 Jan 2011; Justin Lecher +gabedit-2.3.5.ebuild: + Version Bump, prepared by Max + +*gabedit-2.3.4 (03 Jan 2011) + + 03 Jan 2011; Justin Lecher +gabedit-2.3.4.ebuild: + Version Bump + +*gabedit-2.3.3 (05 Dec 2010) + + 05 Dec 2010; Justin Lecher +gabedit-2.3.3.ebuild: + Version Bump + +*gabedit-2.3.2 (11 Nov 2010) + + 11 Nov 2010; Justin Lecher +gabedit-2.3.2.ebuild, + +files/CONFIG.Gentoo, +metadata.xml: + Initial addition diff --git a/sci-chemistry/gamess/ChangeLog b/sci-chemistry/gamess/ChangeLog deleted file mode 100644 index 0efcf005..00000000 --- a/sci-chemistry/gamess/ChangeLog +++ /dev/null @@ -1,326 +0,0 @@ -# ChangeLog for sci-chemistry/gamess -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/ChangeLog,v 1.59 2013/02/27 16:50:41 jlec Exp $ - - 27 Feb 2013; Justin Lecher gamess-20110811.1.ebuild, - files/gamess-20110811.1.gentoo.patch, metadata.xml: - Use PKG_CONFIG instead of generic pkg-config - - 19 Oct 2012; Justin Lecher gamess-20110811.1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 04 May 2012; Jeff Horelick gamess-20110811.1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*gamess-20110811.1 (13 Oct 2011) - - 13 Oct 2011; Alexey Shvetsov - -gamess-20101001.3-r1.ebuild, -files/gamess-20101001.3.gentoo.patch, - +gamess-20110811.1.ebuild, +files/gamess-20110811.1.gentoo.patch, - -files/gamess-neo-fix.patch, files/gamess-checktst.patch, metadata.xml: - Version bump. Fixed bugs #375803 #386839 - - 08 Oct 2011; Alexey Shvetsov gamess-20101001.3-r1.ebuild: - Fix patch name - -*gamess-20101001.3-r1 (06 Oct 2011) - - 06 Oct 2011; Alexey Shvetsov -gamess-20101001.3.ebuild, - +gamess-20101001.3-r1.ebuild, +files/gamess-checktst.patch: - Fix bug #379973. Thanks to Florian D. - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #105599 - - 21 Jun 2011; Justin Lecher gamess-20101001.3.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher gamess-20101001.3.ebuild: - Added fortran-2.eclass support - -*gamess-20101001.3 (17 Jun 2011) - - 17 Jun 2011; Alexey Shvetsov - -gamess-20101001.1-r1.ebuild, -files/gamess-20101001.1.gentoo.patch, - +gamess-20101001.3.ebuild, +files/gamess-20101001.3.gentoo.patch: - Version bump. Thanks to Wilhelm Eger - -*gamess-20101001.1-r1 (23 Jan 2011) - - 23 Jan 2011; Alexey Shvetsov -gamess-20101001.1.ebuild, - +gamess-20101001.1-r1.ebuild, +files/gamess-neo-fix.patch: - Fix neo build for gamess - - 29 Dec 2010; Alexey Shvetsov - -gamess-20090112.1-r1.ebuild, -files/gamess-20090112.1.gentoo.patch, - gamess-20101001.1.ebuild: - Fix gamess build. Aslo remove old versions since upstream provides only - latest tarball - - 20 Dec 2010; Justin Lecher gamess-20090112.1-r1.ebuild, - gamess-20101001.1.ebuild: - Fix for fortran detection, thanks alexxy noting this - - 16 Dec 2010; Justin Lecher gamess-20090112.1-r1.ebuild, - gamess-20101001.1.ebuild: - Removal of fortran.eclass, #348851 - - 08 Dec 2010; Alexey Shvetsov gamess-20101001.1.ebuild: - Fix neo code - - 07 Dec 2010; Alexey Shvetsov gamess-20101001.1.ebuild, - +files/gamess-qmmm-tinker-fix-idate.patch, metadata.xml: - Make neo optional also fix qmmm compilation - -*gamess-20101001.1 (07 Dec 2010) - - 07 Dec 2010; Alexey Shvetsov -gamess-20080411.1.ebuild, - -files/gamess-20080411.1.gentoo.patch, -gamess-20090112.1.ebuild, - -gamess-20090112.3.ebuild, -gamess-20090112.3-r1.ebuild, - -gamess-20100325.2.ebuild, -files/gamess-20100325.2.gentoo.patch, - +gamess-20101001.1.ebuild, +files/gamess-20101001.1.gentoo.patch: - Add new gamess release. Clean up old ones. TODO: Add cuda support and fix - broken mpi stuff - - 12 Aug 2010; Kacper Kowalik - gamess-20100325.2.ebuild: - Add missing depend on dev-util/pkgconfig wrt bug 332439. Thanks to Malcolm - Galland for reporting. - - 30 May 2010; Alexey Shvetsov gamess-20100325.2.ebuild, - +files/gamess-20100325.2.gentoo.patch: - make it build with new buildsystem - -*gamess-20100325.2 (24 May 2010) - - 24 May 2010; Alexey Shvetsov - +gamess-20100325.2.ebuild: - Version bump with improved qmmm stuff - - 30 Nov 2009; Alexey Shvetsov - gamess-20090112.3-r1.ebuild: - Fix typo - -*gamess-20090112.3-r1 (30 Nov 2009) - - 30 Nov 2009; Alexey Shvetsov - +gamess-20090112.3-r1.ebuild: - Enable mpi build for gamess-us - - 07 Nov 2009; Mounir Lamouri - gamess-20090112.1-r1.ebuild: - Stable on ppc, bug 268848 - -*gamess-20090112.3 (23 Oct 2009) - - 23 Oct 2009; Markus Dittrich - -gamess-20070324.1.ebuild, -files/gamess-20070324.1.gentoo.patch, - -gamess-20070324.3.ebuild, -files/gamess-20070324.3.gentoo.patch, - -gamess-20070324.6.ebuild, +gamess-20090112.3.ebuild: - Version bump and removed old ebuilds. - - 07 Jul 2009; Diego E. Pettenò - gamess-20090112.1-r1.ebuild: - Use elog for fetch error. - - 23 May 2009; Markus Meier gamess-20090112.1-r1.ebuild: - amd64 stable, bug #268848 - - 15 May 2009; Christian Faulhammer - gamess-20090112.1-r1.ebuild: - stable x86, bug 268848 - - 23 Apr 2009; Alexey Shvetsov gamess-20090112.1-r1: - Add support of adjusting MM size at build time - -*gamess-20090112.1-r1 (22 Apr 2009) - - 22 Apr 2009; Alexey Shvetsov metadata.xml, - +gamess-20090112.1-r1.ebuild: - Add QM/MM support to GAMESS-US - -*gamess-20090112.1 (20 Feb 2009) - - 20 Feb 2009; Alexey Shvetsov - +files/gamess-20090112.1.gentoo.patch, metadata.xml, - +gamess-20090112.1.ebuild: - Version bump (bug #258062). Add myself to metadata.xml - - 12 Oct 2008; Markus Dittrich - files/gamess-20080411.1.gentoo.patch: - Made slight change to rungms script to allow parallel runs via - environmental variables (see bug #241394). Thanks much to Alexey - Shvetsov for the suggestion. - - 29 Jun 2008; Torsten Veller gamess-20070324.1.ebuild, - gamess-20070324.3.ebuild, gamess-20070324.6.ebuild, - gamess-20080411.1.ebuild: - Add missing die: || "..." -> || die "..." - - 11 May 2008; Christian Faulhammer - gamess-20070324.1.ebuild: - revert stable KEYWORDS because the tarball is restricted and old ones won't - be available from upstream. Requested by markusle by mail - - 10 May 2008; Markus Dittrich - +gamess-20070324.1.ebuild: - Re-added accidentally removed stable version. - -*gamess-20080411.1 (08 May 2008) - - 08 May 2008; Markus Dittrich - -files/gamess-20060907.4.gentoo.patch, - -files/gamess-20070324.1.gentoo.patch, - +files/gamess-20080411.1.gentoo.patch, -gamess-20060907.4.ebuild, - -gamess-20070324.1.ebuild, +gamess-20080411.1.ebuild: - Version bump (fixes bug #220855). - -*gamess-20070324.6 (18 Mar 2008) - - 18 Mar 2008; Markus Dittrich - +gamess-20070324.6.ebuild: - Version bump. - -*gamess-20070324.3 (27 Oct 2007) - - 27 Oct 2007; Markus Dittrich - +files/gamess-20070324.3.gentoo.patch, +gamess-20070324.3.ebuild: - Version bump and keyworded gamess for amd64. - An external blas library is now mandatory. - - 19 Aug 2007; Markus Dittrich - gamess-20070324.1.ebuild: - Fixed bad RDEPEND. - - 03 Jul 2007; Christian Faulhammer - gamess-20070324.1.ebuild: - stable x86, bug 183881 - -*gamess-20070324.1 (17 Apr 2007) - - 17 Apr 2007; Markus Dittrich - -files/gamess-glibc-2.4-gentoo.patch, -files/comp-lked-20060222.2.patch, - -files/rungms-runall-20060222.2.patch, - -files/gamess-20060222.5.gentoo.patch, - +files/gamess-20070324.1.gentoo.patch, -files/ddi-use-ssh-gentoo.patch, - +gamess-20070324.1.ebuild: - Version bump and cleaned up unused patches. - - 07 Jan 2007; Danny van Dyk - -gamess-20060222.2.ebuild, -gamess-20060222.5.ebuild: - QA: Removed unused versions. - -*gamess-20060907.4 (14 Dec 2006) - - 14 Dec 2006; Markus Dittrich - +files/gamess-20060907.4.gentoo.patch, +gamess-20060907.4.ebuild: - Version bump. This version includes the NEO code. - -*gamess-20060222.5 (26 Sep 2006) - - 26 Sep 2006; Markus Dittrich - +files/gamess-20060222.5.gentoo.patch, -files/comp-gentoo.patch, - -files/compall-gentoo.patch, -files/compddi-gentoo.patch, - -files/lked-gentoo.patch, -files/runall-gentoo.1.patch, - -files/rungms-gentoo.1.patch, -gamess-05272005.5.ebuild, - +gamess-20060222.5.ebuild: - Version bump (see bug #149118). Also removed one old ebuild and - its accompanying files. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 30 Jun 2006; Markus Dittrich - gamess-20060222.2.ebuild: - Changed the ebuild to provide the test scripts used to validate - the gamess test runs. This fixes bug #138516. - - 23 Jun 2006; Markus Dittrich - gamess-20060222.2.ebuild: - Disable linking against external blas when compiling with ifc and - print out a warning. - - 23 May 2006; Markus Dittrich - gamess-20060222.2.ebuild: - Removed ifc use flag and replaced it with fortran.eclass logic. - - 14 May 2006; Donnie Berkholz ; - gamess-05272005.5.ebuild, gamess-20060222.2.ebuild: - Convert leading spaces to tabs. - - 14 May 2006; Donnie Berkholz ; - gamess-20060222.2.ebuild: - Keyword ~ppc. Also make sure to strip -malign-double on non-x86 systems. - - 28 Mar 2006; Markus Dittrich - +files/gamess-glibc-2.4-gentoo.patch, gamess-20060222.2.ebuild: - Added patch to fix missing CLK_TCK with glibc-2.4. Thanks to - Jaroslaw Kalinowski for pointing this out. This - fixes bug #127784. - -*gamess-20060222.2 (22 Mar 2006) - - 22 Mar 2006; Markus Dittrich - +files/comp-lked-20060222.2.patch, +files/rungms-runall-20060222.2.patch, - -files/comp-gentoo.1.patch, -files/runall-gentoo.patch, - -files/rungms-gentoo.patch, -gamess-05272005.3.ebuild, - -gamess-05272005.3-r1.ebuild, -gamess-05272005.3-r2.ebuild, - +gamess-20060222.2.ebuild: - Version bump and changed the ebuild naming convention to start with - the year since otherwise portage can't properly keep track of - updates. Also removed obsolete ebuilds/patches. gcc-4.1 currently - generates bad binaries even with very conservative compile flags. - - 08 Feb 2006; Markus Dittrich - gamess-05272005.5.ebuild: - Made ebuild ready to compile and run properly using gfortran. - - 23 Jan 2006; Markus Dittrich - files/digest-gamess-05272005.5, Manifest: - Fixed improper digest. This resolves bug #119994. - -*gamess-05272005.5 (20 Jan 2006) - - 20 Jan 2006; Markus Dittrich - +gamess-05272005.5.ebuild: - Bump to latest revision 27 JUN 2005 (R5). - -*gamess-05272005.3-r2 (07 Dec 2005) - - 07 Dec 2005; Markus Dittrich - +files/comp-gentoo.1.patch, +gamess-05272005.3-r2.ebuild: - This revision has the TDHF code enabled, which should now work properly with - the patched g77 (see bug #114367). - -*gamess-05272005.3-r1 (04 Dec 2005) - - 04 Dec 2005; Markus Dittrich - +files/runall-gentoo.1.patch, +files/rungms-gentoo.1.patch, - +gamess-05272005.3-r1.ebuild: - This new revision installs the rungms wrapper into /usr/bin to avoid that - users have to copy it manually and to play well with WebMO. - -*gamess-05272005.3 (03 Dec 2005) - - 03 Dec 2005; Markus Dittrich - files/rungms-gentoo.patch, -gamess-05272005.ebuild, - +gamess-05272005.3.ebuild: - Bumped GAMESS to most recent version and changed ebuild naming to properly - reflect the revision number; this fixes bug #114278. Removed old ebuild. - - 08 Nov 2005; Markus Dittrich ChangeLog: - marked gamess-05272005.ebuild as ~x86 - -*gamess-05272005 (20 Sep 2005) - - 20 Sep 2005; Olivier Fisette - +files/comp-gentoo.patch, +files/compall-gentoo.patch, - +files/compddi-gentoo.patch, +files/ddi-use-ssh-gentoo.patch, - +files/lked-gentoo.patch, +files/runall-gentoo.patch, - +files/rungms-gentoo.patch, +metadata.xml, +gamess-05272005.ebuild: - Initial import (fixes bug #105901). Package masked to allow for some - testing. Many thanks to Markus Dittrich for his ebuild - and patches. - diff --git a/sci-chemistry/gamess/ChangeLog-2015 b/sci-chemistry/gamess/ChangeLog-2015 new file mode 100644 index 00000000..0efcf005 --- /dev/null +++ b/sci-chemistry/gamess/ChangeLog-2015 @@ -0,0 +1,326 @@ +# ChangeLog for sci-chemistry/gamess +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamess/ChangeLog,v 1.59 2013/02/27 16:50:41 jlec Exp $ + + 27 Feb 2013; Justin Lecher gamess-20110811.1.ebuild, + files/gamess-20110811.1.gentoo.patch, metadata.xml: + Use PKG_CONFIG instead of generic pkg-config + + 19 Oct 2012; Justin Lecher gamess-20110811.1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 04 May 2012; Jeff Horelick gamess-20110811.1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*gamess-20110811.1 (13 Oct 2011) + + 13 Oct 2011; Alexey Shvetsov + -gamess-20101001.3-r1.ebuild, -files/gamess-20101001.3.gentoo.patch, + +gamess-20110811.1.ebuild, +files/gamess-20110811.1.gentoo.patch, + -files/gamess-neo-fix.patch, files/gamess-checktst.patch, metadata.xml: + Version bump. Fixed bugs #375803 #386839 + + 08 Oct 2011; Alexey Shvetsov gamess-20101001.3-r1.ebuild: + Fix patch name + +*gamess-20101001.3-r1 (06 Oct 2011) + + 06 Oct 2011; Alexey Shvetsov -gamess-20101001.3.ebuild, + +gamess-20101001.3-r1.ebuild, +files/gamess-checktst.patch: + Fix bug #379973. Thanks to Florian D. + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #105599 + + 21 Jun 2011; Justin Lecher gamess-20101001.3.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher gamess-20101001.3.ebuild: + Added fortran-2.eclass support + +*gamess-20101001.3 (17 Jun 2011) + + 17 Jun 2011; Alexey Shvetsov + -gamess-20101001.1-r1.ebuild, -files/gamess-20101001.1.gentoo.patch, + +gamess-20101001.3.ebuild, +files/gamess-20101001.3.gentoo.patch: + Version bump. Thanks to Wilhelm Eger + +*gamess-20101001.1-r1 (23 Jan 2011) + + 23 Jan 2011; Alexey Shvetsov -gamess-20101001.1.ebuild, + +gamess-20101001.1-r1.ebuild, +files/gamess-neo-fix.patch: + Fix neo build for gamess + + 29 Dec 2010; Alexey Shvetsov + -gamess-20090112.1-r1.ebuild, -files/gamess-20090112.1.gentoo.patch, + gamess-20101001.1.ebuild: + Fix gamess build. Aslo remove old versions since upstream provides only + latest tarball + + 20 Dec 2010; Justin Lecher gamess-20090112.1-r1.ebuild, + gamess-20101001.1.ebuild: + Fix for fortran detection, thanks alexxy noting this + + 16 Dec 2010; Justin Lecher gamess-20090112.1-r1.ebuild, + gamess-20101001.1.ebuild: + Removal of fortran.eclass, #348851 + + 08 Dec 2010; Alexey Shvetsov gamess-20101001.1.ebuild: + Fix neo code + + 07 Dec 2010; Alexey Shvetsov gamess-20101001.1.ebuild, + +files/gamess-qmmm-tinker-fix-idate.patch, metadata.xml: + Make neo optional also fix qmmm compilation + +*gamess-20101001.1 (07 Dec 2010) + + 07 Dec 2010; Alexey Shvetsov -gamess-20080411.1.ebuild, + -files/gamess-20080411.1.gentoo.patch, -gamess-20090112.1.ebuild, + -gamess-20090112.3.ebuild, -gamess-20090112.3-r1.ebuild, + -gamess-20100325.2.ebuild, -files/gamess-20100325.2.gentoo.patch, + +gamess-20101001.1.ebuild, +files/gamess-20101001.1.gentoo.patch: + Add new gamess release. Clean up old ones. TODO: Add cuda support and fix + broken mpi stuff + + 12 Aug 2010; Kacper Kowalik + gamess-20100325.2.ebuild: + Add missing depend on dev-util/pkgconfig wrt bug 332439. Thanks to Malcolm + Galland for reporting. + + 30 May 2010; Alexey Shvetsov gamess-20100325.2.ebuild, + +files/gamess-20100325.2.gentoo.patch: + make it build with new buildsystem + +*gamess-20100325.2 (24 May 2010) + + 24 May 2010; Alexey Shvetsov + +gamess-20100325.2.ebuild: + Version bump with improved qmmm stuff + + 30 Nov 2009; Alexey Shvetsov + gamess-20090112.3-r1.ebuild: + Fix typo + +*gamess-20090112.3-r1 (30 Nov 2009) + + 30 Nov 2009; Alexey Shvetsov + +gamess-20090112.3-r1.ebuild: + Enable mpi build for gamess-us + + 07 Nov 2009; Mounir Lamouri + gamess-20090112.1-r1.ebuild: + Stable on ppc, bug 268848 + +*gamess-20090112.3 (23 Oct 2009) + + 23 Oct 2009; Markus Dittrich + -gamess-20070324.1.ebuild, -files/gamess-20070324.1.gentoo.patch, + -gamess-20070324.3.ebuild, -files/gamess-20070324.3.gentoo.patch, + -gamess-20070324.6.ebuild, +gamess-20090112.3.ebuild: + Version bump and removed old ebuilds. + + 07 Jul 2009; Diego E. Pettenò + gamess-20090112.1-r1.ebuild: + Use elog for fetch error. + + 23 May 2009; Markus Meier gamess-20090112.1-r1.ebuild: + amd64 stable, bug #268848 + + 15 May 2009; Christian Faulhammer + gamess-20090112.1-r1.ebuild: + stable x86, bug 268848 + + 23 Apr 2009; Alexey Shvetsov gamess-20090112.1-r1: + Add support of adjusting MM size at build time + +*gamess-20090112.1-r1 (22 Apr 2009) + + 22 Apr 2009; Alexey Shvetsov metadata.xml, + +gamess-20090112.1-r1.ebuild: + Add QM/MM support to GAMESS-US + +*gamess-20090112.1 (20 Feb 2009) + + 20 Feb 2009; Alexey Shvetsov + +files/gamess-20090112.1.gentoo.patch, metadata.xml, + +gamess-20090112.1.ebuild: + Version bump (bug #258062). Add myself to metadata.xml + + 12 Oct 2008; Markus Dittrich + files/gamess-20080411.1.gentoo.patch: + Made slight change to rungms script to allow parallel runs via + environmental variables (see bug #241394). Thanks much to Alexey + Shvetsov for the suggestion. + + 29 Jun 2008; Torsten Veller gamess-20070324.1.ebuild, + gamess-20070324.3.ebuild, gamess-20070324.6.ebuild, + gamess-20080411.1.ebuild: + Add missing die: || "..." -> || die "..." + + 11 May 2008; Christian Faulhammer + gamess-20070324.1.ebuild: + revert stable KEYWORDS because the tarball is restricted and old ones won't + be available from upstream. Requested by markusle by mail + + 10 May 2008; Markus Dittrich + +gamess-20070324.1.ebuild: + Re-added accidentally removed stable version. + +*gamess-20080411.1 (08 May 2008) + + 08 May 2008; Markus Dittrich + -files/gamess-20060907.4.gentoo.patch, + -files/gamess-20070324.1.gentoo.patch, + +files/gamess-20080411.1.gentoo.patch, -gamess-20060907.4.ebuild, + -gamess-20070324.1.ebuild, +gamess-20080411.1.ebuild: + Version bump (fixes bug #220855). + +*gamess-20070324.6 (18 Mar 2008) + + 18 Mar 2008; Markus Dittrich + +gamess-20070324.6.ebuild: + Version bump. + +*gamess-20070324.3 (27 Oct 2007) + + 27 Oct 2007; Markus Dittrich + +files/gamess-20070324.3.gentoo.patch, +gamess-20070324.3.ebuild: + Version bump and keyworded gamess for amd64. + An external blas library is now mandatory. + + 19 Aug 2007; Markus Dittrich + gamess-20070324.1.ebuild: + Fixed bad RDEPEND. + + 03 Jul 2007; Christian Faulhammer + gamess-20070324.1.ebuild: + stable x86, bug 183881 + +*gamess-20070324.1 (17 Apr 2007) + + 17 Apr 2007; Markus Dittrich + -files/gamess-glibc-2.4-gentoo.patch, -files/comp-lked-20060222.2.patch, + -files/rungms-runall-20060222.2.patch, + -files/gamess-20060222.5.gentoo.patch, + +files/gamess-20070324.1.gentoo.patch, -files/ddi-use-ssh-gentoo.patch, + +gamess-20070324.1.ebuild: + Version bump and cleaned up unused patches. + + 07 Jan 2007; Danny van Dyk + -gamess-20060222.2.ebuild, -gamess-20060222.5.ebuild: + QA: Removed unused versions. + +*gamess-20060907.4 (14 Dec 2006) + + 14 Dec 2006; Markus Dittrich + +files/gamess-20060907.4.gentoo.patch, +gamess-20060907.4.ebuild: + Version bump. This version includes the NEO code. + +*gamess-20060222.5 (26 Sep 2006) + + 26 Sep 2006; Markus Dittrich + +files/gamess-20060222.5.gentoo.patch, -files/comp-gentoo.patch, + -files/compall-gentoo.patch, -files/compddi-gentoo.patch, + -files/lked-gentoo.patch, -files/runall-gentoo.1.patch, + -files/rungms-gentoo.1.patch, -gamess-05272005.5.ebuild, + +gamess-20060222.5.ebuild: + Version bump (see bug #149118). Also removed one old ebuild and + its accompanying files. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 30 Jun 2006; Markus Dittrich + gamess-20060222.2.ebuild: + Changed the ebuild to provide the test scripts used to validate + the gamess test runs. This fixes bug #138516. + + 23 Jun 2006; Markus Dittrich + gamess-20060222.2.ebuild: + Disable linking against external blas when compiling with ifc and + print out a warning. + + 23 May 2006; Markus Dittrich + gamess-20060222.2.ebuild: + Removed ifc use flag and replaced it with fortran.eclass logic. + + 14 May 2006; Donnie Berkholz ; + gamess-05272005.5.ebuild, gamess-20060222.2.ebuild: + Convert leading spaces to tabs. + + 14 May 2006; Donnie Berkholz ; + gamess-20060222.2.ebuild: + Keyword ~ppc. Also make sure to strip -malign-double on non-x86 systems. + + 28 Mar 2006; Markus Dittrich + +files/gamess-glibc-2.4-gentoo.patch, gamess-20060222.2.ebuild: + Added patch to fix missing CLK_TCK with glibc-2.4. Thanks to + Jaroslaw Kalinowski for pointing this out. This + fixes bug #127784. + +*gamess-20060222.2 (22 Mar 2006) + + 22 Mar 2006; Markus Dittrich + +files/comp-lked-20060222.2.patch, +files/rungms-runall-20060222.2.patch, + -files/comp-gentoo.1.patch, -files/runall-gentoo.patch, + -files/rungms-gentoo.patch, -gamess-05272005.3.ebuild, + -gamess-05272005.3-r1.ebuild, -gamess-05272005.3-r2.ebuild, + +gamess-20060222.2.ebuild: + Version bump and changed the ebuild naming convention to start with + the year since otherwise portage can't properly keep track of + updates. Also removed obsolete ebuilds/patches. gcc-4.1 currently + generates bad binaries even with very conservative compile flags. + + 08 Feb 2006; Markus Dittrich + gamess-05272005.5.ebuild: + Made ebuild ready to compile and run properly using gfortran. + + 23 Jan 2006; Markus Dittrich + files/digest-gamess-05272005.5, Manifest: + Fixed improper digest. This resolves bug #119994. + +*gamess-05272005.5 (20 Jan 2006) + + 20 Jan 2006; Markus Dittrich + +gamess-05272005.5.ebuild: + Bump to latest revision 27 JUN 2005 (R5). + +*gamess-05272005.3-r2 (07 Dec 2005) + + 07 Dec 2005; Markus Dittrich + +files/comp-gentoo.1.patch, +gamess-05272005.3-r2.ebuild: + This revision has the TDHF code enabled, which should now work properly with + the patched g77 (see bug #114367). + +*gamess-05272005.3-r1 (04 Dec 2005) + + 04 Dec 2005; Markus Dittrich + +files/runall-gentoo.1.patch, +files/rungms-gentoo.1.patch, + +gamess-05272005.3-r1.ebuild: + This new revision installs the rungms wrapper into /usr/bin to avoid that + users have to copy it manually and to play well with WebMO. + +*gamess-05272005.3 (03 Dec 2005) + + 03 Dec 2005; Markus Dittrich + files/rungms-gentoo.patch, -gamess-05272005.ebuild, + +gamess-05272005.3.ebuild: + Bumped GAMESS to most recent version and changed ebuild naming to properly + reflect the revision number; this fixes bug #114278. Removed old ebuild. + + 08 Nov 2005; Markus Dittrich ChangeLog: + marked gamess-05272005.ebuild as ~x86 + +*gamess-05272005 (20 Sep 2005) + + 20 Sep 2005; Olivier Fisette + +files/comp-gentoo.patch, +files/compall-gentoo.patch, + +files/compddi-gentoo.patch, +files/ddi-use-ssh-gentoo.patch, + +files/lked-gentoo.patch, +files/runall-gentoo.patch, + +files/rungms-gentoo.patch, +metadata.xml, +gamess-05272005.ebuild: + Initial import (fixes bug #105901). Package masked to allow for some + testing. Many thanks to Markus Dittrich for his ebuild + and patches. + diff --git a/sci-chemistry/gamessq/ChangeLog b/sci-chemistry/gamessq/ChangeLog deleted file mode 100644 index de4a44c8..00000000 --- a/sci-chemistry/gamessq/ChangeLog +++ /dev/null @@ -1,14 +0,0 @@ -# ChangeLog for sci-chemistry/gamessq -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamessq/ChangeLog,v 1.2 2014/01/06 15:03:59 jlec Exp $ - - 06 Jan 2014; Justin Lecher gamessq-1.2.ebuild, - metadata.xml: - Punt base.eclass - -*gamessq-1.2 (06 Dec 2010) - - 06 Dec 2010; Alexey Shvetsov +gamessq-1.2.ebuild, - +metadata.xml: - Initial import per bug #292979 - diff --git a/sci-chemistry/gamessq/ChangeLog-2015 b/sci-chemistry/gamessq/ChangeLog-2015 new file mode 100644 index 00000000..de4a44c8 --- /dev/null +++ b/sci-chemistry/gamessq/ChangeLog-2015 @@ -0,0 +1,14 @@ +# ChangeLog for sci-chemistry/gamessq +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gamessq/ChangeLog,v 1.2 2014/01/06 15:03:59 jlec Exp $ + + 06 Jan 2014; Justin Lecher gamessq-1.2.ebuild, + metadata.xml: + Punt base.eclass + +*gamessq-1.2 (06 Dec 2010) + + 06 Dec 2010; Alexey Shvetsov +gamessq-1.2.ebuild, + +metadata.xml: + Initial import per bug #292979 + diff --git a/sci-chemistry/gelemental/ChangeLog b/sci-chemistry/gelemental/ChangeLog deleted file mode 100644 index 5f48f621..00000000 --- a/sci-chemistry/gelemental/ChangeLog +++ /dev/null @@ -1,44 +0,0 @@ -# ChangeLog for sci-chemistry/gelemental -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gelemental/ChangeLog,v 1.11 2012/07/31 06:54:41 jlec Exp $ - -*gelemental-1.2.0-r1 (31 Jul 2012) - - 31 Jul 2012; Justin Lecher +gelemental-1.2.0-r1.ebuild: - Apply all debian patches - - 31 Jul 2012; Justin Lecher gelemental-1.2.0.ebuild, - +files/gelemental-1.2.0-doxygen.patch: - Import patch from debian fixing an doxygen issue; build in source, bcause - doxygen is broken otherwise, #428684 - - 01 Jul 2012; Justin Lecher gelemental-1.2.0.ebuild, - +files/gelemental-1.2.0-glib-2.32.patch: - Fix for compilation against glib-2.32, #423621; bumped to EAPI=4 and - autotools-utils; handle statc-libs - - 04 May 2012; Jeff Horelick gelemental-1.2.0.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 02 Mar 2011; Justin Lecher gelemental-1.2.0.ebuild: - Correct Slots for gtk 3 introduction to tree - - 30 Oct 2009; Markus Meier gelemental-1.2.0.ebuild: - amd64/x86 stable, bug #264393 - - 24 Nov 2008; Samuli Suominen metadata.xml: - Re-assign to sci-chemistry herd. - - 19 Oct 2008; Markus Dittrich - +files/gelemental-1.2.0-gcc4.3.patch, gelemental-1.2.0.ebuild: - Fixed gcc-4.3 issues (see bug #239567). Thanks much to David Sveningsson - for the patch. - - 10 Apr 2008; Dawid Węgliński gelemental-1.2.0.ebuild: - Add ~x86 love (bug #217013) - -*gelemental-1.2.0 (20 Mar 2008) - - 20 Mar 2008; Samuli Suominen +gelemental-1.2.0.ebuild: - Initial commit for bug 175014, thanks to Kristian Poul Herkild. - diff --git a/sci-chemistry/gelemental/ChangeLog-2015 b/sci-chemistry/gelemental/ChangeLog-2015 new file mode 100644 index 00000000..5f48f621 --- /dev/null +++ b/sci-chemistry/gelemental/ChangeLog-2015 @@ -0,0 +1,44 @@ +# ChangeLog for sci-chemistry/gelemental +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gelemental/ChangeLog,v 1.11 2012/07/31 06:54:41 jlec Exp $ + +*gelemental-1.2.0-r1 (31 Jul 2012) + + 31 Jul 2012; Justin Lecher +gelemental-1.2.0-r1.ebuild: + Apply all debian patches + + 31 Jul 2012; Justin Lecher gelemental-1.2.0.ebuild, + +files/gelemental-1.2.0-doxygen.patch: + Import patch from debian fixing an doxygen issue; build in source, bcause + doxygen is broken otherwise, #428684 + + 01 Jul 2012; Justin Lecher gelemental-1.2.0.ebuild, + +files/gelemental-1.2.0-glib-2.32.patch: + Fix for compilation against glib-2.32, #423621; bumped to EAPI=4 and + autotools-utils; handle statc-libs + + 04 May 2012; Jeff Horelick gelemental-1.2.0.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 02 Mar 2011; Justin Lecher gelemental-1.2.0.ebuild: + Correct Slots for gtk 3 introduction to tree + + 30 Oct 2009; Markus Meier gelemental-1.2.0.ebuild: + amd64/x86 stable, bug #264393 + + 24 Nov 2008; Samuli Suominen metadata.xml: + Re-assign to sci-chemistry herd. + + 19 Oct 2008; Markus Dittrich + +files/gelemental-1.2.0-gcc4.3.patch, gelemental-1.2.0.ebuild: + Fixed gcc-4.3 issues (see bug #239567). Thanks much to David Sveningsson + for the patch. + + 10 Apr 2008; Dawid Węgliński gelemental-1.2.0.ebuild: + Add ~x86 love (bug #217013) + +*gelemental-1.2.0 (20 Mar 2008) + + 20 Mar 2008; Samuli Suominen +gelemental-1.2.0.ebuild: + Initial commit for bug 175014, thanks to Kristian Poul Herkild. + diff --git a/sci-chemistry/ghemical/ChangeLog b/sci-chemistry/ghemical/ChangeLog deleted file mode 100644 index d5f7457f..00000000 --- a/sci-chemistry/ghemical/ChangeLog +++ /dev/null @@ -1,204 +0,0 @@ -# ChangeLog for sci-chemistry/ghemical -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ghemical/ChangeLog,v 1.42 2014/07/10 01:33:20 patrick Exp $ - - 10 Jul 2014; Patrick Lauer metadata.xml: - Remove unneeded useflag description from metadata.xml - - 09 Jul 2014; Andreas K. Huettel -ghemical-2.01.ebuild: - Remove old - -*ghemical-3.0.0 (02 Feb 2013) - - 02 Feb 2013; Patrick Lauer +ghemical-3.0.0.ebuild: - Bump - - 04 May 2012; Jeff Horelick ghemical-2.01.ebuild, - ghemical-2.99.2-r2.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 28 May 2011; Brent Baude ghemical-2.99.2-r2.ebuild: - Marking ghemical-2.99.2-r2 ppc for bug 325561 - - 02 Mar 2011; Justin Lecher ghemical-2.01.ebuild, - ghemical-2.99.2-r2.ebuild: - Correct Slots for gtk 3 introduction to tree - - 10 Oct 2010; Markos Chandras - ghemical-2.99.2-r2.ebuild: - Stable on amd64 wrt bug #325561 - - 16 Sep 2010; Tomáš Chvátal ghemical-2.01.ebuild: - virtual/glut -> media-libs/glut - - 06 Sep 2010; Christian Faulhammer - ghemical-2.99.2-r2.ebuild: - stable x86, bug 325561 - - 25 Jun 2010; Justin Lecher ghemical-2.99.2-r2.ebuild: - Renamed desktop entry to Ghemical - -*ghemical-2.99.2-r2 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher -ghemical-2.99.2-r1.ebuild, - +ghemical-2.99.2-r2.ebuild: - Make destop entry, 324979 - -*ghemical-2.99.2-r1 (23 Jun 2010) - - 23 Jun 2010; Justin Lecher files/2.99.2-docs.patch, - -ghemical-2.99.2.ebuild, +ghemical-2.99.2-r1.ebuild: - Fixed typo in docs patch - -*ghemical-2.99.2 (21 Jun 2010) - - 21 Jun 2010; Justin Lecher +files/2.99.2-docs.patch, - -ghemical-2.10.ebuild, -ghemical-2.95.ebuild, -ghemical-2.98.ebuild, - +ghemical-2.99.2.ebuild: - Version Bump, fixing bug 212689, 232292, 246414, thanks rei4dan for working - on patches, Cleaned old buggy versions, Fixed wrong path for html installation - - 23 Feb 2009; Joseph Jezak ghemical-2.10.ebuild, - ghemical-2.98.ebuild: - Marked ~ppc for bug #211786. - - 30 Nov 2008; Jeff Gardner +files/ghemical-gcc43.patch, - ghemical-2.98.ebuild: - Incorporating gcc4.3 fixes - -*ghemical-2.98 (27 Nov 2008) - - 27 Nov 2008; Patrick Lauer +ghemical-2.98.ebuild: - Bump to 2.98 - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - -*ghemical-2.95 (08 Jul 2008) - - 08 Jul 2008; Donnie Berkholz ; - +ghemical-2.95.ebuild: - Bump. Upstream dropped gamess support and the toolbar. (#226915) No more - need for append-ldflags. - - 22 Jul 2007; Donnie Berkholz ; ghemical-2.01.ebuild: - Drop virtual/x11 references. - - 18 Jan 2007; Jeff Gardner ChangeLog: - Bump to ghemical-2.10 - - 21 Dec 2006; Saleem Abdulrasool -files/gcc3.4.patch, - -files/gcc3.4-r1.patch, -ghemical-1.00.ebuild, -ghemical-1.01.ebuild, - -ghemical-1.02.ebuild: - gnome-1.x removal - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 09 Jul 2006; Donnie Berkholz ; ghemical-2.01.ebuild: - x86/ppc stable. - - 17 Jun 2006; Donnie Berkholz ; metadata.xml, - ghemical-1.00.ebuild, ghemical-1.01.ebuild, ghemical-1.02.ebuild, - ghemical-2.01.ebuild: - (#136391) Move long description into metadata. - - 14 May 2006; Donnie Berkholz ; ghemical-1.00.ebuild, - ghemical-1.01.ebuild, ghemical-1.02.ebuild, ghemical-2.01.ebuild: - (#133254) New homepage. - - 13 May 2006; Donnie Berkholz ; - -files/ghemical-1.90-ghemical-server-fix.patch, - -files/1.90-gcc3.4-r1.patch, - -files/ghemical-1.91-ghemical-server-fix.patch, - -files/1.91-gcc3.4-r1.patch, -ghemical-1.90.ebuild, -ghemical-1.91.ebuild: - Pull old development versions. - -*ghemical-2.01 (13 May 2006) - - 13 May 2006; Donnie Berkholz ; - +ghemical-2.01.ebuild: - (#132835) Bump to latest release. Ebuild based on work of Donald E. Curtis. - - 13 May 2006; Donnie Berkholz ; ghemical-1.02.ebuild: - Update openbabel dep for adding openbabel-2 to the tree. - -*ghemical-1.91 (06 Dec 2005) - - 06 Dec 2005; Donnie Berkholz ; - +files/ghemical-1.91-ghemical-server-fix.patch, - +files/1.91-gcc3.4-r1.patch, +ghemical-1.91.ebuild: - Bump. Remove faulty libf2c dep; Add modular X deps. - - 02 Dec 2005; Donnie Berkholz ; ghemical-1.90.ebuild: - libghemical moved from sci-chemistry to sci-libs. - - 09 Jul 2005; David Holm ghemical-1.90.ebuild: - Added to ~ppc. - - 09 Jul 2005; Donnie Berkholz ; ghemical-1.02.ebuild: - Fix die messages. - -*ghemical-1.90 (09 Jul 2005) - - 09 Jul 2005; Donnie Berkholz ; - +files/ghemical-1.90-ghemical-server-fix.patch, - +files/1.90-gcc3.4-r1.patch, +ghemical-1.90.ebuild: - Development version. - - 09 Jul 2005; Donnie Berkholz ; ghemical-1.02.ebuild: - We can use virtual/glut here, no need to get tied into media-libs/glut. - -*ghemical-1.02 (09 Jul 2005) - - 09 Jul 2005; Donnie Berkholz ; - +ghemical-1.02.ebuild: - Version bump. Now uses external mopac7 and openbabel instead of including - its own copies. Added USE flags for mpqc and for GTK+ front-end instead of - GLUT front-end. - -*ghemical-1.01 (04 Jan 2005) - - 04 Jan 2005; Patrick Kursawe +files/gcc3.4-r1.patch, - +ghemical-1.01.ebuild: - Version bump - - 04 Jan 2005; Patrick Kursawe +files/gcc3.4.patch, - ghemical-1.00.ebuild: - Gets through gcc 3.4.3 now - solving bug #74976. - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +ghemical-1.00.ebuild: - Moved from app-sci/ghemical to sci-chemistry/ghemical. - - 19 Apr 2004; Patrick Kursawe ghemical-0.90.ebuild, - ghemical-1.00.ebuild, files/ghemical-0.90-gentoo.patch: - Added IUSE, moved to sed -i - -*ghemical-1.00 (13 Feb 2003) - - 13 Jan 2003; foser ghemical-1.00.ebuild : - Corrected deps, removed gtkglext dep. - - 12 Jan 2003; Matthew Turk : - Fix stupid typos. - - 03 Jan 2003; Matthew Turk : - Clean up some more depends. - - 30 Dec 2002; Matthew Turk : - Fixed #10784 by adding gtkglext as DEPEND. - - 05 Dec 2002; Hannes Mehnert ghemical-1.00.ebuild: - version bump - - 02 Nov 2002; Hannes Mehnert ghemical-0.90.ebuild: - marked stable for x86 - - 31 Oct 2002; Hannes Mehnert ghemical-0.90.ebuild: - added --enable-mpqc (since mpqc is now in portage) - -*ghemical-0.90.ebuild (28 Oct 2002) - - 28 Oct 2002; Hannes Mehnert ghemical-0.90.ebuild, - ChangeLog: Initial ebuild. diff --git a/sci-chemistry/ghemical/ChangeLog-2015 b/sci-chemistry/ghemical/ChangeLog-2015 new file mode 100644 index 00000000..d5f7457f --- /dev/null +++ b/sci-chemistry/ghemical/ChangeLog-2015 @@ -0,0 +1,204 @@ +# ChangeLog for sci-chemistry/ghemical +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ghemical/ChangeLog,v 1.42 2014/07/10 01:33:20 patrick Exp $ + + 10 Jul 2014; Patrick Lauer metadata.xml: + Remove unneeded useflag description from metadata.xml + + 09 Jul 2014; Andreas K. Huettel -ghemical-2.01.ebuild: + Remove old + +*ghemical-3.0.0 (02 Feb 2013) + + 02 Feb 2013; Patrick Lauer +ghemical-3.0.0.ebuild: + Bump + + 04 May 2012; Jeff Horelick ghemical-2.01.ebuild, + ghemical-2.99.2-r2.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 28 May 2011; Brent Baude ghemical-2.99.2-r2.ebuild: + Marking ghemical-2.99.2-r2 ppc for bug 325561 + + 02 Mar 2011; Justin Lecher ghemical-2.01.ebuild, + ghemical-2.99.2-r2.ebuild: + Correct Slots for gtk 3 introduction to tree + + 10 Oct 2010; Markos Chandras + ghemical-2.99.2-r2.ebuild: + Stable on amd64 wrt bug #325561 + + 16 Sep 2010; Tomáš Chvátal ghemical-2.01.ebuild: + virtual/glut -> media-libs/glut + + 06 Sep 2010; Christian Faulhammer + ghemical-2.99.2-r2.ebuild: + stable x86, bug 325561 + + 25 Jun 2010; Justin Lecher ghemical-2.99.2-r2.ebuild: + Renamed desktop entry to Ghemical + +*ghemical-2.99.2-r2 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher -ghemical-2.99.2-r1.ebuild, + +ghemical-2.99.2-r2.ebuild: + Make destop entry, 324979 + +*ghemical-2.99.2-r1 (23 Jun 2010) + + 23 Jun 2010; Justin Lecher files/2.99.2-docs.patch, + -ghemical-2.99.2.ebuild, +ghemical-2.99.2-r1.ebuild: + Fixed typo in docs patch + +*ghemical-2.99.2 (21 Jun 2010) + + 21 Jun 2010; Justin Lecher +files/2.99.2-docs.patch, + -ghemical-2.10.ebuild, -ghemical-2.95.ebuild, -ghemical-2.98.ebuild, + +ghemical-2.99.2.ebuild: + Version Bump, fixing bug 212689, 232292, 246414, thanks rei4dan for working + on patches, Cleaned old buggy versions, Fixed wrong path for html installation + + 23 Feb 2009; Joseph Jezak ghemical-2.10.ebuild, + ghemical-2.98.ebuild: + Marked ~ppc for bug #211786. + + 30 Nov 2008; Jeff Gardner +files/ghemical-gcc43.patch, + ghemical-2.98.ebuild: + Incorporating gcc4.3 fixes + +*ghemical-2.98 (27 Nov 2008) + + 27 Nov 2008; Patrick Lauer +ghemical-2.98.ebuild: + Bump to 2.98 + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + +*ghemical-2.95 (08 Jul 2008) + + 08 Jul 2008; Donnie Berkholz ; + +ghemical-2.95.ebuild: + Bump. Upstream dropped gamess support and the toolbar. (#226915) No more + need for append-ldflags. + + 22 Jul 2007; Donnie Berkholz ; ghemical-2.01.ebuild: + Drop virtual/x11 references. + + 18 Jan 2007; Jeff Gardner ChangeLog: + Bump to ghemical-2.10 + + 21 Dec 2006; Saleem Abdulrasool -files/gcc3.4.patch, + -files/gcc3.4-r1.patch, -ghemical-1.00.ebuild, -ghemical-1.01.ebuild, + -ghemical-1.02.ebuild: + gnome-1.x removal + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 09 Jul 2006; Donnie Berkholz ; ghemical-2.01.ebuild: + x86/ppc stable. + + 17 Jun 2006; Donnie Berkholz ; metadata.xml, + ghemical-1.00.ebuild, ghemical-1.01.ebuild, ghemical-1.02.ebuild, + ghemical-2.01.ebuild: + (#136391) Move long description into metadata. + + 14 May 2006; Donnie Berkholz ; ghemical-1.00.ebuild, + ghemical-1.01.ebuild, ghemical-1.02.ebuild, ghemical-2.01.ebuild: + (#133254) New homepage. + + 13 May 2006; Donnie Berkholz ; + -files/ghemical-1.90-ghemical-server-fix.patch, + -files/1.90-gcc3.4-r1.patch, + -files/ghemical-1.91-ghemical-server-fix.patch, + -files/1.91-gcc3.4-r1.patch, -ghemical-1.90.ebuild, -ghemical-1.91.ebuild: + Pull old development versions. + +*ghemical-2.01 (13 May 2006) + + 13 May 2006; Donnie Berkholz ; + +ghemical-2.01.ebuild: + (#132835) Bump to latest release. Ebuild based on work of Donald E. Curtis. + + 13 May 2006; Donnie Berkholz ; ghemical-1.02.ebuild: + Update openbabel dep for adding openbabel-2 to the tree. + +*ghemical-1.91 (06 Dec 2005) + + 06 Dec 2005; Donnie Berkholz ; + +files/ghemical-1.91-ghemical-server-fix.patch, + +files/1.91-gcc3.4-r1.patch, +ghemical-1.91.ebuild: + Bump. Remove faulty libf2c dep; Add modular X deps. + + 02 Dec 2005; Donnie Berkholz ; ghemical-1.90.ebuild: + libghemical moved from sci-chemistry to sci-libs. + + 09 Jul 2005; David Holm ghemical-1.90.ebuild: + Added to ~ppc. + + 09 Jul 2005; Donnie Berkholz ; ghemical-1.02.ebuild: + Fix die messages. + +*ghemical-1.90 (09 Jul 2005) + + 09 Jul 2005; Donnie Berkholz ; + +files/ghemical-1.90-ghemical-server-fix.patch, + +files/1.90-gcc3.4-r1.patch, +ghemical-1.90.ebuild: + Development version. + + 09 Jul 2005; Donnie Berkholz ; ghemical-1.02.ebuild: + We can use virtual/glut here, no need to get tied into media-libs/glut. + +*ghemical-1.02 (09 Jul 2005) + + 09 Jul 2005; Donnie Berkholz ; + +ghemical-1.02.ebuild: + Version bump. Now uses external mopac7 and openbabel instead of including + its own copies. Added USE flags for mpqc and for GTK+ front-end instead of + GLUT front-end. + +*ghemical-1.01 (04 Jan 2005) + + 04 Jan 2005; Patrick Kursawe +files/gcc3.4-r1.patch, + +ghemical-1.01.ebuild: + Version bump + + 04 Jan 2005; Patrick Kursawe +files/gcc3.4.patch, + ghemical-1.00.ebuild: + Gets through gcc 3.4.3 now - solving bug #74976. + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +ghemical-1.00.ebuild: + Moved from app-sci/ghemical to sci-chemistry/ghemical. + + 19 Apr 2004; Patrick Kursawe ghemical-0.90.ebuild, + ghemical-1.00.ebuild, files/ghemical-0.90-gentoo.patch: + Added IUSE, moved to sed -i + +*ghemical-1.00 (13 Feb 2003) + + 13 Jan 2003; foser ghemical-1.00.ebuild : + Corrected deps, removed gtkglext dep. + + 12 Jan 2003; Matthew Turk : + Fix stupid typos. + + 03 Jan 2003; Matthew Turk : + Clean up some more depends. + + 30 Dec 2002; Matthew Turk : + Fixed #10784 by adding gtkglext as DEPEND. + + 05 Dec 2002; Hannes Mehnert ghemical-1.00.ebuild: + version bump + + 02 Nov 2002; Hannes Mehnert ghemical-0.90.ebuild: + marked stable for x86 + + 31 Oct 2002; Hannes Mehnert ghemical-0.90.ebuild: + added --enable-mpqc (since mpqc is now in portage) + +*ghemical-0.90.ebuild (28 Oct 2002) + + 28 Oct 2002; Hannes Mehnert ghemical-0.90.ebuild, + ChangeLog: Initial ebuild. diff --git a/sci-chemistry/gopenmol/ChangeLog b/sci-chemistry/gopenmol/ChangeLog deleted file mode 100644 index 3f9ebffb..00000000 --- a/sci-chemistry/gopenmol/ChangeLog +++ /dev/null @@ -1,68 +0,0 @@ -# ChangeLog for sci-chemistry/gopenmol -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gopenmol/ChangeLog,v 1.14 2015/04/08 18:22:14 mgorny Exp $ - - 08 Apr 2015; Michał Górny gopenmol-3.00-r3.ebuild: - Drop old Python implementations - -*gopenmol-3.00-r3 (04 Jul 2013) - - 04 Jul 2013; Justin Lecher gopenmol-3.00-r2.ebuild, - +gopenmol-3.00-r3.ebuild, +files/3.00-impl-dec.patch, - +files/3.00-tcl8.6.patch, metadata.xml: - Bump to EAPI=5 and new python eclass, fix for tcl8.6; fix implicit - declarations; restrict license, #470782 - - 02 Apr 2012; Justin Lecher gopenmol-3.00-r2.ebuild, - metadata.xml: - Drop tk version restriction, move to EAPI=4 - - 08 Nov 2010; Kacper Kowalik - -gopenmol-3.00-r1.ebuild, gopenmol-3.00-r2.ebuild: - media-libs/jpeg -> virtual/jpeg. Drop old. - - 16 Sep 2010; Tomáš Chvátal - gopenmol-3.00-r1.ebuild, gopenmol-3.00-r2.ebuild: - virtual/glut -> media-libs/glut - -*gopenmol-3.00-r2 (20 May 2010) - - 20 May 2010; Justin Lecher +files/3.00-multilib.patch, - +gopenmol-3.00-r2.ebuild: - Python ABI fix #316173, keyworded for amd64, place things at the right - position, fix startup issue #249508 - - 22 Jul 2007; Donnie Berkholz ; - gopenmol-3.00-r1.ebuild: - Drop virtual/x11 references. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 07 Jan 2007; Danny van Dyk -gopenmol-3.00.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*gopenmol-3.00-r1 (21 Feb 2006) - - 21 Feb 2006; Donnie Berkholz ; - +gopenmol-3.00-r1.ebuild: - (#123573) Build and install utilities; fix by hodak@nemo.physics.ncsu.edu. - -*gopenmol-3.00 (03 Dec 2005) - - 03 Dec 2005; Donnie Berkholz ; - +files/3.00-include-config-for-plugins.patch, +metadata.xml, - +gopenmol-3.00.ebuild: - (#53333) New molecular graphics package for visualizing and analyzing - structures. Based on ebuild by Dirk-Jan Heijs , with - updates and fixes by me. diff --git a/sci-chemistry/gopenmol/ChangeLog-2015 b/sci-chemistry/gopenmol/ChangeLog-2015 new file mode 100644 index 00000000..3f9ebffb --- /dev/null +++ b/sci-chemistry/gopenmol/ChangeLog-2015 @@ -0,0 +1,68 @@ +# ChangeLog for sci-chemistry/gopenmol +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gopenmol/ChangeLog,v 1.14 2015/04/08 18:22:14 mgorny Exp $ + + 08 Apr 2015; Michał Górny gopenmol-3.00-r3.ebuild: + Drop old Python implementations + +*gopenmol-3.00-r3 (04 Jul 2013) + + 04 Jul 2013; Justin Lecher gopenmol-3.00-r2.ebuild, + +gopenmol-3.00-r3.ebuild, +files/3.00-impl-dec.patch, + +files/3.00-tcl8.6.patch, metadata.xml: + Bump to EAPI=5 and new python eclass, fix for tcl8.6; fix implicit + declarations; restrict license, #470782 + + 02 Apr 2012; Justin Lecher gopenmol-3.00-r2.ebuild, + metadata.xml: + Drop tk version restriction, move to EAPI=4 + + 08 Nov 2010; Kacper Kowalik + -gopenmol-3.00-r1.ebuild, gopenmol-3.00-r2.ebuild: + media-libs/jpeg -> virtual/jpeg. Drop old. + + 16 Sep 2010; Tomáš Chvátal + gopenmol-3.00-r1.ebuild, gopenmol-3.00-r2.ebuild: + virtual/glut -> media-libs/glut + +*gopenmol-3.00-r2 (20 May 2010) + + 20 May 2010; Justin Lecher +files/3.00-multilib.patch, + +gopenmol-3.00-r2.ebuild: + Python ABI fix #316173, keyworded for amd64, place things at the right + position, fix startup issue #249508 + + 22 Jul 2007; Donnie Berkholz ; + gopenmol-3.00-r1.ebuild: + Drop virtual/x11 references. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 07 Jan 2007; Danny van Dyk -gopenmol-3.00.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*gopenmol-3.00-r1 (21 Feb 2006) + + 21 Feb 2006; Donnie Berkholz ; + +gopenmol-3.00-r1.ebuild: + (#123573) Build and install utilities; fix by hodak@nemo.physics.ncsu.edu. + +*gopenmol-3.00 (03 Dec 2005) + + 03 Dec 2005; Donnie Berkholz ; + +files/3.00-include-config-for-plugins.patch, +metadata.xml, + +gopenmol-3.00.ebuild: + (#53333) New molecular graphics package for visualizing and analyzing + structures. Based on ebuild by Dirk-Jan Heijs , with + updates and fixes by me. diff --git a/sci-chemistry/gperiodic/ChangeLog b/sci-chemistry/gperiodic/ChangeLog deleted file mode 100644 index 432cf65a..00000000 --- a/sci-chemistry/gperiodic/ChangeLog +++ /dev/null @@ -1,117 +0,0 @@ -# ChangeLog for sci-chemistry/gperiodic -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gperiodic/ChangeLog,v 1.21 2012/09/05 07:03:30 jlec Exp $ - - 05 Sep 2012; Justin Lecher gperiodic-2.0.10.ebuild, - gperiodic-2.0.10-r2.ebuild: - Bump EAPI to 4; fix desktop file - - 04 May 2012; Jeff Horelick gperiodic-2.0.10.ebuild, - gperiodic-2.0.10-r2.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 26 Jan 2012; Justin Lecher gperiodic-2.0.10-r2.ebuild, - +files/gperiodic-2.0.10-nls.patch, metadata.xml: - Fix installation with USE=-nls, #395125 - - 13 Dec 2011; Agostino Sarubbo gperiodic-2.0.10-r2.ebuild: - Stable for AMD64, wrt bug #392791 - - 11 Dec 2011; Pawel Hajdan jr - gperiodic-2.0.10-r2.ebuild: - x86 stable wrt bug #392791 - - 20 Nov 2011; Pacho Ramos - files/gperiodic-2.0.10-makefile.patch: - Drop DEPRECATED flags, bug #391099 - - 02 Mar 2011; Justin Lecher gperiodic-2.0.10.ebuild: - Correct Slots for gtk 3 introduction to tree - -*gperiodic-2.0.10-r2 (23 Aug 2010) - - 23 Aug 2010; Kacper Kowalik - -gperiodic-2.0.7.ebuild, -gperiodic-2.0.10-r1.ebuild, - +gperiodic-2.0.10-r2.ebuild, +files/gperiodic-2.0.10-makefile.patch: - Simplify ebuild by patching Makefile, correct nls, fix parallel make. - Remove old version using built_with_use. - -*gperiodic-2.0.10-r1 (22 Aug 2010) - - 22 Aug 2010; Markos Chandras - +gperiodic-2.0.10-r1.ebuild: - Respect CC, LDFLAGS. Move sed commands to src_prepare. Bug #333849 - - 07 Oct 2009; Markus Meier gperiodic-2.0.10.ebuild: - amd64/x86 stable, bug #285466 - - 18 Sep 2009; Petteri Räty - gperiodic-2.0.10.ebuild: - Migrate to EAPI 2 in order to remove built_with_use usage. - - 02 Jan 2009; Marcus D. Hanwell metadata.xml: - Removed myself as maintainer. - - 16 Jun 2008; Markus Dittrich - -files/gperiodic-1.3.2-gentoo.diff: - Removed unused patch which triggered bug #Bug 226815. - - 29 May 2008; Markus Dittrich gperiodic-2.0.7.ebuild, - gperiodic-2.0.10.ebuild: - Fixed broken HOMEPAGE and SRC_URI. - -*gperiodic-2.0.10 (29 May 2008) - - 29 May 2008; Markus Dittrich gperiodic-2.0.7.ebuild, - +gperiodic-2.0.10.ebuild: - Version bump. Also fixed sed problems and added check for X useflag for - cairo (see bug #223875). - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 19 Aug 2005; Marcus D. Hanwell - -gperiodic-1.3.2.ebuild, gperiodic-2.0.7.ebuild: - Removed old version. Fixed typo in .desktop file, closes bug 97202. - - 04 Feb 2005; Marcus D. Hanwell metadata.xml, - gperiodic-2.0.7.ebuild: - Marked stable on amd64 and x86. Updated metadata.xml. - -*gperiodic-1.3.2 (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +files/gperiodic-1.3.2-gentoo.diff, +gperiodic-1.3.2.ebuild, - +gperiodic-2.0.7.ebuild: - Moved from app-sci/gperiodic to sci-chemistry/gperiodic. - -*gperiodic-2.0.7 (17 Nov 2004) - - 17 Nov 2004; Olivier Fisette +gperiodic-2.0.7.ebuild: - Updated version. Thanks to Marcus Hanwell for his work. - - 15 Jun 2004; Michael Sterrett gperiodic-1.3.2.ebuild: - PROVIDE is for virtuals - - 06 Jun 2004; Danny van Dyk gperiodic-1.3.2.ebuild: - Marked stable on amd64. - - 21 Apr 2004; Danny van Dyk gperiodic-1.3.2.ebuild: - marked ~amd64 - -*gperiodic-1.3.2 (1 Feb 2002) - - 25 Jul 2002; Daniel Ahlberg gperiodic-1.3.2.ebuild : - Added LICENSE, KEYWORDS, SLOT. - - 06 May 2002; G. Shapovalov Changelog: - - Moved from app-misc to app-sci - - 1 Feb 2002; G.Bevin ChangeLog : - - Added initial ChangeLog which should be updated whenever the package is - updated in any way. This changelog is targetted to users. This means that the - comments should well explained and written in clean English. The details about - writing correct changelogs are explained in the skel.ChangeLog file which you - can find in the root directory of the portage repository. diff --git a/sci-chemistry/gperiodic/ChangeLog-2015 b/sci-chemistry/gperiodic/ChangeLog-2015 new file mode 100644 index 00000000..432cf65a --- /dev/null +++ b/sci-chemistry/gperiodic/ChangeLog-2015 @@ -0,0 +1,117 @@ +# ChangeLog for sci-chemistry/gperiodic +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gperiodic/ChangeLog,v 1.21 2012/09/05 07:03:30 jlec Exp $ + + 05 Sep 2012; Justin Lecher gperiodic-2.0.10.ebuild, + gperiodic-2.0.10-r2.ebuild: + Bump EAPI to 4; fix desktop file + + 04 May 2012; Jeff Horelick gperiodic-2.0.10.ebuild, + gperiodic-2.0.10-r2.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 26 Jan 2012; Justin Lecher gperiodic-2.0.10-r2.ebuild, + +files/gperiodic-2.0.10-nls.patch, metadata.xml: + Fix installation with USE=-nls, #395125 + + 13 Dec 2011; Agostino Sarubbo gperiodic-2.0.10-r2.ebuild: + Stable for AMD64, wrt bug #392791 + + 11 Dec 2011; Pawel Hajdan jr + gperiodic-2.0.10-r2.ebuild: + x86 stable wrt bug #392791 + + 20 Nov 2011; Pacho Ramos + files/gperiodic-2.0.10-makefile.patch: + Drop DEPRECATED flags, bug #391099 + + 02 Mar 2011; Justin Lecher gperiodic-2.0.10.ebuild: + Correct Slots for gtk 3 introduction to tree + +*gperiodic-2.0.10-r2 (23 Aug 2010) + + 23 Aug 2010; Kacper Kowalik + -gperiodic-2.0.7.ebuild, -gperiodic-2.0.10-r1.ebuild, + +gperiodic-2.0.10-r2.ebuild, +files/gperiodic-2.0.10-makefile.patch: + Simplify ebuild by patching Makefile, correct nls, fix parallel make. + Remove old version using built_with_use. + +*gperiodic-2.0.10-r1 (22 Aug 2010) + + 22 Aug 2010; Markos Chandras + +gperiodic-2.0.10-r1.ebuild: + Respect CC, LDFLAGS. Move sed commands to src_prepare. Bug #333849 + + 07 Oct 2009; Markus Meier gperiodic-2.0.10.ebuild: + amd64/x86 stable, bug #285466 + + 18 Sep 2009; Petteri Räty + gperiodic-2.0.10.ebuild: + Migrate to EAPI 2 in order to remove built_with_use usage. + + 02 Jan 2009; Marcus D. Hanwell metadata.xml: + Removed myself as maintainer. + + 16 Jun 2008; Markus Dittrich + -files/gperiodic-1.3.2-gentoo.diff: + Removed unused patch which triggered bug #Bug 226815. + + 29 May 2008; Markus Dittrich gperiodic-2.0.7.ebuild, + gperiodic-2.0.10.ebuild: + Fixed broken HOMEPAGE and SRC_URI. + +*gperiodic-2.0.10 (29 May 2008) + + 29 May 2008; Markus Dittrich gperiodic-2.0.7.ebuild, + +gperiodic-2.0.10.ebuild: + Version bump. Also fixed sed problems and added check for X useflag for + cairo (see bug #223875). + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 19 Aug 2005; Marcus D. Hanwell + -gperiodic-1.3.2.ebuild, gperiodic-2.0.7.ebuild: + Removed old version. Fixed typo in .desktop file, closes bug 97202. + + 04 Feb 2005; Marcus D. Hanwell metadata.xml, + gperiodic-2.0.7.ebuild: + Marked stable on amd64 and x86. Updated metadata.xml. + +*gperiodic-1.3.2 (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +files/gperiodic-1.3.2-gentoo.diff, +gperiodic-1.3.2.ebuild, + +gperiodic-2.0.7.ebuild: + Moved from app-sci/gperiodic to sci-chemistry/gperiodic. + +*gperiodic-2.0.7 (17 Nov 2004) + + 17 Nov 2004; Olivier Fisette +gperiodic-2.0.7.ebuild: + Updated version. Thanks to Marcus Hanwell for his work. + + 15 Jun 2004; Michael Sterrett gperiodic-1.3.2.ebuild: + PROVIDE is for virtuals + + 06 Jun 2004; Danny van Dyk gperiodic-1.3.2.ebuild: + Marked stable on amd64. + + 21 Apr 2004; Danny van Dyk gperiodic-1.3.2.ebuild: + marked ~amd64 + +*gperiodic-1.3.2 (1 Feb 2002) + + 25 Jul 2002; Daniel Ahlberg gperiodic-1.3.2.ebuild : + Added LICENSE, KEYWORDS, SLOT. + + 06 May 2002; G. Shapovalov Changelog: + + Moved from app-misc to app-sci + + 1 Feb 2002; G.Bevin ChangeLog : + + Added initial ChangeLog which should be updated whenever the package is + updated in any way. This changelog is targetted to users. This means that the + comments should well explained and written in clean English. The details about + writing correct changelogs are explained in the skel.ChangeLog file which you + can find in the root directory of the portage repository. diff --git a/sci-chemistry/gromacs/ChangeLog b/sci-chemistry/gromacs/ChangeLog deleted file mode 100644 index 6d89c522..00000000 --- a/sci-chemistry/gromacs/ChangeLog +++ /dev/null @@ -1,720 +0,0 @@ -# ChangeLog for sci-chemistry/gromacs -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.159 2015/08/02 21:43:22 alexxy Exp $ - -*gromacs-5.0.6 (02 Aug 2015) - - 02 Aug 2015; Alexey Shvetsov +gromacs-5.0.6.ebuild: - Version bump. This one seems to be last version for 5.0.x series - -*gromacs-5.0.5 (21 Jun 2015) - - 21 Jun 2015; Christoph Junghans +gromacs-5.0.5.ebuild: - version bump - - 08 Mar 2015; Christoph Junghans -gromacs-4.6.5.ebuild, - -gromacs-4.6.7.ebuild, metadata.xml: - remove old - -*gromacs-5.0.4-r1 (06 Mar 2015) - - 06 Mar 2015; Justin Lecher +gromacs-5.0.4-r1.ebuild, - metadata.xml: - Install missing header - - 26 Feb 2015; Markus Meier gromacs-5.0.4.ebuild: - arm stable, bug #538370 - - 25 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: - Stable for x86, wrt bug #538370 - - 23 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: - Stable for ppc64, wrt bug #538370 - - 19 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: - Stable for amd64, wrt bug #538370 - - 31 Jan 2015; Christoph Junghans -gromacs-4.6.6.ebuild, - -gromacs-5.0.1.ebuild, -gromacs-5.0.2-r1.ebuild, -gromacs-5.0.2.ebuild, - -gromacs-5.0.ebuild: - remove old - - 31 Jan 2015; Christoph Junghans gromacs-4.6.5.ebuild, - gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild, - gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.4.ebuild, - gromacs-5.0.ebuild, metadata.xml: - Switch to CPU_FLAGS_X86 (bug #538268) - -*gromacs-5.0.4 (21 Dec 2014) - - 21 Dec 2014; Christoph Junghans +gromacs-5.0.4.ebuild: - version bump - - 25 Nov 2014; Christoph Junghans gromacs-4.6.5.ebuild, - gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild, - gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.ebuild: - fixed a typo preventing AVX2 support (bug #530454) - -*gromacs-5.0.2-r1 (21 Oct 2014) - - 21 Oct 2014; Christoph Junghans +gromacs-5.0.2-r1.ebuild: - fix bash completion (bug #526318) - -*gromacs-5.0.2 (02 Oct 2014) - - 02 Oct 2014; Alexey Shvetsov +gromacs-5.0.2.ebuild: - Version bump =D - -*gromacs-5.0.1 (06 Sep 2014) - - 06 Sep 2014; Christoph Junghans +gromacs-5.0.1.ebuild: - version bump - - 04 Sep 2014; Christoph Junghans gromacs-5.0.ebuild: - added ~x64-macos (tested by me) - -*gromacs-4.6.7 (29 Aug 2014) - - 29 Aug 2014; Christoph Junghans +gromacs-4.6.7.ebuild: - version bump - - 07 Jul 2014; Christoph Junghans -gromacs-4.6.2.ebuild: - remove old - -*gromacs-4.6.6 (07 Jul 2014) - - 07 Jul 2014; Christoph Junghans +gromacs-4.6.6.ebuild: - version bump - -*gromacs-5.0 (30 Jun 2014) - - 30 Jun 2014; Alexey Shvetsov +gromacs-5.0.ebuild, - metadata.xml: - [sci-chemistry/gromacs] GROMACS 5.0 finaly relesed - - 26 Mar 2014; Markus Meier gromacs-4.6.5.ebuild: - arm stable, bug #496632 - - 02 Mar 2014; Pacho Ramos gromacs-4.6.5.ebuild: - amd64 stable, bug #496632 - - 24 Feb 2014; Pawel Hajdan jr gromacs-4.6.5.ebuild: - x86 stable wrt bug #496632 - - 19 Jan 2014; Agostino Sarubbo gromacs-4.6.5.ebuild: - Stable for ppc64, wrt bug #496632 - - 31 Dec 2013; Christoph Junghans - -files/gromacs-4.5.5-cmake-cpp-asm.patch, - -files/gromacs-4.5.5-enable-see.patch, - -files/gromacs-4.5.7-cmake-cpp-asm.patch, -gromacs-4.5.5-r1.ebuild, - -gromacs-4.5.7.ebuild, -gromacs-4.6.3.ebuild, -gromacs-4.6.4.ebuild, - metadata.xml: - clean up - -*gromacs-4.6.5 (05 Dec 2013) - - 05 Dec 2013; Alexey Shvetsov +gromacs-4.6.5.ebuild: - Version bump =D - -*gromacs-4.6.4 (13 Nov 2013) - - 13 Nov 2013; Christoph Junghans +gromacs-4.6.4.ebuild: - version bump - - 02 Sep 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: - Stable for x86, wrt bug #472124 - - 31 Aug 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: - Stable for arm, wrt bug #472124 - - 06 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: - Stable for alpha, wrt bug #472124 - -*gromacs-4.6.3 (05 Jul 2013) - - 05 Jul 2013; Christoph Junghans +gromacs-4.6.3.ebuild: - version bump - - 04 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: - Stable for ppc64, wrt bug #472124 - - 02 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: - Stable for amd64, wrt bug #472124 - -*gromacs-4.6.2 (01 Jun 2013) - - 01 Jun 2013; Christoph Junghans +gromacs-4.6.2.ebuild, - -files/gromacs-4.6.1-openmm.patch, -gromacs-4.6.1.ebuild: - version bump - - 28 May 2013; Christoph Junghans gromacs-4.6.1.ebuild: - fixed a typo, which prevented cuda build - - 05 May 2013; Christoph Junghans gromacs-4.5.7.ebuild: - clean up fortran - -*gromacs-4.5.7 (03 May 2013) - - 03 May 2013; Christoph Junghans - +files/gromacs-4.5.7-cmake-cpp-asm.patch, +gromacs-4.5.7.ebuild: - added recent 4.5.x version (bug #468454) - - 09 Mar 2013; Christoph Junghans gromacs-4.6.1.ebuild: - fix cuda build (bug #460518) - -*gromacs-4.6.1 (06 Mar 2013) - - 06 Mar 2013; Christoph Junghans - +files/gromacs-4.6.1-openmm.patch, +gromacs-4.6.1.ebuild, -gromacs-4.6.ebuild, - -gromacs-4.6_beta3-r1.ebuild: - version bump - - 12 Feb 2013; Christoph Junghans gromacs-4.6.ebuild, - gromacs-4.6_beta3-r1.ebuild, metadata.xml: - sse41 -> sse4_1 (bug #456886) + ninja has missing keywords - - 09 Feb 2013; Pacho Ramos gromacs-4.6.ebuild: - Use readme.gentoo.eclass for elog message (#456068) - - 25 Jan 2013; Christoph Junghans gromacs-4.6.ebuild: - added ~arm tested by me - -*gromacs-4.6 (19 Jan 2013) - - 19 Jan 2013; Christoph Junghans +gromacs-4.6.ebuild: - version bump - - 29 Dec 2012; Christoph Junghans - gromacs-4.6_beta3-r1.ebuild: - fixed build with mkl-11* - -*gromacs-4.6_beta3-r1 (26 Dec 2012) - - 26 Dec 2012; Christoph Junghans - +gromacs-4.6_beta3-r1.ebuild, -gromacs-4.6_beta3.ebuild, metadata.xml: - sync with sci overlay - -*gromacs-4.6_beta3 (22 Dec 2012) - - 22 Dec 2012; Christoph Junghans +gromacs-4.6_beta3.ebuild, - -gromacs-4.6_beta2.ebuild, metadata.xml: - version bump - - 08 Dec 2012; Christoph Junghans gromacs-4.5.5-r1.ebuild, - gromacs-4.6_beta2.ebuild: - CMAKE_BUILD_DIR -> BUILD_DIR - -*gromacs-4.6_beta2 (07 Dec 2012) - - 07 Dec 2012; Christoph Junghans +gromacs-4.6_beta2.ebuild, - -gromacs-4.6_beta1.ebuild: - version bump - -*gromacs-4.6_beta1 (30 Nov 2012) - - 30 Nov 2012; Christoph Junghans +gromacs-4.6_beta1.ebuild, - metadata.xml: - version bump - - 19 Oct 2012; Justin Lecher gromacs-4.5.5-r1.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 14 Oct 2012; Justin Lecher gromacs-4.5.5-r1.ebuild: - Prepare for fortran2.eclass update - - 04 May 2012; Jeff Horelick gromacs-4.5.5-r1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 09 Mar 2012; Christoph Junghans -gromacs-4.5.4-r1.ebuild, - metadata.xml: - remove old (fixes bug #392121) - - 08 Mar 2012; Brent Baude gromacs-4.5.5-r1.ebuild: - Marking gromacs-4.5.5-r1 ppc64 for bug 391147 - - 06 Feb 2012; Christoph Junghans gromacs-4.5.4-r1.ebuild, - gromacs-4.5.5-r1.ebuild: - fix bug #402339 - - 05 Feb 2012; Raúl Porcel gromacs-4.5.4-r1.ebuild, - gromacs-4.5.5-r1.ebuild: - Drop alpha/sparc keywords - - 06 Jan 2012; Christoph Junghans -gromacs-4.5.4-r2.ebuild, - -gromacs-4.5.5.ebuild: - remove obsolete - - 06 Jan 2012; Christoph Junghans gromacs-4.5.5-r1.ebuild: - keyword ~x86-macos - - 26 Dec 2011; Markus Meier gromacs-4.5.5-r1.ebuild: - x86 stable, bug #391147 - - 20 Dec 2011; Agostino Sarubbo gromacs-4.5.5-r1.ebuild: - Stable for AMD64, wrt bug #391147 - -*gromacs-4.5.5-r1 (19 Dec 2011) - - 19 Dec 2011; Christoph Junghans +gromacs-4.5.5-r1.ebuild, - +files/gromacs-4.5.5-cmake-cpp-asm.patch, - +files/gromacs-4.5.5-enable-see.patch: - bring back sse2 kernels - - 14 Dec 2011; Agostino Sarubbo gromacs-4.5.5.ebuild: - Stable for AMD64, wrt bug #391147 - - 11 Dec 2011; Pawel Hajdan jr gromacs-4.5.5.ebuild: - x86 stable wrt bug #391147 - - 28 Sep 2011; Christoph Junghans gromacs-4.5.5.ebuild: - cmake variable LIB was renamed to GMXLIB - -*gromacs-4.5.5 (27 Sep 2011) - - 27 Sep 2011; Alexey Shvetsov +gromacs-4.5.5.ebuild: - Version bump - - 10 Sep 2011; Christoph Junghans gromacs-4.5.4-r1.ebuild, - gromacs-4.5.4-r2.ebuild: - Migrate to the bash-completion-r1 eclass - - 18 Jul 2011; Christoph Junghans gromacs-4.5.4-r2.ebuild: - fix for external blas/lapack (bug #373559) - - 17 Jul 2011; Christoph Junghans gromacs-4.5.4-r2.ebuild: - corrected libdir (bug #375473) - - 26 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, - gromacs-4.5.4-r2.ebuild, metadata.xml: - migrate from 'git' to 'git-2' - - 23 Jun 2011; Christoph Junghans gromacs-4.5.4-r1.ebuild, - gromacs-4.5.4-r2.ebuild: - only USE=fkernels needs fortran - - 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, - gromacs-4.5.4-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, - gromacs-4.5.4-r2.ebuild: - Added fortran-2.eclass support - - 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild: - Use append-libs - -*gromacs-4.5.4-r2 (08 Jun 2011) - - 08 Jun 2011; Christoph Junghans +gromacs-4.5.4-r2.ebuild: - build with cmake to decrease build time - - 01 May 2011; Kacper Kowalik -gromacs-4.5.3-r4.ebuild, - -gromacs-4.5.4.ebuild, gromacs-4.5.4-r1.ebuild: - ppc64 stable wrt #357017. Drop old. - - 11 Apr 2011; Christoph Mende gromacs-4.5.4-r1.ebuild: - Stable on amd64 wrt bug #357017 - - 10 Apr 2011; Raúl Porcel gromacs-4.5.4-r1.ebuild: - alpha/sparc stable wrt #357017 - - 10 Apr 2011; Christoph Junghans -gromacs-4.0.7-r4.ebuild, - -files/gromacs-4.0.9999-docdir.patch: - remove 4.0.* (EOM) - - 10 Apr 2011; Thomas Kahle gromacs-4.5.4-r1.ebuild: - x86 stable per bug 357017 - -*gromacs-4.5.4-r1 (04 Apr 2011) - - 04 Apr 2011; Alexey Shvetsov +gromacs-4.5.4-r1.ebuild: - Fix QA execstack bug #361687 - - 04 Apr 2011; Christoph Junghans -gromacs-4.0.7-r5.ebuild, - -gromacs-4.5.3.ebuild, -gromacs-4.5.3-r3.ebuild: - Removed old - - 04 Apr 2011; Christoph Junghans gromacs-4.5.4.ebuild: - Removed sse use flag (fixed bug #361933) - - 02 Apr 2011; Raúl Porcel gromacs-4.5.3-r4.ebuild: - alpha/sparc stable wrt #357017 - - 02 Apr 2011; Kacper Kowalik gromacs-4.5.4.ebuild: - Bump to EAPI=4 for REQUIRED_USE on fkernels and threads wrt #361687. Mark - ppc64 stable wrt #357017 - - 02 Apr 2011; Samuli Suominen gromacs-4.5.4.ebuild: - Remove illegal QA_EXECSTACK for source based package. - - 02 Apr 2011; Kacper Kowalik gromacs-4.5.4.ebuild: - Revert to ~ppc64 - - 25 Mar 2011; Kacper Kowalik gromacs-4.5.4.ebuild: - ppc64 stable wrt #357017 - - 22 Mar 2011; Christoph Junghans gromacs-4.5.4.ebuild: - New manual, added back pkg-config to DEPEND - -*gromacs-4.5.4 (21 Mar 2011) - - 21 Mar 2011; Alexey Shvetsov +gromacs-4.5.4.ebuild: - Version bump - - 17 Mar 2011; Alexey Shvetsov gromacs-4.5.3-r4.ebuild: - Clean up ebuild a bit - - 09 Mar 2011; Thomas Kahle gromacs-4.5.3-r4.ebuild: - x86 stable per bug 357017 - - 08 Mar 2011; Markos Chandras gromacs-4.5.3-r4.ebuild: - Stable on amd64 wrt bug #357017 - -*gromacs-4.5.3-r4 (05 Mar 2011) - - 05 Mar 2011; Alexey Shvetsov +gromacs-4.5.3-r4.ebuild: - Rework using of external blas & lapack. Also fix issues with prefix and mpi - build - - 02 Mar 2011; Justin Lecher gromacs-4.0.7-r4.ebuild, - gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild, gromacs-4.5.3-r3.ebuild: - Correct Slots for gtk 3 introduction to tree - -*gromacs-4.5.3-r3 (19 Feb 2011) - - 19 Feb 2011; Christoph Junghans +gromacs-4.5.3-r3.ebuild: - Version bump (fixes bug #339837) - - 04 Jan 2011; Jeremy Olexa metadata.xml: - QA: Remove redundant local use flag description - - 16 Dec 2010; Justin Lecher gromacs-4.0.7-r4.ebuild, - gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild: - Removal of fortran.eclass, #348851 - -*gromacs-4.5.3 (25 Nov 2010) -*gromacs-4.0.7-r5 (25 Nov 2010) - - 25 Nov 2010; Alexey Shvetsov -gromacs-4.0.4.ebuild, - -files/gromacs-4.0.4-configure-gfortran.patch, - -files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5.ebuild, - gromacs-4.0.7-r4.ebuild, +gromacs-4.0.7-r5.ebuild, - -files/gromacs-4.0.9999-ccache.patch, - -files/gromacs-4.0.9999-configure-gfortran.patch, -gromacs-4.5.1.ebuild, - +gromacs-4.5.3.ebuild: - Version bump. Clean up old versions. Thanks to Christoph Junghans - - 25 Oct 2010; Samuli Suominen - gromacs-4.0.7-r4.ebuild: - ppc64 stable wrt #326151 - - 12 Oct 2010; Raúl Porcel gromacs-4.0.7-r4.ebuild: - sparc stable wrt #326151 - -*gromacs-4.5.1 (14 Sep 2010) - - 14 Sep 2010; Alexey Shvetsov -gromacs-4.0.7-r3.ebuild, - +gromacs-4.5.1.ebuild: - Version bump. Now it can use ffambber. And threads. Many thanks to - Christoph Junghans - - 11 Sep 2010; Tobias Klausmann - gromacs-4.0.7-r4.ebuild: - Stable on alpha, bug #326151 - - 17 Jul 2010; Kacper Kowalik - gromacs-4.0.7-r3.ebuild, gromacs-4.0.7-r4.ebuild, - -files/gromacs-4.0.7_upstream2010-06-08.patch.gz: - Move gromacs-4.0.7_upstream2010-06-08.patch.gz to gentoo mirrors. Fixes - bug 328659. Thanks to Samuli for the report - - 10 Jul 2010; Christian Faulhammer - gromacs-4.0.7-r4.ebuild: - stable x86, bug 326151 - - 09 Jul 2010; Pacho Ramos gromacs-4.0.7-r4.ebuild: - amd64 stable, bug 326151 - - 08 Jul 2010; Alexey Shvetsov gromacs-4.0.7-r4.ebuild: - Fix typo in ebuild for prefix setup - -*gromacs-4.0.7-r4 (04 Jul 2010) - - 04 Jul 2010; Alexey Shvetsov +gromacs-4.0.7-r4.ebuild: - Fix bug #326331. thanks to Christoph Junghans - - 05 Jul 2010; Alexey Shvetsov -gromacs-3.3.1-r1.ebuild, - -gromacs-3.3.3.ebuild: - Gromacs 3.x moved to sci overlay since its unmaintained and no longer - supported - -*gromacs-4.0.7-r3 (27 Jun 2010) - - 27 Jun 2010; Alexey Shvetsov -gromacs-4.0.7.ebuild, - -gromacs-4.0.7-r1.ebuild, +gromacs-4.0.7-r3.ebuild, - -files/gromacs-4.0.7-docdir.patch, - +files/gromacs-4.0.7_upstream2010-06-08.patch: - Added patches from upstream stable branch. Added ffamber ports. Also fixed - bugs #301854 and #284431. Big thank to Christoph Junghans - - 24 Jun 2010; Justin Lecher gromacs-3.3.1-r1.ebuild, - gromacs-3.3.3.ebuild: - Blocking sci-mathematics/num-utils, #257566 - -*gromacs-4.0.7-r1 (24 Jan 2010) - - 24 Jan 2010; Alexey Shvetsov +gromacs-4.0.7-r1.ebuild, - +files/gromacs-4.0.9999-ccache.patch, - +files/gromacs-4.0.9999-configure-gfortran.patch, - +files/gromacs-4.0.9999-docdir.patch: - Fix bug #302048. thanks to Christoph Junghans - - 18 Jan 2010; Raúl Porcel gromacs-4.0.5.ebuild: - alpha stable - - 08 Dec 2009; Alexey Shvetsov - +files/gromacs-4.0.7-docdir.patch: - Add missing patch. thanks to rei4dan - -*gromacs-4.0.7 (07 Dec 2009) - - 07 Dec 2009; Alexey Shvetsov +gromacs-4.0.7.ebuild: - Version bump - - 31 Oct 2009; Raúl Porcel gromacs-4.0.5.ebuild: - sparc stable wrt #260995 - - 30 Oct 2009; Markus Meier gromacs-4.0.5.ebuild: - amd64/x86 stable, bug #260995 - - 26 Sep 2009; Brent Baude gromacs-4.0.4.ebuild: - Marking gromacs-4.0.4 ppc64 for bug 260995 - - 28 Aug 2009; William Hubbs metadata.xml: - new global use flag "zsh-completion" - - 15 May 2009; Markus Meier gromacs-4.0.4.ebuild: - amd64 stable, bug #260995 - - 14 May 2009; Alexey Shvetsov -gromacs-4.0.3.ebuild, - +gromacs-4.0.5.ebuild: - Drop old version; Fix keywords for 4.0.5. Sorry =) - -*gromacs-4.0.5 (14 May 2009) - - 14 May 2009; Alexey Shvetsov +gromacs-4.0.5.ebuild: - Bump new version with bugfixes. Bug #269754 - - 14 May 2009; Christian Faulhammer gromacs-4.0.4.ebuild: - stable x86, bug 260995 - - 13 May 2009; Tobias Klausmann gromacs-4.0.4.ebuild: - Stable on alpha, bug #260995 - - 10 May 2009; Ferris McCormick gromacs-4.0.4.ebuild: - Sparc stable, Bug #260995, which see for discussion. - - 10 May 2009; Alexey Shvetsov gromacs-4.0.4.ebuild, - +files/gromacs-4.0.4-sparc-cyclecounter.patch: - Add upstream fix for sparc bug #260995 - -*gromacs-4.0.4 (20 Apr 2009) - - 20 Apr 2009; Alexey Shvetsov - +files/gromacs-4.0.4-configure-gfortran.patch, metadata.xml, - -gromacs-4.0.ebuild, -gromacs-4.0.2.ebuild, +gromacs-4.0.4.ebuild: - Add new gromacs 4.0.4 - - 08 Mar 2009; Markus Meier gromacs-4.0.3.ebuild: - amd64/x86 stable, bug #260995 - - 22 Jan 2009; Jeff Gardner +gromacs-4.0.3.ebuild: - Latest version. - -*gromacs-4.0.2 (04 Jan 2009) - - 04 Jan 2009; Jeff Gardner +gromacs-4.0.2.ebuild: - Latest version, thanks to Alexxy for the prod :) - -*gromacs-4.0 (12 Oct 2008) - - 12 Oct 2008; Jeff Gardner +gromacs-4.0.ebuild: - Latest version, closing bug #241474 thanks to Alexey Shvetsov - - 06 Oct 2008; Jeff Gardner ChangeLog, Manifest: - Fixing changelog to reflect addition of gromacs-3.3.3.ebuild - -*gromacs-3.3.3 (06 Oct 2008) - - 06 Oct 2008; Jeff Gardner +gromacs-3.3.3.ebuild: - Latest stable version, thanks to Alexey Shvetsov, closing bug #193532 - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - - 27 Jun 2008; Ulrich Mueller gromacs-3.3.1-r1.ebuild: - Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. - - 23 Jun 2008; Jeff Gardner - -files/gromacs-alpha-axp_asm.patch, -files/gromacs-ppc64-altivec.patch, - -gromacs-3.2.1-r1.ebuild, gromacs-3.3.1-r1.ebuild: - Moving disco manpage to g_disco, fixing bug 210083. - - 03 Jun 2008; Jeff Gardner gromacs-3.3.1-r1.ebuild: - No altivec patching with this gromacs version. Thanks to Maik Nijhuis in - bug #224773. - - 13 Jun 2007; Raúl Porcel gromacs-3.3.1-r1.ebuild: - Modify the ebuild so it compiles on alpha and mark stable wrt #168182 - - 17 Mar 2007; Steve Dibb gromacs-3.3.1-r1.ebuild: - amd64 stable, bug 168182 - - 11 Mar 2007; Sven Wegener gromacs-3.3.1-r1.ebuild: - Properly indent src_compile, thanks to ferringb. - - 08 Mar 2007; Jason Wever gromacs-3.3.1-r1.ebuild: - Stable on SPARC wrt bug #168182. - - 07 Mar 2007; Jeff Gardner gromacs-3.3.1-r1.ebuild: - Fix up the demo script so the xterms stay open. - - 24 Feb 2007; Raúl Porcel gromacs-3.3.1-r1.ebuild: - x86 stable wrt bug 168182 - - 23 Feb 2007; Markus Rothe gromacs-3.3.1-r1.ebuild: - Stable on ppc64; bug #168182 - - 07 Jan 2007; Danny van Dyk -gromacs-3.2.1.ebuild, - -gromacs-3.3.ebuild, -gromacs-3.3.1.ebuild: - QA: Removed unused versions. - - 20 Dec 2006; Jeff Gardner gromacs-3.3.1-r1.ebuild: - Small fix of DEPEND - - 20 Dec 2006; Jeff Gardner ChangeLog: - Many thanks to Rene Meier, Shvetsov Alexey Mathias Weigt, dawe, and Mike - Hlavac for their contributions to gromacs-3.3.1-r1. - -*gromacs-3.3.1-r1 (17 Dec 2006) - - 17 Dec 2006; Jeff Gardner +gromacs-3.3.1-r1.ebuild: - Fixup to address bugs 135146 118421 and 147614. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*gromacs-3.3.1 (08 Aug 2006) - - 08 Aug 2006; Markus Dittrich +gromacs-3.3.1.ebuild: - Version bump. Ebuild now inherits the fortran.eclass and forces - the use of g77 since gfortran is presently missing some of the - fortran intrinsics needed by gromacs. See bug #141672. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 25 Jun 2006; Donnie Berkholz ; gromacs-3.2.1.ebuild, - gromacs-3.2.1-r1.ebuild, gromacs-3.3.ebuild: - (#116346) Change xml2 USE flag to xml. - - 07 May 2006; Markus Rothe gromacs-3.2.1-r1.ebuild: - Stable on ppc64; bug #89969 - -*gromacs-3.3 (14 Oct 2005) - - 14 Oct 2005; Donnie Berkholz ; +gromacs-3.3.ebuild: - (#109184) Bump. Main change in ebuild is adding a check for fftw built w/ - mpi if trying to build w/ mpi. One of the more interesting upstream changes - is the addition of x86-64 and ia64 assembly. - - 05 Aug 2005; +files/gromacs-ppc64-altivec.patch, - gromacs-3.2.1-r1.ebuild: - Added patch back as binary due to metatags. Made sure patch only applies when ppc64 && altivec - -*gromacs-3.2.1-r1 (04 Aug 2005) - - 04 Aug 2005; +files/gromacs-ppc64-altivec.patch, - +gromacs-3.2.1-r1.ebuild: - Added ppc64 support and altivec support - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +gromacs-3.2.1.ebuild: - Moved from app-sci/gromacs to sci-chemistry/gromacs. - - 06 Jun 2004; Danny van Dyk gromacs-3.2.1.ebuild: - Marked stable on amd64. - - 22 Apr 2004; Donnie Berkholz ; - -files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild, - -gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild: - Mark 3.2.1 stable on x86. Remove old versions. - - 22 Apr 2004; Donnie Berkholz ; - gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild: - Add app-shells/tcsh to dependencies (#48691). - - 22 Apr 2004; Danny van Dyk gromacs-3.2.1.ebuild: - marked ~amd64 - -*gromacs-3.2.1 (02 Apr 2004) - - 02 Apr 2004; Donnie Berkholz ; gromacs-3.2.1.ebuild: - Version bump, closes #44377. - -*gromacs-3.2 (29 Feb 2004) - - 29 Feb 2004; Donnie Berkholz ; gromacs-3.2.ebuild, - files/gromacs-3.2-all-static-fix.patch: - Version bump. New xml2 USE flag. - -*gromacs-3.1.4-r2 (28 Feb 2004) - - 28 Feb 2004; Donnie Berkholz ; - gromacs-3.1.4-r2.ebuild: - Closing bug #42989 by installing binaries to /usr/bin. Also discovered libs - needed to be installed to /usr/lib. Enabled assembly for Alphas too, if any - Alpha user ever tries this. - - 04 Oct 2003; Donnie Berkholz ; gromacs-3.1.3.ebuild, - gromacs-3.1.4.ebuild: - Pulling old versions. - - 04 Oct 2003; Donnie Berkholz ; - gromacs-3.1.4-r1.ebuild: - Fixing fftw dep. Won't compile against fftw-3 yet, in part because it looks - for fftw3.h instead of fftw.h, and in part because MPI doesn't work in fftw-3 - yet. - -*gromacs-3.1.4-r1 (23 Mar 2003) - - 23 Mar 2003; George Shapovalov gromacs-3.1.4-r1.ebuild : - added mpi support, lam-mpi is the only working implementation at the moment. - !IMPORTANT!: - Since portage cannot at present check whether optional dependencies of dependencies were turned on, - please check yourself that gromacs and fftw have identical mpi setting. - Generally USE="mpi" emerge gromacs should work fine if you did not install fftw previously (with - different mpi off for example). - -*gromacs-3.1.4 (08 Nov 2002) - - 08 Nov 2002; George Shapovalov gromacs-3.1.4.ebuild, files/digest-gromacs-3.1.4 : - - new version. - !!!IMPORTANT!!! - I changed --prefix to point to /usr for FHS compliance. - Now the binaries and the libs are getting installed into - /usr/i686-pc-linux-gnu/{bin,lib} correspondingly and the data into /usr/share/gromacs-${PV} - This seems to fit well in the existing direcory structure and does not conflict with gcc. - -*gromacs-3.1.3 (27 Apr 2002) - - 27 Apr 2002; George Shapovalov all_files : - - initial release. diff --git a/sci-chemistry/gromacs/ChangeLog-2015 b/sci-chemistry/gromacs/ChangeLog-2015 new file mode 100644 index 00000000..6d89c522 --- /dev/null +++ b/sci-chemistry/gromacs/ChangeLog-2015 @@ -0,0 +1,720 @@ +# ChangeLog for sci-chemistry/gromacs +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.159 2015/08/02 21:43:22 alexxy Exp $ + +*gromacs-5.0.6 (02 Aug 2015) + + 02 Aug 2015; Alexey Shvetsov +gromacs-5.0.6.ebuild: + Version bump. This one seems to be last version for 5.0.x series + +*gromacs-5.0.5 (21 Jun 2015) + + 21 Jun 2015; Christoph Junghans +gromacs-5.0.5.ebuild: + version bump + + 08 Mar 2015; Christoph Junghans -gromacs-4.6.5.ebuild, + -gromacs-4.6.7.ebuild, metadata.xml: + remove old + +*gromacs-5.0.4-r1 (06 Mar 2015) + + 06 Mar 2015; Justin Lecher +gromacs-5.0.4-r1.ebuild, + metadata.xml: + Install missing header + + 26 Feb 2015; Markus Meier gromacs-5.0.4.ebuild: + arm stable, bug #538370 + + 25 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: + Stable for x86, wrt bug #538370 + + 23 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: + Stable for ppc64, wrt bug #538370 + + 19 Feb 2015; Agostino Sarubbo gromacs-5.0.4.ebuild: + Stable for amd64, wrt bug #538370 + + 31 Jan 2015; Christoph Junghans -gromacs-4.6.6.ebuild, + -gromacs-5.0.1.ebuild, -gromacs-5.0.2-r1.ebuild, -gromacs-5.0.2.ebuild, + -gromacs-5.0.ebuild: + remove old + + 31 Jan 2015; Christoph Junghans gromacs-4.6.5.ebuild, + gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild, + gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.4.ebuild, + gromacs-5.0.ebuild, metadata.xml: + Switch to CPU_FLAGS_X86 (bug #538268) + +*gromacs-5.0.4 (21 Dec 2014) + + 21 Dec 2014; Christoph Junghans +gromacs-5.0.4.ebuild: + version bump + + 25 Nov 2014; Christoph Junghans gromacs-4.6.5.ebuild, + gromacs-4.6.6.ebuild, gromacs-4.6.7.ebuild, gromacs-5.0.1.ebuild, + gromacs-5.0.2-r1.ebuild, gromacs-5.0.2.ebuild, gromacs-5.0.ebuild: + fixed a typo preventing AVX2 support (bug #530454) + +*gromacs-5.0.2-r1 (21 Oct 2014) + + 21 Oct 2014; Christoph Junghans +gromacs-5.0.2-r1.ebuild: + fix bash completion (bug #526318) + +*gromacs-5.0.2 (02 Oct 2014) + + 02 Oct 2014; Alexey Shvetsov +gromacs-5.0.2.ebuild: + Version bump =D + +*gromacs-5.0.1 (06 Sep 2014) + + 06 Sep 2014; Christoph Junghans +gromacs-5.0.1.ebuild: + version bump + + 04 Sep 2014; Christoph Junghans gromacs-5.0.ebuild: + added ~x64-macos (tested by me) + +*gromacs-4.6.7 (29 Aug 2014) + + 29 Aug 2014; Christoph Junghans +gromacs-4.6.7.ebuild: + version bump + + 07 Jul 2014; Christoph Junghans -gromacs-4.6.2.ebuild: + remove old + +*gromacs-4.6.6 (07 Jul 2014) + + 07 Jul 2014; Christoph Junghans +gromacs-4.6.6.ebuild: + version bump + +*gromacs-5.0 (30 Jun 2014) + + 30 Jun 2014; Alexey Shvetsov +gromacs-5.0.ebuild, + metadata.xml: + [sci-chemistry/gromacs] GROMACS 5.0 finaly relesed + + 26 Mar 2014; Markus Meier gromacs-4.6.5.ebuild: + arm stable, bug #496632 + + 02 Mar 2014; Pacho Ramos gromacs-4.6.5.ebuild: + amd64 stable, bug #496632 + + 24 Feb 2014; Pawel Hajdan jr gromacs-4.6.5.ebuild: + x86 stable wrt bug #496632 + + 19 Jan 2014; Agostino Sarubbo gromacs-4.6.5.ebuild: + Stable for ppc64, wrt bug #496632 + + 31 Dec 2013; Christoph Junghans + -files/gromacs-4.5.5-cmake-cpp-asm.patch, + -files/gromacs-4.5.5-enable-see.patch, + -files/gromacs-4.5.7-cmake-cpp-asm.patch, -gromacs-4.5.5-r1.ebuild, + -gromacs-4.5.7.ebuild, -gromacs-4.6.3.ebuild, -gromacs-4.6.4.ebuild, + metadata.xml: + clean up + +*gromacs-4.6.5 (05 Dec 2013) + + 05 Dec 2013; Alexey Shvetsov +gromacs-4.6.5.ebuild: + Version bump =D + +*gromacs-4.6.4 (13 Nov 2013) + + 13 Nov 2013; Christoph Junghans +gromacs-4.6.4.ebuild: + version bump + + 02 Sep 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: + Stable for x86, wrt bug #472124 + + 31 Aug 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: + Stable for arm, wrt bug #472124 + + 06 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: + Stable for alpha, wrt bug #472124 + +*gromacs-4.6.3 (05 Jul 2013) + + 05 Jul 2013; Christoph Junghans +gromacs-4.6.3.ebuild: + version bump + + 04 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: + Stable for ppc64, wrt bug #472124 + + 02 Jul 2013; Agostino Sarubbo gromacs-4.6.2.ebuild: + Stable for amd64, wrt bug #472124 + +*gromacs-4.6.2 (01 Jun 2013) + + 01 Jun 2013; Christoph Junghans +gromacs-4.6.2.ebuild, + -files/gromacs-4.6.1-openmm.patch, -gromacs-4.6.1.ebuild: + version bump + + 28 May 2013; Christoph Junghans gromacs-4.6.1.ebuild: + fixed a typo, which prevented cuda build + + 05 May 2013; Christoph Junghans gromacs-4.5.7.ebuild: + clean up fortran + +*gromacs-4.5.7 (03 May 2013) + + 03 May 2013; Christoph Junghans + +files/gromacs-4.5.7-cmake-cpp-asm.patch, +gromacs-4.5.7.ebuild: + added recent 4.5.x version (bug #468454) + + 09 Mar 2013; Christoph Junghans gromacs-4.6.1.ebuild: + fix cuda build (bug #460518) + +*gromacs-4.6.1 (06 Mar 2013) + + 06 Mar 2013; Christoph Junghans + +files/gromacs-4.6.1-openmm.patch, +gromacs-4.6.1.ebuild, -gromacs-4.6.ebuild, + -gromacs-4.6_beta3-r1.ebuild: + version bump + + 12 Feb 2013; Christoph Junghans gromacs-4.6.ebuild, + gromacs-4.6_beta3-r1.ebuild, metadata.xml: + sse41 -> sse4_1 (bug #456886) + ninja has missing keywords + + 09 Feb 2013; Pacho Ramos gromacs-4.6.ebuild: + Use readme.gentoo.eclass for elog message (#456068) + + 25 Jan 2013; Christoph Junghans gromacs-4.6.ebuild: + added ~arm tested by me + +*gromacs-4.6 (19 Jan 2013) + + 19 Jan 2013; Christoph Junghans +gromacs-4.6.ebuild: + version bump + + 29 Dec 2012; Christoph Junghans + gromacs-4.6_beta3-r1.ebuild: + fixed build with mkl-11* + +*gromacs-4.6_beta3-r1 (26 Dec 2012) + + 26 Dec 2012; Christoph Junghans + +gromacs-4.6_beta3-r1.ebuild, -gromacs-4.6_beta3.ebuild, metadata.xml: + sync with sci overlay + +*gromacs-4.6_beta3 (22 Dec 2012) + + 22 Dec 2012; Christoph Junghans +gromacs-4.6_beta3.ebuild, + -gromacs-4.6_beta2.ebuild, metadata.xml: + version bump + + 08 Dec 2012; Christoph Junghans gromacs-4.5.5-r1.ebuild, + gromacs-4.6_beta2.ebuild: + CMAKE_BUILD_DIR -> BUILD_DIR + +*gromacs-4.6_beta2 (07 Dec 2012) + + 07 Dec 2012; Christoph Junghans +gromacs-4.6_beta2.ebuild, + -gromacs-4.6_beta1.ebuild: + version bump + +*gromacs-4.6_beta1 (30 Nov 2012) + + 30 Nov 2012; Christoph Junghans +gromacs-4.6_beta1.ebuild, + metadata.xml: + version bump + + 19 Oct 2012; Justin Lecher gromacs-4.5.5-r1.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 14 Oct 2012; Justin Lecher gromacs-4.5.5-r1.ebuild: + Prepare for fortran2.eclass update + + 04 May 2012; Jeff Horelick gromacs-4.5.5-r1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 09 Mar 2012; Christoph Junghans -gromacs-4.5.4-r1.ebuild, + metadata.xml: + remove old (fixes bug #392121) + + 08 Mar 2012; Brent Baude gromacs-4.5.5-r1.ebuild: + Marking gromacs-4.5.5-r1 ppc64 for bug 391147 + + 06 Feb 2012; Christoph Junghans gromacs-4.5.4-r1.ebuild, + gromacs-4.5.5-r1.ebuild: + fix bug #402339 + + 05 Feb 2012; Raúl Porcel gromacs-4.5.4-r1.ebuild, + gromacs-4.5.5-r1.ebuild: + Drop alpha/sparc keywords + + 06 Jan 2012; Christoph Junghans -gromacs-4.5.4-r2.ebuild, + -gromacs-4.5.5.ebuild: + remove obsolete + + 06 Jan 2012; Christoph Junghans gromacs-4.5.5-r1.ebuild: + keyword ~x86-macos + + 26 Dec 2011; Markus Meier gromacs-4.5.5-r1.ebuild: + x86 stable, bug #391147 + + 20 Dec 2011; Agostino Sarubbo gromacs-4.5.5-r1.ebuild: + Stable for AMD64, wrt bug #391147 + +*gromacs-4.5.5-r1 (19 Dec 2011) + + 19 Dec 2011; Christoph Junghans +gromacs-4.5.5-r1.ebuild, + +files/gromacs-4.5.5-cmake-cpp-asm.patch, + +files/gromacs-4.5.5-enable-see.patch: + bring back sse2 kernels + + 14 Dec 2011; Agostino Sarubbo gromacs-4.5.5.ebuild: + Stable for AMD64, wrt bug #391147 + + 11 Dec 2011; Pawel Hajdan jr gromacs-4.5.5.ebuild: + x86 stable wrt bug #391147 + + 28 Sep 2011; Christoph Junghans gromacs-4.5.5.ebuild: + cmake variable LIB was renamed to GMXLIB + +*gromacs-4.5.5 (27 Sep 2011) + + 27 Sep 2011; Alexey Shvetsov +gromacs-4.5.5.ebuild: + Version bump + + 10 Sep 2011; Christoph Junghans gromacs-4.5.4-r1.ebuild, + gromacs-4.5.4-r2.ebuild: + Migrate to the bash-completion-r1 eclass + + 18 Jul 2011; Christoph Junghans gromacs-4.5.4-r2.ebuild: + fix for external blas/lapack (bug #373559) + + 17 Jul 2011; Christoph Junghans gromacs-4.5.4-r2.ebuild: + corrected libdir (bug #375473) + + 26 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, + gromacs-4.5.4-r2.ebuild, metadata.xml: + migrate from 'git' to 'git-2' + + 23 Jun 2011; Christoph Junghans gromacs-4.5.4-r1.ebuild, + gromacs-4.5.4-r2.ebuild: + only USE=fkernels needs fortran + + 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, + gromacs-4.5.4-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild, + gromacs-4.5.4-r2.ebuild: + Added fortran-2.eclass support + + 21 Jun 2011; Justin Lecher gromacs-4.5.4-r1.ebuild: + Use append-libs + +*gromacs-4.5.4-r2 (08 Jun 2011) + + 08 Jun 2011; Christoph Junghans +gromacs-4.5.4-r2.ebuild: + build with cmake to decrease build time + + 01 May 2011; Kacper Kowalik -gromacs-4.5.3-r4.ebuild, + -gromacs-4.5.4.ebuild, gromacs-4.5.4-r1.ebuild: + ppc64 stable wrt #357017. Drop old. + + 11 Apr 2011; Christoph Mende gromacs-4.5.4-r1.ebuild: + Stable on amd64 wrt bug #357017 + + 10 Apr 2011; Raúl Porcel gromacs-4.5.4-r1.ebuild: + alpha/sparc stable wrt #357017 + + 10 Apr 2011; Christoph Junghans -gromacs-4.0.7-r4.ebuild, + -files/gromacs-4.0.9999-docdir.patch: + remove 4.0.* (EOM) + + 10 Apr 2011; Thomas Kahle gromacs-4.5.4-r1.ebuild: + x86 stable per bug 357017 + +*gromacs-4.5.4-r1 (04 Apr 2011) + + 04 Apr 2011; Alexey Shvetsov +gromacs-4.5.4-r1.ebuild: + Fix QA execstack bug #361687 + + 04 Apr 2011; Christoph Junghans -gromacs-4.0.7-r5.ebuild, + -gromacs-4.5.3.ebuild, -gromacs-4.5.3-r3.ebuild: + Removed old + + 04 Apr 2011; Christoph Junghans gromacs-4.5.4.ebuild: + Removed sse use flag (fixed bug #361933) + + 02 Apr 2011; Raúl Porcel gromacs-4.5.3-r4.ebuild: + alpha/sparc stable wrt #357017 + + 02 Apr 2011; Kacper Kowalik gromacs-4.5.4.ebuild: + Bump to EAPI=4 for REQUIRED_USE on fkernels and threads wrt #361687. Mark + ppc64 stable wrt #357017 + + 02 Apr 2011; Samuli Suominen gromacs-4.5.4.ebuild: + Remove illegal QA_EXECSTACK for source based package. + + 02 Apr 2011; Kacper Kowalik gromacs-4.5.4.ebuild: + Revert to ~ppc64 + + 25 Mar 2011; Kacper Kowalik gromacs-4.5.4.ebuild: + ppc64 stable wrt #357017 + + 22 Mar 2011; Christoph Junghans gromacs-4.5.4.ebuild: + New manual, added back pkg-config to DEPEND + +*gromacs-4.5.4 (21 Mar 2011) + + 21 Mar 2011; Alexey Shvetsov +gromacs-4.5.4.ebuild: + Version bump + + 17 Mar 2011; Alexey Shvetsov gromacs-4.5.3-r4.ebuild: + Clean up ebuild a bit + + 09 Mar 2011; Thomas Kahle gromacs-4.5.3-r4.ebuild: + x86 stable per bug 357017 + + 08 Mar 2011; Markos Chandras gromacs-4.5.3-r4.ebuild: + Stable on amd64 wrt bug #357017 + +*gromacs-4.5.3-r4 (05 Mar 2011) + + 05 Mar 2011; Alexey Shvetsov +gromacs-4.5.3-r4.ebuild: + Rework using of external blas & lapack. Also fix issues with prefix and mpi + build + + 02 Mar 2011; Justin Lecher gromacs-4.0.7-r4.ebuild, + gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild, gromacs-4.5.3-r3.ebuild: + Correct Slots for gtk 3 introduction to tree + +*gromacs-4.5.3-r3 (19 Feb 2011) + + 19 Feb 2011; Christoph Junghans +gromacs-4.5.3-r3.ebuild: + Version bump (fixes bug #339837) + + 04 Jan 2011; Jeremy Olexa metadata.xml: + QA: Remove redundant local use flag description + + 16 Dec 2010; Justin Lecher gromacs-4.0.7-r4.ebuild, + gromacs-4.0.7-r5.ebuild, gromacs-4.5.3.ebuild: + Removal of fortran.eclass, #348851 + +*gromacs-4.5.3 (25 Nov 2010) +*gromacs-4.0.7-r5 (25 Nov 2010) + + 25 Nov 2010; Alexey Shvetsov -gromacs-4.0.4.ebuild, + -files/gromacs-4.0.4-configure-gfortran.patch, + -files/gromacs-4.0.4-sparc-cyclecounter.patch, -gromacs-4.0.5.ebuild, + gromacs-4.0.7-r4.ebuild, +gromacs-4.0.7-r5.ebuild, + -files/gromacs-4.0.9999-ccache.patch, + -files/gromacs-4.0.9999-configure-gfortran.patch, -gromacs-4.5.1.ebuild, + +gromacs-4.5.3.ebuild: + Version bump. Clean up old versions. Thanks to Christoph Junghans + + 25 Oct 2010; Samuli Suominen + gromacs-4.0.7-r4.ebuild: + ppc64 stable wrt #326151 + + 12 Oct 2010; Raúl Porcel gromacs-4.0.7-r4.ebuild: + sparc stable wrt #326151 + +*gromacs-4.5.1 (14 Sep 2010) + + 14 Sep 2010; Alexey Shvetsov -gromacs-4.0.7-r3.ebuild, + +gromacs-4.5.1.ebuild: + Version bump. Now it can use ffambber. And threads. Many thanks to + Christoph Junghans + + 11 Sep 2010; Tobias Klausmann + gromacs-4.0.7-r4.ebuild: + Stable on alpha, bug #326151 + + 17 Jul 2010; Kacper Kowalik + gromacs-4.0.7-r3.ebuild, gromacs-4.0.7-r4.ebuild, + -files/gromacs-4.0.7_upstream2010-06-08.patch.gz: + Move gromacs-4.0.7_upstream2010-06-08.patch.gz to gentoo mirrors. Fixes + bug 328659. Thanks to Samuli for the report + + 10 Jul 2010; Christian Faulhammer + gromacs-4.0.7-r4.ebuild: + stable x86, bug 326151 + + 09 Jul 2010; Pacho Ramos gromacs-4.0.7-r4.ebuild: + amd64 stable, bug 326151 + + 08 Jul 2010; Alexey Shvetsov gromacs-4.0.7-r4.ebuild: + Fix typo in ebuild for prefix setup + +*gromacs-4.0.7-r4 (04 Jul 2010) + + 04 Jul 2010; Alexey Shvetsov +gromacs-4.0.7-r4.ebuild: + Fix bug #326331. thanks to Christoph Junghans + + 05 Jul 2010; Alexey Shvetsov -gromacs-3.3.1-r1.ebuild, + -gromacs-3.3.3.ebuild: + Gromacs 3.x moved to sci overlay since its unmaintained and no longer + supported + +*gromacs-4.0.7-r3 (27 Jun 2010) + + 27 Jun 2010; Alexey Shvetsov -gromacs-4.0.7.ebuild, + -gromacs-4.0.7-r1.ebuild, +gromacs-4.0.7-r3.ebuild, + -files/gromacs-4.0.7-docdir.patch, + +files/gromacs-4.0.7_upstream2010-06-08.patch: + Added patches from upstream stable branch. Added ffamber ports. Also fixed + bugs #301854 and #284431. Big thank to Christoph Junghans + + 24 Jun 2010; Justin Lecher gromacs-3.3.1-r1.ebuild, + gromacs-3.3.3.ebuild: + Blocking sci-mathematics/num-utils, #257566 + +*gromacs-4.0.7-r1 (24 Jan 2010) + + 24 Jan 2010; Alexey Shvetsov +gromacs-4.0.7-r1.ebuild, + +files/gromacs-4.0.9999-ccache.patch, + +files/gromacs-4.0.9999-configure-gfortran.patch, + +files/gromacs-4.0.9999-docdir.patch: + Fix bug #302048. thanks to Christoph Junghans + + 18 Jan 2010; Raúl Porcel gromacs-4.0.5.ebuild: + alpha stable + + 08 Dec 2009; Alexey Shvetsov + +files/gromacs-4.0.7-docdir.patch: + Add missing patch. thanks to rei4dan + +*gromacs-4.0.7 (07 Dec 2009) + + 07 Dec 2009; Alexey Shvetsov +gromacs-4.0.7.ebuild: + Version bump + + 31 Oct 2009; Raúl Porcel gromacs-4.0.5.ebuild: + sparc stable wrt #260995 + + 30 Oct 2009; Markus Meier gromacs-4.0.5.ebuild: + amd64/x86 stable, bug #260995 + + 26 Sep 2009; Brent Baude gromacs-4.0.4.ebuild: + Marking gromacs-4.0.4 ppc64 for bug 260995 + + 28 Aug 2009; William Hubbs metadata.xml: + new global use flag "zsh-completion" + + 15 May 2009; Markus Meier gromacs-4.0.4.ebuild: + amd64 stable, bug #260995 + + 14 May 2009; Alexey Shvetsov -gromacs-4.0.3.ebuild, + +gromacs-4.0.5.ebuild: + Drop old version; Fix keywords for 4.0.5. Sorry =) + +*gromacs-4.0.5 (14 May 2009) + + 14 May 2009; Alexey Shvetsov +gromacs-4.0.5.ebuild: + Bump new version with bugfixes. Bug #269754 + + 14 May 2009; Christian Faulhammer gromacs-4.0.4.ebuild: + stable x86, bug 260995 + + 13 May 2009; Tobias Klausmann gromacs-4.0.4.ebuild: + Stable on alpha, bug #260995 + + 10 May 2009; Ferris McCormick gromacs-4.0.4.ebuild: + Sparc stable, Bug #260995, which see for discussion. + + 10 May 2009; Alexey Shvetsov gromacs-4.0.4.ebuild, + +files/gromacs-4.0.4-sparc-cyclecounter.patch: + Add upstream fix for sparc bug #260995 + +*gromacs-4.0.4 (20 Apr 2009) + + 20 Apr 2009; Alexey Shvetsov + +files/gromacs-4.0.4-configure-gfortran.patch, metadata.xml, + -gromacs-4.0.ebuild, -gromacs-4.0.2.ebuild, +gromacs-4.0.4.ebuild: + Add new gromacs 4.0.4 + + 08 Mar 2009; Markus Meier gromacs-4.0.3.ebuild: + amd64/x86 stable, bug #260995 + + 22 Jan 2009; Jeff Gardner +gromacs-4.0.3.ebuild: + Latest version. + +*gromacs-4.0.2 (04 Jan 2009) + + 04 Jan 2009; Jeff Gardner +gromacs-4.0.2.ebuild: + Latest version, thanks to Alexxy for the prod :) + +*gromacs-4.0 (12 Oct 2008) + + 12 Oct 2008; Jeff Gardner +gromacs-4.0.ebuild: + Latest version, closing bug #241474 thanks to Alexey Shvetsov + + 06 Oct 2008; Jeff Gardner ChangeLog, Manifest: + Fixing changelog to reflect addition of gromacs-3.3.3.ebuild + +*gromacs-3.3.3 (06 Oct 2008) + + 06 Oct 2008; Jeff Gardner +gromacs-3.3.3.ebuild: + Latest stable version, thanks to Alexey Shvetsov, closing bug #193532 + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + + 27 Jun 2008; Ulrich Mueller gromacs-3.3.1-r1.ebuild: + Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. + + 23 Jun 2008; Jeff Gardner + -files/gromacs-alpha-axp_asm.patch, -files/gromacs-ppc64-altivec.patch, + -gromacs-3.2.1-r1.ebuild, gromacs-3.3.1-r1.ebuild: + Moving disco manpage to g_disco, fixing bug 210083. + + 03 Jun 2008; Jeff Gardner gromacs-3.3.1-r1.ebuild: + No altivec patching with this gromacs version. Thanks to Maik Nijhuis in + bug #224773. + + 13 Jun 2007; Raúl Porcel gromacs-3.3.1-r1.ebuild: + Modify the ebuild so it compiles on alpha and mark stable wrt #168182 + + 17 Mar 2007; Steve Dibb gromacs-3.3.1-r1.ebuild: + amd64 stable, bug 168182 + + 11 Mar 2007; Sven Wegener gromacs-3.3.1-r1.ebuild: + Properly indent src_compile, thanks to ferringb. + + 08 Mar 2007; Jason Wever gromacs-3.3.1-r1.ebuild: + Stable on SPARC wrt bug #168182. + + 07 Mar 2007; Jeff Gardner gromacs-3.3.1-r1.ebuild: + Fix up the demo script so the xterms stay open. + + 24 Feb 2007; Raúl Porcel gromacs-3.3.1-r1.ebuild: + x86 stable wrt bug 168182 + + 23 Feb 2007; Markus Rothe gromacs-3.3.1-r1.ebuild: + Stable on ppc64; bug #168182 + + 07 Jan 2007; Danny van Dyk -gromacs-3.2.1.ebuild, + -gromacs-3.3.ebuild, -gromacs-3.3.1.ebuild: + QA: Removed unused versions. + + 20 Dec 2006; Jeff Gardner gromacs-3.3.1-r1.ebuild: + Small fix of DEPEND + + 20 Dec 2006; Jeff Gardner ChangeLog: + Many thanks to Rene Meier, Shvetsov Alexey Mathias Weigt, dawe, and Mike + Hlavac for their contributions to gromacs-3.3.1-r1. + +*gromacs-3.3.1-r1 (17 Dec 2006) + + 17 Dec 2006; Jeff Gardner +gromacs-3.3.1-r1.ebuild: + Fixup to address bugs 135146 118421 and 147614. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*gromacs-3.3.1 (08 Aug 2006) + + 08 Aug 2006; Markus Dittrich +gromacs-3.3.1.ebuild: + Version bump. Ebuild now inherits the fortran.eclass and forces + the use of g77 since gfortran is presently missing some of the + fortran intrinsics needed by gromacs. See bug #141672. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 25 Jun 2006; Donnie Berkholz ; gromacs-3.2.1.ebuild, + gromacs-3.2.1-r1.ebuild, gromacs-3.3.ebuild: + (#116346) Change xml2 USE flag to xml. + + 07 May 2006; Markus Rothe gromacs-3.2.1-r1.ebuild: + Stable on ppc64; bug #89969 + +*gromacs-3.3 (14 Oct 2005) + + 14 Oct 2005; Donnie Berkholz ; +gromacs-3.3.ebuild: + (#109184) Bump. Main change in ebuild is adding a check for fftw built w/ + mpi if trying to build w/ mpi. One of the more interesting upstream changes + is the addition of x86-64 and ia64 assembly. + + 05 Aug 2005; +files/gromacs-ppc64-altivec.patch, + gromacs-3.2.1-r1.ebuild: + Added patch back as binary due to metatags. Made sure patch only applies when ppc64 && altivec + +*gromacs-3.2.1-r1 (04 Aug 2005) + + 04 Aug 2005; +files/gromacs-ppc64-altivec.patch, + +gromacs-3.2.1-r1.ebuild: + Added ppc64 support and altivec support + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +gromacs-3.2.1.ebuild: + Moved from app-sci/gromacs to sci-chemistry/gromacs. + + 06 Jun 2004; Danny van Dyk gromacs-3.2.1.ebuild: + Marked stable on amd64. + + 22 Apr 2004; Donnie Berkholz ; + -files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild, + -gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild: + Mark 3.2.1 stable on x86. Remove old versions. + + 22 Apr 2004; Donnie Berkholz ; + gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild: + Add app-shells/tcsh to dependencies (#48691). + + 22 Apr 2004; Danny van Dyk gromacs-3.2.1.ebuild: + marked ~amd64 + +*gromacs-3.2.1 (02 Apr 2004) + + 02 Apr 2004; Donnie Berkholz ; gromacs-3.2.1.ebuild: + Version bump, closes #44377. + +*gromacs-3.2 (29 Feb 2004) + + 29 Feb 2004; Donnie Berkholz ; gromacs-3.2.ebuild, + files/gromacs-3.2-all-static-fix.patch: + Version bump. New xml2 USE flag. + +*gromacs-3.1.4-r2 (28 Feb 2004) + + 28 Feb 2004; Donnie Berkholz ; + gromacs-3.1.4-r2.ebuild: + Closing bug #42989 by installing binaries to /usr/bin. Also discovered libs + needed to be installed to /usr/lib. Enabled assembly for Alphas too, if any + Alpha user ever tries this. + + 04 Oct 2003; Donnie Berkholz ; gromacs-3.1.3.ebuild, + gromacs-3.1.4.ebuild: + Pulling old versions. + + 04 Oct 2003; Donnie Berkholz ; + gromacs-3.1.4-r1.ebuild: + Fixing fftw dep. Won't compile against fftw-3 yet, in part because it looks + for fftw3.h instead of fftw.h, and in part because MPI doesn't work in fftw-3 + yet. + +*gromacs-3.1.4-r1 (23 Mar 2003) + + 23 Mar 2003; George Shapovalov gromacs-3.1.4-r1.ebuild : + added mpi support, lam-mpi is the only working implementation at the moment. + !IMPORTANT!: + Since portage cannot at present check whether optional dependencies of dependencies were turned on, + please check yourself that gromacs and fftw have identical mpi setting. + Generally USE="mpi" emerge gromacs should work fine if you did not install fftw previously (with + different mpi off for example). + +*gromacs-3.1.4 (08 Nov 2002) + + 08 Nov 2002; George Shapovalov gromacs-3.1.4.ebuild, files/digest-gromacs-3.1.4 : + + new version. + !!!IMPORTANT!!! + I changed --prefix to point to /usr for FHS compliance. + Now the binaries and the libs are getting installed into + /usr/i686-pc-linux-gnu/{bin,lib} correspondingly and the data into /usr/share/gromacs-${PV} + This seems to fit well in the existing direcory structure and does not conflict with gcc. + +*gromacs-3.1.3 (27 Apr 2002) + + 27 Apr 2002; George Shapovalov all_files : + + initial release. diff --git a/sci-chemistry/gsim/ChangeLog b/sci-chemistry/gsim/ChangeLog deleted file mode 100644 index 5af07906..00000000 --- a/sci-chemistry/gsim/ChangeLog +++ /dev/null @@ -1,55 +0,0 @@ -# ChangeLog for sci-chemistry/gsim -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gsim/ChangeLog,v 1.13 2015/04/07 14:37:16 jlec Exp $ - - 20 Feb 2015; Justin Lecher -gsim-0.20.1.ebuild, - -gsim-21.0.ebuild: - Drop old - -*gsim-21.3 (09 Nov 2013) - - 09 Nov 2013; Justin Lecher +gsim-21.3.ebuild, - +files/gsim-21.3-build.conf.patch: - Vesion Bump - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - -*gsim-21.0 (06 Mar 2013) - - 06 Mar 2013; Justin Lecher +gsim-21.0.ebuild, - +files/gsim-21.0-build.conf.patch: - Version Bump, seems to fix segf #412303 - - 02 Mar 2013; Markos Chandras gsim-0.20.1.ebuild: - Move Qt dependencies to the new category - - 27 Feb 2013; Justin Lecher gsim-0.20.1.ebuild: - Add missing dep on virtual/pkgconfig - - 19 Feb 2013; Justin Lecher -files/0.19.1-build.conf.patch, - -gsim-0.19.1.ebuild, gsim-0.20.1.ebuild, metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; - drop old - - 21 May 2012; Justin Lecher gsim-0.19.1.ebuild, - gsim-0.20.1.ebuild: - Add missing dep, move to EAPI=4 - -*gsim-0.20.1 (31 Aug 2011) - - 31 Aug 2011; Justin Lecher +files/0.20.1-build.conf.patch, - +gsim-0.20.1.ebuild, metadata.xml: - Version Bump - - 10 Apr 2011; Torsten Veller gsim-0.19.1.ebuild: - Add missing die: || "..." -> || die "..." - - 03 Nov 2010; Justin Lecher gsim-0.19.1.ebuild: - QA - quoting - -*gsim-0.19.1 (03 Nov 2010) - - 03 Nov 2010; Justin Lecher - +files/0.19.1-build.conf.patch, +gsim-0.19.1.ebuild, +metadata.xml: - New Addition, imported from sci opverlay diff --git a/sci-chemistry/gsim/ChangeLog-2015 b/sci-chemistry/gsim/ChangeLog-2015 new file mode 100644 index 00000000..5af07906 --- /dev/null +++ b/sci-chemistry/gsim/ChangeLog-2015 @@ -0,0 +1,55 @@ +# ChangeLog for sci-chemistry/gsim +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gsim/ChangeLog,v 1.13 2015/04/07 14:37:16 jlec Exp $ + + 20 Feb 2015; Justin Lecher -gsim-0.20.1.ebuild, + -gsim-21.0.ebuild: + Drop old + +*gsim-21.3 (09 Nov 2013) + + 09 Nov 2013; Justin Lecher +gsim-21.3.ebuild, + +files/gsim-21.3-build.conf.patch: + Vesion Bump + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + +*gsim-21.0 (06 Mar 2013) + + 06 Mar 2013; Justin Lecher +gsim-21.0.ebuild, + +files/gsim-21.0-build.conf.patch: + Version Bump, seems to fix segf #412303 + + 02 Mar 2013; Markos Chandras gsim-0.20.1.ebuild: + Move Qt dependencies to the new category + + 27 Feb 2013; Justin Lecher gsim-0.20.1.ebuild: + Add missing dep on virtual/pkgconfig + + 19 Feb 2013; Justin Lecher -files/0.19.1-build.conf.patch, + -gsim-0.19.1.ebuild, gsim-0.20.1.ebuild, metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; + drop old + + 21 May 2012; Justin Lecher gsim-0.19.1.ebuild, + gsim-0.20.1.ebuild: + Add missing dep, move to EAPI=4 + +*gsim-0.20.1 (31 Aug 2011) + + 31 Aug 2011; Justin Lecher +files/0.20.1-build.conf.patch, + +gsim-0.20.1.ebuild, metadata.xml: + Version Bump + + 10 Apr 2011; Torsten Veller gsim-0.19.1.ebuild: + Add missing die: || "..." -> || die "..." + + 03 Nov 2010; Justin Lecher gsim-0.19.1.ebuild: + QA - quoting + +*gsim-0.19.1 (03 Nov 2010) + + 03 Nov 2010; Justin Lecher + +files/0.19.1-build.conf.patch, +gsim-0.19.1.ebuild, +metadata.xml: + New Addition, imported from sci opverlay diff --git a/sci-chemistry/gtk-gamess/ChangeLog b/sci-chemistry/gtk-gamess/ChangeLog deleted file mode 100644 index c7e0e062..00000000 --- a/sci-chemistry/gtk-gamess/ChangeLog +++ /dev/null @@ -1,39 +0,0 @@ -# ChangeLog for sci-chemistry/gtk-gamess -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gtk-gamess/ChangeLog,v 1.9 2015/01/17 20:14:03 mrueg Exp $ - - 17 Jan 2015; Manuel Rüger gtk-gamess-2.00.ebuild: - Add ~amd64 keyword. Bump to EAPI=5. - - 04 May 2012; Jeff Horelick gtk-gamess-2.00.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: - Shortend DESCRIPTION to fit ebuild writing guidelines - - 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: - Correct Slots for gtk 3 introduction to tree - - 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: - Correct Slots for gtk 3 introduction to tree - - 23 Feb 2009; Joseph Jezak gtk-gamess-2.00.ebuild: - Marked ~ppc for bug #211786. - - 10 Oct 2008; Diego Pettenò gtk-gamess-2.00.ebuild: - Fix build dependencies. - - 11 May 2008; Christian Faulhammer - gtk-gamess-2.00.ebuild: - revert stable KEYWORDS because the tarball is restricted and old ones won't - be available from upstream. Requested by markusle by mail - - 03 Jul 2007; Christian Faulhammer - gtk-gamess-2.00.ebuild: - stable x86, bug 183881 - -*gtk-gamess-2.00 (18 Jan 2007) - - 18 Jan 2007; Jeff Gardner +metadata.xml, - +gtk-gamess-2.00.ebuild: - Initial import of gtk-gamess-2.0 diff --git a/sci-chemistry/gtk-gamess/ChangeLog-2015 b/sci-chemistry/gtk-gamess/ChangeLog-2015 new file mode 100644 index 00000000..c7e0e062 --- /dev/null +++ b/sci-chemistry/gtk-gamess/ChangeLog-2015 @@ -0,0 +1,39 @@ +# ChangeLog for sci-chemistry/gtk-gamess +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gtk-gamess/ChangeLog,v 1.9 2015/01/17 20:14:03 mrueg Exp $ + + 17 Jan 2015; Manuel Rüger gtk-gamess-2.00.ebuild: + Add ~amd64 keyword. Bump to EAPI=5. + + 04 May 2012; Jeff Horelick gtk-gamess-2.00.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: + Shortend DESCRIPTION to fit ebuild writing guidelines + + 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: + Correct Slots for gtk 3 introduction to tree + + 02 Mar 2011; Justin Lecher gtk-gamess-2.00.ebuild: + Correct Slots for gtk 3 introduction to tree + + 23 Feb 2009; Joseph Jezak gtk-gamess-2.00.ebuild: + Marked ~ppc for bug #211786. + + 10 Oct 2008; Diego Pettenò gtk-gamess-2.00.ebuild: + Fix build dependencies. + + 11 May 2008; Christian Faulhammer + gtk-gamess-2.00.ebuild: + revert stable KEYWORDS because the tarball is restricted and old ones won't + be available from upstream. Requested by markusle by mail + + 03 Jul 2007; Christian Faulhammer + gtk-gamess-2.00.ebuild: + stable x86, bug 183881 + +*gtk-gamess-2.00 (18 Jan 2007) + + 18 Jan 2007; Jeff Gardner +metadata.xml, + +gtk-gamess-2.00.ebuild: + Initial import of gtk-gamess-2.0 diff --git a/sci-chemistry/hollow/ChangeLog b/sci-chemistry/hollow/ChangeLog deleted file mode 100644 index dce3e17a..00000000 --- a/sci-chemistry/hollow/ChangeLog +++ /dev/null @@ -1,25 +0,0 @@ -# ChangeLog for sci-chemistry/hollow -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/hollow/ChangeLog,v 1.4 2015/03/21 14:47:39 jlec Exp $ - - 21 Mar 2015; Justin Lecher -hollow-1.1.ebuild, - -hollow-1.2.ebuild, hollow-1.2-r1.ebuild: - use esvn_clean; clean old - -*hollow-1.2-r1 (24 Oct 2014) - - 24 Oct 2014; Justin Lecher +hollow-1.2-r1.ebuild, - metadata.xml: - Bump to new python eclasses - -*hollow-1.2 (03 Nov 2011) - - 03 Nov 2011; Justin Lecher +hollow-1.2.ebuild, - metadata.xml: - Version Bump - -*hollow-1.1 (28 Oct 2010) - - 28 Oct 2010; Justin Lecher +hollow-1.1.ebuild, - +metadata.xml: - New addition diff --git a/sci-chemistry/hollow/ChangeLog-2015 b/sci-chemistry/hollow/ChangeLog-2015 new file mode 100644 index 00000000..dce3e17a --- /dev/null +++ b/sci-chemistry/hollow/ChangeLog-2015 @@ -0,0 +1,25 @@ +# ChangeLog for sci-chemistry/hollow +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/hollow/ChangeLog,v 1.4 2015/03/21 14:47:39 jlec Exp $ + + 21 Mar 2015; Justin Lecher -hollow-1.1.ebuild, + -hollow-1.2.ebuild, hollow-1.2-r1.ebuild: + use esvn_clean; clean old + +*hollow-1.2-r1 (24 Oct 2014) + + 24 Oct 2014; Justin Lecher +hollow-1.2-r1.ebuild, + metadata.xml: + Bump to new python eclasses + +*hollow-1.2 (03 Nov 2011) + + 03 Nov 2011; Justin Lecher +hollow-1.2.ebuild, + metadata.xml: + Version Bump + +*hollow-1.1 (28 Oct 2010) + + 28 Oct 2010; Justin Lecher +hollow-1.1.ebuild, + +metadata.xml: + New addition diff --git a/sci-chemistry/icm-browser/ChangeLog b/sci-chemistry/icm-browser/ChangeLog deleted file mode 100644 index 4ce12022..00000000 --- a/sci-chemistry/icm-browser/ChangeLog +++ /dev/null @@ -1,38 +0,0 @@ -# ChangeLog for sci-chemistry/icm-browser -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/icm-browser/ChangeLog,v 1.8 2015/06/14 18:54:38 ulm Exp $ - - 14 Jun 2015; Ulrich Müller icm-browser-3.6.1i.ebuild: - [QA] Remove emul-linux-x86-* from dependencies. - - 16 Oct 2014; Pacho Ramos icm-browser-3.6.1i.ebuild: - Support multilib providers for deps. Bump to EAPI=5. - - 07 Sep 2014; Ulrich Müller icm-browser-3.6.1i.ebuild: - Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. - - 12 Jul 2011; Alexey Shvetsov icm-browser-3.6.1i.ebuild, - +files/icm-browser.xpm, -files/icm-browser.png: - fix bug #370917 - -*icm-browser-3.6.1i (21 May 2010) - - 21 May 2010; Alexey Shvetsov - -icm-browser-3.6.1h.ebuild, +icm-browser-3.6.1i.ebuild: - Version bump - - 09 Mar 2010; Jonathan Callen icm-browser-3.6.1h.ebuild: - QA: When not using an absolute path, you MUST NOT use a file extension - (.png, .svg, or .xpm) on the icon name for make_desktop_entry - -*icm-browser-3.6.1h (14 Feb 2010) - - 14 Feb 2010; Alexey Shvetsov - -icm-browser-3.6.1g.ebuild, +icm-browser-3.6.1h.ebuild: - Version bump - -*icm-browser-3.6.1g (05 Nov 2009) - - 05 Nov 2009; Alexey Shvetsov +files/90icm-browser, - +icm-browser-3.6.1g.ebuild, +files/icm-browser.png, +metadata.xml: - Initial import diff --git a/sci-chemistry/icm-browser/ChangeLog-2015 b/sci-chemistry/icm-browser/ChangeLog-2015 new file mode 100644 index 00000000..4ce12022 --- /dev/null +++ b/sci-chemistry/icm-browser/ChangeLog-2015 @@ -0,0 +1,38 @@ +# ChangeLog for sci-chemistry/icm-browser +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/icm-browser/ChangeLog,v 1.8 2015/06/14 18:54:38 ulm Exp $ + + 14 Jun 2015; Ulrich Müller icm-browser-3.6.1i.ebuild: + [QA] Remove emul-linux-x86-* from dependencies. + + 16 Oct 2014; Pacho Ramos icm-browser-3.6.1i.ebuild: + Support multilib providers for deps. Bump to EAPI=5. + + 07 Sep 2014; Ulrich Müller icm-browser-3.6.1i.ebuild: + Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. + + 12 Jul 2011; Alexey Shvetsov icm-browser-3.6.1i.ebuild, + +files/icm-browser.xpm, -files/icm-browser.png: + fix bug #370917 + +*icm-browser-3.6.1i (21 May 2010) + + 21 May 2010; Alexey Shvetsov + -icm-browser-3.6.1h.ebuild, +icm-browser-3.6.1i.ebuild: + Version bump + + 09 Mar 2010; Jonathan Callen icm-browser-3.6.1h.ebuild: + QA: When not using an absolute path, you MUST NOT use a file extension + (.png, .svg, or .xpm) on the icon name for make_desktop_entry + +*icm-browser-3.6.1h (14 Feb 2010) + + 14 Feb 2010; Alexey Shvetsov + -icm-browser-3.6.1g.ebuild, +icm-browser-3.6.1h.ebuild: + Version bump + +*icm-browser-3.6.1g (05 Nov 2009) + + 05 Nov 2009; Alexey Shvetsov +files/90icm-browser, + +icm-browser-3.6.1g.ebuild, +files/icm-browser.png, +metadata.xml: + Initial import diff --git a/sci-chemistry/icm/ChangeLog b/sci-chemistry/icm/ChangeLog deleted file mode 100644 index cebcf34b..00000000 --- a/sci-chemistry/icm/ChangeLog +++ /dev/null @@ -1,85 +0,0 @@ -# ChangeLog for sci-chemistry/icm -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/icm/ChangeLog,v 1.18 2015/06/14 18:06:29 ulm Exp $ - - 14 Jun 2015; Ulrich Müller icm-3.7.2e.ebuild, - icm-3.7.3b.ebuild: - [QA] Remove emul-linux-x86-* from dependencies. - - 15 Oct 2014; Pacho Ramos icm-3.7.2e.ebuild, - icm-3.7.3b.ebuild: - Support multilib providers for deps. Bump to EAPI=5. - - 07 Sep 2014; Ulrich Müller icm-3.7.2e.ebuild, - icm-3.7.3b.ebuild: - Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. - - 18 Jun 2014; Michał Górny icm-3.7.2e.ebuild, - icm-3.7.3b.ebuild: - Update dependencies to require guaranteed EAPI=5 or multilib ebuilds, bug - #513718. - - 01 Aug 2013; Samuli Suominen icm-3.7.2e.ebuild, - icm-3.7.3b.ebuild: - Fix libjpeg.so.62 dependency. - -*icm-3.7.3b (07 Jul 2013) - - 07 Jul 2013; Alexey Shvetsov +icm-3.7.3b.ebuild, - -icm-3.7.2d.ebuild: - Version bump - - 21 Apr 2013; Michał Górny icm-3.7.2d.ebuild, - icm-3.7.2e.ebuild: - Support multilib libraries alternatively to emul-linux-x86-xlibs. - -*icm-3.7.2e (20 Feb 2013) - - 20 Feb 2013; Alexey Shvetsov +icm-3.7.2e.ebuild, - -icm-3.7.2b.ebuild, -icm-3.7.2c.ebuild: - Update version and clean up old - -*icm-3.7.2d (19 Oct 2012) - - 19 Oct 2012; Alexey Shvetsov +icm-3.7.2d.ebuild, - icm-3.7.2c.ebuild: - [sci-chemistry/icm] Version bump - -*icm-3.7.2c (27 Feb 2012) - - 27 Feb 2012; Alexey Shvetsov +icm-3.7.2c.ebuild: - Version bump - - 05 Feb 2012; Mike Frysinger icm-3.7.2b.ebuild: - Move to new unpacker eclass for unpack_makeself. - - 10 Oct 2011; Samuli Suominen icm-3.7.2b.ebuild: - Replace removed media-libs/tiff-compat:3 depend with =media-libs/tiff-3* - -*icm-3.7.2b (12 Jul 2011) - - 12 Jul 2011; Alexey Shvetsov -icm-3.6.1i.ebuild, - +icm-3.7.2b.ebuild, +files/icm.xpm, -files/icm.png, metadata.xml: - Version bump. Also fix to bugs #370917 #372159 - -*icm-3.6.1i (21 May 2010) - - 21 May 2010; Alexey Shvetsov -icm-3.6.1h.ebuild, - +icm-3.6.1i.ebuild: - Version bump - - 09 Mar 2010; Jonathan Callen icm-3.6.1h.ebuild: - QA: When not using an absolute path, you MUST NOT use a file extension - (.png, .svg, or .xpm) on the icon name for make_desktop_entry - -*icm-3.6.1h (14 Feb 2010) - - 14 Feb 2010; Alexey Shvetsov -icm-3.6.1g.ebuild, - +icm-3.6.1h.ebuild: - Version bump - -*icm-3.6.1g (05 Nov 2009) - - 05 Nov 2009; Alexey Shvetsov +files/90icm, - +icm-3.6.1g.ebuild, +files/icm.png, +metadata.xml: - Initial import diff --git a/sci-chemistry/icm/ChangeLog-2015 b/sci-chemistry/icm/ChangeLog-2015 new file mode 100644 index 00000000..cebcf34b --- /dev/null +++ b/sci-chemistry/icm/ChangeLog-2015 @@ -0,0 +1,85 @@ +# ChangeLog for sci-chemistry/icm +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/icm/ChangeLog,v 1.18 2015/06/14 18:06:29 ulm Exp $ + + 14 Jun 2015; Ulrich Müller icm-3.7.2e.ebuild, + icm-3.7.3b.ebuild: + [QA] Remove emul-linux-x86-* from dependencies. + + 15 Oct 2014; Pacho Ramos icm-3.7.2e.ebuild, + icm-3.7.3b.ebuild: + Support multilib providers for deps. Bump to EAPI=5. + + 07 Sep 2014; Ulrich Müller icm-3.7.2e.ebuild, + icm-3.7.3b.ebuild: + Replace emul-linux-x86-compat dependency by virtual/libstdc++, bug 522218. + + 18 Jun 2014; Michał Górny icm-3.7.2e.ebuild, + icm-3.7.3b.ebuild: + Update dependencies to require guaranteed EAPI=5 or multilib ebuilds, bug + #513718. + + 01 Aug 2013; Samuli Suominen icm-3.7.2e.ebuild, + icm-3.7.3b.ebuild: + Fix libjpeg.so.62 dependency. + +*icm-3.7.3b (07 Jul 2013) + + 07 Jul 2013; Alexey Shvetsov +icm-3.7.3b.ebuild, + -icm-3.7.2d.ebuild: + Version bump + + 21 Apr 2013; Michał Górny icm-3.7.2d.ebuild, + icm-3.7.2e.ebuild: + Support multilib libraries alternatively to emul-linux-x86-xlibs. + +*icm-3.7.2e (20 Feb 2013) + + 20 Feb 2013; Alexey Shvetsov +icm-3.7.2e.ebuild, + -icm-3.7.2b.ebuild, -icm-3.7.2c.ebuild: + Update version and clean up old + +*icm-3.7.2d (19 Oct 2012) + + 19 Oct 2012; Alexey Shvetsov +icm-3.7.2d.ebuild, + icm-3.7.2c.ebuild: + [sci-chemistry/icm] Version bump + +*icm-3.7.2c (27 Feb 2012) + + 27 Feb 2012; Alexey Shvetsov +icm-3.7.2c.ebuild: + Version bump + + 05 Feb 2012; Mike Frysinger icm-3.7.2b.ebuild: + Move to new unpacker eclass for unpack_makeself. + + 10 Oct 2011; Samuli Suominen icm-3.7.2b.ebuild: + Replace removed media-libs/tiff-compat:3 depend with =media-libs/tiff-3* + +*icm-3.7.2b (12 Jul 2011) + + 12 Jul 2011; Alexey Shvetsov -icm-3.6.1i.ebuild, + +icm-3.7.2b.ebuild, +files/icm.xpm, -files/icm.png, metadata.xml: + Version bump. Also fix to bugs #370917 #372159 + +*icm-3.6.1i (21 May 2010) + + 21 May 2010; Alexey Shvetsov -icm-3.6.1h.ebuild, + +icm-3.6.1i.ebuild: + Version bump + + 09 Mar 2010; Jonathan Callen icm-3.6.1h.ebuild: + QA: When not using an absolute path, you MUST NOT use a file extension + (.png, .svg, or .xpm) on the icon name for make_desktop_entry + +*icm-3.6.1h (14 Feb 2010) + + 14 Feb 2010; Alexey Shvetsov -icm-3.6.1g.ebuild, + +icm-3.6.1h.ebuild: + Version bump + +*icm-3.6.1g (05 Nov 2009) + + 05 Nov 2009; Alexey Shvetsov +files/90icm, + +icm-3.6.1g.ebuild, +files/icm.png, +metadata.xml: + Initial import diff --git a/sci-chemistry/imosflm/ChangeLog b/sci-chemistry/imosflm/ChangeLog deleted file mode 100644 index 7e3e9d20..00000000 --- a/sci-chemistry/imosflm/ChangeLog +++ /dev/null @@ -1,38 +0,0 @@ -# ChangeLog for sci-chemistry/imosflm -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/imosflm/ChangeLog,v 1.20 2015/08/07 09:45:18 jlec Exp $ - - 07 Aug 2015; Justin Lecher -imosflm-1.0.5.ebuild: - Drop old - - 07 Aug 2015; Agostino Sarubbo imosflm-1.0.7-r1.ebuild: - Stable for x86, wrt bug #543916 - - 07 Aug 2015; Agostino Sarubbo imosflm-1.0.7-r1.ebuild: - Stable for amd64, wrt bug #543916 - - 20 Mar 2015; Justin Lecher -imosflm-1.0.7.ebuild, - imosflm-1.0.5.ebuild, imosflm-1.0.7-r1.ebuild, metadata.xml: - Fix tcl/tk slotting;drop old; Bump EAPI - -*imosflm-1.0.7-r1 (08 Apr 2014) - - 08 Apr 2014; Samuli Suominen - +files/1.0.7-libpng16.patch, +imosflm-1.0.7-r1.ebuild: - Fix broken embedded .png file for libpng16 wrt #467036 by Johan Hattne. The - patch has been applied also in upstream. - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Switch to sci-chemistry herd - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 06 Jul 2012; Justin Lecher imosflm-1.0.7.ebuild: - Fix version of mosflm dependency - -*imosflm-1.0.7 (05 Jul 2012) - - 05 Jul 2012; Justin Lecher imosflm-1.0.5.ebuild, - +imosflm-1.0.7.ebuild: - Version Bump diff --git a/sci-chemistry/imosflm/ChangeLog-2015 b/sci-chemistry/imosflm/ChangeLog-2015 new file mode 100644 index 00000000..7e3e9d20 --- /dev/null +++ b/sci-chemistry/imosflm/ChangeLog-2015 @@ -0,0 +1,38 @@ +# ChangeLog for sci-chemistry/imosflm +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/imosflm/ChangeLog,v 1.20 2015/08/07 09:45:18 jlec Exp $ + + 07 Aug 2015; Justin Lecher -imosflm-1.0.5.ebuild: + Drop old + + 07 Aug 2015; Agostino Sarubbo imosflm-1.0.7-r1.ebuild: + Stable for x86, wrt bug #543916 + + 07 Aug 2015; Agostino Sarubbo imosflm-1.0.7-r1.ebuild: + Stable for amd64, wrt bug #543916 + + 20 Mar 2015; Justin Lecher -imosflm-1.0.7.ebuild, + imosflm-1.0.5.ebuild, imosflm-1.0.7-r1.ebuild, metadata.xml: + Fix tcl/tk slotting;drop old; Bump EAPI + +*imosflm-1.0.7-r1 (08 Apr 2014) + + 08 Apr 2014; Samuli Suominen + +files/1.0.7-libpng16.patch, +imosflm-1.0.7-r1.ebuild: + Fix broken embedded .png file for libpng16 wrt #467036 by Johan Hattne. The + patch has been applied also in upstream. + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Switch to sci-chemistry herd + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 06 Jul 2012; Justin Lecher imosflm-1.0.7.ebuild: + Fix version of mosflm dependency + +*imosflm-1.0.7 (05 Jul 2012) + + 05 Jul 2012; Justin Lecher imosflm-1.0.5.ebuild, + +imosflm-1.0.7.ebuild: + Version Bump diff --git a/sci-chemistry/jmol/ChangeLog b/sci-chemistry/jmol/ChangeLog deleted file mode 100644 index 5294bc6e..00000000 --- a/sci-chemistry/jmol/ChangeLog +++ /dev/null @@ -1,79 +0,0 @@ -# ChangeLog for sci-chemistry/jmol -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/jmol/ChangeLog,v 1.17 2014/08/06 19:01:49 creffett Exp $ - -*jmol-12.0.45-r1 (06 Aug 2014) -*jmol-12.2.27-r1 (06 Aug 2014) - - 06 Aug 2014; Chris Reffett +jmol-12.0.45-r1.ebuild, - +jmol-12.2.27-r1.ebuild, -jmol-12.0.45.ebuild, -jmol-12.2.27.ebuild: - [QA] EAPI/revision bump, drop old - - 09 Aug 2013; Justin Lecher -jmol-11.0.3-r1.ebuild, - jmol-12.0.45.ebuild, jmol-12.2.27.ebuild, metadata.xml: - Straigthen out ebuild style - - 21 Jun 2012; Jeff Gardner jmol-12.2.27.ebuild: - Add --build-only to saxon, fix bug 422757 thanks to Diego Elio Petteno - - 31 May 2012; Jeff Gardner jmol-12.2.27.ebuild: - Make client-only the default - -*jmol-12.2.27 (31 May 2012) - - 31 May 2012; Jeff Gardner +jmol-12.2.27.ebuild, - +files/jmol-12.2.27-nointl.patch: - Latest version - - 15 Feb 2012; Kacper Kowalik jmol-11.0.3-r1.ebuild: - Fix SRC_URI - - 26 Jan 2012; Justin Lecher jmol-11.0.3-r1.ebuild, - jmol-12.0.45.ebuild, -files/selfSignedCertificate.store: - Mirror binary file and remove it from FILESDIR, #373263 - -*jmol-12.0.45 (28 Jun 2011) - - 28 Jun 2011; Jeff Gardner - +files/12.0.45/jmol-manifest.patch, +files/12.0.45/jmol-nointl.patch, - +jmol-12.0.45.ebuild: - Newest Jmol - - 05 Oct 2008; Petteri Räty jmol-11.0.3-r1.ebuild: - Add slot deps. - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - - 15 Apr 2008; Donnie Berkholz ; - jmol-11.0.3-r1.ebuild: - Fix conditional webapp to not pull in webapp-config when it's unneeded. - - 31 Dec 2007; Jeff Gardner ChangeLog: - Fixing my email address. - - 02 Sep 2007; jmol-11.0.3-r1.ebuild: - Fix conditional code moving netscape.jar wrt bug #191032 - - 05 Jul 2007; Jeff Gardner jmol-11.0.3-r1.ebuild: - Protecting netscape.jar from removal on amd64. - - 22 Jun 2007; Jeff Gardner jmol-11.0.3-r1.ebuild: - Removing ~amd64 for jmol-11.0.3-r1 because the bundled netscape.jar is still - required on this arch. - -*jmol-11.0.3-r1 (22 Jun 2007) - - 22 Jun 2007; Vlastimil Babka jmol-11.0.3.ebuild, - +jmol-11.0.3-r1.ebuild: - Revbump for java-related fixes - install jars we've built and not the - bundled ones, don't absorb dependencies' classes, depend only on what's - actually needed, use java dolauncher instead of supplied one. Keyword ~x86. - -*jmol-11.0.3 (15 Jun 2007) - - 15 Jun 2007; Jeff Gardner - +files/jmol-11.0.3-manifest.patch, +files/jmol-11.0.3-nointl.patch, - +files/caffeine.xyz, +files/index.html, - +files/selfSignedCertificate.store, +jmol-11.0.3.ebuild: - Initial import of jmol-11.0.3. diff --git a/sci-chemistry/jmol/ChangeLog-2015 b/sci-chemistry/jmol/ChangeLog-2015 new file mode 100644 index 00000000..5294bc6e --- /dev/null +++ b/sci-chemistry/jmol/ChangeLog-2015 @@ -0,0 +1,79 @@ +# ChangeLog for sci-chemistry/jmol +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/jmol/ChangeLog,v 1.17 2014/08/06 19:01:49 creffett Exp $ + +*jmol-12.0.45-r1 (06 Aug 2014) +*jmol-12.2.27-r1 (06 Aug 2014) + + 06 Aug 2014; Chris Reffett +jmol-12.0.45-r1.ebuild, + +jmol-12.2.27-r1.ebuild, -jmol-12.0.45.ebuild, -jmol-12.2.27.ebuild: + [QA] EAPI/revision bump, drop old + + 09 Aug 2013; Justin Lecher -jmol-11.0.3-r1.ebuild, + jmol-12.0.45.ebuild, jmol-12.2.27.ebuild, metadata.xml: + Straigthen out ebuild style + + 21 Jun 2012; Jeff Gardner jmol-12.2.27.ebuild: + Add --build-only to saxon, fix bug 422757 thanks to Diego Elio Petteno + + 31 May 2012; Jeff Gardner jmol-12.2.27.ebuild: + Make client-only the default + +*jmol-12.2.27 (31 May 2012) + + 31 May 2012; Jeff Gardner +jmol-12.2.27.ebuild, + +files/jmol-12.2.27-nointl.patch: + Latest version + + 15 Feb 2012; Kacper Kowalik jmol-11.0.3-r1.ebuild: + Fix SRC_URI + + 26 Jan 2012; Justin Lecher jmol-11.0.3-r1.ebuild, + jmol-12.0.45.ebuild, -files/selfSignedCertificate.store: + Mirror binary file and remove it from FILESDIR, #373263 + +*jmol-12.0.45 (28 Jun 2011) + + 28 Jun 2011; Jeff Gardner + +files/12.0.45/jmol-manifest.patch, +files/12.0.45/jmol-nointl.patch, + +jmol-12.0.45.ebuild: + Newest Jmol + + 05 Oct 2008; Petteri Räty jmol-11.0.3-r1.ebuild: + Add slot deps. + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + + 15 Apr 2008; Donnie Berkholz ; + jmol-11.0.3-r1.ebuild: + Fix conditional webapp to not pull in webapp-config when it's unneeded. + + 31 Dec 2007; Jeff Gardner ChangeLog: + Fixing my email address. + + 02 Sep 2007; jmol-11.0.3-r1.ebuild: + Fix conditional code moving netscape.jar wrt bug #191032 + + 05 Jul 2007; Jeff Gardner jmol-11.0.3-r1.ebuild: + Protecting netscape.jar from removal on amd64. + + 22 Jun 2007; Jeff Gardner jmol-11.0.3-r1.ebuild: + Removing ~amd64 for jmol-11.0.3-r1 because the bundled netscape.jar is still + required on this arch. + +*jmol-11.0.3-r1 (22 Jun 2007) + + 22 Jun 2007; Vlastimil Babka jmol-11.0.3.ebuild, + +jmol-11.0.3-r1.ebuild: + Revbump for java-related fixes - install jars we've built and not the + bundled ones, don't absorb dependencies' classes, depend only on what's + actually needed, use java dolauncher instead of supplied one. Keyword ~x86. + +*jmol-11.0.3 (15 Jun 2007) + + 15 Jun 2007; Jeff Gardner + +files/jmol-11.0.3-manifest.patch, +files/jmol-11.0.3-nointl.patch, + +files/caffeine.xyz, +files/index.html, + +files/selfSignedCertificate.store, +jmol-11.0.3.ebuild: + Initial import of jmol-11.0.3. diff --git a/sci-chemistry/ksdssp/ChangeLog b/sci-chemistry/ksdssp/ChangeLog deleted file mode 100644 index 10d89367..00000000 --- a/sci-chemistry/ksdssp/ChangeLog +++ /dev/null @@ -1,21 +0,0 @@ -# ChangeLog for sci-chemistry/ksdssp -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ChangeLog,v 1.3 2013/06/19 04:07:07 bicatali Exp $ - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - -*ksdssp-040728-r1 (18 Oct 2012) - - 18 Oct 2012; Justin Lecher ksdssp-040728.ebuild, - +ksdssp-040728-r1.ebuild, metadata.xml: - Some fix related completness of installation (man, etc) - -*ksdssp-040728 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher (jlec) +ksdssp-040728.ebuild, - +metadata.xml: - ksdssp is an open source implementation of the algorithm described in - Wolfgang Kabsch and Christian Sander, "Dictionary of Protein Secondary - Structure: Pattern Recognition of Hydrogen-Bonded and Geometrical - Features," Biopolymers, 22, 2577-2637 (1983). diff --git a/sci-chemistry/ksdssp/ChangeLog-2015 b/sci-chemistry/ksdssp/ChangeLog-2015 new file mode 100644 index 00000000..10d89367 --- /dev/null +++ b/sci-chemistry/ksdssp/ChangeLog-2015 @@ -0,0 +1,21 @@ +# ChangeLog for sci-chemistry/ksdssp +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ChangeLog,v 1.3 2013/06/19 04:07:07 bicatali Exp $ + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + +*ksdssp-040728-r1 (18 Oct 2012) + + 18 Oct 2012; Justin Lecher ksdssp-040728.ebuild, + +ksdssp-040728-r1.ebuild, metadata.xml: + Some fix related completness of installation (man, etc) + +*ksdssp-040728 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) +ksdssp-040728.ebuild, + +metadata.xml: + ksdssp is an open source implementation of the algorithm described in + Wolfgang Kabsch and Christian Sander, "Dictionary of Protein Secondary + Structure: Pattern Recognition of Hydrogen-Bonded and Geometrical + Features," Biopolymers, 22, 2577-2637 (1983). diff --git a/sci-chemistry/makecif/ChangeLog b/sci-chemistry/makecif/ChangeLog deleted file mode 100644 index 5cdf3c4d..00000000 --- a/sci-chemistry/makecif/ChangeLog +++ /dev/null @@ -1,48 +0,0 @@ -# ChangeLog for sci-chemistry/makecif -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/makecif/ChangeLog,v 1.13 2013/02/03 17:56:31 ago Exp $ - - 03 Feb 2013; Agostino Sarubbo makecif-5.6.6-r1.ebuild: - Stable for ppc, wrt bug #454310 - - 19 Oct 2012; Justin Lecher makecif-5.6.6.ebuild, - makecif-5.6.6-r1.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Nov 2011; Justin Lecher makecif-5.6.6-r1.ebuild: - keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123 - -*makecif-5.6.6-r1 (29 Jun 2011) - - 29 Jun 2011; Justin Lecher makecif-5.6.6.ebuild, - +makecif-5.6.6-r1.ebuild, metadata.xml: - Fix blocking of refmac-5.6, EAPI bump - - 21 Jun 2011; Justin Lecher makecif-5.6.6.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher makecif-5.6.6.ebuild: - Added fortran-2.eclass support - - 16 Jan 2011; Kacper Kowalik makecif-5.6.6.ebuild: - marked ~ppc wrt #303931 - - 01 Jan 2011; Markos Chandras makecif-5.6.6.ebuild: - Stable on amd64 wrt bug #349586 - - 25 Dec 2010; Thomas Kahle makecif-5.6.6.ebuild: - x86 stable per bug 349586 - - 16 Dec 2010; Justin Lecher makecif-5.6.6.ebuild: - Added missing toolchain-funcs.eclass - - - 16 Dec 2010; Justin Lecher makecif-5.6.6.ebuild: - Removal of fortran.eclass, #348851 - -*makecif-5.6.6 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher +files/5.6.6-makefile.patch, - +makecif-5.6.6.ebuild, +metadata.xml: - New addition, unbundled from sci-chemistry/refmac diff --git a/sci-chemistry/makecif/ChangeLog-2015 b/sci-chemistry/makecif/ChangeLog-2015 new file mode 100644 index 00000000..5cdf3c4d --- /dev/null +++ b/sci-chemistry/makecif/ChangeLog-2015 @@ -0,0 +1,48 @@ +# ChangeLog for sci-chemistry/makecif +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/makecif/ChangeLog,v 1.13 2013/02/03 17:56:31 ago Exp $ + + 03 Feb 2013; Agostino Sarubbo makecif-5.6.6-r1.ebuild: + Stable for ppc, wrt bug #454310 + + 19 Oct 2012; Justin Lecher makecif-5.6.6.ebuild, + makecif-5.6.6-r1.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Nov 2011; Justin Lecher makecif-5.6.6-r1.ebuild: + keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123 + +*makecif-5.6.6-r1 (29 Jun 2011) + + 29 Jun 2011; Justin Lecher makecif-5.6.6.ebuild, + +makecif-5.6.6-r1.ebuild, metadata.xml: + Fix blocking of refmac-5.6, EAPI bump + + 21 Jun 2011; Justin Lecher makecif-5.6.6.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher makecif-5.6.6.ebuild: + Added fortran-2.eclass support + + 16 Jan 2011; Kacper Kowalik makecif-5.6.6.ebuild: + marked ~ppc wrt #303931 + + 01 Jan 2011; Markos Chandras makecif-5.6.6.ebuild: + Stable on amd64 wrt bug #349586 + + 25 Dec 2010; Thomas Kahle makecif-5.6.6.ebuild: + x86 stable per bug 349586 + + 16 Dec 2010; Justin Lecher makecif-5.6.6.ebuild: + Added missing toolchain-funcs.eclass + + + 16 Dec 2010; Justin Lecher makecif-5.6.6.ebuild: + Removal of fortran.eclass, #348851 + +*makecif-5.6.6 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher +files/5.6.6-makefile.patch, + +makecif-5.6.6.ebuild, +metadata.xml: + New addition, unbundled from sci-chemistry/refmac diff --git a/sci-chemistry/mars/ChangeLog b/sci-chemistry/mars/ChangeLog deleted file mode 100644 index 022bd663..00000000 --- a/sci-chemistry/mars/ChangeLog +++ /dev/null @@ -1,30 +0,0 @@ -# ChangeLog for sci-chemistry/mars -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mars/ChangeLog,v 1.8 2013/06/19 04:08:53 bicatali Exp $ - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 20 May 2013; Justin Lecher -mars-1.1.3.ebuild, - mars-1.2.ebuild, metadata.xml: - Drop old, Change license to a-r-r and RESTRICT=mirror, #470784 - -*mars-1.2 (06 Sep 2012) - - 06 Sep 2012; Justin Lecher +mars-1.2.ebuild: - Version Bump - - 24 Jul 2012; Justin Lecher mars-1.1.3.ebuild, metadata.xml: - Use QA_PREBUILT for binary packages - - 28 Feb 2010; Justin Lecher mars-1.1.3.ebuild: - Changed RDEPEND sci-chemistry/psipred to sci-biology/psipred - - 27 Feb 2010; Justin Lecher mars-1.1.3.ebuild: - Missing sci-chemistry/psipred tp DEPEND added - -*mars-1.1.3 (24 Feb 2010) - - 24 Feb 2010; Justin Lecher +mars-1.1.3.ebuild, - +metadata.xml: - Imported from sci overlay diff --git a/sci-chemistry/mars/ChangeLog-2015 b/sci-chemistry/mars/ChangeLog-2015 new file mode 100644 index 00000000..022bd663 --- /dev/null +++ b/sci-chemistry/mars/ChangeLog-2015 @@ -0,0 +1,30 @@ +# ChangeLog for sci-chemistry/mars +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mars/ChangeLog,v 1.8 2013/06/19 04:08:53 bicatali Exp $ + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 20 May 2013; Justin Lecher -mars-1.1.3.ebuild, + mars-1.2.ebuild, metadata.xml: + Drop old, Change license to a-r-r and RESTRICT=mirror, #470784 + +*mars-1.2 (06 Sep 2012) + + 06 Sep 2012; Justin Lecher +mars-1.2.ebuild: + Version Bump + + 24 Jul 2012; Justin Lecher mars-1.1.3.ebuild, metadata.xml: + Use QA_PREBUILT for binary packages + + 28 Feb 2010; Justin Lecher mars-1.1.3.ebuild: + Changed RDEPEND sci-chemistry/psipred to sci-biology/psipred + + 27 Feb 2010; Justin Lecher mars-1.1.3.ebuild: + Missing sci-chemistry/psipred tp DEPEND added + +*mars-1.1.3 (24 Feb 2010) + + 24 Feb 2010; Justin Lecher +mars-1.1.3.ebuild, + +metadata.xml: + Imported from sci overlay diff --git a/sci-chemistry/massxpert/ChangeLog b/sci-chemistry/massxpert/ChangeLog deleted file mode 100644 index 0ee28328..00000000 --- a/sci-chemistry/massxpert/ChangeLog +++ /dev/null @@ -1,68 +0,0 @@ -# ChangeLog for sci-chemistry/massxpert -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/massxpert/ChangeLog,v 1.15 2014/08/10 20:28:39 slyfox Exp $ - - 10 Aug 2014; Sergei Trofimovich massxpert-2.0.5.ebuild: - QA: drop trailing '.' from DESCRIPTION - -*massxpert-3.4.0 (06 Jan 2014) - - 06 Jan 2014; Justin Lecher -massxpert-1.7.6.ebuild, - massxpert-2.0.5.ebuild, +massxpert-3.4.0.ebuild, - -files/massxpert-1.7.6-gcc43.patch, +files/massxpert-3.4.0-gentoo.patch, - metadata.xml: - Drop old; punt base.eclass - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 02 Mar 2013; Markos Chandras massxpert-1.7.6.ebuild, - massxpert-2.0.5.ebuild: - Move Qt dependencies to the new category - - 26 Jul 2012; Michael Palimaka massxpert-1.7.6.ebuild: - Add missing slot dependencies on Qt. - - 02 Mar 2011; Justin Lecher massxpert-1.7.6.ebuild: - Correct Slots for gtk 3 introduction to tree - - 04 Oct 2009; Samuli Suominen - massxpert-2.0.5.ebuild: - Replace filtering of -Wl,--as-needed with function from flag-o-matic - eclass. - -*massxpert-2.0.5 (19 Sep 2009) - - 19 Sep 2009; Dominik Kapusta -massxpert-2.0.4.ebuild, - -files/massxpert-2.0.4-gentoo.patch, +massxpert-2.0.5.ebuild, - +files/massxpert-2.0.5-gentoo.patch: - Version bump - 2.0.5 bugfix release, remove 2.0.4 - -*massxpert-2.0.4 (19 Sep 2009) - - 19 Sep 2009; Alex Alexander +massxpert-2.0.4.ebuild, - +files/massxpert-2.0.4-gentoo.patch: - version bump, bug 284344 - - 18 Sep 2009; Alex Alexander massxpert-1.7.6.ebuild: - updated Qt deps, switched to EAPI 2 - - 20 Jul 2008; Peter Alfredsen massxpert-1.7.6.ebuild: - Keyword x86, fix to build with gcc-4.3 and fixup build-deps. - - 08 Jun 2008; Jeff Gardner massxpert-1.7.6.ebuild: - Change LICENSE to GPL-3 - -*massxpert-1.7.6 (08 Jun 2008) - - 08 Jun 2008; Jeff Gardner +massxpert-1.7.6.ebuild: - New version replaces old broken one. - - 31 Dec 2007; Jeff Gardner - +files/digest-massxpert-1.6.8, ChangeLog, Manifest: - Fixing my email address. - -*massxpert-1.6.7 (30 Dec 2007) - - 30 Dec 2007; +metadata.xml, +massxpert-1.6.7.ebuild: - Initial import from the science overlay. diff --git a/sci-chemistry/massxpert/ChangeLog-2015 b/sci-chemistry/massxpert/ChangeLog-2015 new file mode 100644 index 00000000..0ee28328 --- /dev/null +++ b/sci-chemistry/massxpert/ChangeLog-2015 @@ -0,0 +1,68 @@ +# ChangeLog for sci-chemistry/massxpert +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/massxpert/ChangeLog,v 1.15 2014/08/10 20:28:39 slyfox Exp $ + + 10 Aug 2014; Sergei Trofimovich massxpert-2.0.5.ebuild: + QA: drop trailing '.' from DESCRIPTION + +*massxpert-3.4.0 (06 Jan 2014) + + 06 Jan 2014; Justin Lecher -massxpert-1.7.6.ebuild, + massxpert-2.0.5.ebuild, +massxpert-3.4.0.ebuild, + -files/massxpert-1.7.6-gcc43.patch, +files/massxpert-3.4.0-gentoo.patch, + metadata.xml: + Drop old; punt base.eclass + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 02 Mar 2013; Markos Chandras massxpert-1.7.6.ebuild, + massxpert-2.0.5.ebuild: + Move Qt dependencies to the new category + + 26 Jul 2012; Michael Palimaka massxpert-1.7.6.ebuild: + Add missing slot dependencies on Qt. + + 02 Mar 2011; Justin Lecher massxpert-1.7.6.ebuild: + Correct Slots for gtk 3 introduction to tree + + 04 Oct 2009; Samuli Suominen + massxpert-2.0.5.ebuild: + Replace filtering of -Wl,--as-needed with function from flag-o-matic + eclass. + +*massxpert-2.0.5 (19 Sep 2009) + + 19 Sep 2009; Dominik Kapusta -massxpert-2.0.4.ebuild, + -files/massxpert-2.0.4-gentoo.patch, +massxpert-2.0.5.ebuild, + +files/massxpert-2.0.5-gentoo.patch: + Version bump - 2.0.5 bugfix release, remove 2.0.4 + +*massxpert-2.0.4 (19 Sep 2009) + + 19 Sep 2009; Alex Alexander +massxpert-2.0.4.ebuild, + +files/massxpert-2.0.4-gentoo.patch: + version bump, bug 284344 + + 18 Sep 2009; Alex Alexander massxpert-1.7.6.ebuild: + updated Qt deps, switched to EAPI 2 + + 20 Jul 2008; Peter Alfredsen massxpert-1.7.6.ebuild: + Keyword x86, fix to build with gcc-4.3 and fixup build-deps. + + 08 Jun 2008; Jeff Gardner massxpert-1.7.6.ebuild: + Change LICENSE to GPL-3 + +*massxpert-1.7.6 (08 Jun 2008) + + 08 Jun 2008; Jeff Gardner +massxpert-1.7.6.ebuild: + New version replaces old broken one. + + 31 Dec 2007; Jeff Gardner + +files/digest-massxpert-1.6.8, ChangeLog, Manifest: + Fixing my email address. + +*massxpert-1.6.7 (30 Dec 2007) + + 30 Dec 2007; +metadata.xml, +massxpert-1.6.7.ebuild: + Initial import from the science overlay. diff --git a/sci-chemistry/mdanalysis/ChangeLog b/sci-chemistry/mdanalysis/ChangeLog deleted file mode 100644 index 0fac30b2..00000000 --- a/sci-chemistry/mdanalysis/ChangeLog +++ /dev/null @@ -1,12 +0,0 @@ -# ChangeLog for sci-chemistry/mdanalysis -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mdanalysis/ChangeLog,v 1.2 2015/04/08 18:22:14 mgorny Exp $ - - 08 Apr 2015; Michał Górny mdanalysis-0.7.7.ebuild: - Drop old Python implementations - -*mdanalysis-0.7.7 (04 Jul 2013) - - 04 Jul 2013; Justin Lecher +mdanalysis-0.7.7.ebuild, - +metadata.xml: - New addition written by me diff --git a/sci-chemistry/mdanalysis/ChangeLog-2015 b/sci-chemistry/mdanalysis/ChangeLog-2015 new file mode 100644 index 00000000..0fac30b2 --- /dev/null +++ b/sci-chemistry/mdanalysis/ChangeLog-2015 @@ -0,0 +1,12 @@ +# ChangeLog for sci-chemistry/mdanalysis +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mdanalysis/ChangeLog,v 1.2 2015/04/08 18:22:14 mgorny Exp $ + + 08 Apr 2015; Michał Górny mdanalysis-0.7.7.ebuild: + Drop old Python implementations + +*mdanalysis-0.7.7 (04 Jul 2013) + + 04 Jul 2013; Justin Lecher +mdanalysis-0.7.7.ebuild, + +metadata.xml: + New addition written by me diff --git a/sci-chemistry/mead/ChangeLog b/sci-chemistry/mead/ChangeLog deleted file mode 100644 index fc75f94f..00000000 --- a/sci-chemistry/mead/ChangeLog +++ /dev/null @@ -1,42 +0,0 @@ -# ChangeLog for sci-chemistry/mead -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mead/ChangeLog,v 1.8 2010/04/19 17:49:23 jlec Exp $ - -*mead-2.2.7-r1 (19 Apr 2010) - - 19 Apr 2010; Justin Lecher mead-2.2.7.ebuild, - +mead-2.2.7-r1.ebuild, +files/mead-2.2.7-respect-flags.patch, - -files/respect-cflags.patch: - respect LDFLAGS, #316059 - - 19 Apr 2010; Justin Lecher -mead-2.2.5.ebuild, - mead-2.2.7.ebuild: - Removed old version, removed python support, as numeric is gone - -*mead-2.2.7 (15 Feb 2009) - - 15 Feb 2009; Ryan Hill - +files/mead-2.2.7-gcc43.patch, +files/mead-2.2.7-respect-cflags.patch, - +mead-2.2.7.ebuild: - Version bump and gcc-4.3 fix by Joel on bug #250423. - - 22 Feb 2007; Piotr Jaroszyński - files/digest-mead-2.2.5, Manifest: - Transition to Manifest2. - - 01 Oct 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer so it goes to all of the sci-chemistry team. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*mead-2.2.5 (17 Dec 2005) - - 17 Dec 2005; Donnie Berkholz ; - +files/respect-cflags.patch, +metadata.xml, +mead-2.2.5.ebuild: - New electrostatic potential package: Macroscopic Electrostatics with Atomic - Detail. - diff --git a/sci-chemistry/mead/ChangeLog-2015 b/sci-chemistry/mead/ChangeLog-2015 new file mode 100644 index 00000000..fc75f94f --- /dev/null +++ b/sci-chemistry/mead/ChangeLog-2015 @@ -0,0 +1,42 @@ +# ChangeLog for sci-chemistry/mead +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mead/ChangeLog,v 1.8 2010/04/19 17:49:23 jlec Exp $ + +*mead-2.2.7-r1 (19 Apr 2010) + + 19 Apr 2010; Justin Lecher mead-2.2.7.ebuild, + +mead-2.2.7-r1.ebuild, +files/mead-2.2.7-respect-flags.patch, + -files/respect-cflags.patch: + respect LDFLAGS, #316059 + + 19 Apr 2010; Justin Lecher -mead-2.2.5.ebuild, + mead-2.2.7.ebuild: + Removed old version, removed python support, as numeric is gone + +*mead-2.2.7 (15 Feb 2009) + + 15 Feb 2009; Ryan Hill + +files/mead-2.2.7-gcc43.patch, +files/mead-2.2.7-respect-cflags.patch, + +mead-2.2.7.ebuild: + Version bump and gcc-4.3 fix by Joel on bug #250423. + + 22 Feb 2007; Piotr Jaroszyński + files/digest-mead-2.2.5, Manifest: + Transition to Manifest2. + + 01 Oct 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer so it goes to all of the sci-chemistry team. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*mead-2.2.5 (17 Dec 2005) + + 17 Dec 2005; Donnie Berkholz ; + +files/respect-cflags.patch, +metadata.xml, +mead-2.2.5.ebuild: + New electrostatic potential package: Macroscopic Electrostatics with Atomic + Detail. + diff --git a/sci-chemistry/mm-align/ChangeLog b/sci-chemistry/mm-align/ChangeLog deleted file mode 100644 index b04abcf7..00000000 --- a/sci-chemistry/mm-align/ChangeLog +++ /dev/null @@ -1,14 +0,0 @@ -# ChangeLog for sci-chemistry/mm-align -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mm-align/ChangeLog,v 1.2 2013/05/20 16:19:05 jlec Exp $ - - 20 May 2013; Justin Lecher mm-align-20120321.ebuild, - metadata.xml: - Fix license, #470786 - -*mm-align-20120321 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +mm-align-20120321.ebuild, - +files/CMakeLists.txt, +metadata.xml: - New addition, written by me - diff --git a/sci-chemistry/mm-align/ChangeLog-2015 b/sci-chemistry/mm-align/ChangeLog-2015 new file mode 100644 index 00000000..b04abcf7 --- /dev/null +++ b/sci-chemistry/mm-align/ChangeLog-2015 @@ -0,0 +1,14 @@ +# ChangeLog for sci-chemistry/mm-align +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mm-align/ChangeLog,v 1.2 2013/05/20 16:19:05 jlec Exp $ + + 20 May 2013; Justin Lecher mm-align-20120321.ebuild, + metadata.xml: + Fix license, #470786 + +*mm-align-20120321 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +mm-align-20120321.ebuild, + +files/CMakeLists.txt, +metadata.xml: + New addition, written by me + diff --git a/sci-chemistry/molden/ChangeLog b/sci-chemistry/molden/ChangeLog deleted file mode 100644 index a21dfc72..00000000 --- a/sci-chemistry/molden/ChangeLog +++ /dev/null @@ -1,253 +0,0 @@ -# ChangeLog for sci-chemistry/molden -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.48 2013/04/11 18:51:34 ulm Exp $ - - 11 Apr 2013; Ulrich Müller molden-4.8-r2.ebuild, - molden-5.0.ebuild: - Fix LICENSE, see . - - 04 Feb 2013; Justin Lecher molden-4.8-r2.ebuild, - molden-5.0.ebuild: - Always depend on virtual/glu, #455384 - - 30 Jan 2013; Justin Lecher molden-4.8-r2.ebuild, - molden-5.0.ebuild, metadata.xml: - Add virtual/glu to deps, #454690 - - 19 Oct 2012; Justin Lecher molden-4.8-r2.ebuild, - molden-5.0.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 15 Jul 2012; Justin Lecher -molden-4.7.ebuild, - -files/molden-4.7-glibc-2.11.patch, -files/molden-4.7-ldflags.patch: - Drop old - - 15 Jul 2012; Raúl Porcel molden-4.7.ebuild, - molden-4.8-r2.ebuild, molden-5.0.ebuild: - Drop alpha/ia64 keywords - - 26 Jun 2012; Agostino Sarubbo molden-4.8-r2.ebuild: - Stable for amd64, wrt bug #423175 - - 25 Jun 2012; Jeff Horelick molden-4.8-r2.ebuild: - marked x86 per bug 423175 - - 23 Jun 2012; Justin Lecher molden-5.0.ebuild, - +files/molden-5.0-overflow.patch: - Add missing patch - -*molden-5.0 (23 Jun 2012) -*molden-4.8-r2 (23 Jun 2012) - - 23 Jun 2012; Justin Lecher -molden-4.7-r1.ebuild, - -molden-4.8.ebuild, -molden-4.8-r1.ebuild, +molden-4.8-r2.ebuild, - files/molden-4.8-overflow.patch, +molden-5.0.ebuild, - +files/molden-5.0-ambfor.patch, metadata.xml: - Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures, - #358917, #423015; drop old - - 21 Jun 2011; Justin Lecher molden-4.7.ebuild, - molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher molden-4.7.ebuild, - molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: - Added fortran-2.eclass support - - 16 Dec 2010; Justin Lecher molden-4.7.ebuild, - molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: - Removal of fortran.eclass, #348851 - - 16 Sep 2010; Tomáš Chvátal molden-4.7.ebuild, - molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: - virtual/glut -> media-libs/glut - - 20 Jul 2010; Justin Lecher molden-4.7-r1.ebuild, - molden-4.8-r1.ebuild: - Added gccmakedep to DEPEND, #329093 - -*molden-4.8-r1 (24 Jun 2010) -*molden-4.7-r1 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher +molden-4.7-r1.ebuild, - +files/molden-4.7-glibc-2.11.patch, +files/molden-4.7-implicit-dec.patch, - +files/molden-4.7-ldflags.patch, +molden-4.8-r1.ebuild, - files/molden-4.8-ldflags.patch: - Fix for glibc-2.11, fix for bug #315595 - -*molden-4.8 (26 Feb 2010) - - 26 Feb 2010; Markus Dittrich - -files/molden-3.9-fixMakefile.patch, -molden-4.4.ebuild, - -files/molden-4.4-gfortran-gentoo.patch, -molden-4.6.ebuild, - -files/molden-4.6-gfortran.patch, +molden-4.8.ebuild, - +files/molden-4.8-ambfor.patch, +files/molden-4.8-ldflags.patch, - +files/molden-4.8-overflow.patch: - Version bump (fixes #285220, #270941). Removed old ebuild. - - 18 Jan 2010; Raúl Porcel molden-4.7.ebuild: - alpha/ia64/x86 stable - - 23 Sep 2009; Patrick Lauer molden-4.4.ebuild, - molden-4.6.ebuild, molden-4.7.ebuild: - Remove virtual/libc - - 29 May 2009; Donnie Berkholz ; molden-4.7.ebuild: - Stable on amd64. - - 28 May 2009; Donnie Berkholz ; molden-4.7.ebuild: - The build system requires ex, which comes along with vim. - -*molden-4.7 (02 Jan 2009) - - 02 Jan 2009; Marcus D. Hanwell +molden-4.7.ebuild: - Version bump. - - 31 Dec 2007; Jeff Gardner ChangeLog: - Fixing my email address - - 12 Aug 2007; -molden-4.3.ebuild: - Removed old version. - - 11 Aug 2007; Steve Dibb molden-4.4.ebuild: - amd64 stable, bug 187124 - - 30 Jul 2007; Raúl Porcel molden-4.4.ebuild: - alpha/ia64/x86 stable wrt #187124 - - 30 Jul 2007; Jeff Gardner molden-4.6.ebuild: - Change logic in src_install wrt bug #187073, thanks to Benj FitzPatrick. - - 22 Jul 2007; Donnie Berkholz ; molden-4.3.ebuild, - molden-4.4.ebuild, molden-4.6.ebuild: - Drop virtual/x11 references. - -*molden-4.6 (23 Jun 2007) - - 23 Jun 2007; Markus Dittrich +molden-4.6.ebuild, +files/molden-4.6-gfortran.patch: - Version bump. - - 13 Mar 2007; Danny van Dyk molden-4.3.ebuild: - QA: which -> type -P - -*molden-4.4 (03 Oct 2006) - - 03 Oct 2006; Markus Dittrich - +files/molden-4.4-gfortran-gentoo.patch, +molden-4.4.ebuild: - Version bump (fixes bug #138642). Thanks to je_fro - for his ebuild and patch. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 08 Apr 2006; Donnie Berkholz ; -molden-3.9.ebuild, - -molden-4.0.ebuild, -molden-4.1.ebuild: - Pull old versions, everyone's stabilized on 4.3. - - 08 Apr 2006; Simon Stelling molden-4.3.ebuild: - stable on amd64 - - 10 Mar 2006; Aron Griffis molden-4.3.ebuild: - Mark 4.3 stable on ia64 - - 08 Feb 2006; Aron Griffis molden-4.3.ebuild: - Mark 4.3 stable on alpha - - 20 Jan 2006; Joshua Jackson molden-4.3.ebuild: - Stable on x86 for bug #119378 - - 18 Jan 2006; Donnie Berkholz ; molden-4.3.ebuild: - Fix dependencies for modular X. - - 18 Jan 2006; Donnie Berkholz ; molden-4.3.ebuild: - Parallel build sporadically dies. - - 14 May 2005; Bryan Østergaard molden-4.3.ebuild: - ~ia64 keyword. - - 25 Apr 2005; Bryan Østergaard molden-4.3.ebuild: - ~alpha keyword. - -*molden-4.3 (05 Feb 2005) - - 05 Feb 2005; Donnie Berkholz ; +molden-4.3.ebuild: - (#79047) New version, supports gromacs file format and some other stuff. - - 29 Dec 2004; Ciaran McCreesh : - Change encoding to UTF-8 for GLEP 31 compliance - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +files/molden-3.9-fixMakefile.patch, +molden-3.9.ebuild, +molden-4.0.ebuild, - +molden-4.1.ebuild: - Moved from app-sci/molden to sci-chemistry/molden. - - 23 Dec 2004; Donnie Berkholz ; molden-4.1.ebuild: - x86. - - 20 Nov 2004; Danny van Dyk molden-4.1.ebuild: - Marked ~amd64. - - 26 Oct 2004; Donnie Berkholz ; molden-3.9.ebuild, - molden-4.0.ebuild, molden-4.1.ebuild: - Move eclasses from gcc to toolchain-funcs. Get rid of ${CC} use (#68990). - - 28 Jul 2004; Donnie Berkholz ; molden-3.9.ebuild, - molden-4.0.ebuild, molden-4.1.ebuild: - Search for a fortran compiler, since gcc doesn't compile one by default - anymore (#58628). - - 27 Jul 2004; Donnie Berkholz ; molden-4.0.ebuild: - x86. - -*molden-4.1 (27 Jul 2004) - - 27 Jul 2004; Donnie Berkholz ; +molden-4.1.ebuild: - Version bump (#57960). Add virtual/libc and virtual/x11 to DEPEND. Upstream - changes include bugfixes and addition of interactive docking. - - 21 May 2004; Danny van Dyk : - Marked ~amd64. - - 15 May 2004; Danny van Dyk molden-4.0.ebuild: - Marked ~amd64. - - 05 May 2004; Bryan Østergaard molden-4.0.ebuild: - Stable on alpha. - - 21 Apr 2004; Donnie Berkholz ; molden-4.0.ebuild: - ~alpha for agriffis. - - 21 Apr 2004; Donnie Berkholz ; molden-4.0.ebuild: - Some wizardly bash replacements for sed by Aron Griffis - (#46816). - - 04 Apr 2004; Aron Griffis molden-3.9.ebuild, - molden-4.0.ebuild: - Add ia64 keywords for bug 46559 - - 13 Mar 2004; Donnie Berkholz ; : - Upstream changed the tarball. Fixing digest. - -*molden-4.0 (28 Feb 2004) - - 28 Feb 2004; Donnie Berkholz ; molden-4.0.ebuild: - Version bump. Uses 3.9 patch, so don't remove that when dropping 3.9. - - 28 Feb 2004; Donnie Berkholz ; molden-3.9.ebuild: - Add missing glut dep for opengl USE. - -*molden-3.9 (10 Nov 2003) - - 10 Nov 2003; Donnie Berkholz ; molden-3.9.ebuild, - files/molden-3.9-fixMakefile.patch: - Thanks to Rossen Apostolov on bug #33001 for - the initial ebuild, with further modifications by me. - diff --git a/sci-chemistry/molden/ChangeLog-2015 b/sci-chemistry/molden/ChangeLog-2015 new file mode 100644 index 00000000..a21dfc72 --- /dev/null +++ b/sci-chemistry/molden/ChangeLog-2015 @@ -0,0 +1,253 @@ +# ChangeLog for sci-chemistry/molden +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.48 2013/04/11 18:51:34 ulm Exp $ + + 11 Apr 2013; Ulrich Müller molden-4.8-r2.ebuild, + molden-5.0.ebuild: + Fix LICENSE, see . + + 04 Feb 2013; Justin Lecher molden-4.8-r2.ebuild, + molden-5.0.ebuild: + Always depend on virtual/glu, #455384 + + 30 Jan 2013; Justin Lecher molden-4.8-r2.ebuild, + molden-5.0.ebuild, metadata.xml: + Add virtual/glu to deps, #454690 + + 19 Oct 2012; Justin Lecher molden-4.8-r2.ebuild, + molden-5.0.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 15 Jul 2012; Justin Lecher -molden-4.7.ebuild, + -files/molden-4.7-glibc-2.11.patch, -files/molden-4.7-ldflags.patch: + Drop old + + 15 Jul 2012; Raúl Porcel molden-4.7.ebuild, + molden-4.8-r2.ebuild, molden-5.0.ebuild: + Drop alpha/ia64 keywords + + 26 Jun 2012; Agostino Sarubbo molden-4.8-r2.ebuild: + Stable for amd64, wrt bug #423175 + + 25 Jun 2012; Jeff Horelick molden-4.8-r2.ebuild: + marked x86 per bug 423175 + + 23 Jun 2012; Justin Lecher molden-5.0.ebuild, + +files/molden-5.0-overflow.patch: + Add missing patch + +*molden-5.0 (23 Jun 2012) +*molden-4.8-r2 (23 Jun 2012) + + 23 Jun 2012; Justin Lecher -molden-4.7-r1.ebuild, + -molden-4.8.ebuild, -molden-4.8-r1.ebuild, +molden-4.8-r2.ebuild, + files/molden-4.8-overflow.patch, +molden-5.0.ebuild, + +files/molden-5.0-ambfor.patch, metadata.xml: + Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures, + #358917, #423015; drop old + + 21 Jun 2011; Justin Lecher molden-4.7.ebuild, + molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher molden-4.7.ebuild, + molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: + Added fortran-2.eclass support + + 16 Dec 2010; Justin Lecher molden-4.7.ebuild, + molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: + Removal of fortran.eclass, #348851 + + 16 Sep 2010; Tomáš Chvátal molden-4.7.ebuild, + molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: + virtual/glut -> media-libs/glut + + 20 Jul 2010; Justin Lecher molden-4.7-r1.ebuild, + molden-4.8-r1.ebuild: + Added gccmakedep to DEPEND, #329093 + +*molden-4.8-r1 (24 Jun 2010) +*molden-4.7-r1 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher +molden-4.7-r1.ebuild, + +files/molden-4.7-glibc-2.11.patch, +files/molden-4.7-implicit-dec.patch, + +files/molden-4.7-ldflags.patch, +molden-4.8-r1.ebuild, + files/molden-4.8-ldflags.patch: + Fix for glibc-2.11, fix for bug #315595 + +*molden-4.8 (26 Feb 2010) + + 26 Feb 2010; Markus Dittrich + -files/molden-3.9-fixMakefile.patch, -molden-4.4.ebuild, + -files/molden-4.4-gfortran-gentoo.patch, -molden-4.6.ebuild, + -files/molden-4.6-gfortran.patch, +molden-4.8.ebuild, + +files/molden-4.8-ambfor.patch, +files/molden-4.8-ldflags.patch, + +files/molden-4.8-overflow.patch: + Version bump (fixes #285220, #270941). Removed old ebuild. + + 18 Jan 2010; Raúl Porcel molden-4.7.ebuild: + alpha/ia64/x86 stable + + 23 Sep 2009; Patrick Lauer molden-4.4.ebuild, + molden-4.6.ebuild, molden-4.7.ebuild: + Remove virtual/libc + + 29 May 2009; Donnie Berkholz ; molden-4.7.ebuild: + Stable on amd64. + + 28 May 2009; Donnie Berkholz ; molden-4.7.ebuild: + The build system requires ex, which comes along with vim. + +*molden-4.7 (02 Jan 2009) + + 02 Jan 2009; Marcus D. Hanwell +molden-4.7.ebuild: + Version bump. + + 31 Dec 2007; Jeff Gardner ChangeLog: + Fixing my email address + + 12 Aug 2007; -molden-4.3.ebuild: + Removed old version. + + 11 Aug 2007; Steve Dibb molden-4.4.ebuild: + amd64 stable, bug 187124 + + 30 Jul 2007; Raúl Porcel molden-4.4.ebuild: + alpha/ia64/x86 stable wrt #187124 + + 30 Jul 2007; Jeff Gardner molden-4.6.ebuild: + Change logic in src_install wrt bug #187073, thanks to Benj FitzPatrick. + + 22 Jul 2007; Donnie Berkholz ; molden-4.3.ebuild, + molden-4.4.ebuild, molden-4.6.ebuild: + Drop virtual/x11 references. + +*molden-4.6 (23 Jun 2007) + + 23 Jun 2007; Markus Dittrich +molden-4.6.ebuild, +files/molden-4.6-gfortran.patch: + Version bump. + + 13 Mar 2007; Danny van Dyk molden-4.3.ebuild: + QA: which -> type -P + +*molden-4.4 (03 Oct 2006) + + 03 Oct 2006; Markus Dittrich + +files/molden-4.4-gfortran-gentoo.patch, +molden-4.4.ebuild: + Version bump (fixes bug #138642). Thanks to je_fro + for his ebuild and patch. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 08 Apr 2006; Donnie Berkholz ; -molden-3.9.ebuild, + -molden-4.0.ebuild, -molden-4.1.ebuild: + Pull old versions, everyone's stabilized on 4.3. + + 08 Apr 2006; Simon Stelling molden-4.3.ebuild: + stable on amd64 + + 10 Mar 2006; Aron Griffis molden-4.3.ebuild: + Mark 4.3 stable on ia64 + + 08 Feb 2006; Aron Griffis molden-4.3.ebuild: + Mark 4.3 stable on alpha + + 20 Jan 2006; Joshua Jackson molden-4.3.ebuild: + Stable on x86 for bug #119378 + + 18 Jan 2006; Donnie Berkholz ; molden-4.3.ebuild: + Fix dependencies for modular X. + + 18 Jan 2006; Donnie Berkholz ; molden-4.3.ebuild: + Parallel build sporadically dies. + + 14 May 2005; Bryan Østergaard molden-4.3.ebuild: + ~ia64 keyword. + + 25 Apr 2005; Bryan Østergaard molden-4.3.ebuild: + ~alpha keyword. + +*molden-4.3 (05 Feb 2005) + + 05 Feb 2005; Donnie Berkholz ; +molden-4.3.ebuild: + (#79047) New version, supports gromacs file format and some other stuff. + + 29 Dec 2004; Ciaran McCreesh : + Change encoding to UTF-8 for GLEP 31 compliance + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +files/molden-3.9-fixMakefile.patch, +molden-3.9.ebuild, +molden-4.0.ebuild, + +molden-4.1.ebuild: + Moved from app-sci/molden to sci-chemistry/molden. + + 23 Dec 2004; Donnie Berkholz ; molden-4.1.ebuild: + x86. + + 20 Nov 2004; Danny van Dyk molden-4.1.ebuild: + Marked ~amd64. + + 26 Oct 2004; Donnie Berkholz ; molden-3.9.ebuild, + molden-4.0.ebuild, molden-4.1.ebuild: + Move eclasses from gcc to toolchain-funcs. Get rid of ${CC} use (#68990). + + 28 Jul 2004; Donnie Berkholz ; molden-3.9.ebuild, + molden-4.0.ebuild, molden-4.1.ebuild: + Search for a fortran compiler, since gcc doesn't compile one by default + anymore (#58628). + + 27 Jul 2004; Donnie Berkholz ; molden-4.0.ebuild: + x86. + +*molden-4.1 (27 Jul 2004) + + 27 Jul 2004; Donnie Berkholz ; +molden-4.1.ebuild: + Version bump (#57960). Add virtual/libc and virtual/x11 to DEPEND. Upstream + changes include bugfixes and addition of interactive docking. + + 21 May 2004; Danny van Dyk : + Marked ~amd64. + + 15 May 2004; Danny van Dyk molden-4.0.ebuild: + Marked ~amd64. + + 05 May 2004; Bryan Østergaard molden-4.0.ebuild: + Stable on alpha. + + 21 Apr 2004; Donnie Berkholz ; molden-4.0.ebuild: + ~alpha for agriffis. + + 21 Apr 2004; Donnie Berkholz ; molden-4.0.ebuild: + Some wizardly bash replacements for sed by Aron Griffis + (#46816). + + 04 Apr 2004; Aron Griffis molden-3.9.ebuild, + molden-4.0.ebuild: + Add ia64 keywords for bug 46559 + + 13 Mar 2004; Donnie Berkholz ; : + Upstream changed the tarball. Fixing digest. + +*molden-4.0 (28 Feb 2004) + + 28 Feb 2004; Donnie Berkholz ; molden-4.0.ebuild: + Version bump. Uses 3.9 patch, so don't remove that when dropping 3.9. + + 28 Feb 2004; Donnie Berkholz ; molden-3.9.ebuild: + Add missing glut dep for opengl USE. + +*molden-3.9 (10 Nov 2003) + + 10 Nov 2003; Donnie Berkholz ; molden-3.9.ebuild, + files/molden-3.9-fixMakefile.patch: + Thanks to Rossen Apostolov on bug #33001 for + the initial ebuild, with further modifications by me. + diff --git a/sci-chemistry/moldy/ChangeLog b/sci-chemistry/moldy/ChangeLog deleted file mode 100644 index 1aae61ae..00000000 --- a/sci-chemistry/moldy/ChangeLog +++ /dev/null @@ -1,110 +0,0 @@ -# ChangeLog for sci-chemistry/moldy -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/moldy/ChangeLog,v 1.25 2012/06/22 13:04:06 jlec Exp $ - - 22 Jun 2012; Justin Lecher moldy-2.16e-r2.ebuild: - Don't alter configure.ac needlessly to avoid autoreconf, #422871 - - 06 Feb 2012; Kacper Kowalik moldy-2.16e-r2.ebuild: - ppc stable wrt #393697 - - 18 Dec 2011; Pawel Hajdan jr moldy-2.16e-r2.ebuild: - x86 stable wrt bug #393697 - - 15 Dec 2011; Justin Lecher moldy-2.16e-r2.ebuild: - Drop upstreams CFLAGS as requested by ago - - 15 Dec 2011; Agostino Sarubbo moldy-2.16e-r2.ebuild: - Stable for AMD64, wrt bug #393697 - - 15 Dec 2011; Justin Lecher -moldy-2.16e.ebuild, - moldy-2.16e-r2.ebuild: - Keyword for amd64-linux and removed old - - 26 Jun 2011; Justin Lecher moldy-2.16e.ebuild, - -moldy-2.16e-r1.ebuild, moldy-2.16e-r2.ebuild, metadata.xml: - Straight out QA issues - -*moldy-2.16e-r2 (15 Apr 2010) - - 15 Apr 2010; Justin Lecher +files/2.16e-as-needed.patch, - +moldy-2.16e-r2.ebuild: - Install docs into correct path, #315399; Link as-needed conform; build - docs only with USE=doc, #248348 - -*moldy-2.16e-r1 (17 Feb 2010) - - 17 Feb 2010; Justin Lecher (jlec) moldy-2.16e.ebuild, - +moldy-2.16e-r1.ebuild: - import prefix changes from the overlay, moved to EAPI=3 - - 23 Sep 2009; Patrick Lauer moldy-2.16e.ebuild: - Remove virtual/libc - - 09 Jun 2008; Markus Dittrich moldy-2.16e.ebuild: - Switched virtual/tetex -> virtual/latex-base and added amd64 keyword (see - bug #222501). - - 15 May 2008; Andrey Grozin moldy-2.16e.ebuild: - Set VARTEXFONTS (bug #221921) - - 31 Jan 2008; Fabian Groffen moldy-2.16e.ebuild: - Dropped ppc-macos keyword, see you in prefix - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 18 Jan 2006; Donnie Berkholz ; moldy-2.16e.ebuild: - Fix for modular X. - - 18 Jan 2006; Donnie Berkholz ; moldy-2.16e.ebuild: - Fix SRC_URI. - - 25 May 2005; Donnie Berkholz ; moldy-2.16e.ebuild: - Fix HOMEPAGE. - - 23 Jan 2005; moldy-2.16e.ebuild: - Stable on ppc-macos. - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +moldy-2.16e.ebuild: - Moved from app-sci/moldy to sci-chemistry/moldy. - - 07 Dec 2004; moldy-2.16e.ebuild: - Added ~ppc-macos - - 01 Jul 2004; Jeremy Huddleston moldy-2.16e.ebuild: - virtual/glibc -> virtual/libc - - 18 May 2004; Mamoru KOMACHI moldy-2.16e.ebuild: - Changed app-text/tetex to virutal/tetex. - - 30 Mar 2004; Donnie Berkholz ; moldy-2.16e.ebuild: - Change x11-base/xfree dependency to virtual/x11. - - 27 Oct 2003; Patrick Kursawe moldy-2.16e.ebuild: - Fixing sandbox issue from bug 20657 - - 04 Oct 2003; Donnie Berkholz ; moldy-2.16e.ebuild: - Adding what appears to be a non-optional tetex dependency. However there are - sandbox issues at present (bug #20657). - -*moldy-2.16e (1 Feb 2002) - - 1 Feb 2002; G.Bevin ChangeLog : - - Added initial ChangeLog which should be updated whenever the package is - updated in any way. This changelog is targetted to users. This means that the - comments should well explained and written in clean English. The details about - writing correct changelogs are explained in the skel.ChangeLog file which you - can find in the root directory of the portage repository. diff --git a/sci-chemistry/moldy/ChangeLog-2015 b/sci-chemistry/moldy/ChangeLog-2015 new file mode 100644 index 00000000..1aae61ae --- /dev/null +++ b/sci-chemistry/moldy/ChangeLog-2015 @@ -0,0 +1,110 @@ +# ChangeLog for sci-chemistry/moldy +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/moldy/ChangeLog,v 1.25 2012/06/22 13:04:06 jlec Exp $ + + 22 Jun 2012; Justin Lecher moldy-2.16e-r2.ebuild: + Don't alter configure.ac needlessly to avoid autoreconf, #422871 + + 06 Feb 2012; Kacper Kowalik moldy-2.16e-r2.ebuild: + ppc stable wrt #393697 + + 18 Dec 2011; Pawel Hajdan jr moldy-2.16e-r2.ebuild: + x86 stable wrt bug #393697 + + 15 Dec 2011; Justin Lecher moldy-2.16e-r2.ebuild: + Drop upstreams CFLAGS as requested by ago + + 15 Dec 2011; Agostino Sarubbo moldy-2.16e-r2.ebuild: + Stable for AMD64, wrt bug #393697 + + 15 Dec 2011; Justin Lecher -moldy-2.16e.ebuild, + moldy-2.16e-r2.ebuild: + Keyword for amd64-linux and removed old + + 26 Jun 2011; Justin Lecher moldy-2.16e.ebuild, + -moldy-2.16e-r1.ebuild, moldy-2.16e-r2.ebuild, metadata.xml: + Straight out QA issues + +*moldy-2.16e-r2 (15 Apr 2010) + + 15 Apr 2010; Justin Lecher +files/2.16e-as-needed.patch, + +moldy-2.16e-r2.ebuild: + Install docs into correct path, #315399; Link as-needed conform; build + docs only with USE=doc, #248348 + +*moldy-2.16e-r1 (17 Feb 2010) + + 17 Feb 2010; Justin Lecher (jlec) moldy-2.16e.ebuild, + +moldy-2.16e-r1.ebuild: + import prefix changes from the overlay, moved to EAPI=3 + + 23 Sep 2009; Patrick Lauer moldy-2.16e.ebuild: + Remove virtual/libc + + 09 Jun 2008; Markus Dittrich moldy-2.16e.ebuild: + Switched virtual/tetex -> virtual/latex-base and added amd64 keyword (see + bug #222501). + + 15 May 2008; Andrey Grozin moldy-2.16e.ebuild: + Set VARTEXFONTS (bug #221921) + + 31 Jan 2008; Fabian Groffen moldy-2.16e.ebuild: + Dropped ppc-macos keyword, see you in prefix + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 18 Jan 2006; Donnie Berkholz ; moldy-2.16e.ebuild: + Fix for modular X. + + 18 Jan 2006; Donnie Berkholz ; moldy-2.16e.ebuild: + Fix SRC_URI. + + 25 May 2005; Donnie Berkholz ; moldy-2.16e.ebuild: + Fix HOMEPAGE. + + 23 Jan 2005; moldy-2.16e.ebuild: + Stable on ppc-macos. + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +moldy-2.16e.ebuild: + Moved from app-sci/moldy to sci-chemistry/moldy. + + 07 Dec 2004; moldy-2.16e.ebuild: + Added ~ppc-macos + + 01 Jul 2004; Jeremy Huddleston moldy-2.16e.ebuild: + virtual/glibc -> virtual/libc + + 18 May 2004; Mamoru KOMACHI moldy-2.16e.ebuild: + Changed app-text/tetex to virutal/tetex. + + 30 Mar 2004; Donnie Berkholz ; moldy-2.16e.ebuild: + Change x11-base/xfree dependency to virtual/x11. + + 27 Oct 2003; Patrick Kursawe moldy-2.16e.ebuild: + Fixing sandbox issue from bug 20657 + + 04 Oct 2003; Donnie Berkholz ; moldy-2.16e.ebuild: + Adding what appears to be a non-optional tetex dependency. However there are + sandbox issues at present (bug #20657). + +*moldy-2.16e (1 Feb 2002) + + 1 Feb 2002; G.Bevin ChangeLog : + + Added initial ChangeLog which should be updated whenever the package is + updated in any way. This changelog is targetted to users. This means that the + comments should well explained and written in clean English. The details about + writing correct changelogs are explained in the skel.ChangeLog file which you + can find in the root directory of the portage repository. diff --git a/sci-chemistry/molequeue/ChangeLog b/sci-chemistry/molequeue/ChangeLog deleted file mode 100644 index f942c9d1..00000000 --- a/sci-chemistry/molequeue/ChangeLog +++ /dev/null @@ -1,41 +0,0 @@ -# ChangeLog for sci-chemistry/molequeue -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molequeue/ChangeLog,v 1.8 2015/08/01 17:38:42 jlec Exp $ - - 01 Aug 2015; Justin Lecher -molequeue-0.6.1-r1.ebuild, - molequeue-0.7.1.ebuild: - Use subslots - - 08 Apr 2015; Michał Górny molequeue-0.6.1-r1.ebuild, - molequeue-0.7.1.ebuild: - Drop old Python implementations - - 16 Jan 2014; Justin Lecher molequeue-0.7.1.ebuild: - Fix usex usage - - 07 Jan 2014; Justin Lecher molequeue-0.7.1.ebuild: - Fix documentation installation - - 07 Jan 2014; Justin Lecher +molequeue-0.7.1.ebuild, - metadata.xml: - Version Bump - -*molequeue-0.7.1 (07 Jan 2014) - - 07 Jan 2014; Justin Lecher +molequeue-0.7.1.ebuild: - Version Bump - -*molequeue-0.6.1-r1 (11 Aug 2013) - - 11 Aug 2013; Justin Lecher -molequeue-0.6.1.ebuild, - +molequeue-0.6.1-r1.ebuild: - Fix double bitness in cmake file - - 18 Jul 2013; Justin Lecher molequeue-0.6.1.ebuild: - Add missing deps - -*molequeue-0.6.1 (18 Jul 2013) - - 18 Jul 2013; Justin Lecher +molequeue-0.6.1.ebuild, - +metadata.xml: - New addition written by me diff --git a/sci-chemistry/molequeue/ChangeLog-2015 b/sci-chemistry/molequeue/ChangeLog-2015 new file mode 100644 index 00000000..f942c9d1 --- /dev/null +++ b/sci-chemistry/molequeue/ChangeLog-2015 @@ -0,0 +1,41 @@ +# ChangeLog for sci-chemistry/molequeue +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molequeue/ChangeLog,v 1.8 2015/08/01 17:38:42 jlec Exp $ + + 01 Aug 2015; Justin Lecher -molequeue-0.6.1-r1.ebuild, + molequeue-0.7.1.ebuild: + Use subslots + + 08 Apr 2015; Michał Górny molequeue-0.6.1-r1.ebuild, + molequeue-0.7.1.ebuild: + Drop old Python implementations + + 16 Jan 2014; Justin Lecher molequeue-0.7.1.ebuild: + Fix usex usage + + 07 Jan 2014; Justin Lecher molequeue-0.7.1.ebuild: + Fix documentation installation + + 07 Jan 2014; Justin Lecher +molequeue-0.7.1.ebuild, + metadata.xml: + Version Bump + +*molequeue-0.7.1 (07 Jan 2014) + + 07 Jan 2014; Justin Lecher +molequeue-0.7.1.ebuild: + Version Bump + +*molequeue-0.6.1-r1 (11 Aug 2013) + + 11 Aug 2013; Justin Lecher -molequeue-0.6.1.ebuild, + +molequeue-0.6.1-r1.ebuild: + Fix double bitness in cmake file + + 18 Jul 2013; Justin Lecher molequeue-0.6.1.ebuild: + Add missing deps + +*molequeue-0.6.1 (18 Jul 2013) + + 18 Jul 2013; Justin Lecher +molequeue-0.6.1.ebuild, + +metadata.xml: + New addition written by me diff --git a/sci-chemistry/molmol/ChangeLog b/sci-chemistry/molmol/ChangeLog deleted file mode 100644 index f79c7e74..00000000 --- a/sci-chemistry/molmol/ChangeLog +++ /dev/null @@ -1,146 +0,0 @@ -# ChangeLog for sci-chemistry/molmol -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molmol/ChangeLog,v 1.37 2014/07/24 09:06:56 jlec Exp $ - - 24 Jul 2014; Justin Lecher files/wild.patch: - Fix patch to work with current stable version of patch as well, #517940 - - 23 Jul 2014; Justin Lecher molmol-2k_p2-r5.ebuild, - files/opengl.patch: - Fix for prefix - -*molmol-2k_p2-r5 (22 Jul 2014) - - 22 Jul 2014; Justin Lecher +molmol-2k_p2-r5.ebuild, - +files/opengl.patch, +files/wild.patch: - Importing latest changes from sf.net molmol for mac project - -*molmol-2k_p2-r4 (02 May 2013) - - 02 May 2013; Justin Lecher +molmol-2k_p2-r4.ebuild: - Respect AR, #468178 - - 27 Jan 2013; Justin Lecher molmol-2k_p2-r2.ebuild, - molmol-2k_p2-r3.ebuild, metadata.xml: - Add missing dep on virtual/glu, #454288 - - 24 Oct 2012; Ulrich Müller molmol-2k_p2-r2.ebuild, - molmol-2k_p2-r3.ebuild: - Update dependency after package move from x11-libs/openmotif to - x11-libs/motif. - -*molmol-2k_p2-r3 (05 Aug 2012) - - 05 Aug 2012; Justin Lecher molmol-2k_p2-r2.ebuild, - +molmol-2k_p2-r3.ebuild, +files/molmol-2k_p2-fink.patch: - Add patch from fink, enhances code style and fixes OGL bug, #429974 - - 17 Feb 2012; Justin Lecher molmol-2k_p2-r2.ebuild: - Add altenative dependency on libGLw - - 16 Nov 2011; Justin Lecher molmol-2k_p2-r2.ebuild: - Corrected Slotting of media-libs/libpng and media-libs/tiff - - 15 Oct 2011; Kacper Kowalik -molmol-2k_p2.ebuild, - molmol-2k_p2-r2.ebuild: - ppc stable wrt #373091, drop old - - 14 Sep 2011; Samuli Suominen +files/libpng15.patch, - molmol-2k_p2-r2.ebuild: - Fix building with libpng15 wrt #378341 by Diego Elio Pettenò - - 15 Jul 2011; Markus Meier molmol-2k_p2-r2.ebuild: - x86 stable, bug #373091 - - 02 Jul 2011; Markos Chandras molmol-2k_p2-r2.ebuild: - Stable on amd64 wrt bug #373091 - - 26 Jun 2011; Justin Lecher molmol-2k_p2.ebuild, - molmol-2k_p2-r2.ebuild, metadata.xml: - Straight out QA issues prior to stabilization - - 08 Nov 2010; Kacper Kowalik molmol-2k_p2.ebuild, - -molmol-2k_p2-r1.ebuild, molmol-2k_p2-r2.ebuild: - media-libs/jpeg -> virtual/jpeg. Drop old. - - 10 Oct 2010; Ulrich Mueller molmol-2k_p2.ebuild, - molmol-2k_p2-r1.ebuild, molmol-2k_p2-r2.ebuild: - Fix openmotif dependency. - - 11 May 2010; Justin Lecher files/cast.patch: - Add missing prototyp - - 23 Apr 2010; Justin Lecher molmol-2k_p2-r2.ebuild, - +files/cast.patch: - fix instance of cast from pointer to integer of different size, stolen - from fink - -*molmol-2k_p2-r2 (30 Mar 2010) - - 30 Mar 2010; Justin Lecher molmol-2k_p2-r1.ebuild, - +molmol-2k_p2-r2.ebuild, +files/ldflags.patch, +files/prefix.patch: - Respecting LDFLAGS and fixes for prefix - -*molmol-2k_p2-r1 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher (jlec) - +molmol-2k_p2-r1.ebuild: - Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me - - 18 Sep 2009; Petteri Räty molmol-2k_p2.ebuild: - Migrate to EAPI 2 in order to remove built_with_use usage. - - 27 Jun 2008; Ulrich Mueller molmol-2k_p2.ebuild: - Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. - - 22 Jul 2007; Donnie Berkholz ; molmol-2k_p2.ebuild: - Drop virtual/x11 references. - - 07 Apr 2007; Mike Frysinger molmol-2k_p2.ebuild: - Replace references to *DESTTREE vars with proper calls to the *into functions. - - 23 Oct 2006; Jeff Gardner molmol-2k_p2.ebuild: - Specify mesa in DEPEND - bug 152426 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; molmol-2k_p2.ebuild: - x86/ppc stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 20 Feb 2006; Luis Medinas molmol-2k_p2.ebuild: - Added ~amd64 keyword. - - 12 Dec 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: - Add modular X dependencies. - - 14 Jul 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: - (#99001) Parallel build broken. - - 14 Jul 2005; David Holm molmol-2k_p2.ebuild: - Added to ~ppc. - - 13 Jul 2005; Donnie Berkholz ; - files/pjf_RH9_molmol2k2.diff: - -L/usr/X11R6/lib is pointless. - - 13 Jul 2005; Donnie Berkholz ; - files/pjf_RH9_molmol2k2.diff: - Link against libXpm, not libXp. - - 13 Jul 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: - Missed one use of lib instead of get_libdir(). - -*molmol-2k_p2 (13 Jul 2005) - - 13 Jul 2005; Donnie Berkholz ; - +files/pjf_RH9_molmol2k2.diff, +metadata.xml, +molmol-2k_p2.ebuild: - Initial commit. - diff --git a/sci-chemistry/molmol/ChangeLog-2015 b/sci-chemistry/molmol/ChangeLog-2015 new file mode 100644 index 00000000..f79c7e74 --- /dev/null +++ b/sci-chemistry/molmol/ChangeLog-2015 @@ -0,0 +1,146 @@ +# ChangeLog for sci-chemistry/molmol +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molmol/ChangeLog,v 1.37 2014/07/24 09:06:56 jlec Exp $ + + 24 Jul 2014; Justin Lecher files/wild.patch: + Fix patch to work with current stable version of patch as well, #517940 + + 23 Jul 2014; Justin Lecher molmol-2k_p2-r5.ebuild, + files/opengl.patch: + Fix for prefix + +*molmol-2k_p2-r5 (22 Jul 2014) + + 22 Jul 2014; Justin Lecher +molmol-2k_p2-r5.ebuild, + +files/opengl.patch, +files/wild.patch: + Importing latest changes from sf.net molmol for mac project + +*molmol-2k_p2-r4 (02 May 2013) + + 02 May 2013; Justin Lecher +molmol-2k_p2-r4.ebuild: + Respect AR, #468178 + + 27 Jan 2013; Justin Lecher molmol-2k_p2-r2.ebuild, + molmol-2k_p2-r3.ebuild, metadata.xml: + Add missing dep on virtual/glu, #454288 + + 24 Oct 2012; Ulrich Müller molmol-2k_p2-r2.ebuild, + molmol-2k_p2-r3.ebuild: + Update dependency after package move from x11-libs/openmotif to + x11-libs/motif. + +*molmol-2k_p2-r3 (05 Aug 2012) + + 05 Aug 2012; Justin Lecher molmol-2k_p2-r2.ebuild, + +molmol-2k_p2-r3.ebuild, +files/molmol-2k_p2-fink.patch: + Add patch from fink, enhances code style and fixes OGL bug, #429974 + + 17 Feb 2012; Justin Lecher molmol-2k_p2-r2.ebuild: + Add altenative dependency on libGLw + + 16 Nov 2011; Justin Lecher molmol-2k_p2-r2.ebuild: + Corrected Slotting of media-libs/libpng and media-libs/tiff + + 15 Oct 2011; Kacper Kowalik -molmol-2k_p2.ebuild, + molmol-2k_p2-r2.ebuild: + ppc stable wrt #373091, drop old + + 14 Sep 2011; Samuli Suominen +files/libpng15.patch, + molmol-2k_p2-r2.ebuild: + Fix building with libpng15 wrt #378341 by Diego Elio Pettenò + + 15 Jul 2011; Markus Meier molmol-2k_p2-r2.ebuild: + x86 stable, bug #373091 + + 02 Jul 2011; Markos Chandras molmol-2k_p2-r2.ebuild: + Stable on amd64 wrt bug #373091 + + 26 Jun 2011; Justin Lecher molmol-2k_p2.ebuild, + molmol-2k_p2-r2.ebuild, metadata.xml: + Straight out QA issues prior to stabilization + + 08 Nov 2010; Kacper Kowalik molmol-2k_p2.ebuild, + -molmol-2k_p2-r1.ebuild, molmol-2k_p2-r2.ebuild: + media-libs/jpeg -> virtual/jpeg. Drop old. + + 10 Oct 2010; Ulrich Mueller molmol-2k_p2.ebuild, + molmol-2k_p2-r1.ebuild, molmol-2k_p2-r2.ebuild: + Fix openmotif dependency. + + 11 May 2010; Justin Lecher files/cast.patch: + Add missing prototyp + + 23 Apr 2010; Justin Lecher molmol-2k_p2-r2.ebuild, + +files/cast.patch: + fix instance of cast from pointer to integer of different size, stolen + from fink + +*molmol-2k_p2-r2 (30 Mar 2010) + + 30 Mar 2010; Justin Lecher molmol-2k_p2-r1.ebuild, + +molmol-2k_p2-r2.ebuild, +files/ldflags.patch, +files/prefix.patch: + Respecting LDFLAGS and fixes for prefix + +*molmol-2k_p2-r1 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) + +molmol-2k_p2-r1.ebuild: + Moved to EAPI=3 for PREFIX support, keyworded for *-linux, tested by me + + 18 Sep 2009; Petteri Räty molmol-2k_p2.ebuild: + Migrate to EAPI 2 in order to remove built_with_use usage. + + 27 Jun 2008; Ulrich Mueller molmol-2k_p2.ebuild: + Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. + + 22 Jul 2007; Donnie Berkholz ; molmol-2k_p2.ebuild: + Drop virtual/x11 references. + + 07 Apr 2007; Mike Frysinger molmol-2k_p2.ebuild: + Replace references to *DESTTREE vars with proper calls to the *into functions. + + 23 Oct 2006; Jeff Gardner molmol-2k_p2.ebuild: + Specify mesa in DEPEND - bug 152426 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; molmol-2k_p2.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 20 Feb 2006; Luis Medinas molmol-2k_p2.ebuild: + Added ~amd64 keyword. + + 12 Dec 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: + Add modular X dependencies. + + 14 Jul 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: + (#99001) Parallel build broken. + + 14 Jul 2005; David Holm molmol-2k_p2.ebuild: + Added to ~ppc. + + 13 Jul 2005; Donnie Berkholz ; + files/pjf_RH9_molmol2k2.diff: + -L/usr/X11R6/lib is pointless. + + 13 Jul 2005; Donnie Berkholz ; + files/pjf_RH9_molmol2k2.diff: + Link against libXpm, not libXp. + + 13 Jul 2005; Donnie Berkholz ; molmol-2k_p2.ebuild: + Missed one use of lib instead of get_libdir(). + +*molmol-2k_p2 (13 Jul 2005) + + 13 Jul 2005; Donnie Berkholz ; + +files/pjf_RH9_molmol2k2.diff, +metadata.xml, +molmol-2k_p2.ebuild: + Initial commit. + diff --git a/sci-chemistry/molrep/ChangeLog b/sci-chemistry/molrep/ChangeLog deleted file mode 100644 index 9c82b40a..00000000 --- a/sci-chemistry/molrep/ChangeLog +++ /dev/null @@ -1,103 +0,0 @@ -# ChangeLog for sci-chemistry/molrep -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/ChangeLog,v 1.22 2013/02/21 22:00:47 jlec Exp $ - - 21 Feb 2013; Justin Lecher molrep-11.0.02.ebuild, - -molrep-11.0.03.ebuild, molrep-11.0.03-r1.ebuild, metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; - drop old - - 19 Oct 2012; Justin Lecher molrep-11.0.02.ebuild, - molrep-11.0.03.ebuild, molrep-11.0.03-r1.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*molrep-11.0.03-r1 (04 Oct 2011) - - 04 Oct 2011; Justin Lecher +files/11.0.03-EOR.patch, - +molrep-11.0.03-r1.ebuild: - Fix for Molrep: input fixed model mode failure - -*molrep-11.0.03 (07 Sep 2011) - - 07 Sep 2011; Justin Lecher +molrep-11.0.03.ebuild: - Version Bump - - 02 Jul 2011; Justin Lecher molrep-11.0.02.ebuild, - metadata.xml: - Use pkg-config to detect mmdb and lapack libs - - 28 Jun 2011; Brent Baude molrep-11.0.02.ebuild: - Marking molrep-11.0.02 ppc for bug 352065 - - 21 Jun 2011; Justin Lecher molrep-11.0.02.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher molrep-11.0.02.ebuild: - Added fortran-2.eclass support - - 31 Jan 2011; Christian Faulhammer - molrep-11.0.02.ebuild: - stable x86, bug 352065 - - 20 Jan 2011; Markos Chandras molrep-11.0.02.ebuild: - Stable on amd64 wrt bug #352056 - - 18 Jan 2011; Justin Lecher -molrep-10.2.38.ebuild, - -molrep-11.0.00_p3.ebuild: - removed old - - 16 Jan 2011; Kacper Kowalik molrep-11.0.02.ebuild: - marked ~ppc wrt #303931 - -*molrep-11.0.02 (25 Nov 2010) - - 25 Nov 2010; Justin Lecher -molrep-10.2.35.ebuild, - -molrep-11.0.00-r1.ebuild, -molrep-11.0.00_p1.ebuild, - -molrep-11.0.00_p2.ebuild, +molrep-11.0.02.ebuild: - Version Bump and cleaned old - -*molrep-11.0.00_p3 (23 Jul 2010) - - 23 Jul 2010; Justin Lecher +molrep-11.0.00_p3.ebuild: - Version bump - -*molrep-11.0.00_p2 (02 Jul 2010) - - 02 Jul 2010; Justin Lecher +molrep-11.0.00_p2.ebuild: - Version Bump - -*molrep-11.0.00_p1 (18 Jun 2010) - - 18 Jun 2010; Justin Lecher +molrep-11.0.00_p1.ebuild: - Version Bump - -*molrep-11.0.00-r1 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher -molrep-11.0.00.ebuild, - +molrep-11.0.00-r1.ebuild: - Necessary bump - -*molrep-11.0.00 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher - +files/11.0.00-respect-FLAGS.patch, +molrep-11.0.00.ebuild, - +files/11.0.00-test.patch: - Version Bump, test cases fixed - -*molrep-10.2.38 (12 Mar 2010) - - 12 Mar 2010; Justin Lecher - +molrep-10.2.38.ebuild: - Version Bump - - 15 Feb 2010; Justin Lecher molrep-10.2.35.ebuild, - metadata.xml: - Removed broken test per 305145 - -*molrep-10.2.35 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher - +files/10.2.35-respect-FLAGS.patch, +molrep-10.2.35.ebuild: - molrep splitted from ccp4 - diff --git a/sci-chemistry/molrep/ChangeLog-2015 b/sci-chemistry/molrep/ChangeLog-2015 new file mode 100644 index 00000000..9c82b40a --- /dev/null +++ b/sci-chemistry/molrep/ChangeLog-2015 @@ -0,0 +1,103 @@ +# ChangeLog for sci-chemistry/molrep +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/ChangeLog,v 1.22 2013/02/21 22:00:47 jlec Exp $ + + 21 Feb 2013; Justin Lecher molrep-11.0.02.ebuild, + -molrep-11.0.03.ebuild, molrep-11.0.03-r1.ebuild, metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; + drop old + + 19 Oct 2012; Justin Lecher molrep-11.0.02.ebuild, + molrep-11.0.03.ebuild, molrep-11.0.03-r1.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*molrep-11.0.03-r1 (04 Oct 2011) + + 04 Oct 2011; Justin Lecher +files/11.0.03-EOR.patch, + +molrep-11.0.03-r1.ebuild: + Fix for Molrep: input fixed model mode failure + +*molrep-11.0.03 (07 Sep 2011) + + 07 Sep 2011; Justin Lecher +molrep-11.0.03.ebuild: + Version Bump + + 02 Jul 2011; Justin Lecher molrep-11.0.02.ebuild, + metadata.xml: + Use pkg-config to detect mmdb and lapack libs + + 28 Jun 2011; Brent Baude molrep-11.0.02.ebuild: + Marking molrep-11.0.02 ppc for bug 352065 + + 21 Jun 2011; Justin Lecher molrep-11.0.02.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher molrep-11.0.02.ebuild: + Added fortran-2.eclass support + + 31 Jan 2011; Christian Faulhammer + molrep-11.0.02.ebuild: + stable x86, bug 352065 + + 20 Jan 2011; Markos Chandras molrep-11.0.02.ebuild: + Stable on amd64 wrt bug #352056 + + 18 Jan 2011; Justin Lecher -molrep-10.2.38.ebuild, + -molrep-11.0.00_p3.ebuild: + removed old + + 16 Jan 2011; Kacper Kowalik molrep-11.0.02.ebuild: + marked ~ppc wrt #303931 + +*molrep-11.0.02 (25 Nov 2010) + + 25 Nov 2010; Justin Lecher -molrep-10.2.35.ebuild, + -molrep-11.0.00-r1.ebuild, -molrep-11.0.00_p1.ebuild, + -molrep-11.0.00_p2.ebuild, +molrep-11.0.02.ebuild: + Version Bump and cleaned old + +*molrep-11.0.00_p3 (23 Jul 2010) + + 23 Jul 2010; Justin Lecher +molrep-11.0.00_p3.ebuild: + Version bump + +*molrep-11.0.00_p2 (02 Jul 2010) + + 02 Jul 2010; Justin Lecher +molrep-11.0.00_p2.ebuild: + Version Bump + +*molrep-11.0.00_p1 (18 Jun 2010) + + 18 Jun 2010; Justin Lecher +molrep-11.0.00_p1.ebuild: + Version Bump + +*molrep-11.0.00-r1 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher -molrep-11.0.00.ebuild, + +molrep-11.0.00-r1.ebuild: + Necessary bump + +*molrep-11.0.00 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher + +files/11.0.00-respect-FLAGS.patch, +molrep-11.0.00.ebuild, + +files/11.0.00-test.patch: + Version Bump, test cases fixed + +*molrep-10.2.38 (12 Mar 2010) + + 12 Mar 2010; Justin Lecher + +molrep-10.2.38.ebuild: + Version Bump + + 15 Feb 2010; Justin Lecher molrep-10.2.35.ebuild, + metadata.xml: + Removed broken test per 305145 + +*molrep-10.2.35 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher + +files/10.2.35-respect-FLAGS.patch, +molrep-10.2.35.ebuild: + molrep splitted from ccp4 + diff --git a/sci-chemistry/molscript/ChangeLog b/sci-chemistry/molscript/ChangeLog deleted file mode 100644 index c83296a8..00000000 --- a/sci-chemistry/molscript/ChangeLog +++ /dev/null @@ -1,88 +0,0 @@ -# ChangeLog for sci-chemistry/molscript -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molscript/ChangeLog,v 1.21 2015/05/28 06:15:27 jlec Exp $ - - 28 May 2015; Justin Lecher -molscript-2.1.2-r1.ebuild, - molscript-2.1.2-r2.ebuild: - Drop old - - 27 May 2015; Agostino Sarubbo molscript-2.1.2-r2.ebuild: - Stable for x86, wrt bug #540370 - - 22 May 2015; Agostino Sarubbo molscript-2.1.2-r2.ebuild: - Stable for amd64, wrt bug #540370 - - 13 May 2015; Jack Morgan molscript-2.1.2-r2.ebuild: - ppc stable wrt bug #540370 - - 17 Feb 2015; Justin Lecher molscript-2.1.2-r2.ebuild: - Use subslots for deps - -*molscript-2.1.2-r2 (14 Oct 2014) - - 14 Oct 2014; Justin Lecher +molscript-2.1.2-r2.ebuild, - metadata.xml: - Bump to EAPI=5 - - 09 Aug 2011; Samuli Suominen - +files/2.1.2-libpng15.patch, molscript-2.1.2-r1.ebuild: - Fix building with libpng15 wrt #378175 by Diego Elio Pettenò - - 18 Jul 2011; Kacper Kowalik - molscript-2.1.2-r1.ebuild: - ppc stable wrt #317711 - - 15 Nov 2010; Justin Lecher +files/2.1.2-prll.patch, - molscript-2.1.2-r1.ebuild, files/fix-makefile-shared.patch: - Fix prll compilation - - 08 Nov 2010; Kacper Kowalik - -molscript-2.1.2.ebuild, molscript-2.1.2-r1.ebuild: - media-libs/jpeg -> virtual/jpeg. Drop old. - - 16 Sep 2010; Tomáš Chvátal - molscript-2.1.2.ebuild, molscript-2.1.2-r1.ebuild: - virtual/glut -> media-libs/glut - - 24 Jun 2010; Pacho Ramos molscript-2.1.2-r1.ebuild: - stable amd64, bug 317711 - - 31 May 2010; Pawel Hajdan jr - molscript-2.1.2-r1.ebuild: - x86 stable wrt bug #317711 - -*molscript-2.1.2-r1 (28 Mar 2010) - - 28 Mar 2010; Justin Lecher (jlec) - +files/2.1.2-ldflags.patch, molscript-2.1.2.ebuild, - +molscript-2.1.2-r1.ebuild: - Missing instruction for fetch added, Keyworded for ~*-linux, bumped to - EAPI=3, LDFLAGS are now respected - - 20 Feb 2007; Jeff Gardner molscript-2.1.2.ebuild: - Removing old X dep per Bug 167408. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 02 Sep 2006; Donnie Berkholz ; - molscript-2.1.2.ebuild: - Keyword ~ppc. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; - molscript-2.1.2.ebuild: - x86 stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*molscript-2.1.2 (21 Nov 2005) - - 21 Nov 2005; Donnie Berkholz ; - +files/fix-makefile-shared.patch, +files/glutbitmap.h, +metadata.xml, - +molscript-2.1.2.ebuild: - New molecular graphics package. GLUT license is for files/glutbitmap.h. diff --git a/sci-chemistry/molscript/ChangeLog-2015 b/sci-chemistry/molscript/ChangeLog-2015 new file mode 100644 index 00000000..c83296a8 --- /dev/null +++ b/sci-chemistry/molscript/ChangeLog-2015 @@ -0,0 +1,88 @@ +# ChangeLog for sci-chemistry/molscript +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molscript/ChangeLog,v 1.21 2015/05/28 06:15:27 jlec Exp $ + + 28 May 2015; Justin Lecher -molscript-2.1.2-r1.ebuild, + molscript-2.1.2-r2.ebuild: + Drop old + + 27 May 2015; Agostino Sarubbo molscript-2.1.2-r2.ebuild: + Stable for x86, wrt bug #540370 + + 22 May 2015; Agostino Sarubbo molscript-2.1.2-r2.ebuild: + Stable for amd64, wrt bug #540370 + + 13 May 2015; Jack Morgan molscript-2.1.2-r2.ebuild: + ppc stable wrt bug #540370 + + 17 Feb 2015; Justin Lecher molscript-2.1.2-r2.ebuild: + Use subslots for deps + +*molscript-2.1.2-r2 (14 Oct 2014) + + 14 Oct 2014; Justin Lecher +molscript-2.1.2-r2.ebuild, + metadata.xml: + Bump to EAPI=5 + + 09 Aug 2011; Samuli Suominen + +files/2.1.2-libpng15.patch, molscript-2.1.2-r1.ebuild: + Fix building with libpng15 wrt #378175 by Diego Elio Pettenò + + 18 Jul 2011; Kacper Kowalik + molscript-2.1.2-r1.ebuild: + ppc stable wrt #317711 + + 15 Nov 2010; Justin Lecher +files/2.1.2-prll.patch, + molscript-2.1.2-r1.ebuild, files/fix-makefile-shared.patch: + Fix prll compilation + + 08 Nov 2010; Kacper Kowalik + -molscript-2.1.2.ebuild, molscript-2.1.2-r1.ebuild: + media-libs/jpeg -> virtual/jpeg. Drop old. + + 16 Sep 2010; Tomáš Chvátal + molscript-2.1.2.ebuild, molscript-2.1.2-r1.ebuild: + virtual/glut -> media-libs/glut + + 24 Jun 2010; Pacho Ramos molscript-2.1.2-r1.ebuild: + stable amd64, bug 317711 + + 31 May 2010; Pawel Hajdan jr + molscript-2.1.2-r1.ebuild: + x86 stable wrt bug #317711 + +*molscript-2.1.2-r1 (28 Mar 2010) + + 28 Mar 2010; Justin Lecher (jlec) + +files/2.1.2-ldflags.patch, molscript-2.1.2.ebuild, + +molscript-2.1.2-r1.ebuild: + Missing instruction for fetch added, Keyworded for ~*-linux, bumped to + EAPI=3, LDFLAGS are now respected + + 20 Feb 2007; Jeff Gardner molscript-2.1.2.ebuild: + Removing old X dep per Bug 167408. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 02 Sep 2006; Donnie Berkholz ; + molscript-2.1.2.ebuild: + Keyword ~ppc. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; + molscript-2.1.2.ebuild: + x86 stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*molscript-2.1.2 (21 Nov 2005) + + 21 Nov 2005; Donnie Berkholz ; + +files/fix-makefile-shared.patch, +files/glutbitmap.h, +metadata.xml, + +molscript-2.1.2.ebuild: + New molecular graphics package. GLUT license is for files/glutbitmap.h. diff --git a/sci-chemistry/molsketch/ChangeLog b/sci-chemistry/molsketch/ChangeLog deleted file mode 100644 index f6410648..00000000 --- a/sci-chemistry/molsketch/ChangeLog +++ /dev/null @@ -1,48 +0,0 @@ -# ChangeLog for sci-chemistry/molsketch -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molsketch/ChangeLog,v 1.9 2015/06/29 07:24:58 jlec Exp $ - -*molsketch-0.3.0 (29 Jun 2015) - - 29 Jun 2015; Justin Lecher - +files/molsketch-0.3.0-_DEFAULT_SOURCE.patch, - +files/molsketch-0.3.0-desktop.patch, +files/molsketch-0.3.0-no-quotes.patch, - +molsketch-0.3.0.ebuild, molsketch-0.2.0-r1.ebuild: - Version Bump; fix version of openbabel in deps, bug #553512 - - 17 Sep 2014; Justin Lecher molsketch-0.2.0-r1.ebuild: - Build with -DCMAKE_DISABLE_FIND_PACKAGE_KDE4=ON, #523020 - - 18 Jul 2013; Justin Lecher molsketch-0.2.0-r1.ebuild: - Fix usage of cmake-utils.eclass, #477234 - - 02 Mar 2013; Markos Chandras molsketch-0.2.0-r1.ebuild: - Move Qt dependencies to the new category - - 13 Dec 2012; Justin Lecher molsketch-0.2.0-r1.ebuild, - metadata.xml: - Add quoting for prefix support - - 24 Jun 2012; Justin Lecher molsketch-0.2.0-r1.ebuild, - +files/molsketch-0.2.0-openbabel-231.patch, metadata.xml: - Backport changes in order to fix some unknown build failure, #351232 - - 26 Mar 2011; Justin Lecher molsketch-0.2.0-r1.ebuild: - Restrict openbabel version to 2.2* - -*molsketch-0.2.0-r1 (10 Jan 2011) - - 10 Jan 2011; Kacper Kowalik -molsketch-0.2.0.ebuild, - +molsketch-0.2.0-r1.ebuild: - Correct dependencies, fix library install path wrt #351246, fix doc install - path. Drop old. - - 02 Nov 2010; Justin Lecher +molsketch-0.2.0.ebuild, - +metadata.xml: - Initial import from sci overlay - -*molsketch-0.2.0 (22 Oct 2010) - - 22 Oct 2010; Maximilian Bräutigam (maxb) - initial import of molsketch: - +molsketch-0.2.0.ebuild, +metadata.xml, +ChangeLog, +Manifest diff --git a/sci-chemistry/molsketch/ChangeLog-2015 b/sci-chemistry/molsketch/ChangeLog-2015 new file mode 100644 index 00000000..f6410648 --- /dev/null +++ b/sci-chemistry/molsketch/ChangeLog-2015 @@ -0,0 +1,48 @@ +# ChangeLog for sci-chemistry/molsketch +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molsketch/ChangeLog,v 1.9 2015/06/29 07:24:58 jlec Exp $ + +*molsketch-0.3.0 (29 Jun 2015) + + 29 Jun 2015; Justin Lecher + +files/molsketch-0.3.0-_DEFAULT_SOURCE.patch, + +files/molsketch-0.3.0-desktop.patch, +files/molsketch-0.3.0-no-quotes.patch, + +molsketch-0.3.0.ebuild, molsketch-0.2.0-r1.ebuild: + Version Bump; fix version of openbabel in deps, bug #553512 + + 17 Sep 2014; Justin Lecher molsketch-0.2.0-r1.ebuild: + Build with -DCMAKE_DISABLE_FIND_PACKAGE_KDE4=ON, #523020 + + 18 Jul 2013; Justin Lecher molsketch-0.2.0-r1.ebuild: + Fix usage of cmake-utils.eclass, #477234 + + 02 Mar 2013; Markos Chandras molsketch-0.2.0-r1.ebuild: + Move Qt dependencies to the new category + + 13 Dec 2012; Justin Lecher molsketch-0.2.0-r1.ebuild, + metadata.xml: + Add quoting for prefix support + + 24 Jun 2012; Justin Lecher molsketch-0.2.0-r1.ebuild, + +files/molsketch-0.2.0-openbabel-231.patch, metadata.xml: + Backport changes in order to fix some unknown build failure, #351232 + + 26 Mar 2011; Justin Lecher molsketch-0.2.0-r1.ebuild: + Restrict openbabel version to 2.2* + +*molsketch-0.2.0-r1 (10 Jan 2011) + + 10 Jan 2011; Kacper Kowalik -molsketch-0.2.0.ebuild, + +molsketch-0.2.0-r1.ebuild: + Correct dependencies, fix library install path wrt #351246, fix doc install + path. Drop old. + + 02 Nov 2010; Justin Lecher +molsketch-0.2.0.ebuild, + +metadata.xml: + Initial import from sci overlay + +*molsketch-0.2.0 (22 Oct 2010) + + 22 Oct 2010; Maximilian Bräutigam (maxb) + initial import of molsketch: + +molsketch-0.2.0.ebuild, +metadata.xml, +ChangeLog, +Manifest diff --git a/sci-chemistry/mongochem/ChangeLog b/sci-chemistry/mongochem/ChangeLog deleted file mode 100644 index 9d331696..00000000 --- a/sci-chemistry/mongochem/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-chemistry/mongochem -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mongochem/ChangeLog,v 1.1 2014/02/03 12:14:00 jlec Exp $ - -*mongochem-0.7.0 (03 Feb 2014) - - 03 Feb 2014; Justin Lecher +mongochem-0.7.0.ebuild, - +metadata.xml: - Nre ebuild, written by me - diff --git a/sci-chemistry/mongochem/ChangeLog-2015 b/sci-chemistry/mongochem/ChangeLog-2015 new file mode 100644 index 00000000..9d331696 --- /dev/null +++ b/sci-chemistry/mongochem/ChangeLog-2015 @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/mongochem +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mongochem/ChangeLog,v 1.1 2014/02/03 12:14:00 jlec Exp $ + +*mongochem-0.7.0 (03 Feb 2014) + + 03 Feb 2014; Justin Lecher +mongochem-0.7.0.ebuild, + +metadata.xml: + Nre ebuild, written by me + diff --git a/sci-chemistry/mopac7/ChangeLog b/sci-chemistry/mopac7/ChangeLog deleted file mode 100644 index d43b80a9..00000000 --- a/sci-chemistry/mopac7/ChangeLog +++ /dev/null @@ -1,146 +0,0 @@ -# ChangeLog for sci-chemistry/mopac7 -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mopac7/ChangeLog,v 1.32 2015/03/05 11:44:08 jlec Exp $ - -*mopac7-1.15-r1 (05 Mar 2015) - - 05 Mar 2015; Justin Lecher +mopac7-1.15-r1.ebuild, - -mopac7-1.10-r1.ebuild, metadata.xml: - Drop old; EAPI bump - - 03 Jan 2014; Ulrich Müller mopac7-1.10-r1.ebuild, - mopac7-1.15.ebuild: - Fix LICENSE, bug 496688. - - 19 Oct 2012; Justin Lecher mopac7-1.10-r1.ebuild, - mopac7-1.15.ebuild, metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 02 Aug 2011; Alexey Shvetsov mopac7-1.15.ebuild: - Add ~amd64-linux keyword - - 21 Jun 2011; Justin Lecher mopac7-1.10-r1.ebuild, - mopac7-1.15.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher mopac7-1.10-r1.ebuild, - mopac7-1.15.ebuild: - Added fortran-2.eclass support - - 28 May 2011; Brent Baude mopac7-1.15.ebuild: - Marking mopac7-1.15 ppc for bug 331175 - - 16 Dec 2010; Justin Lecher mopac7-1.15.ebuild: - Removal of fortran.eclass, #348851 - - 02 Dec 2010; Justin Lecher -mopac7-1.13.ebuild, - -mopac7-1.13-r1.ebuild, -mopac7-1.14-r1.ebuild: - Removed versions not working with automake 1.6 - - 10 Oct 2010; Markos Chandras mopac7-1.15.ebuild: - Stable on amd64 wrt bug #331175 - - 06 Sep 2010; Christian Faulhammer mopac7-1.15.ebuild: - stable x86, bug 331175 - -*mopac7-1.15 (17 Jun 2010) - - 17 Jun 2010; Justin Lecher +mopac7-1.15.ebuild, - +files/Makefile, metadata.xml: - Version Bump, included optional build of libgmxmopac7 - -*mopac7-1.14-r2 (16 Jun 2010) - - 16 Jun 2010; Justin Lecher mopac7-1.14-r1.ebuild, - +mopac7-1.14-r2.ebuild: - gmxmopac7 support, Importing from sci overlay - - 15 Jun 2010; Justin Lecher mopac7-1.10-r1.ebuild, - mopac7-1.13.ebuild, mopac7-1.13-r1.ebuild: - QA, removed WANT_AUTO*=latest - - 18 Jan 2009; Jeff Gardner ChangeLog: - Fix for bug #254491. Big Thanks to Permjacov E. A. and Rene Meier. Also - removing mopac7-1.14.ebuild because of repoman warning: Upstream parallel - compilation bug (ebuild calls emake -j1 on line: 55) - - 28 Nov 2008; Patrick Lauer mopac7-1.14.ebuild: - Adding econf call so it can actually work. No idea how this got through, - sorry. - -*mopac7-1.14 (27 Nov 2008) - - 27 Nov 2008; Patrick Lauer +mopac7-1.14.ebuild: - Bump to 1.14 with ok from dberkholz - -*mopac7-1.13-r1 (13 Jul 2008) - - 13 Jul 2008; Jeff Gardner +mopac7-1.13-r1.ebuild: - Fix to use gfortran - -*mopac7-1.13 (08 Jul 2008) - - 08 Jul 2008; Donnie Berkholz ; +mopac7-1.13.ebuild: - Bump. Pull in newer libf2c so configure doesn't fail. - - 07 Jan 2007; Danny van Dyk -mopac7-1.00-r1.ebuild, - -mopac7-1.10.ebuild: - QA: Removed unused versions. - - 14 Dec 2006; Jeff Gardner ChangeLog: - Fix for autotools wrt bug 152425 - - 24 Nov 2006; Steve Dibb mopac7-1.00-r1.ebuild, - mopac7-1.10.ebuild, mopac7-1.10-r1.ebuild: - Add ~amd64, bug 133268 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; - mopac7-1.10-r1.ebuild: - x86/ppc stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*mopac7-1.10-r1 (13 May 2006) - - 13 May 2006; Donnie Berkholz ; - +mopac7-1.10-r1.ebuild: - Fix parallel build. Remove the really ugly LDFLAGS hack, it's no longer - needed. Cleaner installation of executable and wrapper. - -*mopac7-1.10 (06 Dec 2005) - - 06 Dec 2005; Donnie Berkholz ; -mopac7-1.00.ebuild, - +mopac7-1.10.ebuild: - New version. GCC-4 and 64-bit fixes, as well as new libmopac7.h - - 06 Aug 2005; David Holm mopac7-1.00-r1.ebuild: - Added to ~ppc. - -*mopac7-1.00-r1 (05 Aug 2005) - - 05 Aug 2005; Donnie Berkholz ; - +mopac7-1.00-r1.ebuild: - (#101288) Fix run_mopac7 shell script, courtesy of Mathias Weigt - . - - 10 Jul 2005; Donnie Berkholz ; mopac7-1.00.ebuild: - (#98457) Parallel build broken. - - 10 Jul 2005; Donnie Berkholz ; mopac7-1.00.ebuild: - Fix f2c dep to libf2c. - -*mopac7-1.00 (08 Jul 2005) - - 08 Jul 2005; Donnie Berkholz ; +metadata.xml, - +mopac7-1.00.ebuild: - Initial commit, ebuild by me. This will be useful for the new ghemical. It's - a quite solid semi-empirical package. diff --git a/sci-chemistry/mopac7/ChangeLog-2015 b/sci-chemistry/mopac7/ChangeLog-2015 new file mode 100644 index 00000000..d43b80a9 --- /dev/null +++ b/sci-chemistry/mopac7/ChangeLog-2015 @@ -0,0 +1,146 @@ +# ChangeLog for sci-chemistry/mopac7 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mopac7/ChangeLog,v 1.32 2015/03/05 11:44:08 jlec Exp $ + +*mopac7-1.15-r1 (05 Mar 2015) + + 05 Mar 2015; Justin Lecher +mopac7-1.15-r1.ebuild, + -mopac7-1.10-r1.ebuild, metadata.xml: + Drop old; EAPI bump + + 03 Jan 2014; Ulrich Müller mopac7-1.10-r1.ebuild, + mopac7-1.15.ebuild: + Fix LICENSE, bug 496688. + + 19 Oct 2012; Justin Lecher mopac7-1.10-r1.ebuild, + mopac7-1.15.ebuild, metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 02 Aug 2011; Alexey Shvetsov mopac7-1.15.ebuild: + Add ~amd64-linux keyword + + 21 Jun 2011; Justin Lecher mopac7-1.10-r1.ebuild, + mopac7-1.15.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher mopac7-1.10-r1.ebuild, + mopac7-1.15.ebuild: + Added fortran-2.eclass support + + 28 May 2011; Brent Baude mopac7-1.15.ebuild: + Marking mopac7-1.15 ppc for bug 331175 + + 16 Dec 2010; Justin Lecher mopac7-1.15.ebuild: + Removal of fortran.eclass, #348851 + + 02 Dec 2010; Justin Lecher -mopac7-1.13.ebuild, + -mopac7-1.13-r1.ebuild, -mopac7-1.14-r1.ebuild: + Removed versions not working with automake 1.6 + + 10 Oct 2010; Markos Chandras mopac7-1.15.ebuild: + Stable on amd64 wrt bug #331175 + + 06 Sep 2010; Christian Faulhammer mopac7-1.15.ebuild: + stable x86, bug 331175 + +*mopac7-1.15 (17 Jun 2010) + + 17 Jun 2010; Justin Lecher +mopac7-1.15.ebuild, + +files/Makefile, metadata.xml: + Version Bump, included optional build of libgmxmopac7 + +*mopac7-1.14-r2 (16 Jun 2010) + + 16 Jun 2010; Justin Lecher mopac7-1.14-r1.ebuild, + +mopac7-1.14-r2.ebuild: + gmxmopac7 support, Importing from sci overlay + + 15 Jun 2010; Justin Lecher mopac7-1.10-r1.ebuild, + mopac7-1.13.ebuild, mopac7-1.13-r1.ebuild: + QA, removed WANT_AUTO*=latest + + 18 Jan 2009; Jeff Gardner ChangeLog: + Fix for bug #254491. Big Thanks to Permjacov E. A. and Rene Meier. Also + removing mopac7-1.14.ebuild because of repoman warning: Upstream parallel + compilation bug (ebuild calls emake -j1 on line: 55) + + 28 Nov 2008; Patrick Lauer mopac7-1.14.ebuild: + Adding econf call so it can actually work. No idea how this got through, + sorry. + +*mopac7-1.14 (27 Nov 2008) + + 27 Nov 2008; Patrick Lauer +mopac7-1.14.ebuild: + Bump to 1.14 with ok from dberkholz + +*mopac7-1.13-r1 (13 Jul 2008) + + 13 Jul 2008; Jeff Gardner +mopac7-1.13-r1.ebuild: + Fix to use gfortran + +*mopac7-1.13 (08 Jul 2008) + + 08 Jul 2008; Donnie Berkholz ; +mopac7-1.13.ebuild: + Bump. Pull in newer libf2c so configure doesn't fail. + + 07 Jan 2007; Danny van Dyk -mopac7-1.00-r1.ebuild, + -mopac7-1.10.ebuild: + QA: Removed unused versions. + + 14 Dec 2006; Jeff Gardner ChangeLog: + Fix for autotools wrt bug 152425 + + 24 Nov 2006; Steve Dibb mopac7-1.00-r1.ebuild, + mopac7-1.10.ebuild, mopac7-1.10-r1.ebuild: + Add ~amd64, bug 133268 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; + mopac7-1.10-r1.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*mopac7-1.10-r1 (13 May 2006) + + 13 May 2006; Donnie Berkholz ; + +mopac7-1.10-r1.ebuild: + Fix parallel build. Remove the really ugly LDFLAGS hack, it's no longer + needed. Cleaner installation of executable and wrapper. + +*mopac7-1.10 (06 Dec 2005) + + 06 Dec 2005; Donnie Berkholz ; -mopac7-1.00.ebuild, + +mopac7-1.10.ebuild: + New version. GCC-4 and 64-bit fixes, as well as new libmopac7.h + + 06 Aug 2005; David Holm mopac7-1.00-r1.ebuild: + Added to ~ppc. + +*mopac7-1.00-r1 (05 Aug 2005) + + 05 Aug 2005; Donnie Berkholz ; + +mopac7-1.00-r1.ebuild: + (#101288) Fix run_mopac7 shell script, courtesy of Mathias Weigt + . + + 10 Jul 2005; Donnie Berkholz ; mopac7-1.00.ebuild: + (#98457) Parallel build broken. + + 10 Jul 2005; Donnie Berkholz ; mopac7-1.00.ebuild: + Fix f2c dep to libf2c. + +*mopac7-1.00 (08 Jul 2005) + + 08 Jul 2005; Donnie Berkholz ; +metadata.xml, + +mopac7-1.00.ebuild: + Initial commit, ebuild by me. This will be useful for the new ghemical. It's + a quite solid semi-empirical package. diff --git a/sci-chemistry/mosflm/ChangeLog b/sci-chemistry/mosflm/ChangeLog deleted file mode 100644 index 3b0ed69e..00000000 --- a/sci-chemistry/mosflm/ChangeLog +++ /dev/null @@ -1,116 +0,0 @@ -# ChangeLog for sci-chemistry/mosflm -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mosflm/ChangeLog,v 1.27 2015/05/15 11:32:10 jlec Exp $ - - 15 May 2015; Justin Lecher -mosflm-7.0.6-r2.ebuild, - -mosflm-7.0.7-r2.ebuild: - Drop old - - 15 May 2015; Pacho Ramos mosflm-7.0.9.ebuild: - ppc stable wrt bug #548692 - - 13 May 2015; Agostino Sarubbo mosflm-7.0.9.ebuild: - Stable for x86, wrt bug #548692 - - 08 May 2015; Agostino Sarubbo mosflm-7.0.9.ebuild: - Stable for amd64, wrt bug #548692 - - 05 May 2015; Justin Lecher mosflm-7.0.9.ebuild: - Fix slotting of jpeg - - 05 May 2015; Justin Lecher mosflm-7.0.9.ebuild: - Bump to EAPI=5 - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 05 May 2013; Justin Lecher mosflm-7.0.6-r2.ebuild, - mosflm-7.0.7-r2.ebuild, mosflm-7.0.9.ebuild, metadata.xml: - Fix for ncurses[tinfo] - - 19 Oct 2012; Justin Lecher mosflm-7.0.6-r2.ebuild, - mosflm-7.0.7-r2.ebuild, mosflm-7.0.9.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*mosflm-7.0.9 (06 Jul 2012) - - 06 Jul 2012; Justin Lecher -files/7.0.8-parallel.patch, - -mosflm-7.0.8.ebuild, +mosflm-7.0.9.ebuild, - +files/mosflm-7.0.9-buffer-overflow.patch, +files/7.0.9-parallel.patch: - Version Bump - -*mosflm-7.0.8 (05 Jul 2012) - - 05 Jul 2012; Justin Lecher +files/7.0.8-parallel.patch, - -mosflm-7.0.7.ebuild, -mosflm-7.0.7-r1.ebuild, +mosflm-7.0.8.ebuild: - Version Bump, drop old - -*mosflm-7.0.7-r2 (19 Jun 2012) - - 19 Jun 2012; Justin Lecher +mosflm-7.0.7-r2.ebuild, - +files/mosflm-7.0.7-buffer-overflow.patch, - +files/mosflm-7.0.7-impl-dec.patch: - Fix Buffer overflow, #421843 - -*mosflm-7.0.7-r1 (28 Apr 2012) - - 28 Apr 2012; Justin Lecher +files/7.0.7-parallel.patch, - mosflm-7.0.6-r2.ebuild, +mosflm-7.0.7-r1.ebuild: - Unbundle licbf and libjpeg, fix parallel build, Drop stable ppc keyword due - to broken deps - -*mosflm-7.0.7 (07 Sep 2011) - - 07 Sep 2011; Justin Lecher +mosflm-7.0.7.ebuild, - metadata.xml: - Version Bump, #349409 - - 19 Jul 2011; Markus Meier mosflm-7.0.6-r2.ebuild: - x86 stable, bug #352112 - - 28 Jun 2011; Brent Baude mosflm-7.0.6-r2.ebuild: - Marking mosflm-7.0.6-r2 ppc for bug 352112 - - 21 Jun 2011; Justin Lecher mosflm-7.0.6-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher mosflm-7.0.6-r2.ebuild: - Added fortran-2.eclass support - - 21 Jan 2011; Markos Chandras mosflm-7.0.6-r2.ebuild: - Stable on amd64 wrt bug #352112 - - 19 Jan 2011; Justin Lecher +files/7.0.6-impl-dec.patch, - mosflm-7.0.6-r2.ebuild: - Fix for implicit declarations - - 16 Jan 2011; Kacper Kowalik - mosflm-7.0.6-r2.ebuild: - marked ~ppc wrt #303931 - - 16 Dec 2010; Justin Lecher mosflm-7.0.6-r2.ebuild: - Removal of fortran.eclass, #348851 - - 08 Nov 2010; Kacper Kowalik - mosflm-7.0.6-r2.ebuild: - media-libs/jpeg -> virtual/jpeg - -*mosflm-7.0.6-r2 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher -mosflm-7.0.6-r1.ebuild, - +mosflm-7.0.6-r2.ebuild: - Necessary bump - - 15 Jun 2010; Justin Lecher mosflm-7.0.6-r1.ebuild: - keyworded for linux prefix - - 13 Feb 2010; Justin Lecher (jlec) +mosflm-7.0.6.ebuild: - fix for test and don't statically link against jpeg - -*mosflm-7.0.6 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/7.0.6-Makefile.patch, +files/7.0.6-parallel.patch, - +mosflm-7.0.6.ebuild, +metadata.xml: - Splitted mosflm from ccp4 diff --git a/sci-chemistry/mosflm/ChangeLog-2015 b/sci-chemistry/mosflm/ChangeLog-2015 new file mode 100644 index 00000000..3b0ed69e --- /dev/null +++ b/sci-chemistry/mosflm/ChangeLog-2015 @@ -0,0 +1,116 @@ +# ChangeLog for sci-chemistry/mosflm +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mosflm/ChangeLog,v 1.27 2015/05/15 11:32:10 jlec Exp $ + + 15 May 2015; Justin Lecher -mosflm-7.0.6-r2.ebuild, + -mosflm-7.0.7-r2.ebuild: + Drop old + + 15 May 2015; Pacho Ramos mosflm-7.0.9.ebuild: + ppc stable wrt bug #548692 + + 13 May 2015; Agostino Sarubbo mosflm-7.0.9.ebuild: + Stable for x86, wrt bug #548692 + + 08 May 2015; Agostino Sarubbo mosflm-7.0.9.ebuild: + Stable for amd64, wrt bug #548692 + + 05 May 2015; Justin Lecher mosflm-7.0.9.ebuild: + Fix slotting of jpeg + + 05 May 2015; Justin Lecher mosflm-7.0.9.ebuild: + Bump to EAPI=5 + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 05 May 2013; Justin Lecher mosflm-7.0.6-r2.ebuild, + mosflm-7.0.7-r2.ebuild, mosflm-7.0.9.ebuild, metadata.xml: + Fix for ncurses[tinfo] + + 19 Oct 2012; Justin Lecher mosflm-7.0.6-r2.ebuild, + mosflm-7.0.7-r2.ebuild, mosflm-7.0.9.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*mosflm-7.0.9 (06 Jul 2012) + + 06 Jul 2012; Justin Lecher -files/7.0.8-parallel.patch, + -mosflm-7.0.8.ebuild, +mosflm-7.0.9.ebuild, + +files/mosflm-7.0.9-buffer-overflow.patch, +files/7.0.9-parallel.patch: + Version Bump + +*mosflm-7.0.8 (05 Jul 2012) + + 05 Jul 2012; Justin Lecher +files/7.0.8-parallel.patch, + -mosflm-7.0.7.ebuild, -mosflm-7.0.7-r1.ebuild, +mosflm-7.0.8.ebuild: + Version Bump, drop old + +*mosflm-7.0.7-r2 (19 Jun 2012) + + 19 Jun 2012; Justin Lecher +mosflm-7.0.7-r2.ebuild, + +files/mosflm-7.0.7-buffer-overflow.patch, + +files/mosflm-7.0.7-impl-dec.patch: + Fix Buffer overflow, #421843 + +*mosflm-7.0.7-r1 (28 Apr 2012) + + 28 Apr 2012; Justin Lecher +files/7.0.7-parallel.patch, + mosflm-7.0.6-r2.ebuild, +mosflm-7.0.7-r1.ebuild: + Unbundle licbf and libjpeg, fix parallel build, Drop stable ppc keyword due + to broken deps + +*mosflm-7.0.7 (07 Sep 2011) + + 07 Sep 2011; Justin Lecher +mosflm-7.0.7.ebuild, + metadata.xml: + Version Bump, #349409 + + 19 Jul 2011; Markus Meier mosflm-7.0.6-r2.ebuild: + x86 stable, bug #352112 + + 28 Jun 2011; Brent Baude mosflm-7.0.6-r2.ebuild: + Marking mosflm-7.0.6-r2 ppc for bug 352112 + + 21 Jun 2011; Justin Lecher mosflm-7.0.6-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher mosflm-7.0.6-r2.ebuild: + Added fortran-2.eclass support + + 21 Jan 2011; Markos Chandras mosflm-7.0.6-r2.ebuild: + Stable on amd64 wrt bug #352112 + + 19 Jan 2011; Justin Lecher +files/7.0.6-impl-dec.patch, + mosflm-7.0.6-r2.ebuild: + Fix for implicit declarations + + 16 Jan 2011; Kacper Kowalik + mosflm-7.0.6-r2.ebuild: + marked ~ppc wrt #303931 + + 16 Dec 2010; Justin Lecher mosflm-7.0.6-r2.ebuild: + Removal of fortran.eclass, #348851 + + 08 Nov 2010; Kacper Kowalik + mosflm-7.0.6-r2.ebuild: + media-libs/jpeg -> virtual/jpeg + +*mosflm-7.0.6-r2 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher -mosflm-7.0.6-r1.ebuild, + +mosflm-7.0.6-r2.ebuild: + Necessary bump + + 15 Jun 2010; Justin Lecher mosflm-7.0.6-r1.ebuild: + keyworded for linux prefix + + 13 Feb 2010; Justin Lecher (jlec) +mosflm-7.0.6.ebuild: + fix for test and don't statically link against jpeg + +*mosflm-7.0.6 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/7.0.6-Makefile.patch, +files/7.0.6-parallel.patch, + +mosflm-7.0.6.ebuild, +metadata.xml: + Splitted mosflm from ccp4 diff --git a/sci-chemistry/mpqc/ChangeLog b/sci-chemistry/mpqc/ChangeLog deleted file mode 100644 index f4fc2f1e..00000000 --- a/sci-chemistry/mpqc/ChangeLog +++ /dev/null @@ -1,177 +0,0 @@ -# ChangeLog for sci-chemistry/mpqc -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mpqc/ChangeLog,v 1.31 2013/02/27 14:38:40 jlec Exp $ - - 27 Feb 2013; Justin Lecher mpqc-2.3.1-r1.ebuild, - mpqc-2.3.1-r2.ebuild, mpqc-2.3.1-r3.ebuild: - Add missing dep on virtual/pkgconfig - - 13 Dec 2012; Justin Lecher mpqc-2.3.1-r3.ebuild, - metadata.xml: - Run the intermediate testsuite - - 21 Nov 2012; Agostino Sarubbo mpqc-2.3.1-r3.ebuild: - Stable for x86, wrt bug #436886 - - 12 Oct 2012; Anthony G. Basile mpqc-2.3.1-r3.ebuild: - stable ppc64, bug #436886 - - 10 Oct 2012; Agostino Sarubbo mpqc-2.3.1-r3.ebuild: - Stable for amd64, wrt bug #436886 - - 10 Oct 2012; Justin Lecher mpqc-2.3.1-r3.ebuild: - Handle static-libs - - 10 Oct 2012; Brent Baude mpqc-2.3.1-r3.ebuild: - Marking mpqc-2.3.1-r3 ppc for bug 436886 - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #105599 - -*mpqc-2.3.1-r3 (17 Jul 2011) - - 17 Jul 2011; Justin Lecher mpqc-2.3.1-r1.ebuild, - mpqc-2.3.1-r2.ebuild, +mpqc-2.3.1-r3.ebuild, +files/mpqc-2.3.1-blas.patch, - metadata.xml: - Use pkg-config for blas/lapack detection, #262143 - - 16 Dec 2010; Justin Lecher mpqc-2.3.1-r1.ebuild, - mpqc-2.3.1-r2.ebuild: - Removal of fortran.eclass, #348851 - - 06 Sep 2010; Christian Faulhammer mpqc-2.3.1-r2.ebuild: - stable x86, bug 325561 - - 21 Jun 2010; Justin Lecher mpqc-2.3.1-r2.ebuild: - Respect CXX/CC in all cases - - 18 Jun 2010; Kacper Kowalik - files/mpqc-2.3.1-as-needed.patch: - More as-needed fixes (bug 324301). Thanks Jeremy Murphy - for reporting - -*mpqc-2.3.1-r2 (23 May 2010) - - 23 May 2010; Justin Lecher mpqc-2.3.1-r1.ebuild, - +mpqc-2.3.1-r2.ebuild, +files/mpqc-2.3.1-as-needed.patch, - +files/mpqc-2.3.1-respect-ldflags.patch, - +files/mpqc-2.3.1-test-failure-hack.patch: - Fix for bug 248345, as-needed related, thanks Kacper Kowalik (Xarthisius) - for preparing the patches - - 05 Oct 2006; Donnie Berkholz ; -mpqc-2.2.2.ebuild, - -mpqc-2.2.3.ebuild, -mpqc-2.3.0.ebuild, -mpqc-2.3.1.ebuild: - Clean up. - - 05 Oct 2006; Simon Stelling mpqc-2.3.1-r1.ebuild: - stable on amd64 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 19 Sep 2006; Markus Dittrich mpqc-2.3.1.ebuild, - mpqc-2.3.1-r1.ebuild: - Replaced tcltk with tk useflag. Thanks to je_fro - for his patch. This fixes bug #148213. - - 17 Aug 2006; Markus Rothe mpqc-2.3.1-r1.ebuild: - Stable on ppc64 - - 09 Jul 2006; Donnie Berkholz ; mpqc-2.3.1-r1.ebuild: - x86/ppc stable. - -*mpqc-2.3.1-r1 (13 May 2006) - - 13 May 2006; Donnie Berkholz ; - +mpqc-2.3.1-r1.ebuild: - Always build shared libraries, so other programs can link against them - without mixing PIC and non-PIC code. That breaks architectures including - ppc, ppc64, amd64. Do some general ebuild cleanup, and add an RDEPEND so not - all the build-time tools are required at runtime. - -*mpqc-2.3.1 (11 Apr 2006) - - 11 Apr 2006; Markus Dittrich +mpqc-2.3.1.ebuild: - Version bump. Thanks much to mll for - his ebuild. This fixes bug #129535. - - 15 Mar 2006; Donnie Berkholz ; mpqc-2.2.2.ebuild, - mpqc-2.2.3.ebuild: - Remove USE=X, it screws up modular X and doesn't do anything at all. - - 20 Nov 2005; Markus Dittrich mpqc-2.3.0.ebuild: - Reworked install process to avoid sandbox violations. This fixes bug #113056. - -*mpqc-2.3.0 (20 Nov 2005) - - 20 Nov 2005; Markus Dittrich metadata.xml, - +mpqc-2.3.0.ebuild: - New version - - 11 Jun 2005; Markus Rothe mpqc-2.2.3.ebuild: - Added ~ppc64 and solved bug #62124: ppc64 needs --enable-shared - - 24 May 2005; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild, - mpqc-2.2.3.ebuild: - (#54595) Inherit fortran eclass so we require a fortran compiler. - -*mpqc-2.2.3 (24 May 2005) - - 24 May 2005; Donnie Berkholz ; +mpqc-2.2.3.ebuild: - (#92179) Bump. Fix up indentation, use '-i' with sed instead of moving files - around, change .gz to .bz2 for distfiles. Add threads USE flag. - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +mpqc-2.2.2-r1.ebuild, +mpqc-2.2.2.ebuild: - Moved from app-sci/mpqc to sci-chemistry/mpqc. - - 02 Oct 2004; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild, - mpqc-2.2.2.ebuild: - Add some die()'s (#54595). - - 23 Sep 2004; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild: - Add previous KEYWORDS as ~arch. - -*mpqc-2.2.2-r1 (23 Sep 2004) - - 23 Sep 2004; Donnie Berkholz ; +mpqc-2.2.2-r1.ebuild: - Update blas and lapack dependencies to the virtuals. This requires a revision - bump to fix some issues (#54596, #64200). - - 23 Sep 2004; Donnie Berkholz ; -mpqc-2.1.2.ebuild, - -mpqc-2.2.0.ebuild: - Pull old versions. - - 21 Sep 2004; Danny van Dyk mpqc-2.2.2.ebuild: - Marked stable on amd64. - - 27 Jul 2004; Donnie Berkholz ; mpqc-2.2.2.ebuild: - x86. - - 05 Jun 2004; David Holm mpqc-2.2.2.ebuild: - Added to ~ppc. - -*mpqc-2.2.2 (03 Jun 2004) - - 03 Jun 2004; Donnie Berkholz ; +mpqc-2.2.2.ebuild: - Version bump (#52646). Should now work on ppc. - - 30 Mar 2004; Donnie Berkholz ; mpqc-2.1.2.ebuild, - mpqc-2.2.0.ebuild: - Change x11-base/xfree dependency to virtual/x11. - - 24 Dec 2003; Donnie Berkholz ; : - Bad digest. Closing bug #36425. - -*mpqc-2.2.0 (14 Dec 2003) - - 14 Dec 2003; Donnie Berkholz ; mpqc-2.2.0.ebuild: - Version bump. - - 02 Nov 2002; Hannes Mehnert mpqc-2.1.2.ebuild: - marked stable for x86 - -*mpqc-2.1.2 (31 Oct 2002) - - 31 Oct 2002; Hannes Mehnert mpqc-2.1.2.ebuild, - ChangeLog: Initial ebuild. diff --git a/sci-chemistry/mpqc/ChangeLog-2015 b/sci-chemistry/mpqc/ChangeLog-2015 new file mode 100644 index 00000000..f4fc2f1e --- /dev/null +++ b/sci-chemistry/mpqc/ChangeLog-2015 @@ -0,0 +1,177 @@ +# ChangeLog for sci-chemistry/mpqc +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mpqc/ChangeLog,v 1.31 2013/02/27 14:38:40 jlec Exp $ + + 27 Feb 2013; Justin Lecher mpqc-2.3.1-r1.ebuild, + mpqc-2.3.1-r2.ebuild, mpqc-2.3.1-r3.ebuild: + Add missing dep on virtual/pkgconfig + + 13 Dec 2012; Justin Lecher mpqc-2.3.1-r3.ebuild, + metadata.xml: + Run the intermediate testsuite + + 21 Nov 2012; Agostino Sarubbo mpqc-2.3.1-r3.ebuild: + Stable for x86, wrt bug #436886 + + 12 Oct 2012; Anthony G. Basile mpqc-2.3.1-r3.ebuild: + stable ppc64, bug #436886 + + 10 Oct 2012; Agostino Sarubbo mpqc-2.3.1-r3.ebuild: + Stable for amd64, wrt bug #436886 + + 10 Oct 2012; Justin Lecher mpqc-2.3.1-r3.ebuild: + Handle static-libs + + 10 Oct 2012; Brent Baude mpqc-2.3.1-r3.ebuild: + Marking mpqc-2.3.1-r3 ppc for bug 436886 + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #105599 + +*mpqc-2.3.1-r3 (17 Jul 2011) + + 17 Jul 2011; Justin Lecher mpqc-2.3.1-r1.ebuild, + mpqc-2.3.1-r2.ebuild, +mpqc-2.3.1-r3.ebuild, +files/mpqc-2.3.1-blas.patch, + metadata.xml: + Use pkg-config for blas/lapack detection, #262143 + + 16 Dec 2010; Justin Lecher mpqc-2.3.1-r1.ebuild, + mpqc-2.3.1-r2.ebuild: + Removal of fortran.eclass, #348851 + + 06 Sep 2010; Christian Faulhammer mpqc-2.3.1-r2.ebuild: + stable x86, bug 325561 + + 21 Jun 2010; Justin Lecher mpqc-2.3.1-r2.ebuild: + Respect CXX/CC in all cases + + 18 Jun 2010; Kacper Kowalik + files/mpqc-2.3.1-as-needed.patch: + More as-needed fixes (bug 324301). Thanks Jeremy Murphy + for reporting + +*mpqc-2.3.1-r2 (23 May 2010) + + 23 May 2010; Justin Lecher mpqc-2.3.1-r1.ebuild, + +mpqc-2.3.1-r2.ebuild, +files/mpqc-2.3.1-as-needed.patch, + +files/mpqc-2.3.1-respect-ldflags.patch, + +files/mpqc-2.3.1-test-failure-hack.patch: + Fix for bug 248345, as-needed related, thanks Kacper Kowalik (Xarthisius) + for preparing the patches + + 05 Oct 2006; Donnie Berkholz ; -mpqc-2.2.2.ebuild, + -mpqc-2.2.3.ebuild, -mpqc-2.3.0.ebuild, -mpqc-2.3.1.ebuild: + Clean up. + + 05 Oct 2006; Simon Stelling mpqc-2.3.1-r1.ebuild: + stable on amd64 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 19 Sep 2006; Markus Dittrich mpqc-2.3.1.ebuild, + mpqc-2.3.1-r1.ebuild: + Replaced tcltk with tk useflag. Thanks to je_fro + for his patch. This fixes bug #148213. + + 17 Aug 2006; Markus Rothe mpqc-2.3.1-r1.ebuild: + Stable on ppc64 + + 09 Jul 2006; Donnie Berkholz ; mpqc-2.3.1-r1.ebuild: + x86/ppc stable. + +*mpqc-2.3.1-r1 (13 May 2006) + + 13 May 2006; Donnie Berkholz ; + +mpqc-2.3.1-r1.ebuild: + Always build shared libraries, so other programs can link against them + without mixing PIC and non-PIC code. That breaks architectures including + ppc, ppc64, amd64. Do some general ebuild cleanup, and add an RDEPEND so not + all the build-time tools are required at runtime. + +*mpqc-2.3.1 (11 Apr 2006) + + 11 Apr 2006; Markus Dittrich +mpqc-2.3.1.ebuild: + Version bump. Thanks much to mll for + his ebuild. This fixes bug #129535. + + 15 Mar 2006; Donnie Berkholz ; mpqc-2.2.2.ebuild, + mpqc-2.2.3.ebuild: + Remove USE=X, it screws up modular X and doesn't do anything at all. + + 20 Nov 2005; Markus Dittrich mpqc-2.3.0.ebuild: + Reworked install process to avoid sandbox violations. This fixes bug #113056. + +*mpqc-2.3.0 (20 Nov 2005) + + 20 Nov 2005; Markus Dittrich metadata.xml, + +mpqc-2.3.0.ebuild: + New version + + 11 Jun 2005; Markus Rothe mpqc-2.2.3.ebuild: + Added ~ppc64 and solved bug #62124: ppc64 needs --enable-shared + + 24 May 2005; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild, + mpqc-2.2.3.ebuild: + (#54595) Inherit fortran eclass so we require a fortran compiler. + +*mpqc-2.2.3 (24 May 2005) + + 24 May 2005; Donnie Berkholz ; +mpqc-2.2.3.ebuild: + (#92179) Bump. Fix up indentation, use '-i' with sed instead of moving files + around, change .gz to .bz2 for distfiles. Add threads USE flag. + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +mpqc-2.2.2-r1.ebuild, +mpqc-2.2.2.ebuild: + Moved from app-sci/mpqc to sci-chemistry/mpqc. + + 02 Oct 2004; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild, + mpqc-2.2.2.ebuild: + Add some die()'s (#54595). + + 23 Sep 2004; Donnie Berkholz ; mpqc-2.2.2-r1.ebuild: + Add previous KEYWORDS as ~arch. + +*mpqc-2.2.2-r1 (23 Sep 2004) + + 23 Sep 2004; Donnie Berkholz ; +mpqc-2.2.2-r1.ebuild: + Update blas and lapack dependencies to the virtuals. This requires a revision + bump to fix some issues (#54596, #64200). + + 23 Sep 2004; Donnie Berkholz ; -mpqc-2.1.2.ebuild, + -mpqc-2.2.0.ebuild: + Pull old versions. + + 21 Sep 2004; Danny van Dyk mpqc-2.2.2.ebuild: + Marked stable on amd64. + + 27 Jul 2004; Donnie Berkholz ; mpqc-2.2.2.ebuild: + x86. + + 05 Jun 2004; David Holm mpqc-2.2.2.ebuild: + Added to ~ppc. + +*mpqc-2.2.2 (03 Jun 2004) + + 03 Jun 2004; Donnie Berkholz ; +mpqc-2.2.2.ebuild: + Version bump (#52646). Should now work on ppc. + + 30 Mar 2004; Donnie Berkholz ; mpqc-2.1.2.ebuild, + mpqc-2.2.0.ebuild: + Change x11-base/xfree dependency to virtual/x11. + + 24 Dec 2003; Donnie Berkholz ; : + Bad digest. Closing bug #36425. + +*mpqc-2.2.0 (14 Dec 2003) + + 14 Dec 2003; Donnie Berkholz ; mpqc-2.2.0.ebuild: + Version bump. + + 02 Nov 2002; Hannes Mehnert mpqc-2.1.2.ebuild: + marked stable for x86 + +*mpqc-2.1.2 (31 Oct 2002) + + 31 Oct 2002; Hannes Mehnert mpqc-2.1.2.ebuild, + ChangeLog: Initial ebuild. diff --git a/sci-chemistry/mrbump/ChangeLog b/sci-chemistry/mrbump/ChangeLog deleted file mode 100644 index 84b32c52..00000000 --- a/sci-chemistry/mrbump/ChangeLog +++ /dev/null @@ -1,35 +0,0 @@ -# ChangeLog for sci-chemistry/mrbump -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mrbump/ChangeLog,v 1.9 2012/04/14 09:52:34 nativemad Exp $ - - 14 Apr 2012; Andreas Schuerch mrbump-0.4.4.ebuild: - x86 stable, see bug 375917, thanks all. - - 16 Oct 2011; Samuli Suominen mrbump-0.4.4.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen mrbump-0.4.4.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon mrbump-0.4.4.ebuild: - Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug - #351753. - - 18 Jan 2011; Justin Lecher mrbump-0.4.4.ebuild: - Rearranged build layout - - 16 Jan 2011; Kacper Kowalik mrbump-0.4.4.ebuild: - marked ~ppc wrt #303931 - - 22 Apr 2010; Justin Lecher mrbump-0.4.4.ebuild: - Keyworded for ~*-linux - - 22 Apr 2010; Justin Lecher mrbump-0.4.4.ebuild: - Support for Python ABIs, #316175 - -*mrbump-0.4.4 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/0.4.4-superpose.patch, +mrbump-0.4.4.ebuild, +metadata.xml: - Splitted mrbump from ccp4 - diff --git a/sci-chemistry/mrbump/ChangeLog-2015 b/sci-chemistry/mrbump/ChangeLog-2015 new file mode 100644 index 00000000..84b32c52 --- /dev/null +++ b/sci-chemistry/mrbump/ChangeLog-2015 @@ -0,0 +1,35 @@ +# ChangeLog for sci-chemistry/mrbump +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mrbump/ChangeLog,v 1.9 2012/04/14 09:52:34 nativemad Exp $ + + 14 Apr 2012; Andreas Schuerch mrbump-0.4.4.ebuild: + x86 stable, see bug 375917, thanks all. + + 16 Oct 2011; Samuli Suominen mrbump-0.4.4.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen mrbump-0.4.4.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon mrbump-0.4.4.ebuild: + Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug + #351753. + + 18 Jan 2011; Justin Lecher mrbump-0.4.4.ebuild: + Rearranged build layout + + 16 Jan 2011; Kacper Kowalik mrbump-0.4.4.ebuild: + marked ~ppc wrt #303931 + + 22 Apr 2010; Justin Lecher mrbump-0.4.4.ebuild: + Keyworded for ~*-linux + + 22 Apr 2010; Justin Lecher mrbump-0.4.4.ebuild: + Support for Python ABIs, #316175 + +*mrbump-0.4.4 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/0.4.4-superpose.patch, +mrbump-0.4.4.ebuild, +metadata.xml: + Splitted mrbump from ccp4 + diff --git a/sci-chemistry/msms-bin/ChangeLog b/sci-chemistry/msms-bin/ChangeLog deleted file mode 100644 index b96b597d..00000000 --- a/sci-chemistry/msms-bin/ChangeLog +++ /dev/null @@ -1,39 +0,0 @@ -# ChangeLog for sci-chemistry/msms-bin -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/msms-bin/ChangeLog,v 1.7 2012/05/23 07:56:19 jlec Exp $ - - 23 May 2012; Justin Lecher msms-bin-2.6.1-r1.ebuild: - Move to EAPI=4, use QA_PREBUILT instead of QA_DT_HASH - - 03 Feb 2012; Justin Lecher msms-bin-2.6.1-r1.ebuild, - metadata.xml: - Fix the QA_DT_HASH definition - - 22 Mar 2011; Justin Lecher msms-bin-2.6.1-r1.ebuild: - Corrected Download page - - 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: - Keyworded for ~-linux prefix - - 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: - Correct location of atmtypenumber file - - 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: - Use awk instead of nawk - -*msms-bin-2.6.1-r1 (30 Oct 2010) - - 30 Oct 2010; Justin Lecher +msms-bin-2.6.1-r1.ebuild, - +metadata.xml: - Moved package from sci-chemistry/msms to sci-chemistry/msms-bin, fixed - installation destination, install missing scripts - - 23 Aug 2010; Diego E. Pettenò msms-2.6.1.ebuild: - Fix nofetch message. REMOVE QA-BREAKING binchecks RESTRICTION. - -*msms-2.6.1 (21 Aug 2010) - - 21 Aug 2010; Alexey Shvetsov +msms-2.6.1.ebuild, - +metadata.xml: - Initial import per bug #209161 - diff --git a/sci-chemistry/msms-bin/ChangeLog-2015 b/sci-chemistry/msms-bin/ChangeLog-2015 new file mode 100644 index 00000000..b96b597d --- /dev/null +++ b/sci-chemistry/msms-bin/ChangeLog-2015 @@ -0,0 +1,39 @@ +# ChangeLog for sci-chemistry/msms-bin +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/msms-bin/ChangeLog,v 1.7 2012/05/23 07:56:19 jlec Exp $ + + 23 May 2012; Justin Lecher msms-bin-2.6.1-r1.ebuild: + Move to EAPI=4, use QA_PREBUILT instead of QA_DT_HASH + + 03 Feb 2012; Justin Lecher msms-bin-2.6.1-r1.ebuild, + metadata.xml: + Fix the QA_DT_HASH definition + + 22 Mar 2011; Justin Lecher msms-bin-2.6.1-r1.ebuild: + Corrected Download page + + 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: + Keyworded for ~-linux prefix + + 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: + Correct location of atmtypenumber file + + 30 Oct 2010; Justin Lecher msms-bin-2.6.1-r1.ebuild: + Use awk instead of nawk + +*msms-bin-2.6.1-r1 (30 Oct 2010) + + 30 Oct 2010; Justin Lecher +msms-bin-2.6.1-r1.ebuild, + +metadata.xml: + Moved package from sci-chemistry/msms to sci-chemistry/msms-bin, fixed + installation destination, install missing scripts + + 23 Aug 2010; Diego E. Pettenò msms-2.6.1.ebuild: + Fix nofetch message. REMOVE QA-BREAKING binchecks RESTRICTION. + +*msms-2.6.1 (21 Aug 2010) + + 21 Aug 2010; Alexey Shvetsov +msms-2.6.1.ebuild, + +metadata.xml: + Initial import per bug #209161 + diff --git a/sci-chemistry/mustang/ChangeLog b/sci-chemistry/mustang/ChangeLog deleted file mode 100644 index 9de17907..00000000 --- a/sci-chemistry/mustang/ChangeLog +++ /dev/null @@ -1,50 +0,0 @@ -# ChangeLog for sci-chemistry/mustang -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/ChangeLog,v 1.13 2012/04/29 10:36:13 jlec Exp $ - - 29 Apr 2012; Justin Lecher mustang-3.2.1.ebuild, - +files/mustang-3.2.1-gcc-4.7.patch: - Fix for gcc-4.7, #413945 - - 21 Jan 2012; Pawel Hajdan jr mustang-3.2.1.ebuild: - x86 stable wrt bug #398541 - - 11 Jan 2012; Agostino Sarubbo mustang-3.2.1.ebuild: - Stable for AMD64, wrt bug #398541 - - 11 Jan 2012; Justin Lecher -mustang-3.ebuild, - mustang-3.2.1.ebuild, metadata.xml: - Bumped to EAPI=4, dropped old - - 07 Jul 2010; Justin Lecher mustang-3.2.1.ebuild: - Fixing SRC_URI, #327251 - - 06 Jul 2010; Justin Lecher mustang-3.2.1.ebuild: - Keyworded for *-linux prefix - -*mustang-3.2.1 (06 Jul 2010) - - 06 Jul 2010; Justin Lecher +mustang-3.2.1.ebuild: - Version Bump - - 19 Dec 2008; Peter Alfredsen - +files/mustang-3-gcc43.patch, mustang-3.ebuild: - Fix bug 250420 thanks to Joel - - 29 Apr 2008; Markus Dittrich ChangeLog: - Redigested ebuild to fix broken Manifest (bug #219429). - - 11 Dec 2006; Donnie Berkholz ; mustang-3.ebuild: - Stable on x86. - - 11 Dec 2006; Donnie Berkholz ; mustang-3.ebuild: - License is more accurately the generic BSD than the specific Intel (although - perhaps that shouldn't even exist); also add reference for citation (Arun S. - Konagurthu). - -*mustang-3 (21 Oct 2006) - - 21 Oct 2006; Donnie Berkholz ; +metadata.xml, - +mustang-3.ebuild: - New package: MUltiple STructural AligNment AlGorithm. - diff --git a/sci-chemistry/mustang/ChangeLog-2015 b/sci-chemistry/mustang/ChangeLog-2015 new file mode 100644 index 00000000..9de17907 --- /dev/null +++ b/sci-chemistry/mustang/ChangeLog-2015 @@ -0,0 +1,50 @@ +# ChangeLog for sci-chemistry/mustang +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/ChangeLog,v 1.13 2012/04/29 10:36:13 jlec Exp $ + + 29 Apr 2012; Justin Lecher mustang-3.2.1.ebuild, + +files/mustang-3.2.1-gcc-4.7.patch: + Fix for gcc-4.7, #413945 + + 21 Jan 2012; Pawel Hajdan jr mustang-3.2.1.ebuild: + x86 stable wrt bug #398541 + + 11 Jan 2012; Agostino Sarubbo mustang-3.2.1.ebuild: + Stable for AMD64, wrt bug #398541 + + 11 Jan 2012; Justin Lecher -mustang-3.ebuild, + mustang-3.2.1.ebuild, metadata.xml: + Bumped to EAPI=4, dropped old + + 07 Jul 2010; Justin Lecher mustang-3.2.1.ebuild: + Fixing SRC_URI, #327251 + + 06 Jul 2010; Justin Lecher mustang-3.2.1.ebuild: + Keyworded for *-linux prefix + +*mustang-3.2.1 (06 Jul 2010) + + 06 Jul 2010; Justin Lecher +mustang-3.2.1.ebuild: + Version Bump + + 19 Dec 2008; Peter Alfredsen + +files/mustang-3-gcc43.patch, mustang-3.ebuild: + Fix bug 250420 thanks to Joel + + 29 Apr 2008; Markus Dittrich ChangeLog: + Redigested ebuild to fix broken Manifest (bug #219429). + + 11 Dec 2006; Donnie Berkholz ; mustang-3.ebuild: + Stable on x86. + + 11 Dec 2006; Donnie Berkholz ; mustang-3.ebuild: + License is more accurately the generic BSD than the specific Intel (although + perhaps that shouldn't even exist); also add reference for citation (Arun S. + Konagurthu). + +*mustang-3 (21 Oct 2006) + + 21 Oct 2006; Donnie Berkholz ; +metadata.xml, + +mustang-3.ebuild: + New package: MUltiple STructural AligNment AlGorithm. + diff --git a/sci-chemistry/namd/ChangeLog b/sci-chemistry/namd/ChangeLog deleted file mode 100644 index 7cd7794e..00000000 --- a/sci-chemistry/namd/ChangeLog +++ /dev/null @@ -1,112 +0,0 @@ -# ChangeLog for sci-chemistry/namd -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.23 2015/06/26 12:03:44 nicolasbock Exp $ - - 26 Jun 2015; Nicolas Bock metadata.xml: - Updated metadata.xml - - 20 Mar 2015; Justin Lecher -namd-2.7_beta2-r1.ebuild, - -namd-2.9.ebuild, metadata.xml, namd-2.10.ebuild, namd-2.9-r1.ebuild: - Fix tcl/tk slotting;drop old - -*namd-2.10 (07 Mar 2015) - - 07 Mar 2015; Christoph Junghans - +files/namd-2.10-gentoo.patch, +namd-2.10.ebuild: - version bump - - 13 Dec 2013; Nicolas Bock metadata.xml: - sci-chemistry/namd: Updated maintainer email to gentoo.org - - 30 Nov 2013; Christoph Junghans namd-2.9-r1.ebuild: - fixed deps - -*namd-2.9-r1 (30 Nov 2013) - - 30 Nov 2013; Christoph Junghans +namd-2.9-r1.ebuild: - clean up (fftw3, ldflags, no tcsh) - -*namd-2.9 (18 Oct 2013) - - 18 Oct 2013; Christoph Junghans - +files/namd-2.9-gentoo.patch, +namd-2.9.ebuild, metadata.xml: - version bump - - 11 Jan 2013; Justin Lecher files/namd-2.7-gentoo.patch, - metadata.xml: - Link against versionless tcl/tk libs - - 29 Nov 2012; Justin Lecher -namd-2.6.ebuild, - -namd-2.7_beta2.ebuild, namd-2.7_beta2-r1.ebuild: - Drop old - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #105599 - -*namd-2.7_beta2-r1 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher namd-2.7_beta2.ebuild, - +namd-2.7_beta2-r1.ebuild, +files/namd-2.7-iml-dec.patch, - +files/namd-2.7-ldflags.patch: - respect LDFLAGS and declarations - - 24 Jun 2010; Justin Lecher -namd-2.7_beta1.ebuild: - Removed unneeded - -*namd-2.7_beta2 (24 Apr 2010) -*namd-2.7_beta1 (24 Apr 2010) - - 24 Apr 2010; Donnie Berkholz ; - +namd-2.7_beta1.ebuild, +namd-2.7_beta2.ebuild, -namd-2.7.ebuild, - +files/namd-2.7_beta2-gentoo.patch: - Bump to 2.7_beta2. The previous 2.7 ebuild was actually 2.7 beta 1 but was - not named as such, so rename it to allow people to upgrade to beta 2. - - 23 Apr 2010; Donnie Berkholz ; namd-2.7.ebuild: - All tc-get* sed replacements must happen before C*FLAGS-related ones, - otherwise we can replace things like -frecord-gcc-switches with - -frecord-x86_64-pc-linux-gnu-gcc-switches. - - 23 Sep 2009; Patrick Lauer namd-2.6.ebuild, - namd-2.7.ebuild: - Remove virtual/libc - -*namd-2.7 (08 Jun 2009) - - 08 Jun 2009; Jeff Gardner namd-2.6.ebuild, - +namd-2.7.ebuild, +files/namd-2.7-gentoo.patch: - Latest version for testing. If anyone wants to modify and test on x86 - please feel free :) - - 03 Jun 2008; Michael Sterrett namd-2.6.ebuild: - remove reference to app-shells/csh which has been removed - - 07 Jan 2007; Danny van Dyk -namd-2.6_beta1.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*namd-2.6 (19 Sep 2006) - - 19 Sep 2006; Markus Dittrich - +files/namd-2.6-gentoo.patch, +namd-2.6.ebuild: - Version bump. This fixes bug #148146. - - 22 Dec 2005; Markus Dittrich namd-2.6_beta1.ebuild: - removed from package.mask and marked ~x86. Added app-shells/tcsh as - alternative to app-shells/csh in DEPEND. - - 10 Nov 2005; Markus Dittrich metadata.xml, - namd-2.6_beta1.ebuild: - Changed charm dependency to sys-cluster/charm since charm - has moved from sci-libs/charm to sys-cluster/charm - -*namd-2.6_beta1 (05 Oct 2005) - - 05 Oct 2005; Olivier Fisette - +files/namd-barrier-fix-gentoo.patch, +files/namd-fftw-lib-gentoo.patch, - +files/namd-makefile-gentoo.patch, +files/namd-tcl-lib-gentoo.patch, - +metadata.xml, +namd-2.6_beta1.ebuild: - Initial import. Ebuild contributed by Markus Dittrich - (bug #108033). diff --git a/sci-chemistry/namd/ChangeLog-2015 b/sci-chemistry/namd/ChangeLog-2015 new file mode 100644 index 00000000..7cd7794e --- /dev/null +++ b/sci-chemistry/namd/ChangeLog-2015 @@ -0,0 +1,112 @@ +# ChangeLog for sci-chemistry/namd +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/namd/ChangeLog,v 1.23 2015/06/26 12:03:44 nicolasbock Exp $ + + 26 Jun 2015; Nicolas Bock metadata.xml: + Updated metadata.xml + + 20 Mar 2015; Justin Lecher -namd-2.7_beta2-r1.ebuild, + -namd-2.9.ebuild, metadata.xml, namd-2.10.ebuild, namd-2.9-r1.ebuild: + Fix tcl/tk slotting;drop old + +*namd-2.10 (07 Mar 2015) + + 07 Mar 2015; Christoph Junghans + +files/namd-2.10-gentoo.patch, +namd-2.10.ebuild: + version bump + + 13 Dec 2013; Nicolas Bock metadata.xml: + sci-chemistry/namd: Updated maintainer email to gentoo.org + + 30 Nov 2013; Christoph Junghans namd-2.9-r1.ebuild: + fixed deps + +*namd-2.9-r1 (30 Nov 2013) + + 30 Nov 2013; Christoph Junghans +namd-2.9-r1.ebuild: + clean up (fftw3, ldflags, no tcsh) + +*namd-2.9 (18 Oct 2013) + + 18 Oct 2013; Christoph Junghans + +files/namd-2.9-gentoo.patch, +namd-2.9.ebuild, metadata.xml: + version bump + + 11 Jan 2013; Justin Lecher files/namd-2.7-gentoo.patch, + metadata.xml: + Link against versionless tcl/tk libs + + 29 Nov 2012; Justin Lecher -namd-2.6.ebuild, + -namd-2.7_beta2.ebuild, namd-2.7_beta2-r1.ebuild: + Drop old + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #105599 + +*namd-2.7_beta2-r1 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher namd-2.7_beta2.ebuild, + +namd-2.7_beta2-r1.ebuild, +files/namd-2.7-iml-dec.patch, + +files/namd-2.7-ldflags.patch: + respect LDFLAGS and declarations + + 24 Jun 2010; Justin Lecher -namd-2.7_beta1.ebuild: + Removed unneeded + +*namd-2.7_beta2 (24 Apr 2010) +*namd-2.7_beta1 (24 Apr 2010) + + 24 Apr 2010; Donnie Berkholz ; + +namd-2.7_beta1.ebuild, +namd-2.7_beta2.ebuild, -namd-2.7.ebuild, + +files/namd-2.7_beta2-gentoo.patch: + Bump to 2.7_beta2. The previous 2.7 ebuild was actually 2.7 beta 1 but was + not named as such, so rename it to allow people to upgrade to beta 2. + + 23 Apr 2010; Donnie Berkholz ; namd-2.7.ebuild: + All tc-get* sed replacements must happen before C*FLAGS-related ones, + otherwise we can replace things like -frecord-gcc-switches with + -frecord-x86_64-pc-linux-gnu-gcc-switches. + + 23 Sep 2009; Patrick Lauer namd-2.6.ebuild, + namd-2.7.ebuild: + Remove virtual/libc + +*namd-2.7 (08 Jun 2009) + + 08 Jun 2009; Jeff Gardner namd-2.6.ebuild, + +namd-2.7.ebuild, +files/namd-2.7-gentoo.patch: + Latest version for testing. If anyone wants to modify and test on x86 + please feel free :) + + 03 Jun 2008; Michael Sterrett namd-2.6.ebuild: + remove reference to app-shells/csh which has been removed + + 07 Jan 2007; Danny van Dyk -namd-2.6_beta1.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*namd-2.6 (19 Sep 2006) + + 19 Sep 2006; Markus Dittrich + +files/namd-2.6-gentoo.patch, +namd-2.6.ebuild: + Version bump. This fixes bug #148146. + + 22 Dec 2005; Markus Dittrich namd-2.6_beta1.ebuild: + removed from package.mask and marked ~x86. Added app-shells/tcsh as + alternative to app-shells/csh in DEPEND. + + 10 Nov 2005; Markus Dittrich metadata.xml, + namd-2.6_beta1.ebuild: + Changed charm dependency to sys-cluster/charm since charm + has moved from sci-libs/charm to sys-cluster/charm + +*namd-2.6_beta1 (05 Oct 2005) + + 05 Oct 2005; Olivier Fisette + +files/namd-barrier-fix-gentoo.patch, +files/namd-fftw-lib-gentoo.patch, + +files/namd-makefile-gentoo.patch, +files/namd-tcl-lib-gentoo.patch, + +metadata.xml, +namd-2.6_beta1.ebuild: + Initial import. Ebuild contributed by Markus Dittrich + (bug #108033). diff --git a/sci-chemistry/nmrglue/ChangeLog b/sci-chemistry/nmrglue/ChangeLog deleted file mode 100644 index ec1161cd..00000000 --- a/sci-chemistry/nmrglue/ChangeLog +++ /dev/null @@ -1,21 +0,0 @@ -# ChangeLog for sci-chemistry/nmrglue -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrglue/ChangeLog,v 1.3 2015/03/04 08:17:14 jlec Exp $ - -*nmrglue-0.5-r1 (04 Mar 2015) - - 04 Mar 2015; Justin Lecher +files/nmrglue-0.5-nohyper.patch, - +nmrglue-0.5-r1.ebuild, -nmrglue-0.5.ebuild: - Backport fix for agilent data conversion - -*nmrglue-0.5 (20 Feb 2015) - - 20 Feb 2015; Justin Lecher +nmrglue-0.5.ebuild, - nmrglue-0.4.ebuild: - Version Bump; add tests - -*nmrglue-0.4 (04 Apr 2013) - - 04 Apr 2013; Justin Lecher +nmrglue-0.4.ebuild, - +metadata.xml: - New addition diff --git a/sci-chemistry/nmrglue/ChangeLog-2015 b/sci-chemistry/nmrglue/ChangeLog-2015 new file mode 100644 index 00000000..ec1161cd --- /dev/null +++ b/sci-chemistry/nmrglue/ChangeLog-2015 @@ -0,0 +1,21 @@ +# ChangeLog for sci-chemistry/nmrglue +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrglue/ChangeLog,v 1.3 2015/03/04 08:17:14 jlec Exp $ + +*nmrglue-0.5-r1 (04 Mar 2015) + + 04 Mar 2015; Justin Lecher +files/nmrglue-0.5-nohyper.patch, + +nmrglue-0.5-r1.ebuild, -nmrglue-0.5.ebuild: + Backport fix for agilent data conversion + +*nmrglue-0.5 (20 Feb 2015) + + 20 Feb 2015; Justin Lecher +nmrglue-0.5.ebuild, + nmrglue-0.4.ebuild: + Version Bump; add tests + +*nmrglue-0.4 (04 Apr 2013) + + 04 Apr 2013; Justin Lecher +nmrglue-0.4.ebuild, + +metadata.xml: + New addition diff --git a/sci-chemistry/numbat/ChangeLog b/sci-chemistry/numbat/ChangeLog deleted file mode 100644 index 18f0a042..00000000 --- a/sci-chemistry/numbat/ChangeLog +++ /dev/null @@ -1,22 +0,0 @@ -# ChangeLog for sci-chemistry/numbat -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/numbat/ChangeLog,v 1.4 2013/05/22 14:40:28 jlec Exp $ - -*numbat-0.999-r1 (22 May 2013) - - 22 May 2013; Justin Lecher -numbat-0.999.ebuild, - +numbat-0.999-r1.ebuild, +files/numbat-0.999-gnuplot.patch: - Add fix for gnuplot - - 21 May 2013; Justin Lecher Manifest: - Fix Manifest - - 21 May 2013; Justin Lecher numbat-0.999.ebuild: - Drop fetch restriction - -*numbat-0.999 (21 May 2013) - - 21 May 2013; Justin Lecher +numbat-0.999.ebuild, - +metadata.xml: - New addition - diff --git a/sci-chemistry/numbat/ChangeLog-2015 b/sci-chemistry/numbat/ChangeLog-2015 new file mode 100644 index 00000000..18f0a042 --- /dev/null +++ b/sci-chemistry/numbat/ChangeLog-2015 @@ -0,0 +1,22 @@ +# ChangeLog for sci-chemistry/numbat +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/numbat/ChangeLog,v 1.4 2013/05/22 14:40:28 jlec Exp $ + +*numbat-0.999-r1 (22 May 2013) + + 22 May 2013; Justin Lecher -numbat-0.999.ebuild, + +numbat-0.999-r1.ebuild, +files/numbat-0.999-gnuplot.patch: + Add fix for gnuplot + + 21 May 2013; Justin Lecher Manifest: + Fix Manifest + + 21 May 2013; Justin Lecher numbat-0.999.ebuild: + Drop fetch restriction + +*numbat-0.999 (21 May 2013) + + 21 May 2013; Justin Lecher +numbat-0.999.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/oasis/ChangeLog b/sci-chemistry/oasis/ChangeLog deleted file mode 100644 index e4d581c3..00000000 --- a/sci-chemistry/oasis/ChangeLog +++ /dev/null @@ -1,96 +0,0 @@ -# ChangeLog for sci-chemistry/oasis -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/oasis/ChangeLog,v 1.26 2015/03/09 13:33:02 jlec Exp $ - - 09 Mar 2015; Justin Lecher -oasis-4.0-r2.ebuild, - oasis-4.0-r3.ebuild: - Drop old - - 24 Dec 2013; Agostino Sarubbo oasis-4.0-r3.ebuild: - Stable for x86, wrt bug #485944 - - 28 Sep 2013; Justin Lecher oasis-4.0-r3.ebuild: - Drop unnessecary die - - 27 Sep 2013; Chema Alonso oasis-4.0-r3.ebuild: - Stable for amd64 wrt bug #485944 - - 25 Sep 2013; Justin Lecher oasis-4.0-r3.ebuild, - metadata.xml: - Bump EAPI - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - sci-chemistry only - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 19 Oct 2012; Justin Lecher oasis-4.0-r2.ebuild, - oasis-4.0-r3.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*oasis-4.0-r3 (06 Oct 2012) - - 06 Oct 2012; Justin Lecher oasis-4.0-r2.ebuild, - +oasis-4.0-r3.ebuild: - Resolve clash with dev-ml/oasis, #436800 - - 14 Apr 2012; Andreas Schuerch oasis-4.0-r2.ebuild: - x86 stable, see bug 375917, thanks all. - - 16 Oct 2011; Samuli Suominen oasis-4.0-r2.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen oasis-4.0-r2.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon oasis-4.0-r2.ebuild: - Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug - #351753. - - 21 Jul 2011; Justin Lecher oasis-4.0-r2.ebuild, - metadata.xml: - Some cleanup - - 21 Jun 2011; Justin Lecher oasis-4.0-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher oasis-4.0-r2.ebuild: - Added fortran-2.eclass support - - 16 Jan 2011; Kacper Kowalik oasis-4.0-r2.ebuild: - marked ~ppc wrt #303931 - - 16 Dec 2010; Justin Lecher oasis-4.0-r2.ebuild: - Removal of fortran.eclass, #348851 - - 06 Jul 2010; Justin Lecher oasis-4.0-r2.ebuild: - Fix installation problems - -*oasis-4.0-r2 (06 Jul 2010) - - 06 Jul 2010; Justin Lecher -oasis-4.0.ebuild, - -oasis-4.0-r1.ebuild, +oasis-4.0-r2.ebuild: - Use FFLAGS instead of CFLAGS for compilation, Xarthisius on irc - - 15 Jun 2010; Justin Lecher oasis-4.0-r1.ebuild: - Installing html at correct place - -*oasis-4.0-r1 (22 May 2010) - - 22 May 2010; Justin Lecher +oasis-4.0-r1.ebuild: - Fixes for bug 314053 - - 05 Apr 2010; Justin Lecher oasis-4.0.ebuild: - Keyworded for ~x86-linux ~amd64-linux, tested by me - - 24 Feb 2010; Justin Lecher oasis-4.0.ebuild: - fperms -> chmod to use bash globs, fixes 306061 - removed circular dependencies - -*oasis-4.0 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher - +files/4.0-makefile.patch, +oasis-4.0.ebuild, +metadata.xml: - updated version for oasis from ccp4 diff --git a/sci-chemistry/oasis/ChangeLog-2015 b/sci-chemistry/oasis/ChangeLog-2015 new file mode 100644 index 00000000..e4d581c3 --- /dev/null +++ b/sci-chemistry/oasis/ChangeLog-2015 @@ -0,0 +1,96 @@ +# ChangeLog for sci-chemistry/oasis +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/oasis/ChangeLog,v 1.26 2015/03/09 13:33:02 jlec Exp $ + + 09 Mar 2015; Justin Lecher -oasis-4.0-r2.ebuild, + oasis-4.0-r3.ebuild: + Drop old + + 24 Dec 2013; Agostino Sarubbo oasis-4.0-r3.ebuild: + Stable for x86, wrt bug #485944 + + 28 Sep 2013; Justin Lecher oasis-4.0-r3.ebuild: + Drop unnessecary die + + 27 Sep 2013; Chema Alonso oasis-4.0-r3.ebuild: + Stable for amd64 wrt bug #485944 + + 25 Sep 2013; Justin Lecher oasis-4.0-r3.ebuild, + metadata.xml: + Bump EAPI + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + sci-chemistry only + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 19 Oct 2012; Justin Lecher oasis-4.0-r2.ebuild, + oasis-4.0-r3.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*oasis-4.0-r3 (06 Oct 2012) + + 06 Oct 2012; Justin Lecher oasis-4.0-r2.ebuild, + +oasis-4.0-r3.ebuild: + Resolve clash with dev-ml/oasis, #436800 + + 14 Apr 2012; Andreas Schuerch oasis-4.0-r2.ebuild: + x86 stable, see bug 375917, thanks all. + + 16 Oct 2011; Samuli Suominen oasis-4.0-r2.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen oasis-4.0-r2.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon oasis-4.0-r2.ebuild: + Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug + #351753. + + 21 Jul 2011; Justin Lecher oasis-4.0-r2.ebuild, + metadata.xml: + Some cleanup + + 21 Jun 2011; Justin Lecher oasis-4.0-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher oasis-4.0-r2.ebuild: + Added fortran-2.eclass support + + 16 Jan 2011; Kacper Kowalik oasis-4.0-r2.ebuild: + marked ~ppc wrt #303931 + + 16 Dec 2010; Justin Lecher oasis-4.0-r2.ebuild: + Removal of fortran.eclass, #348851 + + 06 Jul 2010; Justin Lecher oasis-4.0-r2.ebuild: + Fix installation problems + +*oasis-4.0-r2 (06 Jul 2010) + + 06 Jul 2010; Justin Lecher -oasis-4.0.ebuild, + -oasis-4.0-r1.ebuild, +oasis-4.0-r2.ebuild: + Use FFLAGS instead of CFLAGS for compilation, Xarthisius on irc + + 15 Jun 2010; Justin Lecher oasis-4.0-r1.ebuild: + Installing html at correct place + +*oasis-4.0-r1 (22 May 2010) + + 22 May 2010; Justin Lecher +oasis-4.0-r1.ebuild: + Fixes for bug 314053 + + 05 Apr 2010; Justin Lecher oasis-4.0.ebuild: + Keyworded for ~x86-linux ~amd64-linux, tested by me + + 24 Feb 2010; Justin Lecher oasis-4.0.ebuild: + fperms -> chmod to use bash globs, fixes 306061 + removed circular dependencies + +*oasis-4.0 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher + +files/4.0-makefile.patch, +oasis-4.0.ebuild, +metadata.xml: + updated version for oasis from ccp4 diff --git a/sci-chemistry/openbabel-perl/ChangeLog b/sci-chemistry/openbabel-perl/ChangeLog deleted file mode 100644 index 78f14d2d..00000000 --- a/sci-chemistry/openbabel-perl/ChangeLog +++ /dev/null @@ -1,64 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel-perl -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/ChangeLog,v 1.15 2015/06/28 11:20:25 zlogene Exp $ - - 28 Jun 2015; Mikle Kolyada openbabel-perl-2.3.2.ebuild: - x86 stable wrt bug #534620 - - 02 Mar 2015; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: - Stable for ppc, wrt bug #534620 - - 31 Jan 2015; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: - Stable for amd64, wrt bug #534620 - - 25 Oct 2014; Andreas K. Huettel - -openbabel-perl-2.3.1.ebuild, openbabel-perl-2.3.2.ebuild: - Cleanup due to old EAPI; add slot operator on Perl dependency - - 15 Jul 2014; Mikle Kolyada -openbabel-perl-2.3.0.ebuild: - Cleanup due to old EAPI - - 20 Feb 2013; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: - Add ~arm, wrt bug #455960 - - 08 Feb 2013; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: - Add ~ppc, wrt bug #455960 - - 24 Jan 2013; Justin Lecher metadata.xml: - Correct copy-paste error moticed by rei4dan - - 24 Jan 2013; Justin Lecher openbabel-perl-2.3.2.ebuild, - metadata.xml: - Fix double prefix - -*openbabel-perl-2.3.2 (06 Dec 2012) - - 06 Dec 2012; Justin Lecher +openbabel-perl-2.3.2.ebuild, - +files/openbabel-perl-2.3.2-bindings_only.patch, - +files/openbabel-perl-2.3.2-trunk_cmake.patch: - Version Bump prepared by Reinis Danne, #439434 - -*openbabel-perl-2.3.1 (04 Mar 2012) - - 04 Mar 2012; Justin Lecher +openbabel-perl-2.3.1.ebuild, - +files/openbabel-perl-2.3.1-makefile.patch, metadata.xml: - Import Version Bump from sci overlay prepared by Reinis Danne - - 09 May 2011; Justin Lecher - files/openbabel-perl-2.3.0-makefile.patch: - Prevent double prefix - - 29 Mar 2011; Justin Lecher openbabel-perl-2.3.0.ebuild: - Depend on >=swig-2 - - 28 Mar 2011; Justin Lecher openbabel-perl-2.3.0.ebuild, - +files/openbabel-perl-2.3.0-swig.patch: - Sane check for swig version, - https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= - 428740 - -*openbabel-perl-2.3.0 (26 Mar 2011) - - 26 Mar 2011; Justin Lecher +openbabel-perl-2.3.0.ebuild, - +files/openbabel-perl-2.3.0-makefile.patch, +metadata.xml: - Perl Bindings for openbabel, writing by rei4dan, #212212 diff --git a/sci-chemistry/openbabel-perl/ChangeLog-2015 b/sci-chemistry/openbabel-perl/ChangeLog-2015 new file mode 100644 index 00000000..78f14d2d --- /dev/null +++ b/sci-chemistry/openbabel-perl/ChangeLog-2015 @@ -0,0 +1,64 @@ +# ChangeLog for sci-chemistry/openbabel-perl +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-perl/ChangeLog,v 1.15 2015/06/28 11:20:25 zlogene Exp $ + + 28 Jun 2015; Mikle Kolyada openbabel-perl-2.3.2.ebuild: + x86 stable wrt bug #534620 + + 02 Mar 2015; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: + Stable for ppc, wrt bug #534620 + + 31 Jan 2015; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: + Stable for amd64, wrt bug #534620 + + 25 Oct 2014; Andreas K. Huettel + -openbabel-perl-2.3.1.ebuild, openbabel-perl-2.3.2.ebuild: + Cleanup due to old EAPI; add slot operator on Perl dependency + + 15 Jul 2014; Mikle Kolyada -openbabel-perl-2.3.0.ebuild: + Cleanup due to old EAPI + + 20 Feb 2013; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: + Add ~arm, wrt bug #455960 + + 08 Feb 2013; Agostino Sarubbo openbabel-perl-2.3.2.ebuild: + Add ~ppc, wrt bug #455960 + + 24 Jan 2013; Justin Lecher metadata.xml: + Correct copy-paste error moticed by rei4dan + + 24 Jan 2013; Justin Lecher openbabel-perl-2.3.2.ebuild, + metadata.xml: + Fix double prefix + +*openbabel-perl-2.3.2 (06 Dec 2012) + + 06 Dec 2012; Justin Lecher +openbabel-perl-2.3.2.ebuild, + +files/openbabel-perl-2.3.2-bindings_only.patch, + +files/openbabel-perl-2.3.2-trunk_cmake.patch: + Version Bump prepared by Reinis Danne, #439434 + +*openbabel-perl-2.3.1 (04 Mar 2012) + + 04 Mar 2012; Justin Lecher +openbabel-perl-2.3.1.ebuild, + +files/openbabel-perl-2.3.1-makefile.patch, metadata.xml: + Import Version Bump from sci overlay prepared by Reinis Danne + + 09 May 2011; Justin Lecher + files/openbabel-perl-2.3.0-makefile.patch: + Prevent double prefix + + 29 Mar 2011; Justin Lecher openbabel-perl-2.3.0.ebuild: + Depend on >=swig-2 + + 28 Mar 2011; Justin Lecher openbabel-perl-2.3.0.ebuild, + +files/openbabel-perl-2.3.0-swig.patch: + Sane check for swig version, + https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= + 428740 + +*openbabel-perl-2.3.0 (26 Mar 2011) + + 26 Mar 2011; Justin Lecher +openbabel-perl-2.3.0.ebuild, + +files/openbabel-perl-2.3.0-makefile.patch, +metadata.xml: + Perl Bindings for openbabel, writing by rei4dan, #212212 diff --git a/sci-chemistry/openbabel-python/ChangeLog b/sci-chemistry/openbabel-python/ChangeLog deleted file mode 100644 index 834f9bb3..00000000 --- a/sci-chemistry/openbabel-python/ChangeLog +++ /dev/null @@ -1,103 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel-python -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-python/ChangeLog,v 1.24 2015/06/28 11:21:54 zlogene Exp $ - - 28 Jun 2015; Mikle Kolyada openbabel-python-2.3.2.ebuild: - x86 stable wrt bug #534618 - - 05 May 2015; Justin Lecher openbabel-python-2.3.2.ebuild: - Fix compilation problems, bug #547818 - - 02 Mar 2015; Agostino Sarubbo openbabel-python-2.3.2.ebuild: - Stable for ppc, wrt bug #534618 - - 31 Jan 2015; Agostino Sarubbo openbabel-python-2.3.2.ebuild: - Stable for amd64, wrt bug #534618 - - 11 Jan 2015; Justin Lecher openbabel-python-2.3.2.ebuild, - +files/openbabel-python-2.3.2-swig-3.0.3.patch: - Fix for swig-3.0.3, #536180 - - 11 Jan 2015; Jeroen Roovers - -files/openbabel-python-2.3.0-py3_iterator.patch, - -files/openbabel-python-2.3.0-swig.patch, - -files/openbabel-python-2.3.0-system_openbabel.patch, - -files/openbabel-python-2.3.0-wrap_OBInternalCoord.patch, - -files/openbabel-python-2.3.1-system_openbabel.patch: - Old. - - 04 Jan 2015; Justin Lecher -openbabel-python-2.3.0.ebuild, - -openbabel-python-2.3.1.ebuild, openbabel-python-2.3.2.ebuild: - Drop old - - 27 Oct 2014; Justin Lecher openbabel-python-2.3.2.ebuild: - Add support for py3_4 - - 13 Oct 2013; Pacho Ramos openbabel-python-2.3.2.ebuild: - Also compatible with python3_3 - - 05 Sep 2013; Michał Górny openbabel-python-2.3.2.ebuild: - Clean up PYTHON_COMPAT from old implementations. - - 02 Jul 2013; Justin Lecher openbabel-python-2.3.2.ebuild: - Exchange base_src_prepare() by cmake-utils_src_prepare(), #475520 - - 29 May 2013; Justin Lecher openbabel-python-2.3.2.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, - PYTHON_DEPS) - - 20 Feb 2013; Agostino Sarubbo openbabel-python-2.3.2.ebuild: - Add ~arm, wrt bug #455960 - - 08 Feb 2013; Agostino Sarubbo openbabel-python-2.3.2.ebuild: - Add ~ppc, wrt bug #455960 - - 23 Dec 2012; Justin Lecher openbabel-python-2.3.2.ebuild, - metadata.xml: - Add proposed enhancements by mgorny, #448118 - -*openbabel-python-2.3.2 (06 Dec 2012) - - 06 Dec 2012; Justin Lecher +openbabel-python-2.3.2.ebuild, - +files/openbabel-python-2.3.2-bindings_only.patch, - +files/openbabel-python-2.3.2-testpybel.patch: - Version Bump prepared by Reinis Danne, #439434 - -*openbabel-python-2.3.1 (04 Mar 2012) - - 04 Mar 2012; Justin Lecher openbabel-python-2.3.0.ebuild, - +openbabel-python-2.3.1.ebuild, - +files/openbabel-python-2.3.1-system_openbabel.patch: - Import Version Bump from sci overlay prepared by Reinis Danne; restrict pypy - - 14 Sep 2011; Justin Lecher openbabel-python-2.3.0.ebuild: - Corrected the right variable (DISTUTILS_SETUP_FILES) to an array, revert the - other (PYTHONMOD_NAME), thanks to Arfrever noticing the mistake - - 13 Sep 2011; Justin Lecher openbabel-python-2.3.0.ebuild, - metadata.xml: - Python.eclass wants an array - - 09 May 2011; Justin Lecher openbabel-python-2.3.0.ebuild: - Fix for Prefixed installation - - 28 Apr 2011; Arfrever Frehtes Taifersar Arahesis - openbabel-python-2.3.0.ebuild, - +files/openbabel-python-2.3.0-system_openbabel.patch: - Don't use cmake. Use system libopenbabel. - - 29 Mar 2011; Justin Lecher openbabel-python-2.3.0.ebuild: - Depend on >=swig-2 - - 28 Mar 2011; Justin Lecher openbabel-python-2.3.0.ebuild, - +files/openbabel-python-2.3.0-swig.patch: - Sane check for swig version, - https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= - 428740 - -*openbabel-python-2.3.0 (26 Mar 2011) - - 26 Mar 2011; Justin Lecher +openbabel-python-2.3.0.ebuild, - +files/openbabel-python-2.3.0-py3_iterator.patch, - +files/openbabel-python-2.3.0-wrap_OBInternalCoord.patch, +metadata.xml: - Python Bindings for openbabel, writing by rei4dan diff --git a/sci-chemistry/openbabel-python/ChangeLog-2015 b/sci-chemistry/openbabel-python/ChangeLog-2015 new file mode 100644 index 00000000..834f9bb3 --- /dev/null +++ b/sci-chemistry/openbabel-python/ChangeLog-2015 @@ -0,0 +1,103 @@ +# ChangeLog for sci-chemistry/openbabel-python +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel-python/ChangeLog,v 1.24 2015/06/28 11:21:54 zlogene Exp $ + + 28 Jun 2015; Mikle Kolyada openbabel-python-2.3.2.ebuild: + x86 stable wrt bug #534618 + + 05 May 2015; Justin Lecher openbabel-python-2.3.2.ebuild: + Fix compilation problems, bug #547818 + + 02 Mar 2015; Agostino Sarubbo openbabel-python-2.3.2.ebuild: + Stable for ppc, wrt bug #534618 + + 31 Jan 2015; Agostino Sarubbo openbabel-python-2.3.2.ebuild: + Stable for amd64, wrt bug #534618 + + 11 Jan 2015; Justin Lecher openbabel-python-2.3.2.ebuild, + +files/openbabel-python-2.3.2-swig-3.0.3.patch: + Fix for swig-3.0.3, #536180 + + 11 Jan 2015; Jeroen Roovers + -files/openbabel-python-2.3.0-py3_iterator.patch, + -files/openbabel-python-2.3.0-swig.patch, + -files/openbabel-python-2.3.0-system_openbabel.patch, + -files/openbabel-python-2.3.0-wrap_OBInternalCoord.patch, + -files/openbabel-python-2.3.1-system_openbabel.patch: + Old. + + 04 Jan 2015; Justin Lecher -openbabel-python-2.3.0.ebuild, + -openbabel-python-2.3.1.ebuild, openbabel-python-2.3.2.ebuild: + Drop old + + 27 Oct 2014; Justin Lecher openbabel-python-2.3.2.ebuild: + Add support for py3_4 + + 13 Oct 2013; Pacho Ramos openbabel-python-2.3.2.ebuild: + Also compatible with python3_3 + + 05 Sep 2013; Michał Górny openbabel-python-2.3.2.ebuild: + Clean up PYTHON_COMPAT from old implementations. + + 02 Jul 2013; Justin Lecher openbabel-python-2.3.2.ebuild: + Exchange base_src_prepare() by cmake-utils_src_prepare(), #475520 + + 29 May 2013; Justin Lecher openbabel-python-2.3.2.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, + PYTHON_DEPS) + + 20 Feb 2013; Agostino Sarubbo openbabel-python-2.3.2.ebuild: + Add ~arm, wrt bug #455960 + + 08 Feb 2013; Agostino Sarubbo openbabel-python-2.3.2.ebuild: + Add ~ppc, wrt bug #455960 + + 23 Dec 2012; Justin Lecher openbabel-python-2.3.2.ebuild, + metadata.xml: + Add proposed enhancements by mgorny, #448118 + +*openbabel-python-2.3.2 (06 Dec 2012) + + 06 Dec 2012; Justin Lecher +openbabel-python-2.3.2.ebuild, + +files/openbabel-python-2.3.2-bindings_only.patch, + +files/openbabel-python-2.3.2-testpybel.patch: + Version Bump prepared by Reinis Danne, #439434 + +*openbabel-python-2.3.1 (04 Mar 2012) + + 04 Mar 2012; Justin Lecher openbabel-python-2.3.0.ebuild, + +openbabel-python-2.3.1.ebuild, + +files/openbabel-python-2.3.1-system_openbabel.patch: + Import Version Bump from sci overlay prepared by Reinis Danne; restrict pypy + + 14 Sep 2011; Justin Lecher openbabel-python-2.3.0.ebuild: + Corrected the right variable (DISTUTILS_SETUP_FILES) to an array, revert the + other (PYTHONMOD_NAME), thanks to Arfrever noticing the mistake + + 13 Sep 2011; Justin Lecher openbabel-python-2.3.0.ebuild, + metadata.xml: + Python.eclass wants an array + + 09 May 2011; Justin Lecher openbabel-python-2.3.0.ebuild: + Fix for Prefixed installation + + 28 Apr 2011; Arfrever Frehtes Taifersar Arahesis + openbabel-python-2.3.0.ebuild, + +files/openbabel-python-2.3.0-system_openbabel.patch: + Don't use cmake. Use system libopenbabel. + + 29 Mar 2011; Justin Lecher openbabel-python-2.3.0.ebuild: + Depend on >=swig-2 + + 28 Mar 2011; Justin Lecher openbabel-python-2.3.0.ebuild, + +files/openbabel-python-2.3.0-swig.patch: + Sane check for swig version, + https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= + 428740 + +*openbabel-python-2.3.0 (26 Mar 2011) + + 26 Mar 2011; Justin Lecher +openbabel-python-2.3.0.ebuild, + +files/openbabel-python-2.3.0-py3_iterator.patch, + +files/openbabel-python-2.3.0-wrap_OBInternalCoord.patch, +metadata.xml: + Python Bindings for openbabel, writing by rei4dan diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog deleted file mode 100644 index aa696d30..00000000 --- a/sci-chemistry/openbabel/ChangeLog +++ /dev/null @@ -1,314 +0,0 @@ -# ChangeLog for sci-chemistry/openbabel -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.69 2015/06/28 19:17:54 jlec Exp $ - - 28 Jun 2015; Justin Lecher metadata.xml: - Drop unused local USE-description: 'swig' - - 28 Jun 2015; Justin Lecher - -files/openbabel-2.2.0-doxyfile.patch, -files/openbabel-2.3.0-swig.patch, - -files/openbabel-2.3.0-test_lib_path.patch, -openbabel-2.2.3.ebuild: - Drop old - - 28 Jun 2015; Mikle Kolyada openbabel-2.3.2.ebuild: - x86 stable wrt bug #534612 - - 02 Mar 2015; Agostino Sarubbo openbabel-2.3.2.ebuild: - Stable for ppc, wrt bug #534612 - - 31 Jan 2015; Agostino Sarubbo openbabel-2.3.2.ebuild: - Stable for amd64, wrt bug #534612 - - 04 Jan 2015; Justin Lecher -openbabel-2.3.0.ebuild, - -openbabel-2.3.1.ebuild, openbabel-2.3.2.ebuild, metadata.xml: - Drop old; drop PDEPEND in favour of optfeature() - - 20 Feb 2013; Agostino Sarubbo openbabel-2.3.2.ebuild: - Add ~arm, wrt bug #455960 - - 08 Feb 2013; Agostino Sarubbo openbabel-2.3.2.ebuild: - Add ~ppc, wrt bug #455960 - -*openbabel-2.3.2 (06 Dec 2012) - - 06 Dec 2012; Justin Lecher +openbabel-2.3.2.ebuild, - +files/openbabel-2.3.2-test_lib_path.patch: - Version Bump prepared by Reinis Danne, #439434 - - 26 Apr 2012; Justin Lecher openbabel-2.2.3.ebuild: - Drop unnessecary die - - 04 Mar 2012; Justin Lecher openbabel-2.3.1.ebuild: - Clean residual die and other comments - -*openbabel-2.3.1 (04 Mar 2012) - - 04 Mar 2012; Justin Lecher +openbabel-2.3.1.ebuild, - metadata.xml: - Import Version Bump from sci overlay prepared by Reinis Danne - - 21 Nov 2011; Justin Lecher openbabel-2.3.0.ebuild: - keyworded for ~ppc-macos, tested by Johan Hattne #352642 - - 16 Jun 2011; Jeroen Roovers openbabel-2.2.3.ebuild: - Drop HPPA keywording (bug #360573). - - 14 Jun 2011; Justin Lecher - files/openbabel-2.3.0-swig.patch: - Fixed empty swig patch, thanks matts88 - - 07 May 2011; Justin Lecher openbabel-2.3.0.ebuild: - Do not test things which are installed as PDEPEND like openbabel-python - - 30 Apr 2011; Raúl Porcel openbabel-2.2.3.ebuild: - Drop sparc keywords - - 28 Apr 2011; Arfrever Frehtes Taifersar Arahesis - openbabel-2.3.0.ebuild: - Fix circular dependencies. - - 28 Mar 2011; Justin Lecher openbabel-2.3.0.ebuild, - +files/openbabel-2.3.0-swig.patch: - Sane check for swig version, - https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= - 428740 - - 26 Mar 2011; Justin Lecher openbabel-2.2.3.ebuild: - Block sci-chemistry/openbabel-{python,perl} - - 26 Mar 2011; Justin Lecher openbabel-2.3.0.ebuild: - Added perl & python USE - -*openbabel-2.3.0 (26 Mar 2011) - - 26 Mar 2011; Justin Lecher +openbabel-2.3.0.ebuild, - +files/openbabel-2.3.0-test_lib_path.patch: - Version Bump, mainly prepared by rei4dan, #345093 - - 02 Mar 2011; Justin Lecher openbabel-2.2.3.ebuild: - Correct Slots for gtk 3 introduction to tree - - 18 Jul 2010; Justin Lecher -openbabel-2.2.1.ebuild, - -openbabel-2.2.2-r1.ebuild: - QA, cleaned old/broken versions - - 18 Jul 2010; Raúl Porcel openbabel-2.2.3.ebuild: - sparc stable wrt #324283 - - 18 Jul 2010; openbabel-2.2.3.ebuild: - ppc stable #324283 - - 09 Jul 2010; Samuli Suominen - openbabel-2.2.3.ebuild: - ppc64 stable wrt #324283 - - 07 Jul 2010; Christian Faulhammer - openbabel-2.2.3.ebuild: - stable x86, bug 324283 - - 01 Jul 2010; Jeroen Roovers openbabel-2.2.3.ebuild: - Stable for HPPA (bug #324283). - - 28 Jun 2010; Justin Lecher openbabel-2.2.3.ebuild: - Keyworded for *-linux prefix - - 24 Jun 2010; Pacho Ramos openbabel-2.2.3.ebuild: - stable amd64, bug 324283 - - 19 Jun 2010; Kacper Kowalik - openbabel-2.2.3.ebuild: - Fix docs install wrt bug 322543. Thanks Juergen Rose - for reporting - - 20 May 2010; Justin Lecher openbabel-2.2.2-r1.ebuild, - openbabel-2.2.3.ebuild: - Fixes for PYTHON ABI, #316179 - - 19 Jan 2010; Jeroen Roovers openbabel-2.2.1.ebuild: - Stable for HPPA too. - - 26 Dec 2009; Raúl Porcel openbabel-2.2.1.ebuild: - sparc stable wrt #288413 - - 30 Nov 2009; Joseph Jezak openbabel-2.2.1.ebuild: - Marked ppc64 stable. - - 17 Oct 2009; Markus Meier openbabel-2.2.1.ebuild: - x86 stable, bug #288413 - - 11 Oct 2009; nixnut openbabel-2.2.1.ebuild: - ppc stable #288413 - - 10 Oct 2009; Samuli Suominen - openbabel-2.2.1.ebuild: - amd64 stable wrt #287697 - - 01 Aug 2009; Marcus D. Hanwell -openbabel-2.1.1.ebuild, - -openbabel-2.2.0.ebuild, - -files/openbabel-2.2.0_beta4-obconversion_api_fix.diff, - -openbabel-2.2.2.ebuild: - Removed old versions that are no longer required. - -*openbabel-2.2.3 (01 Aug 2009) - - 01 Aug 2009; Marcus D. Hanwell +openbabel-2.2.3.ebuild: - Version bump. - -*openbabel-2.2.2-r1 (24 Jul 2009) - - 24 Jul 2009; Marcus D. Hanwell - +openbabel-2.2.2-r1.ebuild, metadata.xml: - Added python use flag to optionally build python language bindings. Thanks - to My Th for suggestions in bug 212212. - -*openbabel-2.2.2 (18 Jul 2009) - - 18 Jul 2009; Marcus D. Hanwell +openbabel-2.2.2.ebuild: - Version bump. - - 13 Jun 2009; Torsten Veller openbabel-2.2.1.ebuild: - Add missing die: "..." -> die "..." - - 18 Apr 2009; Jeroen Roovers openbabel-2.2.1: - Marked ~hppa (bug #260777). - -*openbabel-2.2.1 (02 Mar 2009) - - 02 Mar 2009; Marcus D. Hanwell - -openbabel-2.2.1_beta3-r1.ebuild, +openbabel-2.2.1.ebuild: - Version bump, removed old beta. - - 01 Mar 2009; Marcus D. Hanwell - +files/openbabel-2.2.0-doxyfile.patch: - Added missing patch file, sorry. - -*openbabel-2.2.1_beta3-r1 (28 Feb 2009) - - 28 Feb 2009; Marcus D. Hanwell - -openbabel-2.2.1_beta3.ebuild, +openbabel-2.2.1_beta3-r1.ebuild: - Integrated some improvements from My Th in bug 212212. - -*openbabel-2.2.1_beta3 (18 Feb 2009) - - 18 Feb 2009; Marcus D. Hanwell - -openbabel-2.2.0_beta5.ebuild, +openbabel-2.2.1_beta3.ebuild: - Removed old version, added updated version of upcoming patch release. - - 02 Nov 2008; Mike Frysinger openbabel-2.2.0.ebuild: - Add ppc64 love for KDE 4. - -*openbabel-2.2.0 (06 Jul 2008) - - 06 Jul 2008; Markus Dittrich openbabel-2.0.2.ebuild, - -openbabel-2.1.0.ebuild, openbabel-2.1.1.ebuild, - -openbabel-2.2.0_beta4-r1.ebuild, +openbabel-2.2.0.ebuild: - Version bump (fixes bug #230803). Removed old ebuilds. - -*openbabel-2.2.0_beta5 (19 May 2008) - - 19 May 2008; Marcus D. Hanwell - +openbabel-2.2.0_beta5.ebuild: - Version bump. - - 27 Apr 2008; Marcus D. Hanwell - -openbabel-2.2.0_beta4.ebuild: - Removed in favour of newer revision. - -*openbabel-2.2.0_beta4-r1 (21 Apr 2008) - - 21 Apr 2008; Marcus D. Hanwell - +files/openbabel-2.2.0_beta4-obconversion_api_fix.diff, - +openbabel-2.2.0_beta4-r1.ebuild: - Bug 216057 - added back in missing API element. - -*openbabel-2.2.0_beta4 (01 Mar 2008) - - 01 Mar 2008; Marcus D. Hanwell - +openbabel-2.2.0_beta4.ebuild: - Version bump. - -*openbabel-2.1.1 (11 Jul 2007) - - 11 Jul 2007; Marcus D. Hanwell +openbabel-2.1.1.ebuild: - Version bump. - -*openbabel-2.1.0 (08 Apr 2007) - - 08 Apr 2007; Marcus D. Hanwell metadata.xml, - +openbabel-2.1.0.ebuild: - Version bump and added a longdescription in metadata. - - 07 Jan 2007; Danny van Dyk - -openbabel-1.100.2.ebuild, -openbabel-2.0.1.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 28 Aug 2006; Gustavo Zacarias - openbabel-2.0.2.ebuild: - Stable on sparc - - 23 Aug 2006; openbabel-2.0.2.ebuild: - stable on amd64 - - 20 Aug 2006; Donnie Berkholz ; - openbabel-2.0.2.ebuild: - Stable on x86/ppc. - - 03 Aug 2006; Gustavo Zacarias - openbabel-2.0.1.ebuild: - Stable on sparc - -*openbabel-2.0.2 (25 Jul 2006) - - 25 Jul 2006; Patrick Kursawe - +openbabel-2.0.2.ebuild: - Version bump - - 09 Jul 2006; Donnie Berkholz ; - openbabel-2.0.1.ebuild: - x86/ppc stable. - -*openbabel-2.0.1 (13 May 2006) - - 13 May 2006; Donnie Berkholz ; - +openbabel-2.0.1.ebuild: - Bump. Many of the changes are internal, to help adding new translators etc. - Also adds support for Perl and Python scripting, better batch conversion, - support for reading gzipped files and support for InChI identifiers. - -*openbabel-1.100.2 (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +openbabel-1.100.2.ebuild: - Moved from app-sci/openbabel to sci-chemistry/openbabel. - - 06 Jun 2004; Danny van Dyk openbabel-1.100.2.ebuild: - Marked stable on amd64. - - 15 May 2004; Danny van Dyk openbabel-1.100.2.ebuild: - Marked ~amd64. - - 01 Apr 2004; Patrick Kursawe openbabel-1.100.1.ebuild: - Cleanup - - 01 Apr 2004; Patrick Kursawe openbabel-1.100.2.ebuild: - Stable for ppc - - 24 Feb 2004; Luca Barbato openbabel-1.100.2.ebuild: - Marked ~ppc - -*openbabel-1.100.2 (24 Feb 2004) - - 24 Feb 2004; Patrick Kursawe openbabel-1.100.2.ebuild: - Version bump - - 16 Dec 2003; Jason Wever openbabel-1.100.1.ebuild: - Added ~sparc keyword to fix broken dependencies in app-sci/xdrawchem. - -*openbabel-1.100.1 (24 Sep 2003) - - 24 Sep 2003; Patrick Kursawe metadata.xml, - openbabel-1.100.1.ebuild: - Initial import, modified from bug 28536 diff --git a/sci-chemistry/openbabel/ChangeLog-2015 b/sci-chemistry/openbabel/ChangeLog-2015 new file mode 100644 index 00000000..aa696d30 --- /dev/null +++ b/sci-chemistry/openbabel/ChangeLog-2015 @@ -0,0 +1,314 @@ +# ChangeLog for sci-chemistry/openbabel +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.69 2015/06/28 19:17:54 jlec Exp $ + + 28 Jun 2015; Justin Lecher metadata.xml: + Drop unused local USE-description: 'swig' + + 28 Jun 2015; Justin Lecher + -files/openbabel-2.2.0-doxyfile.patch, -files/openbabel-2.3.0-swig.patch, + -files/openbabel-2.3.0-test_lib_path.patch, -openbabel-2.2.3.ebuild: + Drop old + + 28 Jun 2015; Mikle Kolyada openbabel-2.3.2.ebuild: + x86 stable wrt bug #534612 + + 02 Mar 2015; Agostino Sarubbo openbabel-2.3.2.ebuild: + Stable for ppc, wrt bug #534612 + + 31 Jan 2015; Agostino Sarubbo openbabel-2.3.2.ebuild: + Stable for amd64, wrt bug #534612 + + 04 Jan 2015; Justin Lecher -openbabel-2.3.0.ebuild, + -openbabel-2.3.1.ebuild, openbabel-2.3.2.ebuild, metadata.xml: + Drop old; drop PDEPEND in favour of optfeature() + + 20 Feb 2013; Agostino Sarubbo openbabel-2.3.2.ebuild: + Add ~arm, wrt bug #455960 + + 08 Feb 2013; Agostino Sarubbo openbabel-2.3.2.ebuild: + Add ~ppc, wrt bug #455960 + +*openbabel-2.3.2 (06 Dec 2012) + + 06 Dec 2012; Justin Lecher +openbabel-2.3.2.ebuild, + +files/openbabel-2.3.2-test_lib_path.patch: + Version Bump prepared by Reinis Danne, #439434 + + 26 Apr 2012; Justin Lecher openbabel-2.2.3.ebuild: + Drop unnessecary die + + 04 Mar 2012; Justin Lecher openbabel-2.3.1.ebuild: + Clean residual die and other comments + +*openbabel-2.3.1 (04 Mar 2012) + + 04 Mar 2012; Justin Lecher +openbabel-2.3.1.ebuild, + metadata.xml: + Import Version Bump from sci overlay prepared by Reinis Danne + + 21 Nov 2011; Justin Lecher openbabel-2.3.0.ebuild: + keyworded for ~ppc-macos, tested by Johan Hattne #352642 + + 16 Jun 2011; Jeroen Roovers openbabel-2.2.3.ebuild: + Drop HPPA keywording (bug #360573). + + 14 Jun 2011; Justin Lecher + files/openbabel-2.3.0-swig.patch: + Fixed empty swig patch, thanks matts88 + + 07 May 2011; Justin Lecher openbabel-2.3.0.ebuild: + Do not test things which are installed as PDEPEND like openbabel-python + + 30 Apr 2011; Raúl Porcel openbabel-2.2.3.ebuild: + Drop sparc keywords + + 28 Apr 2011; Arfrever Frehtes Taifersar Arahesis + openbabel-2.3.0.ebuild: + Fix circular dependencies. + + 28 Mar 2011; Justin Lecher openbabel-2.3.0.ebuild, + +files/openbabel-2.3.0-swig.patch: + Sane check for swig version, + https://sourceforge.net/tracker/?func=detail&aid=3253693&group_id=40728&atid= + 428740 + + 26 Mar 2011; Justin Lecher openbabel-2.2.3.ebuild: + Block sci-chemistry/openbabel-{python,perl} + + 26 Mar 2011; Justin Lecher openbabel-2.3.0.ebuild: + Added perl & python USE + +*openbabel-2.3.0 (26 Mar 2011) + + 26 Mar 2011; Justin Lecher +openbabel-2.3.0.ebuild, + +files/openbabel-2.3.0-test_lib_path.patch: + Version Bump, mainly prepared by rei4dan, #345093 + + 02 Mar 2011; Justin Lecher openbabel-2.2.3.ebuild: + Correct Slots for gtk 3 introduction to tree + + 18 Jul 2010; Justin Lecher -openbabel-2.2.1.ebuild, + -openbabel-2.2.2-r1.ebuild: + QA, cleaned old/broken versions + + 18 Jul 2010; Raúl Porcel openbabel-2.2.3.ebuild: + sparc stable wrt #324283 + + 18 Jul 2010; openbabel-2.2.3.ebuild: + ppc stable #324283 + + 09 Jul 2010; Samuli Suominen + openbabel-2.2.3.ebuild: + ppc64 stable wrt #324283 + + 07 Jul 2010; Christian Faulhammer + openbabel-2.2.3.ebuild: + stable x86, bug 324283 + + 01 Jul 2010; Jeroen Roovers openbabel-2.2.3.ebuild: + Stable for HPPA (bug #324283). + + 28 Jun 2010; Justin Lecher openbabel-2.2.3.ebuild: + Keyworded for *-linux prefix + + 24 Jun 2010; Pacho Ramos openbabel-2.2.3.ebuild: + stable amd64, bug 324283 + + 19 Jun 2010; Kacper Kowalik + openbabel-2.2.3.ebuild: + Fix docs install wrt bug 322543. Thanks Juergen Rose + for reporting + + 20 May 2010; Justin Lecher openbabel-2.2.2-r1.ebuild, + openbabel-2.2.3.ebuild: + Fixes for PYTHON ABI, #316179 + + 19 Jan 2010; Jeroen Roovers openbabel-2.2.1.ebuild: + Stable for HPPA too. + + 26 Dec 2009; Raúl Porcel openbabel-2.2.1.ebuild: + sparc stable wrt #288413 + + 30 Nov 2009; Joseph Jezak openbabel-2.2.1.ebuild: + Marked ppc64 stable. + + 17 Oct 2009; Markus Meier openbabel-2.2.1.ebuild: + x86 stable, bug #288413 + + 11 Oct 2009; nixnut openbabel-2.2.1.ebuild: + ppc stable #288413 + + 10 Oct 2009; Samuli Suominen + openbabel-2.2.1.ebuild: + amd64 stable wrt #287697 + + 01 Aug 2009; Marcus D. Hanwell -openbabel-2.1.1.ebuild, + -openbabel-2.2.0.ebuild, + -files/openbabel-2.2.0_beta4-obconversion_api_fix.diff, + -openbabel-2.2.2.ebuild: + Removed old versions that are no longer required. + +*openbabel-2.2.3 (01 Aug 2009) + + 01 Aug 2009; Marcus D. Hanwell +openbabel-2.2.3.ebuild: + Version bump. + +*openbabel-2.2.2-r1 (24 Jul 2009) + + 24 Jul 2009; Marcus D. Hanwell + +openbabel-2.2.2-r1.ebuild, metadata.xml: + Added python use flag to optionally build python language bindings. Thanks + to My Th for suggestions in bug 212212. + +*openbabel-2.2.2 (18 Jul 2009) + + 18 Jul 2009; Marcus D. Hanwell +openbabel-2.2.2.ebuild: + Version bump. + + 13 Jun 2009; Torsten Veller openbabel-2.2.1.ebuild: + Add missing die: "..." -> die "..." + + 18 Apr 2009; Jeroen Roovers openbabel-2.2.1: + Marked ~hppa (bug #260777). + +*openbabel-2.2.1 (02 Mar 2009) + + 02 Mar 2009; Marcus D. Hanwell + -openbabel-2.2.1_beta3-r1.ebuild, +openbabel-2.2.1.ebuild: + Version bump, removed old beta. + + 01 Mar 2009; Marcus D. Hanwell + +files/openbabel-2.2.0-doxyfile.patch: + Added missing patch file, sorry. + +*openbabel-2.2.1_beta3-r1 (28 Feb 2009) + + 28 Feb 2009; Marcus D. Hanwell + -openbabel-2.2.1_beta3.ebuild, +openbabel-2.2.1_beta3-r1.ebuild: + Integrated some improvements from My Th in bug 212212. + +*openbabel-2.2.1_beta3 (18 Feb 2009) + + 18 Feb 2009; Marcus D. Hanwell + -openbabel-2.2.0_beta5.ebuild, +openbabel-2.2.1_beta3.ebuild: + Removed old version, added updated version of upcoming patch release. + + 02 Nov 2008; Mike Frysinger openbabel-2.2.0.ebuild: + Add ppc64 love for KDE 4. + +*openbabel-2.2.0 (06 Jul 2008) + + 06 Jul 2008; Markus Dittrich openbabel-2.0.2.ebuild, + -openbabel-2.1.0.ebuild, openbabel-2.1.1.ebuild, + -openbabel-2.2.0_beta4-r1.ebuild, +openbabel-2.2.0.ebuild: + Version bump (fixes bug #230803). Removed old ebuilds. + +*openbabel-2.2.0_beta5 (19 May 2008) + + 19 May 2008; Marcus D. Hanwell + +openbabel-2.2.0_beta5.ebuild: + Version bump. + + 27 Apr 2008; Marcus D. Hanwell + -openbabel-2.2.0_beta4.ebuild: + Removed in favour of newer revision. + +*openbabel-2.2.0_beta4-r1 (21 Apr 2008) + + 21 Apr 2008; Marcus D. Hanwell + +files/openbabel-2.2.0_beta4-obconversion_api_fix.diff, + +openbabel-2.2.0_beta4-r1.ebuild: + Bug 216057 - added back in missing API element. + +*openbabel-2.2.0_beta4 (01 Mar 2008) + + 01 Mar 2008; Marcus D. Hanwell + +openbabel-2.2.0_beta4.ebuild: + Version bump. + +*openbabel-2.1.1 (11 Jul 2007) + + 11 Jul 2007; Marcus D. Hanwell +openbabel-2.1.1.ebuild: + Version bump. + +*openbabel-2.1.0 (08 Apr 2007) + + 08 Apr 2007; Marcus D. Hanwell metadata.xml, + +openbabel-2.1.0.ebuild: + Version bump and added a longdescription in metadata. + + 07 Jan 2007; Danny van Dyk + -openbabel-1.100.2.ebuild, -openbabel-2.0.1.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 28 Aug 2006; Gustavo Zacarias + openbabel-2.0.2.ebuild: + Stable on sparc + + 23 Aug 2006; openbabel-2.0.2.ebuild: + stable on amd64 + + 20 Aug 2006; Donnie Berkholz ; + openbabel-2.0.2.ebuild: + Stable on x86/ppc. + + 03 Aug 2006; Gustavo Zacarias + openbabel-2.0.1.ebuild: + Stable on sparc + +*openbabel-2.0.2 (25 Jul 2006) + + 25 Jul 2006; Patrick Kursawe + +openbabel-2.0.2.ebuild: + Version bump + + 09 Jul 2006; Donnie Berkholz ; + openbabel-2.0.1.ebuild: + x86/ppc stable. + +*openbabel-2.0.1 (13 May 2006) + + 13 May 2006; Donnie Berkholz ; + +openbabel-2.0.1.ebuild: + Bump. Many of the changes are internal, to help adding new translators etc. + Also adds support for Perl and Python scripting, better batch conversion, + support for reading gzipped files and support for InChI identifiers. + +*openbabel-1.100.2 (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +openbabel-1.100.2.ebuild: + Moved from app-sci/openbabel to sci-chemistry/openbabel. + + 06 Jun 2004; Danny van Dyk openbabel-1.100.2.ebuild: + Marked stable on amd64. + + 15 May 2004; Danny van Dyk openbabel-1.100.2.ebuild: + Marked ~amd64. + + 01 Apr 2004; Patrick Kursawe openbabel-1.100.1.ebuild: + Cleanup + + 01 Apr 2004; Patrick Kursawe openbabel-1.100.2.ebuild: + Stable for ppc + + 24 Feb 2004; Luca Barbato openbabel-1.100.2.ebuild: + Marked ~ppc + +*openbabel-1.100.2 (24 Feb 2004) + + 24 Feb 2004; Patrick Kursawe openbabel-1.100.2.ebuild: + Version bump + + 16 Dec 2003; Jason Wever openbabel-1.100.1.ebuild: + Added ~sparc keyword to fix broken dependencies in app-sci/xdrawchem. + +*openbabel-1.100.1 (24 Sep 2003) + + 24 Sep 2003; Patrick Kursawe metadata.xml, + openbabel-1.100.1.ebuild: + Initial import, modified from bug 28536 diff --git a/sci-chemistry/ortep3/ChangeLog b/sci-chemistry/ortep3/ChangeLog deleted file mode 100644 index 6925e5cc..00000000 --- a/sci-chemistry/ortep3/ChangeLog +++ /dev/null @@ -1,46 +0,0 @@ -# ChangeLog for sci-chemistry/ortep3 -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ortep3/ChangeLog,v 1.11 2012/10/19 10:05:36 jlec Exp $ - - 19 Oct 2012; Justin Lecher ortep3-1.0.3-r1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher ortep3-1.0.3-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher ortep3-1.0.3-r1.ebuild: - Added fortran-2.eclass support - - 16 Dec 2010; Justin Lecher ortep3-1.0.3-r1.ebuild: - Removal of fortran.eclass, #348851 - -*ortep3-1.0.3-r1 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher -ortep3-1.0.3.ebuild, - +ortep3-1.0.3-r1.ebuild: - Fix for recent fortran compilers, #272577 - - 22 Jul 2007; Donnie Berkholz ; ortep3-1.0.3.ebuild: - Drop virtual/x11 references. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*ortep3-1.0.3 (16 Dec 2005) - - 16 Dec 2005; Donnie Berkholz ; +metadata.xml, - +ortep3-1.0.3.ebuild: - Thermal ellipsoid plot program for crystal structure illustrations. - diff --git a/sci-chemistry/ortep3/ChangeLog-2015 b/sci-chemistry/ortep3/ChangeLog-2015 new file mode 100644 index 00000000..6925e5cc --- /dev/null +++ b/sci-chemistry/ortep3/ChangeLog-2015 @@ -0,0 +1,46 @@ +# ChangeLog for sci-chemistry/ortep3 +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ortep3/ChangeLog,v 1.11 2012/10/19 10:05:36 jlec Exp $ + + 19 Oct 2012; Justin Lecher ortep3-1.0.3-r1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher ortep3-1.0.3-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher ortep3-1.0.3-r1.ebuild: + Added fortran-2.eclass support + + 16 Dec 2010; Justin Lecher ortep3-1.0.3-r1.ebuild: + Removal of fortran.eclass, #348851 + +*ortep3-1.0.3-r1 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher -ortep3-1.0.3.ebuild, + +ortep3-1.0.3-r1.ebuild: + Fix for recent fortran compilers, #272577 + + 22 Jul 2007; Donnie Berkholz ; ortep3-1.0.3.ebuild: + Drop virtual/x11 references. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*ortep3-1.0.3 (16 Dec 2005) + + 16 Dec 2005; Donnie Berkholz ; +metadata.xml, + +ortep3-1.0.3.ebuild: + Thermal ellipsoid plot program for crystal structure illustrations. + diff --git a/sci-chemistry/p3d/ChangeLog b/sci-chemistry/p3d/ChangeLog deleted file mode 100644 index 8e6cccc1..00000000 --- a/sci-chemistry/p3d/ChangeLog +++ /dev/null @@ -1,24 +0,0 @@ -# ChangeLog for sci-chemistry/p3d -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/p3d/ChangeLog,v 1.4 2011/06/26 08:46:21 jlec Exp $ - - 26 Jun 2011; Justin Lecher p3d-0.4.3.ebuild, - p3d-9999.ebuild, metadata.xml: - migrate from 'git' to 'git-2' - -*p3d-0.4.3 (11 Mar 2011) - - 11 Mar 2011; Justin Lecher +p3d-0.4.3.ebuild, - -p3d-0.4.3.0.ebuild: - Corrected to upstream Version, thanks flameeyes for telling me how - - 11 Mar 2011; Justin Lecher p3d-0.4.3.0.ebuild: - MIrrored tarball, #358289 - -*p3d-9999 (09 Mar 2011) -*p3d-0.4.3.0 (09 Mar 2011) - - 09 Mar 2011; Justin Lecher +p3d-0.4.3.0.ebuild, - +p3d-9999.ebuild, +metadata.xml: - New addition, written by me - diff --git a/sci-chemistry/p3d/ChangeLog-2015 b/sci-chemistry/p3d/ChangeLog-2015 new file mode 100644 index 00000000..8e6cccc1 --- /dev/null +++ b/sci-chemistry/p3d/ChangeLog-2015 @@ -0,0 +1,24 @@ +# ChangeLog for sci-chemistry/p3d +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/p3d/ChangeLog,v 1.4 2011/06/26 08:46:21 jlec Exp $ + + 26 Jun 2011; Justin Lecher p3d-0.4.3.ebuild, + p3d-9999.ebuild, metadata.xml: + migrate from 'git' to 'git-2' + +*p3d-0.4.3 (11 Mar 2011) + + 11 Mar 2011; Justin Lecher +p3d-0.4.3.ebuild, + -p3d-0.4.3.0.ebuild: + Corrected to upstream Version, thanks flameeyes for telling me how + + 11 Mar 2011; Justin Lecher p3d-0.4.3.0.ebuild: + MIrrored tarball, #358289 + +*p3d-9999 (09 Mar 2011) +*p3d-0.4.3.0 (09 Mar 2011) + + 09 Mar 2011; Justin Lecher +p3d-0.4.3.0.ebuild, + +p3d-9999.ebuild, +metadata.xml: + New addition, written by me + diff --git a/sci-chemistry/parassign/ChangeLog b/sci-chemistry/parassign/ChangeLog deleted file mode 100644 index a73c410a..00000000 --- a/sci-chemistry/parassign/ChangeLog +++ /dev/null @@ -1,18 +0,0 @@ -# ChangeLog for sci-chemistry/parassign -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/parassign/ChangeLog,v 1.4 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny parassign-20130522.ebuild: - Drop old Python implementations - - 04 Jun 2013; Justin Lecher parassign-20130522.ebuild: - Fix deps for new python eclasses - - 23 May 2013; Zac Medico parassign-20130522.ebuild: - Set RESTRICT=fetch, since SRC_URI is unfetchable. - -*parassign-20130522 (22 May 2013) - - 22 May 2013; Justin Lecher +parassign-20130522.ebuild, - +metadata.xml: - New addition diff --git a/sci-chemistry/parassign/ChangeLog-2015 b/sci-chemistry/parassign/ChangeLog-2015 new file mode 100644 index 00000000..a73c410a --- /dev/null +++ b/sci-chemistry/parassign/ChangeLog-2015 @@ -0,0 +1,18 @@ +# ChangeLog for sci-chemistry/parassign +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/parassign/ChangeLog,v 1.4 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny parassign-20130522.ebuild: + Drop old Python implementations + + 04 Jun 2013; Justin Lecher parassign-20130522.ebuild: + Fix deps for new python eclasses + + 23 May 2013; Zac Medico parassign-20130522.ebuild: + Set RESTRICT=fetch, since SRC_URI is unfetchable. + +*parassign-20130522 (22 May 2013) + + 22 May 2013; Justin Lecher +parassign-20130522.ebuild, + +metadata.xml: + New addition diff --git a/sci-chemistry/pdb-extract/ChangeLog b/sci-chemistry/pdb-extract/ChangeLog deleted file mode 100644 index 2fbf3987..00000000 --- a/sci-chemistry/pdb-extract/ChangeLog +++ /dev/null @@ -1,99 +0,0 @@ -# ChangeLog for sci-chemistry/pdb-extract -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.21 2012/06/23 18:57:05 jlec Exp $ - -*pdb-extract-3.11 (23 Jun 2012) - - 23 Jun 2012; Justin Lecher +pdb-extract-3.11.ebuild, - +files/pdb-extract-3.11-cflags-install.patch, - +files/pdb-extract-3.11-gcc-4.7.patch: - Version Bump, #379159 - - 24 Apr 2012; Justin Lecher - -files/respect-cflags-and-fix-install.patch: - Drop old patch - - 24 Apr 2012; Justin Lecher -pdb-extract-1.700.ebuild, - -pdb-extract-3.004-r1.ebuild: - Drop old - - 24 Apr 2012; Justin Lecher Manifest: - Drop old - - 01 Aug 2011; Markus Meier pdb-extract-3.004-r2.ebuild: - amd64/x86 stable, bug #375901 - - 21 Jul 2011; Justin Lecher pdb-extract-1.700.ebuild, - pdb-extract-3.004-r1.ebuild, pdb-extract-3.004-r2.ebuild, metadata.xml: - Some cleanup - -*pdb-extract-3.004-r2 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher +pdb-extract-3.004-r2.ebuild, - files/pdb-extract-3.004-cflags-install.patch: - qa and adopted to bug 314053 - -*pdb-extract-3.004-r1 (25 Apr 2010) - - 25 Apr 2010; Justin Lecher -pdb-extract-3.004.ebuild, - +pdb-extract-3.004-r1.ebuild: - Add missing prefix.eclass - - 05 Apr 2010; Justin Lecher pdb-extract-3.004.ebuild, - files/pdb-extract-3.004-Makefile.patch, - files/pdb-extract-3.004-cflags-install.patch: - Keyworded for ~x86-linux ~amd64-linux, tested by me - - 10 Feb 2010; Torsten Veller pdb-extract-3.004.ebuild: - Add missing die: || "..." -> || die "..." - -*pdb-extract-3.004 (04 Dec 2009) - - 04 Dec 2009; Markus Dittrich - +pdb-extract-3.004.ebuild, +files/pdb-extract-3.004-Makefile.patch, - +files/pdb-extract-3.004-cflags-install.patch, - +files/pdb-extract-3.004-env.patch, - +files/pdb-extract-3.004-gcc-4.3.patch: - Version bump (fixes #246255). Thanks much to Justin Lecher (jlec) - for preparing the ebuild and patches. - - 02 Jul 2008; Donnie Berkholz ; - pdb-extract-1.700.ebuild: - die on failure to install files. - - 08 Apr 2008; Donnie Berkholz ; - pdb-extract-1.700.ebuild: - Keyword ~amd64, fix quoting. - - 15 Mar 2007; Danny van Dyk - pdb-extract-1.700.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 26 Sep 2006; Donnie Berkholz ; - pdb-extract-1.700.ebuild: - Stable on x86/ppc. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 26 Apr 2006; Donnie Berkholz ; - pdb-extract-1.700.ebuild: - Keyword ~ppc. - - 24 Apr 2006; Donnie Berkholz ; ChangeLog: - Keyword ~ppc. - -*pdb-extract-1.700 (20 Dec 2005) - - 20 Dec 2005; Donnie Berkholz ; - +files/respect-cflags-and-fix-install.patch, +metadata.xml, - +pdb-extract-1.700.ebuild: - Extract lots of information from Protein Data Bank files. - diff --git a/sci-chemistry/pdb-extract/ChangeLog-2015 b/sci-chemistry/pdb-extract/ChangeLog-2015 new file mode 100644 index 00000000..2fbf3987 --- /dev/null +++ b/sci-chemistry/pdb-extract/ChangeLog-2015 @@ -0,0 +1,99 @@ +# ChangeLog for sci-chemistry/pdb-extract +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.21 2012/06/23 18:57:05 jlec Exp $ + +*pdb-extract-3.11 (23 Jun 2012) + + 23 Jun 2012; Justin Lecher +pdb-extract-3.11.ebuild, + +files/pdb-extract-3.11-cflags-install.patch, + +files/pdb-extract-3.11-gcc-4.7.patch: + Version Bump, #379159 + + 24 Apr 2012; Justin Lecher + -files/respect-cflags-and-fix-install.patch: + Drop old patch + + 24 Apr 2012; Justin Lecher -pdb-extract-1.700.ebuild, + -pdb-extract-3.004-r1.ebuild: + Drop old + + 24 Apr 2012; Justin Lecher Manifest: + Drop old + + 01 Aug 2011; Markus Meier pdb-extract-3.004-r2.ebuild: + amd64/x86 stable, bug #375901 + + 21 Jul 2011; Justin Lecher pdb-extract-1.700.ebuild, + pdb-extract-3.004-r1.ebuild, pdb-extract-3.004-r2.ebuild, metadata.xml: + Some cleanup + +*pdb-extract-3.004-r2 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher +pdb-extract-3.004-r2.ebuild, + files/pdb-extract-3.004-cflags-install.patch: + qa and adopted to bug 314053 + +*pdb-extract-3.004-r1 (25 Apr 2010) + + 25 Apr 2010; Justin Lecher -pdb-extract-3.004.ebuild, + +pdb-extract-3.004-r1.ebuild: + Add missing prefix.eclass + + 05 Apr 2010; Justin Lecher pdb-extract-3.004.ebuild, + files/pdb-extract-3.004-Makefile.patch, + files/pdb-extract-3.004-cflags-install.patch: + Keyworded for ~x86-linux ~amd64-linux, tested by me + + 10 Feb 2010; Torsten Veller pdb-extract-3.004.ebuild: + Add missing die: || "..." -> || die "..." + +*pdb-extract-3.004 (04 Dec 2009) + + 04 Dec 2009; Markus Dittrich + +pdb-extract-3.004.ebuild, +files/pdb-extract-3.004-Makefile.patch, + +files/pdb-extract-3.004-cflags-install.patch, + +files/pdb-extract-3.004-env.patch, + +files/pdb-extract-3.004-gcc-4.3.patch: + Version bump (fixes #246255). Thanks much to Justin Lecher (jlec) + for preparing the ebuild and patches. + + 02 Jul 2008; Donnie Berkholz ; + pdb-extract-1.700.ebuild: + die on failure to install files. + + 08 Apr 2008; Donnie Berkholz ; + pdb-extract-1.700.ebuild: + Keyword ~amd64, fix quoting. + + 15 Mar 2007; Danny van Dyk + pdb-extract-1.700.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 26 Sep 2006; Donnie Berkholz ; + pdb-extract-1.700.ebuild: + Stable on x86/ppc. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 26 Apr 2006; Donnie Berkholz ; + pdb-extract-1.700.ebuild: + Keyword ~ppc. + + 24 Apr 2006; Donnie Berkholz ; ChangeLog: + Keyword ~ppc. + +*pdb-extract-1.700 (20 Dec 2005) + + 20 Dec 2005; Donnie Berkholz ; + +files/respect-cflags-and-fix-install.patch, +metadata.xml, + +pdb-extract-1.700.ebuild: + Extract lots of information from Protein Data Bank files. + diff --git a/sci-chemistry/pdb-tools/ChangeLog b/sci-chemistry/pdb-tools/ChangeLog deleted file mode 100644 index 434816a3..00000000 --- a/sci-chemistry/pdb-tools/ChangeLog +++ /dev/null @@ -1,91 +0,0 @@ -# ChangeLog for sci-chemistry/pdb-tools -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.21 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny pdb-tools-0.2.1-r1.ebuild, - pdb-tools-0.2.1-r2.ebuild: - Drop old Python implementations - - 31 Mar 2014; Michał Górny pdb-tools-0.2.1-r1.ebuild: - Add support for the new PyPy slotting. - - 05 Sep 2013; Michał Górny pdb-tools-0.2.1-r1.ebuild, - pdb-tools-0.2.1-r2.ebuild: - Clean up PYTHON_COMPAT from old implementations. - -*pdb-tools-0.2.1-r2 (11 Aug 2013) - - 11 Aug 2013; Justin Lecher -pdb-tools-0.1.4-r3.ebuild, - -pdb-tools-0.1.4-r4.ebuild, -pdb-tools-0.2.1.ebuild, - +pdb-tools-0.2.1-r2.ebuild: - Drop old, #478590; mv generic helper modules to PN subdir, #480026 - - 07 Aug 2013; Michał Górny pdb-tools-0.1.4-r4.ebuild, - pdb-tools-0.2.1-r1.ebuild, pdb-tools-0.2.1.ebuild: - Drop removed Python implementations from PYTHON_COMPAT. - - 07 Aug 2013; Michał Górny pdb-tools-0.2.1-r1.ebuild: - Enable pypy2.0. - - 04 Jun 2013; Justin Lecher pdb-tools-0.1.4-r4.ebuild: - Fix for correct usage of new python eclasses - - 29 May 2013; Justin Lecher pdb-tools-0.2.1.ebuild, - pdb-tools-0.2.1-r1.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) - -*pdb-tools-0.2.1-r1 (10 May 2013) - - 10 May 2013; Justin Lecher +pdb-tools-0.2.1-r1.ebuild: - Fix double prefix installation - -*pdb-tools-0.2.1 (26 Apr 2013) - - 26 Apr 2013; Justin Lecher +pdb-tools-0.2.1.ebuild: - Version Bump - - 16 Apr 2013; Justin Lecher pdb-tools-0.1.4-r4.ebuild: - This package cannot be installed for multiple py abis - -*pdb-tools-0.1.4-r4 (16 Apr 2013) - - 16 Apr 2013; Justin Lecher +pdb-tools-0.1.4-r4.ebuild, - metadata.xml: - Move to new python eclass - - 19 Oct 2012; Justin Lecher pdb-tools-0.1.4-r3.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*pdb-tools-0.1.4-r3 (29 Aug 2011) - - 29 Aug 2011; Justin Lecher -pdb-tools-0.1.4-r2.ebuild, - +pdb-tools-0.1.4-r3.ebuild, metadata.xml: - Fix doubled entries in wrapper scripts - - 21 Jun 2011; Justin Lecher pdb-tools-0.1.4-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher pdb-tools-0.1.4-r2.ebuild: - Added fortran-2.eclass support - - 16 Dec 2010; Justin Lecher pdb-tools-0.1.4-r2.ebuild: - Removal of fortran.eclass, #348851 - -*pdb-tools-0.1.4-r2 (28 Oct 2010) - - 28 Oct 2010; Justin Lecher -pdb-tools-0.1.4-r1.ebuild, - +pdb-tools-0.1.4-r2.ebuild: - important fix and Support for Python ABIs - -*pdb-tools-0.1.4-r1 (28 Oct 2010) - - 28 Oct 2010; Justin Lecher -pdb-tools-0.1.4.ebuild, - +pdb-tools-0.1.4-r1.ebuild: - Important fix - -*pdb-tools-0.1.4 (28 Oct 2010) - - 28 Oct 2010; Justin Lecher +pdb-tools-0.1.4.ebuild, - +metadata.xml: - New addition diff --git a/sci-chemistry/pdb-tools/ChangeLog-2015 b/sci-chemistry/pdb-tools/ChangeLog-2015 new file mode 100644 index 00000000..434816a3 --- /dev/null +++ b/sci-chemistry/pdb-tools/ChangeLog-2015 @@ -0,0 +1,91 @@ +# ChangeLog for sci-chemistry/pdb-tools +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/ChangeLog,v 1.21 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny pdb-tools-0.2.1-r1.ebuild, + pdb-tools-0.2.1-r2.ebuild: + Drop old Python implementations + + 31 Mar 2014; Michał Górny pdb-tools-0.2.1-r1.ebuild: + Add support for the new PyPy slotting. + + 05 Sep 2013; Michał Górny pdb-tools-0.2.1-r1.ebuild, + pdb-tools-0.2.1-r2.ebuild: + Clean up PYTHON_COMPAT from old implementations. + +*pdb-tools-0.2.1-r2 (11 Aug 2013) + + 11 Aug 2013; Justin Lecher -pdb-tools-0.1.4-r3.ebuild, + -pdb-tools-0.1.4-r4.ebuild, -pdb-tools-0.2.1.ebuild, + +pdb-tools-0.2.1-r2.ebuild: + Drop old, #478590; mv generic helper modules to PN subdir, #480026 + + 07 Aug 2013; Michał Górny pdb-tools-0.1.4-r4.ebuild, + pdb-tools-0.2.1-r1.ebuild, pdb-tools-0.2.1.ebuild: + Drop removed Python implementations from PYTHON_COMPAT. + + 07 Aug 2013; Michał Górny pdb-tools-0.2.1-r1.ebuild: + Enable pypy2.0. + + 04 Jun 2013; Justin Lecher pdb-tools-0.1.4-r4.ebuild: + Fix for correct usage of new python eclasses + + 29 May 2013; Justin Lecher pdb-tools-0.2.1.ebuild, + pdb-tools-0.2.1-r1.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) + +*pdb-tools-0.2.1-r1 (10 May 2013) + + 10 May 2013; Justin Lecher +pdb-tools-0.2.1-r1.ebuild: + Fix double prefix installation + +*pdb-tools-0.2.1 (26 Apr 2013) + + 26 Apr 2013; Justin Lecher +pdb-tools-0.2.1.ebuild: + Version Bump + + 16 Apr 2013; Justin Lecher pdb-tools-0.1.4-r4.ebuild: + This package cannot be installed for multiple py abis + +*pdb-tools-0.1.4-r4 (16 Apr 2013) + + 16 Apr 2013; Justin Lecher +pdb-tools-0.1.4-r4.ebuild, + metadata.xml: + Move to new python eclass + + 19 Oct 2012; Justin Lecher pdb-tools-0.1.4-r3.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*pdb-tools-0.1.4-r3 (29 Aug 2011) + + 29 Aug 2011; Justin Lecher -pdb-tools-0.1.4-r2.ebuild, + +pdb-tools-0.1.4-r3.ebuild, metadata.xml: + Fix doubled entries in wrapper scripts + + 21 Jun 2011; Justin Lecher pdb-tools-0.1.4-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher pdb-tools-0.1.4-r2.ebuild: + Added fortran-2.eclass support + + 16 Dec 2010; Justin Lecher pdb-tools-0.1.4-r2.ebuild: + Removal of fortran.eclass, #348851 + +*pdb-tools-0.1.4-r2 (28 Oct 2010) + + 28 Oct 2010; Justin Lecher -pdb-tools-0.1.4-r1.ebuild, + +pdb-tools-0.1.4-r2.ebuild: + important fix and Support for Python ABIs + +*pdb-tools-0.1.4-r1 (28 Oct 2010) + + 28 Oct 2010; Justin Lecher -pdb-tools-0.1.4.ebuild, + +pdb-tools-0.1.4-r1.ebuild: + Important fix + +*pdb-tools-0.1.4 (28 Oct 2010) + + 28 Oct 2010; Justin Lecher +pdb-tools-0.1.4.ebuild, + +metadata.xml: + New addition diff --git a/sci-chemistry/pdb2pqr/ChangeLog b/sci-chemistry/pdb2pqr/ChangeLog deleted file mode 100644 index 2231d939..00000000 --- a/sci-chemistry/pdb2pqr/ChangeLog +++ /dev/null @@ -1,224 +0,0 @@ -# ChangeLog for sci-chemistry/pdb2pqr -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.51 2015/08/07 11:03:57 jlec Exp $ - - 07 Aug 2015; Justin Lecher -files/1.7.0-install.patch, - -files/pdb2pqr-1.4.0-automagic.patch, -files/pdb2pqr-1.4.0-install.patch, - -files/pdb2pqr-1.4.0-ldflags.patch, -files/pdb2pqr-1.8.0-automagic.patch, - -files/pdb2pqr-1.8.0-ldflags.patch, -pdb2pqr-1.5.0-r2.ebuild: - Drop old, fixes bug #478592 - - 07 Aug 2015; Agostino Sarubbo pdb2pqr-1.9.0-r1.ebuild: - Stable for x86, wrt bug #534696 - - 07 Aug 2015; Agostino Sarubbo pdb2pqr-1.9.0-r1.ebuild: - Stable for amd64, wrt bug #534696 - - 13 May 2015; Jack Morgan pdb2pqr-1.9.0-r1.ebuild: - ppc stable wrt bug #534696 - - 04 Jan 2015; Justin Lecher -pdb2pqr-1.7.0.ebuild, - -pdb2pqr-1.7.0-r2.ebuild, -pdb2pqr-1.8.0-r1.ebuild, -pdb2pqr-1.9.0.ebuild: - Drop old - - 04 Jan 2015; Justin Lecher pdb2pqr-1.9.0-r1.ebuild: - Drop obsolete dep - - 21 Nov 2014; Justin Lecher pdb2pqr-1.9.0-r1.ebuild: - Avoid double prefix - - 29 Oct 2014; Patrick Lauer pdb2pqr-1.9.0-r1.ebuild, - pdb2pqr-1.9.0.ebuild: - Whitespace, clean up inherit - -*pdb2pqr-1.9.0-r1 (28 Oct 2014) - - 28 Oct 2014; Justin Lecher +pdb2pqr-1.9.0-r1.ebuild, - +files/pdb2pka, +files/pdb2pqr-1.9.0-install-py.patch, +files/pdb2pqr: - Allow multi py ABI installations, clean installation - - 27 Oct 2014; Justin Lecher pdb2pqr-1.9.0.ebuild: - Add missing PYTHON_USEDEP - -*pdb2pqr-1.9.0 (27 Oct 2014) - - 27 Oct 2014; Justin Lecher +pdb2pqr-1.9.0.ebuild, - +files/pdb2pqr-1.9.0-flags.patch: - Version Bump - -*pdb2pqr-1.8.0-r1 (24 Oct 2014) - - 24 Oct 2014; Justin Lecher -pdb2pqr-1.8.0.ebuild, - +pdb2pqr-1.8.0-r1.ebuild: - Create correct wrappers - - 24 Oct 2014; Justin Lecher pdb2pqr-1.8.0.ebuild: - optimize py code - -*pdb2pqr-1.8.0 (24 Oct 2014) - - 24 Oct 2014; Justin Lecher +pdb2pqr-1.8.0.ebuild, - +files/pdb2pqr-1.8.0-automagic.patch, +files/pdb2pqr-1.8.0-ldflags.patch, - metadata.xml: - Version Bump - - 19 Oct 2012; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r2.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*pdb2pqr-1.7.0-r2 (11 May 2012) - - 11 May 2012; Justin Lecher -pdb2pqr-1.7.0-r1.ebuild, - +pdb2pqr-1.7.0-r2.ebuild: - Correct installation path of apbs - - 10 Mar 2012; Justin Lecher pdb2pqr-1.7.0-r1.ebuild, - metadata.xml: - Restrict pypy, move to EAPI=4 - - 21 Jun 2011; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: - Added fortran-2.eclass support - - 20 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: - Add missing src_compile - - 17 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: - Added missing autotools.eclass, #348963 - - 16 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, - pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: - Removal of fortran.eclass, #348851 - -*pdb2pqr-1.7.0-r1 (04 Nov 2010) - - 04 Nov 2010; Justin Lecher +pdb2pqr-1.7.0-r1.ebuild, - metadata.xml: - Added support for psb2pka - - 15 Oct 2010; Brent Baude pdb2pqr-1.5.0-r2.ebuild: - stable ppc, bug 321897 - -*pdb2pqr-1.7.0 (14 Oct 2010) - - 14 Oct 2010; Justin Lecher +files/1.7.0-install.patch, - -pdb2pqr-1.3.0.ebuild, -files/pdb2pqr-1.3.0-gcc4.3.patch, - -files/pdb2pqr-1.3.0-ldflags.patch, -pdb2pqr-1.4.0-r1.ebuild, - -files/pdb2pqr-1.4.0-gcc44.patch, -pdb2pqr-1.5.0.ebuild, - +pdb2pqr-1.7.0.ebuild: - Version Bump; 340867; removed old - - 07 Jul 2010; Pawel Hajdan jr - pdb2pqr-1.5.0-r2.ebuild: - x86 stable wrt bug #321897 - - 06 Jul 2010; Markos Chandras - pdb2pqr-1.5.0-r2.ebuild: - Stable on amd64 wrt bug #321897 - -*pdb2pqr-1.5.0-r2 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher -pdb2pqr-1.5.0-r1.ebuild, - +pdb2pqr-1.5.0-r2.ebuild: - Fixed typo ${PYTHON} -> $(PYTHON), thanks Arfrever for spotting this - - 15 Jun 2010; Arfrever Frehtes Taifersar Arahesis - pdb2pqr-1.3.0.ebuild, pdb2pqr-1.4.0-r1.ebuild, pdb2pqr-1.5.0.ebuild: - Delete deprecation warnings. - - 28 May 2010; Justin Lecher pdb2pqr-1.5.0-r1.ebuild: - Removed broken test - - 11 Mar 2010; Joseph Jezak pdb2pqr-1.5.0-r1.ebuild: - Marked ~ppc. - -*pdb2pqr-1.5.0-r1 (07 Mar 2010) - - 07 Mar 2010; Justin Lecher (jlec) +pdb2pqr-1.5.0-r1.ebuild: - Moved to EAPI=3 for prefix support, keyworded for *-linux, adopted to new python.eclass style - -*pdb2pqr-1.5.0 (03 Nov 2009) - - 03 Nov 2009; Markus Dittrich -pdb2pqr-1.1.2.ebuild, - -files/pdb2pqr-1.1.2-fpic-gentoo.patch, -files/pdb2pqr-gcc4-gentoo.patch, - -files/pdb2pqr-1.1.2-gcc4-gentoo.patch, -pdb2pqr-1.2.1.ebuild, - -files/pdb2pqr-propka-gentoo.patch, +pdb2pqr-1.5.0.ebuild: - Version bump and removed old ebuilds. - - 24 Sep 2009; Markus Dittrich - pdb2pqr-1.4.0-r1.ebuild, files/pdb2pqr-1.4.0-automagic.patch: - Fixed automagic patch to honor --without-opal (fixes bug #278199). - Thanks much to Kacper Kowalik for his patch. - -*pdb2pqr-1.4.0-r1 (24 May 2009) - - 24 May 2009; Jeff Gardner +pdb2pqr-1.4.0-r1.ebuild: - Latest from overlay, thanks to alexxy. - - 03 Mar 2009; Jeremy Olexa pdb2pqr-1.3.0.ebuild: - amd64 stable, bug 245874 - - 07 Feb 2009; Christian Faulhammer pdb2pqr-1.3.0.ebuild: - stable x86, bug 245874 - - 11 Oct 2008; Markus Dittrich pdb2pqr-1.1.2.ebuild: - Added numpy dependency to stable ebuild as well (see bug #241178). - - 11 Oct 2008; Markus Dittrich - +files/pdb2pqr-1.3.0-ldflags.patch, pdb2pqr-1.3.0.ebuild: - Added missing numpy dependency and fixed LDFLAGS issue (see bug #241178). - - 19 Jun 2008; Markus Dittrich - +files/pdb2pqr-1.3.0-gcc4.3.patch, pdb2pqr-1.3.0.ebuild: - Added patch to allow compilation with gcc-4.3 (bug #228121). - -*pdb2pqr-1.3.0 (06 Feb 2008) - - 06 Feb 2008; Markus Dittrich +pdb2pqr-1.3.0.ebuild: - Version bump (see bug #209007). - -*pdb2pqr-1.2.1 (03 Apr 2007) - - 03 Apr 2007; Jeff Gardner +pdb2pqr-1.2.1.ebuild: - Version bump. - - 06 Feb 2007; Simon Stelling pdb2pqr-1.1.2.ebuild: - stable on amd64; bug 162012 - - 17 Jan 2007; Christian Faulhammer pdb2pqr-1.1.2.ebuild: - stable x86, bug #162012 - - 07 Jan 2007; Danny van Dyk -pdb2pqr-1.0.2.ebuild: - QA: Removed unused versions. - - 17 Oct 2006; Jeff Gardner pdb2pqr-1.1.2.ebuild: - Keyworded ~amd64 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 01 Jul 2006; Markus Dittrich - +files/pdb2pqr-1.1.2-fpic-gentoo.patch, pdb2pqr-1.1.2.ebuild: - Replaced global appending of -fPIC to CFLAGS/FFLAGS by a local patch - to Makefile.in. - -*pdb2pqr-1.1.2 (01 Jul 2006) - - 01 Jul 2006; Markus Dittrich - +files/pdb2pqr-1.1.2-gcc4-gentoo.patch, +pdb2pqr-1.1.2.ebuild: - Version bump. Thanks much to je_fro for - his ebuild. This fixes bug #138534. - -*pdb2pqr-1.0.2 (21 Mar 2006) - - 21 Mar 2006; Markus Dittrich - +files/pdb2pqr-gcc4-gentoo.patch, +files/pdb2pqr-propka-gentoo.patch, +metadata.xml, +pdb2pqr-1.0.2.ebuild: - Initial import (fixes bug #124791). Many thanks to je_fro - for his ebuild. diff --git a/sci-chemistry/pdb2pqr/ChangeLog-2015 b/sci-chemistry/pdb2pqr/ChangeLog-2015 new file mode 100644 index 00000000..2231d939 --- /dev/null +++ b/sci-chemistry/pdb2pqr/ChangeLog-2015 @@ -0,0 +1,224 @@ +# ChangeLog for sci-chemistry/pdb2pqr +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.51 2015/08/07 11:03:57 jlec Exp $ + + 07 Aug 2015; Justin Lecher -files/1.7.0-install.patch, + -files/pdb2pqr-1.4.0-automagic.patch, -files/pdb2pqr-1.4.0-install.patch, + -files/pdb2pqr-1.4.0-ldflags.patch, -files/pdb2pqr-1.8.0-automagic.patch, + -files/pdb2pqr-1.8.0-ldflags.patch, -pdb2pqr-1.5.0-r2.ebuild: + Drop old, fixes bug #478592 + + 07 Aug 2015; Agostino Sarubbo pdb2pqr-1.9.0-r1.ebuild: + Stable for x86, wrt bug #534696 + + 07 Aug 2015; Agostino Sarubbo pdb2pqr-1.9.0-r1.ebuild: + Stable for amd64, wrt bug #534696 + + 13 May 2015; Jack Morgan pdb2pqr-1.9.0-r1.ebuild: + ppc stable wrt bug #534696 + + 04 Jan 2015; Justin Lecher -pdb2pqr-1.7.0.ebuild, + -pdb2pqr-1.7.0-r2.ebuild, -pdb2pqr-1.8.0-r1.ebuild, -pdb2pqr-1.9.0.ebuild: + Drop old + + 04 Jan 2015; Justin Lecher pdb2pqr-1.9.0-r1.ebuild: + Drop obsolete dep + + 21 Nov 2014; Justin Lecher pdb2pqr-1.9.0-r1.ebuild: + Avoid double prefix + + 29 Oct 2014; Patrick Lauer pdb2pqr-1.9.0-r1.ebuild, + pdb2pqr-1.9.0.ebuild: + Whitespace, clean up inherit + +*pdb2pqr-1.9.0-r1 (28 Oct 2014) + + 28 Oct 2014; Justin Lecher +pdb2pqr-1.9.0-r1.ebuild, + +files/pdb2pka, +files/pdb2pqr-1.9.0-install-py.patch, +files/pdb2pqr: + Allow multi py ABI installations, clean installation + + 27 Oct 2014; Justin Lecher pdb2pqr-1.9.0.ebuild: + Add missing PYTHON_USEDEP + +*pdb2pqr-1.9.0 (27 Oct 2014) + + 27 Oct 2014; Justin Lecher +pdb2pqr-1.9.0.ebuild, + +files/pdb2pqr-1.9.0-flags.patch: + Version Bump + +*pdb2pqr-1.8.0-r1 (24 Oct 2014) + + 24 Oct 2014; Justin Lecher -pdb2pqr-1.8.0.ebuild, + +pdb2pqr-1.8.0-r1.ebuild: + Create correct wrappers + + 24 Oct 2014; Justin Lecher pdb2pqr-1.8.0.ebuild: + optimize py code + +*pdb2pqr-1.8.0 (24 Oct 2014) + + 24 Oct 2014; Justin Lecher +pdb2pqr-1.8.0.ebuild, + +files/pdb2pqr-1.8.0-automagic.patch, +files/pdb2pqr-1.8.0-ldflags.patch, + metadata.xml: + Version Bump + + 19 Oct 2012; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r2.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*pdb2pqr-1.7.0-r2 (11 May 2012) + + 11 May 2012; Justin Lecher -pdb2pqr-1.7.0-r1.ebuild, + +pdb2pqr-1.7.0-r2.ebuild: + Correct installation path of apbs + + 10 Mar 2012; Justin Lecher pdb2pqr-1.7.0-r1.ebuild, + metadata.xml: + Restrict pypy, move to EAPI=4 + + 21 Jun 2011; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: + Added fortran-2.eclass support + + 20 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: + Add missing src_compile + + 17 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: + Added missing autotools.eclass, #348963 + + 16 Dec 2010; Justin Lecher pdb2pqr-1.5.0-r2.ebuild, + pdb2pqr-1.7.0.ebuild, pdb2pqr-1.7.0-r1.ebuild: + Removal of fortran.eclass, #348851 + +*pdb2pqr-1.7.0-r1 (04 Nov 2010) + + 04 Nov 2010; Justin Lecher +pdb2pqr-1.7.0-r1.ebuild, + metadata.xml: + Added support for psb2pka + + 15 Oct 2010; Brent Baude pdb2pqr-1.5.0-r2.ebuild: + stable ppc, bug 321897 + +*pdb2pqr-1.7.0 (14 Oct 2010) + + 14 Oct 2010; Justin Lecher +files/1.7.0-install.patch, + -pdb2pqr-1.3.0.ebuild, -files/pdb2pqr-1.3.0-gcc4.3.patch, + -files/pdb2pqr-1.3.0-ldflags.patch, -pdb2pqr-1.4.0-r1.ebuild, + -files/pdb2pqr-1.4.0-gcc44.patch, -pdb2pqr-1.5.0.ebuild, + +pdb2pqr-1.7.0.ebuild: + Version Bump; 340867; removed old + + 07 Jul 2010; Pawel Hajdan jr + pdb2pqr-1.5.0-r2.ebuild: + x86 stable wrt bug #321897 + + 06 Jul 2010; Markos Chandras + pdb2pqr-1.5.0-r2.ebuild: + Stable on amd64 wrt bug #321897 + +*pdb2pqr-1.5.0-r2 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher -pdb2pqr-1.5.0-r1.ebuild, + +pdb2pqr-1.5.0-r2.ebuild: + Fixed typo ${PYTHON} -> $(PYTHON), thanks Arfrever for spotting this + + 15 Jun 2010; Arfrever Frehtes Taifersar Arahesis + pdb2pqr-1.3.0.ebuild, pdb2pqr-1.4.0-r1.ebuild, pdb2pqr-1.5.0.ebuild: + Delete deprecation warnings. + + 28 May 2010; Justin Lecher pdb2pqr-1.5.0-r1.ebuild: + Removed broken test + + 11 Mar 2010; Joseph Jezak pdb2pqr-1.5.0-r1.ebuild: + Marked ~ppc. + +*pdb2pqr-1.5.0-r1 (07 Mar 2010) + + 07 Mar 2010; Justin Lecher (jlec) +pdb2pqr-1.5.0-r1.ebuild: + Moved to EAPI=3 for prefix support, keyworded for *-linux, adopted to new python.eclass style + +*pdb2pqr-1.5.0 (03 Nov 2009) + + 03 Nov 2009; Markus Dittrich -pdb2pqr-1.1.2.ebuild, + -files/pdb2pqr-1.1.2-fpic-gentoo.patch, -files/pdb2pqr-gcc4-gentoo.patch, + -files/pdb2pqr-1.1.2-gcc4-gentoo.patch, -pdb2pqr-1.2.1.ebuild, + -files/pdb2pqr-propka-gentoo.patch, +pdb2pqr-1.5.0.ebuild: + Version bump and removed old ebuilds. + + 24 Sep 2009; Markus Dittrich + pdb2pqr-1.4.0-r1.ebuild, files/pdb2pqr-1.4.0-automagic.patch: + Fixed automagic patch to honor --without-opal (fixes bug #278199). + Thanks much to Kacper Kowalik for his patch. + +*pdb2pqr-1.4.0-r1 (24 May 2009) + + 24 May 2009; Jeff Gardner +pdb2pqr-1.4.0-r1.ebuild: + Latest from overlay, thanks to alexxy. + + 03 Mar 2009; Jeremy Olexa pdb2pqr-1.3.0.ebuild: + amd64 stable, bug 245874 + + 07 Feb 2009; Christian Faulhammer pdb2pqr-1.3.0.ebuild: + stable x86, bug 245874 + + 11 Oct 2008; Markus Dittrich pdb2pqr-1.1.2.ebuild: + Added numpy dependency to stable ebuild as well (see bug #241178). + + 11 Oct 2008; Markus Dittrich + +files/pdb2pqr-1.3.0-ldflags.patch, pdb2pqr-1.3.0.ebuild: + Added missing numpy dependency and fixed LDFLAGS issue (see bug #241178). + + 19 Jun 2008; Markus Dittrich + +files/pdb2pqr-1.3.0-gcc4.3.patch, pdb2pqr-1.3.0.ebuild: + Added patch to allow compilation with gcc-4.3 (bug #228121). + +*pdb2pqr-1.3.0 (06 Feb 2008) + + 06 Feb 2008; Markus Dittrich +pdb2pqr-1.3.0.ebuild: + Version bump (see bug #209007). + +*pdb2pqr-1.2.1 (03 Apr 2007) + + 03 Apr 2007; Jeff Gardner +pdb2pqr-1.2.1.ebuild: + Version bump. + + 06 Feb 2007; Simon Stelling pdb2pqr-1.1.2.ebuild: + stable on amd64; bug 162012 + + 17 Jan 2007; Christian Faulhammer pdb2pqr-1.1.2.ebuild: + stable x86, bug #162012 + + 07 Jan 2007; Danny van Dyk -pdb2pqr-1.0.2.ebuild: + QA: Removed unused versions. + + 17 Oct 2006; Jeff Gardner pdb2pqr-1.1.2.ebuild: + Keyworded ~amd64 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 01 Jul 2006; Markus Dittrich + +files/pdb2pqr-1.1.2-fpic-gentoo.patch, pdb2pqr-1.1.2.ebuild: + Replaced global appending of -fPIC to CFLAGS/FFLAGS by a local patch + to Makefile.in. + +*pdb2pqr-1.1.2 (01 Jul 2006) + + 01 Jul 2006; Markus Dittrich + +files/pdb2pqr-1.1.2-gcc4-gentoo.patch, +pdb2pqr-1.1.2.ebuild: + Version bump. Thanks much to je_fro for + his ebuild. This fixes bug #138534. + +*pdb2pqr-1.0.2 (21 Mar 2006) + + 21 Mar 2006; Markus Dittrich + +files/pdb2pqr-gcc4-gentoo.patch, +files/pdb2pqr-propka-gentoo.patch, +metadata.xml, +pdb2pqr-1.0.2.ebuild: + Initial import (fixes bug #124791). Many thanks to je_fro + for his ebuild. diff --git a/sci-chemistry/pdbcat/ChangeLog b/sci-chemistry/pdbcat/ChangeLog deleted file mode 100644 index d0c169fa..00000000 --- a/sci-chemistry/pdbcat/ChangeLog +++ /dev/null @@ -1,16 +0,0 @@ -# ChangeLog for sci-chemistry/pdbcat -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbcat/ChangeLog,v 1.3 2013/07/18 06:06:03 jlec Exp $ - - 18 Jul 2013; Justin Lecher pdbcat-1.3.ebuild, metadata.xml: - Fix usage of cmake-utils.eclass, #477236 - - 11 Apr 2013; Ulrich Müller pdbcat-1.3.ebuild: - Fix LICENSE, "free for non-comercial use" according to README file. - -*pdbcat-1.3 (12 Oct 2012) - - 12 Oct 2012; Justin Lecher +pdbcat-1.3.ebuild, - +files/pdbcat-1.3-gcc.patch, +files/CMakeLists.txt, +metadata.xml: - New addition - diff --git a/sci-chemistry/pdbcat/ChangeLog-2015 b/sci-chemistry/pdbcat/ChangeLog-2015 new file mode 100644 index 00000000..d0c169fa --- /dev/null +++ b/sci-chemistry/pdbcat/ChangeLog-2015 @@ -0,0 +1,16 @@ +# ChangeLog for sci-chemistry/pdbcat +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbcat/ChangeLog,v 1.3 2013/07/18 06:06:03 jlec Exp $ + + 18 Jul 2013; Justin Lecher pdbcat-1.3.ebuild, metadata.xml: + Fix usage of cmake-utils.eclass, #477236 + + 11 Apr 2013; Ulrich Müller pdbcat-1.3.ebuild: + Fix LICENSE, "free for non-comercial use" according to README file. + +*pdbcat-1.3 (12 Oct 2012) + + 12 Oct 2012; Justin Lecher +pdbcat-1.3.ebuild, + +files/pdbcat-1.3-gcc.patch, +files/CMakeLists.txt, +metadata.xml: + New addition + diff --git a/sci-chemistry/pdbcns/ChangeLog b/sci-chemistry/pdbcns/ChangeLog deleted file mode 100644 index aaaff09f..00000000 --- a/sci-chemistry/pdbcns/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-chemistry/pdbcns -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbcns/ChangeLog,v 1.1 2012/03/01 16:12:16 jlec Exp $ - -*pdbcns-2.0.010504 (01 Mar 2012) - - 01 Mar 2012; Justin Lecher +pdbcns-2.0.010504.ebuild, - +metadata.xml: - New addition - diff --git a/sci-chemistry/pdbcns/ChangeLog-2015 b/sci-chemistry/pdbcns/ChangeLog-2015 new file mode 100644 index 00000000..aaaff09f --- /dev/null +++ b/sci-chemistry/pdbcns/ChangeLog-2015 @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/pdbcns +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbcns/ChangeLog,v 1.1 2012/03/01 16:12:16 jlec Exp $ + +*pdbcns-2.0.010504 (01 Mar 2012) + + 01 Mar 2012; Justin Lecher +pdbcns-2.0.010504.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/pdbmat/ChangeLog b/sci-chemistry/pdbmat/ChangeLog deleted file mode 100644 index 9d2edf64..00000000 --- a/sci-chemistry/pdbmat/ChangeLog +++ /dev/null @@ -1,23 +0,0 @@ -# ChangeLog for sci-chemistry/pdbmat -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbmat/ChangeLog,v 1.5 2013/05/21 17:19:44 jlec Exp $ - - 21 May 2013; Justin Lecher pdbmat-3.89.ebuild, - metadata.xml: - Correct license to CeCILL-2, #470788 - - 18 Oct 2012; Justin Lecher pdbmat-3.89.ebuild: - Drop virtual/fortran from DEP as it is provided by the fortran-2.eclass - - 07 Oct 2012; Justin Lecher pdbmat-3.89.ebuild: - Depend on virtual/fortran, #435948 - - 21 Mar 2012; Justin Lecher metadata.xml: - Fix metadata.xml - -*pdbmat-3.89 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +pdbmat-3.89.ebuild, - +files/CMakeLists.txt, +metadata.xml: - New addition, written by me - diff --git a/sci-chemistry/pdbmat/ChangeLog-2015 b/sci-chemistry/pdbmat/ChangeLog-2015 new file mode 100644 index 00000000..9d2edf64 --- /dev/null +++ b/sci-chemistry/pdbmat/ChangeLog-2015 @@ -0,0 +1,23 @@ +# ChangeLog for sci-chemistry/pdbmat +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdbmat/ChangeLog,v 1.5 2013/05/21 17:19:44 jlec Exp $ + + 21 May 2013; Justin Lecher pdbmat-3.89.ebuild, + metadata.xml: + Correct license to CeCILL-2, #470788 + + 18 Oct 2012; Justin Lecher pdbmat-3.89.ebuild: + Drop virtual/fortran from DEP as it is provided by the fortran-2.eclass + + 07 Oct 2012; Justin Lecher pdbmat-3.89.ebuild: + Depend on virtual/fortran, #435948 + + 21 Mar 2012; Justin Lecher metadata.xml: + Fix metadata.xml + +*pdbmat-3.89 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +pdbmat-3.89.ebuild, + +files/CMakeLists.txt, +metadata.xml: + New addition, written by me + diff --git a/sci-chemistry/phaser/ChangeLog b/sci-chemistry/phaser/ChangeLog deleted file mode 100644 index 0f3c6df6..00000000 --- a/sci-chemistry/phaser/ChangeLog +++ /dev/null @@ -1,22 +0,0 @@ -# ChangeLog for sci-chemistry/phaser -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/phaser/ChangeLog,v 1.5 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny phaser-2.1.4.ebuild: - Drop old Python implementations - - 06 Jan 2014; Justin Lecher phaser-2.1.4.ebuild, - metadata.xml: - Bump to EAPI=5; punt base.eclass; Bump to python-single-r1.eclass - - 05 Feb 2012; Mike Gilbert phaser-2.1.4.ebuild: - Inherit toolchain-funcs. - - 10 Apr 2011; Justin Lecher phaser-2.1.4.ebuild: - Remove all keywords as the package misses patches, 332485 - -*phaser-2.1.4 (03 Jul 2010) - - 03 Jul 2010; Justin Lecher +phaser-2.1.4.ebuild, - +files/phaser-2.1.4-chmod.patch, +metadata.xml: - Initial addition diff --git a/sci-chemistry/phaser/ChangeLog-2015 b/sci-chemistry/phaser/ChangeLog-2015 new file mode 100644 index 00000000..0f3c6df6 --- /dev/null +++ b/sci-chemistry/phaser/ChangeLog-2015 @@ -0,0 +1,22 @@ +# ChangeLog for sci-chemistry/phaser +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/phaser/ChangeLog,v 1.5 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny phaser-2.1.4.ebuild: + Drop old Python implementations + + 06 Jan 2014; Justin Lecher phaser-2.1.4.ebuild, + metadata.xml: + Bump to EAPI=5; punt base.eclass; Bump to python-single-r1.eclass + + 05 Feb 2012; Mike Gilbert phaser-2.1.4.ebuild: + Inherit toolchain-funcs. + + 10 Apr 2011; Justin Lecher phaser-2.1.4.ebuild: + Remove all keywords as the package misses patches, 332485 + +*phaser-2.1.4 (03 Jul 2010) + + 03 Jul 2010; Justin Lecher +phaser-2.1.4.ebuild, + +files/phaser-2.1.4-chmod.patch, +metadata.xml: + Initial addition diff --git a/sci-chemistry/platon/ChangeLog b/sci-chemistry/platon/ChangeLog deleted file mode 100644 index f608c1b7..00000000 --- a/sci-chemistry/platon/ChangeLog +++ /dev/null @@ -1,145 +0,0 @@ -# ChangeLog for sci-chemistry/platon -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/platon/ChangeLog,v 1.28 2015/04/07 14:37:49 jlec Exp $ - - 19 Oct 2012; Justin Lecher platon-20110126.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher platon-20110126.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher platon-20110126.ebuild: - Added fortran-2.eclass support - -*platon-20110126 (26 Jan 2011) - - 26 Jan 2011; Justin Lecher - +files/20110126-buffer-overflow.patch, -files/20101125-buffer-overflow.patch, - -platon-20101125.ebuild, +platon-20110126.ebuild: - Version Bump, #352440; fetch sources, RESTRICT=mirror - - 16 Dec 2010; Justin Lecher platon-20101125.ebuild: - Removal of fortran.eclass, #348851 - -*platon-20101125 (25 Nov 2010) - - 25 Nov 2010; Justin Lecher - +files/20101125-buffer-overflow.patch, -files/20101113-buffer-overflow.patch, - -platon-20101113.ebuild, +platon-20101125.ebuild: - Version Bump, #346789 - -*platon-20101113 (13 Nov 2010) - - 13 Nov 2010; Justin Lecher - -files/20100712-buffer-overflow.patch, -platon-20100712.ebuild, - +files/20101113-buffer-overflow.patch, +platon-20101113.ebuild: - Version Bump - -*platon-20100712 (13 Jul 2010) - - 13 Jul 2010; Justin Lecher - -files/20100629-buffer-overflow.patch, -platon-20100629.ebuild, - +files/20100712-buffer-overflow.patch, +platon-20100712.ebuild: - Version Bump - -*platon-20100629 (29 Jun 2010) - - 29 Jun 2010; Justin Lecher - -files/20100625-buffer-overflow.patch, -platon-20100625.ebuild, - +files/20100629-buffer-overflow.patch, +platon-20100629.ebuild: - Version Bump - -*platon-20100625 (27 Jun 2010) - - 27 Jun 2010; Justin Lecher - +files/20100625-buffer-overflow.patch, -platon-20100615.ebuild, - +platon-20100625.ebuild: - Version Bump, fix for bufferoverflow, #325065 - -*platon-20100615 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher -platon-20080702.ebuild, - -platon-20080725.ebuild, +platon-20100615.ebuild: - Version Bump, #255619; reduced optimization to prevend bufferoverflows; - #325065 - - 07 Jul 2009; Diego E. Pettenò - platon-20080725.ebuild: - Use elog for fetch error. - - 07 Oct 2008; Markus Dittrich platon-20080725.ebuild: - Removed linking against -lf2c with gfortran since platon misbehaves - otherwise (fixes bug #240238). Thanks much to Honza Macháček - for his suggested improvements. - -*platon-20080725 (30 Aug 2008) - - 30 Aug 2008; Markus Dittrich - -platon-20060717.ebuild, -platon-20070425.ebuild, +platon-20080725.ebuild: - Version bump and removed old ebuilds (see bug #183828). Also added - amd64 keyword. - - 07 Jul 2008; Donnie Berkholz ; - platon-20080702.ebuild: - Fix minor syntax errors. - -*platon-20080702 (07 Jul 2008) - - 07 Jul 2008; Donnie Berkholz ; - +platon-20080702.ebuild: - (#183828) Bump. - - 22 Jul 2007; Donnie Berkholz ; - platon-20060717.ebuild, platon-20070425.ebuild: - Drop virtual/x11 references. - -*platon-20070425 (26 Apr 2007) - - 26 Apr 2007; Jeff Gardner +platon-20070425.ebuild: - Version bump wrt bug #155351. - - 24 Apr 2007; Jeff Gardner - files/digest-platon-20060717, Manifest: - Re-Digest wrt bug #155351 - - 07 Jan 2007; Danny van Dyk -platon-20060621.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*platon-20060717 (07 Aug 2006) - - 07 Aug 2006; Donnie Berkholz ; - +platon-20060717.ebuild: - (#137734) Bump. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*platon-20060621 (23 Jun 2006) - - 23 Jun 2006; Donnie Berkholz ; - -platon-20051215.ebuild, -platon-20060530.ebuild, +platon-20060621.ebuild: - (#137734) Bump -- old versions no longer accessible. - -*platon-20060530 (03 Jun 2006) - - 03 Jun 2006; Donnie Berkholz ; - +platon-20060530.ebuild: - Bump to latest. Fix for gcc4 by linking against libf2c in the non-gcc3 case. - Keyword ~ppc. - -*platon-20051215 (16 Dec 2005) - - 16 Dec 2005; Donnie Berkholz ; +metadata.xml, - +platon-20051215.ebuild: - Another crystallography package. This one considers itself a versatile, - SHELX-97 compatible, multipurpose tool. - diff --git a/sci-chemistry/platon/ChangeLog-2015 b/sci-chemistry/platon/ChangeLog-2015 new file mode 100644 index 00000000..f608c1b7 --- /dev/null +++ b/sci-chemistry/platon/ChangeLog-2015 @@ -0,0 +1,145 @@ +# ChangeLog for sci-chemistry/platon +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/platon/ChangeLog,v 1.28 2015/04/07 14:37:49 jlec Exp $ + + 19 Oct 2012; Justin Lecher platon-20110126.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher platon-20110126.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher platon-20110126.ebuild: + Added fortran-2.eclass support + +*platon-20110126 (26 Jan 2011) + + 26 Jan 2011; Justin Lecher + +files/20110126-buffer-overflow.patch, -files/20101125-buffer-overflow.patch, + -platon-20101125.ebuild, +platon-20110126.ebuild: + Version Bump, #352440; fetch sources, RESTRICT=mirror + + 16 Dec 2010; Justin Lecher platon-20101125.ebuild: + Removal of fortran.eclass, #348851 + +*platon-20101125 (25 Nov 2010) + + 25 Nov 2010; Justin Lecher + +files/20101125-buffer-overflow.patch, -files/20101113-buffer-overflow.patch, + -platon-20101113.ebuild, +platon-20101125.ebuild: + Version Bump, #346789 + +*platon-20101113 (13 Nov 2010) + + 13 Nov 2010; Justin Lecher + -files/20100712-buffer-overflow.patch, -platon-20100712.ebuild, + +files/20101113-buffer-overflow.patch, +platon-20101113.ebuild: + Version Bump + +*platon-20100712 (13 Jul 2010) + + 13 Jul 2010; Justin Lecher + -files/20100629-buffer-overflow.patch, -platon-20100629.ebuild, + +files/20100712-buffer-overflow.patch, +platon-20100712.ebuild: + Version Bump + +*platon-20100629 (29 Jun 2010) + + 29 Jun 2010; Justin Lecher + -files/20100625-buffer-overflow.patch, -platon-20100625.ebuild, + +files/20100629-buffer-overflow.patch, +platon-20100629.ebuild: + Version Bump + +*platon-20100625 (27 Jun 2010) + + 27 Jun 2010; Justin Lecher + +files/20100625-buffer-overflow.patch, -platon-20100615.ebuild, + +platon-20100625.ebuild: + Version Bump, fix for bufferoverflow, #325065 + +*platon-20100615 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher -platon-20080702.ebuild, + -platon-20080725.ebuild, +platon-20100615.ebuild: + Version Bump, #255619; reduced optimization to prevend bufferoverflows; + #325065 + + 07 Jul 2009; Diego E. Pettenò + platon-20080725.ebuild: + Use elog for fetch error. + + 07 Oct 2008; Markus Dittrich platon-20080725.ebuild: + Removed linking against -lf2c with gfortran since platon misbehaves + otherwise (fixes bug #240238). Thanks much to Honza Macháček + for his suggested improvements. + +*platon-20080725 (30 Aug 2008) + + 30 Aug 2008; Markus Dittrich + -platon-20060717.ebuild, -platon-20070425.ebuild, +platon-20080725.ebuild: + Version bump and removed old ebuilds (see bug #183828). Also added + amd64 keyword. + + 07 Jul 2008; Donnie Berkholz ; + platon-20080702.ebuild: + Fix minor syntax errors. + +*platon-20080702 (07 Jul 2008) + + 07 Jul 2008; Donnie Berkholz ; + +platon-20080702.ebuild: + (#183828) Bump. + + 22 Jul 2007; Donnie Berkholz ; + platon-20060717.ebuild, platon-20070425.ebuild: + Drop virtual/x11 references. + +*platon-20070425 (26 Apr 2007) + + 26 Apr 2007; Jeff Gardner +platon-20070425.ebuild: + Version bump wrt bug #155351. + + 24 Apr 2007; Jeff Gardner + files/digest-platon-20060717, Manifest: + Re-Digest wrt bug #155351 + + 07 Jan 2007; Danny van Dyk -platon-20060621.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*platon-20060717 (07 Aug 2006) + + 07 Aug 2006; Donnie Berkholz ; + +platon-20060717.ebuild: + (#137734) Bump. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*platon-20060621 (23 Jun 2006) + + 23 Jun 2006; Donnie Berkholz ; + -platon-20051215.ebuild, -platon-20060530.ebuild, +platon-20060621.ebuild: + (#137734) Bump -- old versions no longer accessible. + +*platon-20060530 (03 Jun 2006) + + 03 Jun 2006; Donnie Berkholz ; + +platon-20060530.ebuild: + Bump to latest. Fix for gcc4 by linking against libf2c in the non-gcc3 case. + Keyword ~ppc. + +*platon-20051215 (16 Dec 2005) + + 16 Dec 2005; Donnie Berkholz ; +metadata.xml, + +platon-20051215.ebuild: + Another crystallography package. This one considers itself a versatile, + SHELX-97 compatible, multipurpose tool. + diff --git a/sci-chemistry/pointless/ChangeLog b/sci-chemistry/pointless/ChangeLog deleted file mode 100644 index 7d85a5c5..00000000 --- a/sci-chemistry/pointless/ChangeLog +++ /dev/null @@ -1,177 +0,0 @@ -# ChangeLog for sci-chemistry/pointless -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pointless/ChangeLog,v 1.39 2015/04/08 18:22:13 mgorny Exp $ - - 08 Apr 2015; Michał Górny pointless-1.6.14-r1.ebuild: - Drop old Python implementations - - 16 Aug 2013; Justin Lecher pointless-1.6.14-r1.ebuild: - Add back python eclass - -*pointless-1.6.14-r1 (15 Aug 2013) - - 15 Aug 2013; Justin Lecher +pointless-1.6.14-r1.ebuild, - metadata.xml: - Bump EAPI, drop pointless python.eclass usage - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 19 Oct 2012; Justin Lecher +pointless-1.6.14.ebuild, - -pointless-1.6.15.ebuild: - Drop broken version - -*pointless-1.6.15 (19 Oct 2012) - - 19 Oct 2012; Justin Lecher pointless-1.6.2.ebuild, - -pointless-1.6.4.ebuild, -pointless-1.6.5.ebuild, -pointless-1.6.11.ebuild, - -pointless-1.6.14.ebuild, +pointless-1.6.15.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 14 Apr 2012; Andreas Schuerch pointless-1.6.2.ebuild: - x86 stable, see bug 375917, thanks all. - -*pointless-1.6.14 (28 Feb 2012) - - 28 Feb 2012; Justin Lecher +pointless-1.6.14.ebuild: - Version Bump - -*pointless-1.6.11 (27 Dec 2011) - - 27 Dec 2011; Justin Lecher +pointless-1.6.11.ebuild: - Version Bump - - 16 Oct 2011; Samuli Suominen pointless-1.6.2.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen pointless-1.6.2.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon pointless-1.6.2.ebuild: - Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug - #351753. - -*pointless-1.6.5 (04 Oct 2011) - - 04 Oct 2011; Justin Lecher +pointless-1.6.5.ebuild: - Version Bump - -*pointless-1.6.4 (31 Aug 2011) - - 31 Aug 2011; Justin Lecher +pointless-1.6.4.ebuild: - Version Bump - - 28 Aug 2011; Justin Lecher pointless-1.6.2.ebuild: - Narrowed dep on ccp4-libs to 6.1.3-r10, #376251 - - 15 Aug 2011; Justin Lecher pointless-1.6.2.ebuild: - Removed unneeded USE=test - - 15 Aug 2011; Kacper Kowalik pointless-1.6.2.ebuild: - Marked ~ppc for sci-chemistry/xia2 - -*pointless-1.6.2 (14 Aug 2011) - - 14 Aug 2011; Justin Lecher -pointless-1.5.12.ebuild, - -pointless-1.5.14.ebuild, -pointless-1.5.21.ebuild, +pointless-1.6.2.ebuild, - metadata.xml: - Version Bump and removed broken versions - https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1107&L=CCP4BB&F=&S=&P=29208 - 5 - - 21 Jun 2011; Justin Lecher pointless-1.5.14.ebuild, - pointless-1.5.21.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher pointless-1.5.12.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher pointless-1.5.12.ebuild, - pointless-1.5.14.ebuild, pointless-1.5.21.ebuild: - Added fortran-2.eclass support - -*pointless-1.5.21 (12 May 2011) - - 12 May 2011; Justin Lecher -pointless-1.5.19.ebuild, - +pointless-1.5.21.ebuild: - 1.5.19 is seriously broken, bump to 21: "specifically, files written in a - point group of lower symmetry than the apparent lattice group were not - sorted, but were flagged as sorted in the file. This leads to apparent - completeness in Scala > 100% and failure to merge properly" - -*pointless-1.5.19 (10 Apr 2011) - - 10 Apr 2011; Justin Lecher +pointless-1.5.19.ebuild: - Version Bump - - 16 Jan 2011; Kacper Kowalik - pointless-1.5.12.ebuild: - marked ~ppc wrt #303931 - - 15 Jan 2011; Justin Lecher -pointless-1.4.9.ebuild, - -pointless-1.5.7.ebuild, -pointless-1.5.9.ebuild, -pointless-1.5.10.ebuild: - Keyworded for ~-linux, tested by me, removed old - -*pointless-1.5.14 (15 Jan 2011) - - 15 Jan 2011; Justin Lecher +pointless-1.5.14.ebuild: - Version Bump, fixed missing deps - -*pointless-1.5.12 (15 Dec 2010) - - 15 Dec 2010; Justin Lecher +pointless-1.5.12.ebuild: - Version Bump, fix for new cctbx stuff - -*pointless-1.5.10 (23 Oct 2010) - - 23 Oct 2010; Justin Lecher +pointless-1.5.10.ebuild: - Version Bump - - 25 Sep 2010; Justin Lecher pointless-1.5.9.ebuild: - reverted Changes for include paths - - 20 Sep 2010; Justin Lecher pointless-1.4.9.ebuild, - pointless-1.5.7.ebuild, pointless-1.5.9.ebuild: - Fix cctbx version - -*pointless-1.5.9 (12 Sep 2010) - - 12 Sep 2010; Justin Lecher -pointless-1.5.1.ebuild, - -pointless-1.5.2.ebuild, -pointless-1.5.3.ebuild, +pointless-1.5.9.ebuild: - Version Bump, cleaned old - -*pointless-1.5.7 (08 Jul 2010) - - 08 Jul 2010; Justin Lecher +pointless-1.5.7.ebuild: - Version Bump - -*pointless-1.5.3 (16 Jun 2010) - - 16 Jun 2010; Justin Lecher pointless-1.4.9.ebuild, - pointless-1.5.1.ebuild, pointless-1.5.2.ebuild, +pointless-1.5.3.ebuild: - Version Bump and keyworded for *-linux - -*pointless-1.5.2 (29 May 2010) - - 29 May 2010; Justin Lecher -pointless-1.4.8.ebuild, - +pointless-1.5.2.ebuild: - Version Bump - -*pointless-1.5.1 (16 May 2010) - - 16 May 2010; Justin Lecher +files/1.5.1-gcc4.4.patch, - +pointless-1.5.1.ebuild: - Version Bump - -*pointless-1.4.9 (26 Feb 2010) - - 26 Feb 2010; Justin Lecher - +pointless-1.4.9.ebuild: - Version Bump - -*pointless-1.4.8 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher - +pointless-1.4.8.ebuild, +metadata.xml: - Splitted pointless from ccp4 diff --git a/sci-chemistry/pointless/ChangeLog-2015 b/sci-chemistry/pointless/ChangeLog-2015 new file mode 100644 index 00000000..7d85a5c5 --- /dev/null +++ b/sci-chemistry/pointless/ChangeLog-2015 @@ -0,0 +1,177 @@ +# ChangeLog for sci-chemistry/pointless +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pointless/ChangeLog,v 1.39 2015/04/08 18:22:13 mgorny Exp $ + + 08 Apr 2015; Michał Górny pointless-1.6.14-r1.ebuild: + Drop old Python implementations + + 16 Aug 2013; Justin Lecher pointless-1.6.14-r1.ebuild: + Add back python eclass + +*pointless-1.6.14-r1 (15 Aug 2013) + + 15 Aug 2013; Justin Lecher +pointless-1.6.14-r1.ebuild, + metadata.xml: + Bump EAPI, drop pointless python.eclass usage + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 19 Oct 2012; Justin Lecher +pointless-1.6.14.ebuild, + -pointless-1.6.15.ebuild: + Drop broken version + +*pointless-1.6.15 (19 Oct 2012) + + 19 Oct 2012; Justin Lecher pointless-1.6.2.ebuild, + -pointless-1.6.4.ebuild, -pointless-1.6.5.ebuild, -pointless-1.6.11.ebuild, + -pointless-1.6.14.ebuild, +pointless-1.6.15.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 14 Apr 2012; Andreas Schuerch pointless-1.6.2.ebuild: + x86 stable, see bug 375917, thanks all. + +*pointless-1.6.14 (28 Feb 2012) + + 28 Feb 2012; Justin Lecher +pointless-1.6.14.ebuild: + Version Bump + +*pointless-1.6.11 (27 Dec 2011) + + 27 Dec 2011; Justin Lecher +pointless-1.6.11.ebuild: + Version Bump + + 16 Oct 2011; Samuli Suominen pointless-1.6.2.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen pointless-1.6.2.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon pointless-1.6.2.ebuild: + Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug + #351753. + +*pointless-1.6.5 (04 Oct 2011) + + 04 Oct 2011; Justin Lecher +pointless-1.6.5.ebuild: + Version Bump + +*pointless-1.6.4 (31 Aug 2011) + + 31 Aug 2011; Justin Lecher +pointless-1.6.4.ebuild: + Version Bump + + 28 Aug 2011; Justin Lecher pointless-1.6.2.ebuild: + Narrowed dep on ccp4-libs to 6.1.3-r10, #376251 + + 15 Aug 2011; Justin Lecher pointless-1.6.2.ebuild: + Removed unneeded USE=test + + 15 Aug 2011; Kacper Kowalik pointless-1.6.2.ebuild: + Marked ~ppc for sci-chemistry/xia2 + +*pointless-1.6.2 (14 Aug 2011) + + 14 Aug 2011; Justin Lecher -pointless-1.5.12.ebuild, + -pointless-1.5.14.ebuild, -pointless-1.5.21.ebuild, +pointless-1.6.2.ebuild, + metadata.xml: + Version Bump and removed broken versions + https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1107&L=CCP4BB&F=&S=&P=29208 + 5 + + 21 Jun 2011; Justin Lecher pointless-1.5.14.ebuild, + pointless-1.5.21.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher pointless-1.5.12.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher pointless-1.5.12.ebuild, + pointless-1.5.14.ebuild, pointless-1.5.21.ebuild: + Added fortran-2.eclass support + +*pointless-1.5.21 (12 May 2011) + + 12 May 2011; Justin Lecher -pointless-1.5.19.ebuild, + +pointless-1.5.21.ebuild: + 1.5.19 is seriously broken, bump to 21: "specifically, files written in a + point group of lower symmetry than the apparent lattice group were not + sorted, but were flagged as sorted in the file. This leads to apparent + completeness in Scala > 100% and failure to merge properly" + +*pointless-1.5.19 (10 Apr 2011) + + 10 Apr 2011; Justin Lecher +pointless-1.5.19.ebuild: + Version Bump + + 16 Jan 2011; Kacper Kowalik + pointless-1.5.12.ebuild: + marked ~ppc wrt #303931 + + 15 Jan 2011; Justin Lecher -pointless-1.4.9.ebuild, + -pointless-1.5.7.ebuild, -pointless-1.5.9.ebuild, -pointless-1.5.10.ebuild: + Keyworded for ~-linux, tested by me, removed old + +*pointless-1.5.14 (15 Jan 2011) + + 15 Jan 2011; Justin Lecher +pointless-1.5.14.ebuild: + Version Bump, fixed missing deps + +*pointless-1.5.12 (15 Dec 2010) + + 15 Dec 2010; Justin Lecher +pointless-1.5.12.ebuild: + Version Bump, fix for new cctbx stuff + +*pointless-1.5.10 (23 Oct 2010) + + 23 Oct 2010; Justin Lecher +pointless-1.5.10.ebuild: + Version Bump + + 25 Sep 2010; Justin Lecher pointless-1.5.9.ebuild: + reverted Changes for include paths + + 20 Sep 2010; Justin Lecher pointless-1.4.9.ebuild, + pointless-1.5.7.ebuild, pointless-1.5.9.ebuild: + Fix cctbx version + +*pointless-1.5.9 (12 Sep 2010) + + 12 Sep 2010; Justin Lecher -pointless-1.5.1.ebuild, + -pointless-1.5.2.ebuild, -pointless-1.5.3.ebuild, +pointless-1.5.9.ebuild: + Version Bump, cleaned old + +*pointless-1.5.7 (08 Jul 2010) + + 08 Jul 2010; Justin Lecher +pointless-1.5.7.ebuild: + Version Bump + +*pointless-1.5.3 (16 Jun 2010) + + 16 Jun 2010; Justin Lecher pointless-1.4.9.ebuild, + pointless-1.5.1.ebuild, pointless-1.5.2.ebuild, +pointless-1.5.3.ebuild: + Version Bump and keyworded for *-linux + +*pointless-1.5.2 (29 May 2010) + + 29 May 2010; Justin Lecher -pointless-1.4.8.ebuild, + +pointless-1.5.2.ebuild: + Version Bump + +*pointless-1.5.1 (16 May 2010) + + 16 May 2010; Justin Lecher +files/1.5.1-gcc4.4.patch, + +pointless-1.5.1.ebuild: + Version Bump + +*pointless-1.4.9 (26 Feb 2010) + + 26 Feb 2010; Justin Lecher + +pointless-1.4.9.ebuild: + Version Bump + +*pointless-1.4.8 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher + +pointless-1.4.8.ebuild, +metadata.xml: + Splitted pointless from ccp4 diff --git a/sci-chemistry/povscript+/ChangeLog b/sci-chemistry/povscript+/ChangeLog deleted file mode 100644 index 9b49779d..00000000 --- a/sci-chemistry/povscript+/ChangeLog +++ /dev/null @@ -1,34 +0,0 @@ -# ChangeLog for sci-chemistry/povscript+ -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/povscript+/ChangeLog,v 1.7 2015/04/07 14:38:09 jlec Exp $ - -*povscript+-2.1.2.2.20 (12 Jul 2013) - - 12 Jul 2013; Justin Lecher -povscript+-2.1.2.2.18.ebuild, - povscript+-2.1.2.2.19.ebuild, +povscript+-2.1.2.2.20.ebuild, metadata.xml: - Version Bump; drop old; fix upstreams new webpresents, #476582 - - 14 Sep 2011; Samuli Suominen - povscript+-2.1.2.2.19.ebuild, +files/povscript+-2.1.2.2.19-libpng15.patch: - Fix building with libpng15 wrt #378737 by Diego Elio Pettenò. Fix missing - dependencies; freeglut, giflib, libpng, zlib, glu, jpeg, opengl and libX11. - - 02 Mar 2011; Justin Lecher povscript+-2.1.2.2.18.ebuild, - povscript+-2.1.2.2.19.ebuild: - Correct Slots for gtk 3 introduction to tree - -*povscript+-2.1.2.2.19 (08 Jul 2008) - - 08 Jul 2008; Donnie Berkholz ; - +povscript+-2.1.2.2.19.ebuild: - (#231113) Bump. Keyword ~amd64. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*povscript+-2.1.2.2.18 (16 Sep 2006) - - 16 Sep 2006; Donnie Berkholz ; +metadata.xml, - +povscript+-2.1.2.2.18.ebuild: - Modified molscript that uses POV-Ray, does thermal ellipsoids, and more. - diff --git a/sci-chemistry/povscript+/ChangeLog-2015 b/sci-chemistry/povscript+/ChangeLog-2015 new file mode 100644 index 00000000..9b49779d --- /dev/null +++ b/sci-chemistry/povscript+/ChangeLog-2015 @@ -0,0 +1,34 @@ +# ChangeLog for sci-chemistry/povscript+ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/povscript+/ChangeLog,v 1.7 2015/04/07 14:38:09 jlec Exp $ + +*povscript+-2.1.2.2.20 (12 Jul 2013) + + 12 Jul 2013; Justin Lecher -povscript+-2.1.2.2.18.ebuild, + povscript+-2.1.2.2.19.ebuild, +povscript+-2.1.2.2.20.ebuild, metadata.xml: + Version Bump; drop old; fix upstreams new webpresents, #476582 + + 14 Sep 2011; Samuli Suominen + povscript+-2.1.2.2.19.ebuild, +files/povscript+-2.1.2.2.19-libpng15.patch: + Fix building with libpng15 wrt #378737 by Diego Elio Pettenò. Fix missing + dependencies; freeglut, giflib, libpng, zlib, glu, jpeg, opengl and libX11. + + 02 Mar 2011; Justin Lecher povscript+-2.1.2.2.18.ebuild, + povscript+-2.1.2.2.19.ebuild: + Correct Slots for gtk 3 introduction to tree + +*povscript+-2.1.2.2.19 (08 Jul 2008) + + 08 Jul 2008; Donnie Berkholz ; + +povscript+-2.1.2.2.19.ebuild: + (#231113) Bump. Keyword ~amd64. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*povscript+-2.1.2.2.18 (16 Sep 2006) + + 16 Sep 2006; Donnie Berkholz ; +metadata.xml, + +povscript+-2.1.2.2.18.ebuild: + Modified molscript that uses POV-Ray, does thermal ellipsoids, and more. + diff --git a/sci-chemistry/prekin/ChangeLog b/sci-chemistry/prekin/ChangeLog deleted file mode 100644 index 2f81a30b..00000000 --- a/sci-chemistry/prekin/ChangeLog +++ /dev/null @@ -1,31 +0,0 @@ -# ChangeLog for sci-chemistry/prekin -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.5 2012/10/24 19:33:03 ulm Exp $ - - 24 Oct 2012; Ulrich Müller prekin-6.51.081122-r1.ebuild: - Update dependency after package move from x11-libs/openmotif to - x11-libs/motif. - - 12 Jun 2011; Kacper Kowalik - -prekin-6.51.081122.ebuild, prekin-6.51.081122-r1.ebuild: - Add missing dependencies wrt #371235 by Piotr Szymaniak , add - missing die, remove unnecessary messages and quotes. Drop old - - 10 Oct 2010; Ulrich Mueller prekin-6.51.081122.ebuild, - prekin-6.51.081122-r1.ebuild: - Fix openmotif dependency. - -*prekin-6.51.081122-r1 (03 Oct 2010) - - 03 Oct 2010; Justin Lecher - +files/6.51.081122-overflow.patch, prekin-6.51.081122.ebuild, - +prekin-6.51.081122-r1.ebuild: - Fixes for overflows, 337779 - -*prekin-6.51.081122 (18 Jul 2010) - - 18 Jul 2010; Justin Lecher - +files/6.51.081122-Makefile.patch, +prekin-6.51.081122.ebuild, - +metadata.xml: - New Addition - diff --git a/sci-chemistry/prekin/ChangeLog-2015 b/sci-chemistry/prekin/ChangeLog-2015 new file mode 100644 index 00000000..2f81a30b --- /dev/null +++ b/sci-chemistry/prekin/ChangeLog-2015 @@ -0,0 +1,31 @@ +# ChangeLog for sci-chemistry/prekin +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.5 2012/10/24 19:33:03 ulm Exp $ + + 24 Oct 2012; Ulrich Müller prekin-6.51.081122-r1.ebuild: + Update dependency after package move from x11-libs/openmotif to + x11-libs/motif. + + 12 Jun 2011; Kacper Kowalik + -prekin-6.51.081122.ebuild, prekin-6.51.081122-r1.ebuild: + Add missing dependencies wrt #371235 by Piotr Szymaniak , add + missing die, remove unnecessary messages and quotes. Drop old + + 10 Oct 2010; Ulrich Mueller prekin-6.51.081122.ebuild, + prekin-6.51.081122-r1.ebuild: + Fix openmotif dependency. + +*prekin-6.51.081122-r1 (03 Oct 2010) + + 03 Oct 2010; Justin Lecher + +files/6.51.081122-overflow.patch, prekin-6.51.081122.ebuild, + +prekin-6.51.081122-r1.ebuild: + Fixes for overflows, 337779 + +*prekin-6.51.081122 (18 Jul 2010) + + 18 Jul 2010; Justin Lecher + +files/6.51.081122-Makefile.patch, +prekin-6.51.081122.ebuild, + +metadata.xml: + New Addition + diff --git a/sci-chemistry/probe/ChangeLog b/sci-chemistry/probe/ChangeLog deleted file mode 100644 index adc130af..00000000 --- a/sci-chemistry/probe/ChangeLog +++ /dev/null @@ -1,85 +0,0 @@ -# ChangeLog for sci-chemistry/probe -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.21 2015/08/06 11:54:52 ago Exp $ - - 06 Aug 2015; Agostino Sarubbo probe-2.13.110909.ebuild: - Stable for amd64, wrt bug #556816 - - 10 Jul 2012; Justin Lecher -probe-2.11.050121.ebuild, - -probe-2.12.071128.ebuild, -probe-2.12.071128-r1.ebuild: - Cleaned old - - 10 Jul 2012; Brent Baude probe-2.12.110413.ebuild: - Marking probe-2.12.110413 ppc for bug 419869 - - 13 Jun 2012; Jeff Horelick probe-2.12.110413.ebuild: - marked x86 per bug 419869 - - 11 Jun 2012; Agostino Sarubbo probe-2.12.110413.ebuild: - Stable for amd64, wrt bug #419869 - -*probe-2.13.110909 (06 Jun 2012) - - 06 Jun 2012; Justin Lecher +probe-2.13.110909.ebuild, - +files/probe-2.13.110909-as-needed.patch: - Version Bump - - 06 Jun 2012; Justin Lecher probe-2.12.110413.ebuild: - minor cleaning - - 21 Nov 2011; Justin Lecher probe-2.12.110413.ebuild: - keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123 - - 26 Jun 2011; Justin Lecher probe-2.11.050121.ebuild, - probe-2.12.071128.ebuild, probe-2.12.071128-r1.ebuild, - probe-2.12.110413.ebuild, metadata.xml: - Straight out QA issues - -*probe-2.12.110413 (06 May 2011) - - 06 May 2011; Justin Lecher - +files/2.12.110413-as-needed.patch, +probe-2.12.110413.ebuild: - Version Bump, notified by euscan - -*probe-2.12.071128-r1 (06 Jul 2010) - - 06 Jul 2010; Justin Lecher probe-2.12.071128.ebuild, - +probe-2.12.071128-r1.ebuild, +files/as-needed.patch: - As-needed fix - - 28 Jun 2010; Justin Lecher probe-2.12.071128.ebuild: - Keyworded for linux prefix, some QA (die missing) - - 29 May 2009; Donnie Berkholz ; - probe-2.12.071128.ebuild: - Stable on amd64. - - 08 Jul 2008; Donnie Berkholz ; - probe-2.12.071128.ebuild: - Fix minor syntax errors. - -*probe-2.12.071128 (08 Jul 2008) - - 08 Jul 2008; Donnie Berkholz ; - +probe-2.12.071128.ebuild: - (#231108) Bump. Keyword ~amd64. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; - probe-2.11.050121.ebuild: - x86/ppc stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*probe-2.11.050121 (04 Jun 2006) - - 04 Jun 2006; Donnie Berkholz ; +metadata.xml, - +probe-2.11.050121.ebuild: - New program that evaluates atomic packing within or between molecules. diff --git a/sci-chemistry/probe/ChangeLog-2015 b/sci-chemistry/probe/ChangeLog-2015 new file mode 100644 index 00000000..adc130af --- /dev/null +++ b/sci-chemistry/probe/ChangeLog-2015 @@ -0,0 +1,85 @@ +# ChangeLog for sci-chemistry/probe +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.21 2015/08/06 11:54:52 ago Exp $ + + 06 Aug 2015; Agostino Sarubbo probe-2.13.110909.ebuild: + Stable for amd64, wrt bug #556816 + + 10 Jul 2012; Justin Lecher -probe-2.11.050121.ebuild, + -probe-2.12.071128.ebuild, -probe-2.12.071128-r1.ebuild: + Cleaned old + + 10 Jul 2012; Brent Baude probe-2.12.110413.ebuild: + Marking probe-2.12.110413 ppc for bug 419869 + + 13 Jun 2012; Jeff Horelick probe-2.12.110413.ebuild: + marked x86 per bug 419869 + + 11 Jun 2012; Agostino Sarubbo probe-2.12.110413.ebuild: + Stable for amd64, wrt bug #419869 + +*probe-2.13.110909 (06 Jun 2012) + + 06 Jun 2012; Justin Lecher +probe-2.13.110909.ebuild, + +files/probe-2.13.110909-as-needed.patch: + Version Bump + + 06 Jun 2012; Justin Lecher probe-2.12.110413.ebuild: + minor cleaning + + 21 Nov 2011; Justin Lecher probe-2.12.110413.ebuild: + keyworded for ~x86-macos ~x64-macos, tested by Johan Hattne #390123 + + 26 Jun 2011; Justin Lecher probe-2.11.050121.ebuild, + probe-2.12.071128.ebuild, probe-2.12.071128-r1.ebuild, + probe-2.12.110413.ebuild, metadata.xml: + Straight out QA issues + +*probe-2.12.110413 (06 May 2011) + + 06 May 2011; Justin Lecher + +files/2.12.110413-as-needed.patch, +probe-2.12.110413.ebuild: + Version Bump, notified by euscan + +*probe-2.12.071128-r1 (06 Jul 2010) + + 06 Jul 2010; Justin Lecher probe-2.12.071128.ebuild, + +probe-2.12.071128-r1.ebuild, +files/as-needed.patch: + As-needed fix + + 28 Jun 2010; Justin Lecher probe-2.12.071128.ebuild: + Keyworded for linux prefix, some QA (die missing) + + 29 May 2009; Donnie Berkholz ; + probe-2.12.071128.ebuild: + Stable on amd64. + + 08 Jul 2008; Donnie Berkholz ; + probe-2.12.071128.ebuild: + Fix minor syntax errors. + +*probe-2.12.071128 (08 Jul 2008) + + 08 Jul 2008; Donnie Berkholz ; + +probe-2.12.071128.ebuild: + (#231108) Bump. Keyword ~amd64. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; + probe-2.11.050121.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*probe-2.11.050121 (04 Jun 2006) + + 04 Jun 2006; Donnie Berkholz ; +metadata.xml, + +probe-2.11.050121.ebuild: + New program that evaluates atomic packing within or between molecules. diff --git a/sci-chemistry/procheck/ChangeLog b/sci-chemistry/procheck/ChangeLog deleted file mode 100644 index 63a58f7b..00000000 --- a/sci-chemistry/procheck/ChangeLog +++ /dev/null @@ -1,48 +0,0 @@ -# ChangeLog for sci-chemistry/procheck -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/procheck/ChangeLog,v 1.11 2015/01/05 20:20:04 jlec Exp $ - -*procheck-3.5.4-r2 (05 Jan 2015) - - 05 Jan 2015; Justin Lecher +procheck-3.5.4-r2.ebuild, - +files/procheck-3.5.4-close.patch, metadata.xml: - Add patch to fix problems with newer gfortran, thanks xarthisius for the - patch - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 19 Oct 2012; Justin Lecher procheck-3.5.4-r1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 09 Jul 2012; Johannes Huber procheck-3.5.4-r1.ebuild: - Stable for x86, wrt bug #419877 - - 12 Jun 2012; Agostino Sarubbo procheck-3.5.4-r1.ebuild: - Stable for amd64, wrt bug #419877 - - 21 Jun 2011; Justin Lecher procheck-3.5.4-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher procheck-3.5.4-r1.ebuild: - Added fortran-2.eclass support - - 16 Dec 2010; Justin Lecher procheck-3.5.4-r1.ebuild: - Removal of fortran.eclass, #348851 - -*procheck-3.5.4-r1 (19 Jul 2010) - - 19 Jul 2010; Justin Lecher -procheck-3.5.4.ebuild, - +procheck-3.5.4-r1.ebuild: - install 30procheck into env.d not profile.d - - 19 Jul 2010; Justin Lecher procheck-3.5.4.ebuild: - Cleaned SRC_URI - -*procheck-3.5.4 (18 Jul 2010) - - 18 Jul 2010; Justin Lecher +files/3.5.4-ldflags.patch, - +procheck-3.5.4.ebuild, +metadata.xml: - New Addition diff --git a/sci-chemistry/procheck/ChangeLog-2015 b/sci-chemistry/procheck/ChangeLog-2015 new file mode 100644 index 00000000..63a58f7b --- /dev/null +++ b/sci-chemistry/procheck/ChangeLog-2015 @@ -0,0 +1,48 @@ +# ChangeLog for sci-chemistry/procheck +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/procheck/ChangeLog,v 1.11 2015/01/05 20:20:04 jlec Exp $ + +*procheck-3.5.4-r2 (05 Jan 2015) + + 05 Jan 2015; Justin Lecher +procheck-3.5.4-r2.ebuild, + +files/procheck-3.5.4-close.patch, metadata.xml: + Add patch to fix problems with newer gfortran, thanks xarthisius for the + patch + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 19 Oct 2012; Justin Lecher procheck-3.5.4-r1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 09 Jul 2012; Johannes Huber procheck-3.5.4-r1.ebuild: + Stable for x86, wrt bug #419877 + + 12 Jun 2012; Agostino Sarubbo procheck-3.5.4-r1.ebuild: + Stable for amd64, wrt bug #419877 + + 21 Jun 2011; Justin Lecher procheck-3.5.4-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher procheck-3.5.4-r1.ebuild: + Added fortran-2.eclass support + + 16 Dec 2010; Justin Lecher procheck-3.5.4-r1.ebuild: + Removal of fortran.eclass, #348851 + +*procheck-3.5.4-r1 (19 Jul 2010) + + 19 Jul 2010; Justin Lecher -procheck-3.5.4.ebuild, + +procheck-3.5.4-r1.ebuild: + install 30procheck into env.d not profile.d + + 19 Jul 2010; Justin Lecher procheck-3.5.4.ebuild: + Cleaned SRC_URI + +*procheck-3.5.4 (18 Jul 2010) + + 18 Jul 2010; Justin Lecher +files/3.5.4-ldflags.patch, + +procheck-3.5.4.ebuild, +metadata.xml: + New Addition diff --git a/sci-chemistry/prodecomp/ChangeLog b/sci-chemistry/prodecomp/ChangeLog deleted file mode 100644 index 766eb826..00000000 --- a/sci-chemistry/prodecomp/ChangeLog +++ /dev/null @@ -1,13 +0,0 @@ -# ChangeLog for sci-chemistry/prodecomp -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/ChangeLog,v 1.2 2015/04/15 14:18:54 jlec Exp $ - - 15 Apr 2015; Justin Lecher metadata.xml, - prodecomp-3.0.ebuild: - Drop old; Bump EAPI and python eclasses - -*prodecomp-3.0 (20 Oct 2010) - - 20 Oct 2010; Justin Lecher +prodecomp-3.0.ebuild, - +metadata.xml: - Initital addition diff --git a/sci-chemistry/prodecomp/ChangeLog-2015 b/sci-chemistry/prodecomp/ChangeLog-2015 new file mode 100644 index 00000000..766eb826 --- /dev/null +++ b/sci-chemistry/prodecomp/ChangeLog-2015 @@ -0,0 +1,13 @@ +# ChangeLog for sci-chemistry/prodecomp +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prodecomp/ChangeLog,v 1.2 2015/04/15 14:18:54 jlec Exp $ + + 15 Apr 2015; Justin Lecher metadata.xml, + prodecomp-3.0.ebuild: + Drop old; Bump EAPI and python eclasses + +*prodecomp-3.0 (20 Oct 2010) + + 20 Oct 2010; Justin Lecher +prodecomp-3.0.ebuild, + +metadata.xml: + Initital addition diff --git a/sci-chemistry/propka/ChangeLog b/sci-chemistry/propka/ChangeLog deleted file mode 100644 index 5a34cfcd..00000000 --- a/sci-chemistry/propka/ChangeLog +++ /dev/null @@ -1,18 +0,0 @@ -# ChangeLog for sci-chemistry/propka -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/propka/ChangeLog,v 1.4 2015/02/11 17:03:13 jlec Exp $ - - 11 Feb 2015; Justin Lecher propka-3.1_p140511.ebuild: - Add RESTRICT="mirror bindist", #539784 - - 30 Jun 2014; Mike Gilbert propka-3.1_p140511.ebuild: - Depend on setuptools. - - 11 May 2014; Justin Lecher propka-3.1_p140511.ebuild: - Install unversioned symlink - -*propka-3.1_p140511 (11 May 2014) - - 11 May 2014; Justin Lecher +propka-3.1_p140511.ebuild, - +metadata.xml: - New package written by me diff --git a/sci-chemistry/propka/ChangeLog-2015 b/sci-chemistry/propka/ChangeLog-2015 new file mode 100644 index 00000000..5a34cfcd --- /dev/null +++ b/sci-chemistry/propka/ChangeLog-2015 @@ -0,0 +1,18 @@ +# ChangeLog for sci-chemistry/propka +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/propka/ChangeLog,v 1.4 2015/02/11 17:03:13 jlec Exp $ + + 11 Feb 2015; Justin Lecher propka-3.1_p140511.ebuild: + Add RESTRICT="mirror bindist", #539784 + + 30 Jun 2014; Mike Gilbert propka-3.1_p140511.ebuild: + Depend on setuptools. + + 11 May 2014; Justin Lecher propka-3.1_p140511.ebuild: + Install unversioned symlink + +*propka-3.1_p140511 (11 May 2014) + + 11 May 2014; Justin Lecher +propka-3.1_p140511.ebuild, + +metadata.xml: + New package written by me diff --git a/sci-chemistry/psi/ChangeLog b/sci-chemistry/psi/ChangeLog deleted file mode 100644 index 0f87b936..00000000 --- a/sci-chemistry/psi/ChangeLog +++ /dev/null @@ -1,109 +0,0 @@ -# ChangeLog for sci-chemistry/psi -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/psi/ChangeLog,v 1.23 2013/02/19 16:31:05 jlec Exp $ - - 19 Feb 2013; Justin Lecher psi-3.4.0-r2.ebuild: - Add missing dep on virtual/pkgconfig - - 19 Feb 2013; Justin Lecher - -files/psi-3.3.0-parallel-make.patch, psi-3.4.0-r2.ebuild, - -files/3.3.0-gcc-4.3.patch, -files/add-libint-error-message.patch, - -files/dont-build-libint.patch, -files/try-more-compilers.patch, - -files/try-pthread-for-blas-lapack.patch, metadata.xml: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; - drop old patches - - 19 Oct 2012; Justin Lecher psi-3.4.0-r2.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Dec 2011; Justin Lecher -psi-3.2.3.ebuild, - -psi-3.3.0.ebuild, -psi-3.4.0-r1.ebuild: - Cleaned old - - 21 Dec 2011; Pawel Hajdan jr psi-3.4.0-r2.ebuild: - x86 stable wrt bug #393873 - - 16 Dec 2011; Agostino Sarubbo psi-3.4.0-r2.ebuild: - Stable for AMD64, wrt bug #393873 - - 16 Dec 2011; Justin Lecher psi-3.4.0-r2.ebuild: - Moved to autotoolutils.eclass, fixed detection of lapack - - 21 Jun 2011; Justin Lecher psi-3.2.3.ebuild, - psi-3.3.0.ebuild, psi-3.4.0-r1.ebuild, psi-3.4.0-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher psi-3.2.3.ebuild, - psi-3.3.0.ebuild, psi-3.4.0-r1.ebuild, psi-3.4.0-r2.ebuild: - Added fortran-2.eclass support - -*psi-3.4.0-r2 (25 Apr 2011) - - 25 Apr 2011; Justin Lecher +files/3.4.0-fortify.patch, - +psi-3.4.0-r2.ebuild: - _FORTIFY_SOURCE indicates presence of overflow Fix, #341715 - -*psi-3.4.0-r1 (06 Jul 2010) - - 06 Jul 2010; Justin Lecher +files/3.4.0-ldflags.patch, - -psi-3.4.0.ebuild, +files/3.4.0-man_paths.patch, - +files/3.4.0-parallel_fix.patch, +psi-3.4.0-r1.ebuild: - Prll build fix, sanbox violation fix, #326185, LDFLAGS respected, thanks - to Xarthisius providing the patches - -*psi-3.4.0 (24 Jun 2010) - - 24 Jun 2010; Justin Lecher +files/3.4.0-destdir.patch, - +psi-3.4.0.ebuild, +files/psi-3.4.0-parallel-make.patch, - +files/3.4.0-dont-build-libint.patch, +files/3.4.0-gcc-4.3.patch: - Version Bump, #279566 - - 26 Feb 2010; Markus Dittrich psi-3.2.3.ebuild: - Fixed some QA issues. - - 26 Feb 2010; Markus Dittrich psi-3.3.0.ebuild, - +files/psi-3.3.0-parallel-make.patch: - Added parallel make patch (fixes #305249). Thanks much to - Kacper Kowalik for his patch. - - 19 Feb 2009; Andrey Grozin psi-3.3.0.ebuild: - A typo in dependencies fixed in 3.3.0 - - 07 Dec 2008; Andrey Grozin psi-3.2.3.ebuild, - psi-3.3.0.ebuild: - Fixing file collision with sci-visualization/extrema, bug #249423. - -*psi-3.3.0 (07 Jul 2008) - - 07 Jul 2008; Donnie Berkholz ; - +files/3.3.0-gcc-4.3.patch, +psi-3.3.0.ebuild: - (#202980) Bump. Add a gcc-4.3 patch, pull in the latest libint, keyword - ~amd64, add src_test() to call the test suite. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; psi-3.2.3.ebuild: - x86 stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*psi-3.2.3 (12 Feb 2006) - - 12 Feb 2006; Donnie Berkholz ; - +files/add-libint-error-message.patch, +files/dont-build-libint.patch, - +files/try-more-compilers.patch, +files/try-pthread-for-blas-lapack.patch, - +files/use-external-libint.patch, +metadata.xml, +psi-3.2.3.ebuild: - Add a GPL suite of ab initio quantum chemistry programs to compute various - molecular properties. - diff --git a/sci-chemistry/psi/ChangeLog-2015 b/sci-chemistry/psi/ChangeLog-2015 new file mode 100644 index 00000000..0f87b936 --- /dev/null +++ b/sci-chemistry/psi/ChangeLog-2015 @@ -0,0 +1,109 @@ +# ChangeLog for sci-chemistry/psi +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/psi/ChangeLog,v 1.23 2013/02/19 16:31:05 jlec Exp $ + + 19 Feb 2013; Justin Lecher psi-3.4.0-r2.ebuild: + Add missing dep on virtual/pkgconfig + + 19 Feb 2013; Justin Lecher + -files/psi-3.3.0-parallel-make.patch, psi-3.4.0-r2.ebuild, + -files/3.3.0-gcc-4.3.patch, -files/add-libint-error-message.patch, + -files/dont-build-libint.patch, -files/try-more-compilers.patch, + -files/try-pthread-for-blas-lapack.patch, metadata.xml: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config; + drop old patches + + 19 Oct 2012; Justin Lecher psi-3.4.0-r2.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Dec 2011; Justin Lecher -psi-3.2.3.ebuild, + -psi-3.3.0.ebuild, -psi-3.4.0-r1.ebuild: + Cleaned old + + 21 Dec 2011; Pawel Hajdan jr psi-3.4.0-r2.ebuild: + x86 stable wrt bug #393873 + + 16 Dec 2011; Agostino Sarubbo psi-3.4.0-r2.ebuild: + Stable for AMD64, wrt bug #393873 + + 16 Dec 2011; Justin Lecher psi-3.4.0-r2.ebuild: + Moved to autotoolutils.eclass, fixed detection of lapack + + 21 Jun 2011; Justin Lecher psi-3.2.3.ebuild, + psi-3.3.0.ebuild, psi-3.4.0-r1.ebuild, psi-3.4.0-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher psi-3.2.3.ebuild, + psi-3.3.0.ebuild, psi-3.4.0-r1.ebuild, psi-3.4.0-r2.ebuild: + Added fortran-2.eclass support + +*psi-3.4.0-r2 (25 Apr 2011) + + 25 Apr 2011; Justin Lecher +files/3.4.0-fortify.patch, + +psi-3.4.0-r2.ebuild: + _FORTIFY_SOURCE indicates presence of overflow Fix, #341715 + +*psi-3.4.0-r1 (06 Jul 2010) + + 06 Jul 2010; Justin Lecher +files/3.4.0-ldflags.patch, + -psi-3.4.0.ebuild, +files/3.4.0-man_paths.patch, + +files/3.4.0-parallel_fix.patch, +psi-3.4.0-r1.ebuild: + Prll build fix, sanbox violation fix, #326185, LDFLAGS respected, thanks + to Xarthisius providing the patches + +*psi-3.4.0 (24 Jun 2010) + + 24 Jun 2010; Justin Lecher +files/3.4.0-destdir.patch, + +psi-3.4.0.ebuild, +files/psi-3.4.0-parallel-make.patch, + +files/3.4.0-dont-build-libint.patch, +files/3.4.0-gcc-4.3.patch: + Version Bump, #279566 + + 26 Feb 2010; Markus Dittrich psi-3.2.3.ebuild: + Fixed some QA issues. + + 26 Feb 2010; Markus Dittrich psi-3.3.0.ebuild, + +files/psi-3.3.0-parallel-make.patch: + Added parallel make patch (fixes #305249). Thanks much to + Kacper Kowalik for his patch. + + 19 Feb 2009; Andrey Grozin psi-3.3.0.ebuild: + A typo in dependencies fixed in 3.3.0 + + 07 Dec 2008; Andrey Grozin psi-3.2.3.ebuild, + psi-3.3.0.ebuild: + Fixing file collision with sci-visualization/extrema, bug #249423. + +*psi-3.3.0 (07 Jul 2008) + + 07 Jul 2008; Donnie Berkholz ; + +files/3.3.0-gcc-4.3.patch, +psi-3.3.0.ebuild: + (#202980) Bump. Add a gcc-4.3 patch, pull in the latest libint, keyword + ~amd64, add src_test() to call the test suite. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; psi-3.2.3.ebuild: + x86 stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*psi-3.2.3 (12 Feb 2006) + + 12 Feb 2006; Donnie Berkholz ; + +files/add-libint-error-message.patch, +files/dont-build-libint.patch, + +files/try-more-compilers.patch, +files/try-pthread-for-blas-lapack.patch, + +files/use-external-libint.patch, +metadata.xml, +psi-3.2.3.ebuild: + Add a GPL suite of ab initio quantum chemistry programs to compute various + molecular properties. + diff --git a/sci-chemistry/pymol-apbs-plugin/ChangeLog b/sci-chemistry/pymol-apbs-plugin/ChangeLog deleted file mode 100644 index 3981f915..00000000 --- a/sci-chemistry/pymol-apbs-plugin/ChangeLog +++ /dev/null @@ -1,80 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-apbs-plugin -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-apbs-plugin/ChangeLog,v 1.16 2015/04/08 18:22:14 mgorny Exp $ - - 08 Apr 2015; Michał Górny - pymol-apbs-plugin-2.1_p26.ebuild: - Drop old Python implementations - - 13 Aug 2014; Andreas Schuerch - pymol-apbs-plugin-2.1_p26-r1.ebuild: - x86 stable, see bug 507142 - -*pymol-apbs-plugin-2.1_p26-r1 (22 Jul 2014) - - 22 Jul 2014; Justin Lecher - +pymol-apbs-plugin-2.1_p26-r1.ebuild: - Fix double prefix - - 10 Jul 2014; Chema Alonso - pymol-apbs-plugin-2.1_p26.ebuild: - Stable for amd64 wrt bug #507142 - -*pymol-apbs-plugin-2.1_p26 (22 Nov 2013) - - 22 Nov 2013; Justin Lecher - +pymol-apbs-plugin-2.1_p26.ebuild, - +files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch, metadata.xml: - Version Bump, add fix for tcltk8.6 support - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - -*pymol-apbs-plugin-2.1_p24 (11 Nov 2010) - - 11 Nov 2010; Justin Lecher - +pymol-apbs-plugin-2.1_p24.ebuild: - Version Bump - - 24 Jun 2010; Christoph Mende - pymol-apbs-plugin-0_p18.ebuild: - Stable on amd64 wrt bug #309007 - - 09 Jun 2010; Justin Lecher - -pymol-apbs-plugin-0_p11.ebuild, pymol-apbs-plugin-0_p15.ebuild, - +pymol-apbs-plugin-0_p18.ebuild: - Version Bump, fixes for python.eclass usage, removed old version - -*pymol-apbs-plugin-0_p18 (09 Jun 2010) - - 09 Jun 2010; Justin Lecher - pymol-apbs-plugin-0_p15.ebuild, +pymol-apbs-plugin-0_p18.ebuild: - Version Bump, fixes for python.eclass usage - - 23 Mar 2010; Christian Faulhammer - pymol-apbs-plugin-0_p15.ebuild: - stable x86, bug 309007 - - 11 Mar 2010; Joseph Jezak - pymol-apbs-plugin-0_p15.ebuild: - Marked ~ppc. - - 23 Feb 2010; Justin Lecher (jlec) - pymol-apbs-plugin-0_p15.ebuild: - RESTRICT_PYTHON_ABIS="3.*" - - 19 Feb 2010; Justin Lecher (jlec) - pymol-apbs-plugin-0_p15.ebuild: - keyworded for {amd64,x86}-linux - -*pymol-apbs-plugin-0_p15 (11 Feb 2010) - - 11 Feb 2010; Justin Lecher (jlec) - +pymol-apbs-plugin-0_p15.ebuild: - Version Bump, EAPI=3 and multiple python support - -*pymol-apbs-plugin-0_p11 (01 Feb 2010) - - 01 Feb 2010; Justin Lecher (jlec) - +pymol-apbs-plugin-0_p11.ebuild, +metadata.xml: - Seperated ebuild for pymol apbs plugin diff --git a/sci-chemistry/pymol-apbs-plugin/ChangeLog-2015 b/sci-chemistry/pymol-apbs-plugin/ChangeLog-2015 new file mode 100644 index 00000000..3981f915 --- /dev/null +++ b/sci-chemistry/pymol-apbs-plugin/ChangeLog-2015 @@ -0,0 +1,80 @@ +# ChangeLog for sci-chemistry/pymol-apbs-plugin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-apbs-plugin/ChangeLog,v 1.16 2015/04/08 18:22:14 mgorny Exp $ + + 08 Apr 2015; Michał Górny + pymol-apbs-plugin-2.1_p26.ebuild: + Drop old Python implementations + + 13 Aug 2014; Andreas Schuerch + pymol-apbs-plugin-2.1_p26-r1.ebuild: + x86 stable, see bug 507142 + +*pymol-apbs-plugin-2.1_p26-r1 (22 Jul 2014) + + 22 Jul 2014; Justin Lecher + +pymol-apbs-plugin-2.1_p26-r1.ebuild: + Fix double prefix + + 10 Jul 2014; Chema Alonso + pymol-apbs-plugin-2.1_p26.ebuild: + Stable for amd64 wrt bug #507142 + +*pymol-apbs-plugin-2.1_p26 (22 Nov 2013) + + 22 Nov 2013; Justin Lecher + +pymol-apbs-plugin-2.1_p26.ebuild, + +files/pymol-apbs-plugin-2.1_p26-tcltk8.6.patch, metadata.xml: + Version Bump, add fix for tcltk8.6 support + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + +*pymol-apbs-plugin-2.1_p24 (11 Nov 2010) + + 11 Nov 2010; Justin Lecher + +pymol-apbs-plugin-2.1_p24.ebuild: + Version Bump + + 24 Jun 2010; Christoph Mende + pymol-apbs-plugin-0_p18.ebuild: + Stable on amd64 wrt bug #309007 + + 09 Jun 2010; Justin Lecher + -pymol-apbs-plugin-0_p11.ebuild, pymol-apbs-plugin-0_p15.ebuild, + +pymol-apbs-plugin-0_p18.ebuild: + Version Bump, fixes for python.eclass usage, removed old version + +*pymol-apbs-plugin-0_p18 (09 Jun 2010) + + 09 Jun 2010; Justin Lecher + pymol-apbs-plugin-0_p15.ebuild, +pymol-apbs-plugin-0_p18.ebuild: + Version Bump, fixes for python.eclass usage + + 23 Mar 2010; Christian Faulhammer + pymol-apbs-plugin-0_p15.ebuild: + stable x86, bug 309007 + + 11 Mar 2010; Joseph Jezak + pymol-apbs-plugin-0_p15.ebuild: + Marked ~ppc. + + 23 Feb 2010; Justin Lecher (jlec) + pymol-apbs-plugin-0_p15.ebuild: + RESTRICT_PYTHON_ABIS="3.*" + + 19 Feb 2010; Justin Lecher (jlec) + pymol-apbs-plugin-0_p15.ebuild: + keyworded for {amd64,x86}-linux + +*pymol-apbs-plugin-0_p15 (11 Feb 2010) + + 11 Feb 2010; Justin Lecher (jlec) + +pymol-apbs-plugin-0_p15.ebuild: + Version Bump, EAPI=3 and multiple python support + +*pymol-apbs-plugin-0_p11 (01 Feb 2010) + + 01 Feb 2010; Justin Lecher (jlec) + +pymol-apbs-plugin-0_p11.ebuild, +metadata.xml: + Seperated ebuild for pymol apbs plugin diff --git a/sci-chemistry/pymol-plugins-bni-tools/ChangeLog b/sci-chemistry/pymol-plugins-bni-tools/ChangeLog deleted file mode 100644 index 37211af4..00000000 --- a/sci-chemistry/pymol-plugins-bni-tools/ChangeLog +++ /dev/null @@ -1,20 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-bni-tools -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-bni-tools/ChangeLog,v 1.4 2013/07/15 11:57:15 jlec Exp $ - -*pymol-plugins-bni-tools-0.27 (15 Jul 2013) - - 15 Jul 2013; Justin Lecher - +pymol-plugins-bni-tools-0.27.ebuild, metadata.xml: - Version Bump; move to new python eclasses - - 27 Feb 2010; Justin Lecher - pymol-plugins-bni-tools-0.25.1.ebuild: - keyworded for ~amd64-linux ~x86-linux - -*pymol-plugins-bni-tools-0.25.1 (27 Feb 2010) - - 27 Feb 2010; Justin Lecher - +pymol-plugins-bni-tools-0.25.1.ebuild, +metadata.xml: - Imported from sci overlay - diff --git a/sci-chemistry/pymol-plugins-bni-tools/ChangeLog-2015 b/sci-chemistry/pymol-plugins-bni-tools/ChangeLog-2015 new file mode 100644 index 00000000..37211af4 --- /dev/null +++ b/sci-chemistry/pymol-plugins-bni-tools/ChangeLog-2015 @@ -0,0 +1,20 @@ +# ChangeLog for sci-chemistry/pymol-plugins-bni-tools +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-bni-tools/ChangeLog,v 1.4 2013/07/15 11:57:15 jlec Exp $ + +*pymol-plugins-bni-tools-0.27 (15 Jul 2013) + + 15 Jul 2013; Justin Lecher + +pymol-plugins-bni-tools-0.27.ebuild, metadata.xml: + Version Bump; move to new python eclasses + + 27 Feb 2010; Justin Lecher + pymol-plugins-bni-tools-0.25.1.ebuild: + keyworded for ~amd64-linux ~x86-linux + +*pymol-plugins-bni-tools-0.25.1 (27 Feb 2010) + + 27 Feb 2010; Justin Lecher + +pymol-plugins-bni-tools-0.25.1.ebuild, +metadata.xml: + Imported from sci overlay + diff --git a/sci-chemistry/pymol-plugins-caver/ChangeLog b/sci-chemistry/pymol-plugins-caver/ChangeLog deleted file mode 100644 index c4b8adfa..00000000 --- a/sci-chemistry/pymol-plugins-caver/ChangeLog +++ /dev/null @@ -1,17 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-caver -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/ChangeLog,v 1.2 2015/04/15 14:14:33 jlec Exp $ - - 15 Apr 2015; Justin Lecher - -pymol-plugins-caver-2.1.1.ebuild, metadata.xml, - pymol-plugins-caver-2.1.2.ebuild: - Drop old; Bump EAPI and python eclasses - -*pymol-plugins-caver-2.1.2 (18 Mar 2011) -*pymol-plugins-caver-2.1.1 (18 Mar 2011) - - 18 Mar 2011; Justin Lecher - +pymol-plugins-caver-2.1.1.ebuild, +pymol-plugins-caver-2.1.2.ebuild, - +metadata.xml: - Moved from sci-chemistry/caver to sci-chemistry/pymol-plugins-caver, Version - Bump diff --git a/sci-chemistry/pymol-plugins-caver/ChangeLog-2015 b/sci-chemistry/pymol-plugins-caver/ChangeLog-2015 new file mode 100644 index 00000000..c4b8adfa --- /dev/null +++ b/sci-chemistry/pymol-plugins-caver/ChangeLog-2015 @@ -0,0 +1,17 @@ +# ChangeLog for sci-chemistry/pymol-plugins-caver +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-caver/ChangeLog,v 1.2 2015/04/15 14:14:33 jlec Exp $ + + 15 Apr 2015; Justin Lecher + -pymol-plugins-caver-2.1.1.ebuild, metadata.xml, + pymol-plugins-caver-2.1.2.ebuild: + Drop old; Bump EAPI and python eclasses + +*pymol-plugins-caver-2.1.2 (18 Mar 2011) +*pymol-plugins-caver-2.1.1 (18 Mar 2011) + + 18 Mar 2011; Justin Lecher + +pymol-plugins-caver-2.1.1.ebuild, +pymol-plugins-caver-2.1.2.ebuild, + +metadata.xml: + Moved from sci-chemistry/caver to sci-chemistry/pymol-plugins-caver, Version + Bump diff --git a/sci-chemistry/pymol-plugins-dssp/ChangeLog b/sci-chemistry/pymol-plugins-dssp/ChangeLog deleted file mode 100644 index 3727801e..00000000 --- a/sci-chemistry/pymol-plugins-dssp/ChangeLog +++ /dev/null @@ -1,29 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-dssp -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-dssp/ChangeLog,v 1.4 2013/12/02 11:14:18 jlec Exp $ - -*pymol-plugins-dssp-110430-r1 (02 Dec 2013) - - 02 Dec 2013; Justin Lecher - -pymol-plugins-dssp-110412.ebuild, -pymol-plugins-dssp-110413.ebuild, - +pymol-plugins-dssp-110430-r1.ebuild, metadata.xml: - Bump to python-r1.eclass; drop old - -*pymol-plugins-dssp-110430 (01 May 2011) - - 01 May 2011; Justin Lecher - +pymol-plugins-dssp-110430.ebuild: - Version Bump - -*pymol-plugins-dssp-110413 (17 Apr 2011) - - 17 Apr 2011; Justin Lecher - +pymol-plugins-dssp-110413.ebuild: - Version Bump - -*pymol-plugins-dssp-110412 (12 Apr 2011) - - 12 Apr 2011; Justin Lecher - +pymol-plugins-dssp-110412.ebuild, +metadata.xml: - New addition - diff --git a/sci-chemistry/pymol-plugins-dssp/ChangeLog-2015 b/sci-chemistry/pymol-plugins-dssp/ChangeLog-2015 new file mode 100644 index 00000000..3727801e --- /dev/null +++ b/sci-chemistry/pymol-plugins-dssp/ChangeLog-2015 @@ -0,0 +1,29 @@ +# ChangeLog for sci-chemistry/pymol-plugins-dssp +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-dssp/ChangeLog,v 1.4 2013/12/02 11:14:18 jlec Exp $ + +*pymol-plugins-dssp-110430-r1 (02 Dec 2013) + + 02 Dec 2013; Justin Lecher + -pymol-plugins-dssp-110412.ebuild, -pymol-plugins-dssp-110413.ebuild, + +pymol-plugins-dssp-110430-r1.ebuild, metadata.xml: + Bump to python-r1.eclass; drop old + +*pymol-plugins-dssp-110430 (01 May 2011) + + 01 May 2011; Justin Lecher + +pymol-plugins-dssp-110430.ebuild: + Version Bump + +*pymol-plugins-dssp-110413 (17 Apr 2011) + + 17 Apr 2011; Justin Lecher + +pymol-plugins-dssp-110413.ebuild: + Version Bump + +*pymol-plugins-dssp-110412 (12 Apr 2011) + + 12 Apr 2011; Justin Lecher + +pymol-plugins-dssp-110412.ebuild, +metadata.xml: + New addition + diff --git a/sci-chemistry/pymol-plugins-dynamics/ChangeLog b/sci-chemistry/pymol-plugins-dynamics/ChangeLog deleted file mode 100644 index e958fa1f..00000000 --- a/sci-chemistry/pymol-plugins-dynamics/ChangeLog +++ /dev/null @@ -1,18 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-dynamics -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-dynamics/ChangeLog,v 1.3 2015/04/08 18:22:14 mgorny Exp $ - - 08 Apr 2015; Michał Górny - pymol-plugins-dynamics-1.2.0.ebuild: - Drop old Python implementations - - 29 May 2013; Justin Lecher - pymol-plugins-dynamics-1.2.0.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, - PYTHON_DEPS) - -*pymol-plugins-dynamics-1.2.0 (16 May 2013) - - 16 May 2013; Justin Lecher - +pymol-plugins-dynamics-1.2.0.ebuild, +metadata.xml: - New addition on authors request diff --git a/sci-chemistry/pymol-plugins-dynamics/ChangeLog-2015 b/sci-chemistry/pymol-plugins-dynamics/ChangeLog-2015 new file mode 100644 index 00000000..e958fa1f --- /dev/null +++ b/sci-chemistry/pymol-plugins-dynamics/ChangeLog-2015 @@ -0,0 +1,18 @@ +# ChangeLog for sci-chemistry/pymol-plugins-dynamics +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-dynamics/ChangeLog,v 1.3 2015/04/08 18:22:14 mgorny Exp $ + + 08 Apr 2015; Michał Górny + pymol-plugins-dynamics-1.2.0.ebuild: + Drop old Python implementations + + 29 May 2013; Justin Lecher + pymol-plugins-dynamics-1.2.0.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, + PYTHON_DEPS) + +*pymol-plugins-dynamics-1.2.0 (16 May 2013) + + 16 May 2013; Justin Lecher + +pymol-plugins-dynamics-1.2.0.ebuild, +metadata.xml: + New addition on authors request diff --git a/sci-chemistry/pymol-plugins-emovie/ChangeLog b/sci-chemistry/pymol-plugins-emovie/ChangeLog deleted file mode 100644 index 922eeb23..00000000 --- a/sci-chemistry/pymol-plugins-emovie/ChangeLog +++ /dev/null @@ -1,15 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-emovie -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-emovie/ChangeLog,v 1.2 2010/04/25 11:30:48 jlec Exp $ - -*pymol-plugins-emovie-1.0.4 (25 Feb 2010) - - 25 Feb 2010; Justin Lecher - +files/1.0.4-indent.patch, +pymol-plugins-emovie-1.0.4.ebuild, - +metadata.xml: - eMovie is a free tool that makes the creation of molecular movies both - easy and intuitive via a breakthrough storyboard interface, similar in - nature to what is used in the creation of traditional movies. eMovie is a - plug-in for PyMOL, a powerful, open source, and multi-platform molecular - graphics program. - diff --git a/sci-chemistry/pymol-plugins-emovie/ChangeLog-2015 b/sci-chemistry/pymol-plugins-emovie/ChangeLog-2015 new file mode 100644 index 00000000..922eeb23 --- /dev/null +++ b/sci-chemistry/pymol-plugins-emovie/ChangeLog-2015 @@ -0,0 +1,15 @@ +# ChangeLog for sci-chemistry/pymol-plugins-emovie +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-emovie/ChangeLog,v 1.2 2010/04/25 11:30:48 jlec Exp $ + +*pymol-plugins-emovie-1.0.4 (25 Feb 2010) + + 25 Feb 2010; Justin Lecher + +files/1.0.4-indent.patch, +pymol-plugins-emovie-1.0.4.ebuild, + +metadata.xml: + eMovie is a free tool that makes the creation of molecular movies both + easy and intuitive via a breakthrough storyboard interface, similar in + nature to what is used in the creation of traditional movies. eMovie is a + plug-in for PyMOL, a powerful, open source, and multi-platform molecular + graphics program. + diff --git a/sci-chemistry/pymol-plugins-msms/ChangeLog b/sci-chemistry/pymol-plugins-msms/ChangeLog deleted file mode 100644 index af13415c..00000000 --- a/sci-chemistry/pymol-plugins-msms/ChangeLog +++ /dev/null @@ -1,20 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-msms -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.3 2013/12/02 11:10:59 jlec Exp $ - -*pymol-plugins-msms-100415-r1 (02 Dec 2013) - - 02 Dec 2013; Justin Lecher - +pymol-plugins-msms-100415-r1.ebuild, metadata.xml: - Bump to python-r1.eclass - - 22 Mar 2011; Justin Lecher - pymol-plugins-msms-100415.ebuild: - Byte-Compile script - -*pymol-plugins-msms-100415 (22 Mar 2011) - - 22 Mar 2011; Justin Lecher +files/100415-msms.patch, - +pymol-plugins-msms-100415.ebuild, +metadata.xml: - New Addition - diff --git a/sci-chemistry/pymol-plugins-msms/ChangeLog-2015 b/sci-chemistry/pymol-plugins-msms/ChangeLog-2015 new file mode 100644 index 00000000..af13415c --- /dev/null +++ b/sci-chemistry/pymol-plugins-msms/ChangeLog-2015 @@ -0,0 +1,20 @@ +# ChangeLog for sci-chemistry/pymol-plugins-msms +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.3 2013/12/02 11:10:59 jlec Exp $ + +*pymol-plugins-msms-100415-r1 (02 Dec 2013) + + 02 Dec 2013; Justin Lecher + +pymol-plugins-msms-100415-r1.ebuild, metadata.xml: + Bump to python-r1.eclass + + 22 Mar 2011; Justin Lecher + pymol-plugins-msms-100415.ebuild: + Byte-Compile script + +*pymol-plugins-msms-100415 (22 Mar 2011) + + 22 Mar 2011; Justin Lecher +files/100415-msms.patch, + +pymol-plugins-msms-100415.ebuild, +metadata.xml: + New Addition + diff --git a/sci-chemistry/pymol-plugins-promol/ChangeLog b/sci-chemistry/pymol-plugins-promol/ChangeLog deleted file mode 100644 index 5da861f7..00000000 --- a/sci-chemistry/pymol-plugins-promol/ChangeLog +++ /dev/null @@ -1,39 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-promol -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-promol/ChangeLog,v 1.9 2015/02/12 08:15:22 jlec Exp $ - - 12 Feb 2015; Justin Lecher - pymol-plugins-promol-3.0.2-r1.ebuild: - Fix typo and fetch from upstream directly, #539786 - - 11 Feb 2015; Justin Lecher - -pymol-plugins-promol-3.0.2.ebuild, pymol-plugins-promol-3.0.2-r1.ebuild: - Drop old, restrict bindist, #539786 - - 29 May 2013; Justin Lecher - pymol-plugins-promol-3.0.2-r1.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) - - 20 May 2013; Justin Lecher - pymol-plugins-promol-3.0.2.ebuild, pymol-plugins-promol-3.0.2-r1.ebuild: - Change license to a-r-r and RESTRICT=mirror, #465592 - -*pymol-plugins-promol-3.0.2-r1 (30 Jan 2013) - - 30 Jan 2013; Justin Lecher - +pymol-plugins-promol-3.0.2-r1.ebuild: - Move to new python eclasses, #453574 - - 22 Jan 2013; Justin Lecher - pymol-plugins-promol-3.0.2.ebuild, metadata.xml: - Fix SLOT for pmw - - 03 Mar 2010; Justin Lecher - pymol-plugins-promol-3.0.2.ebuild: - Fixed for PREFIX - -*pymol-plugins-promol-3.0.2 (20 Feb 2010) - - 20 Feb 2010; Justin Lecher - +pymol-plugins-promol-3.0.2.ebuild, +metadata.xml: - ProMol plugin for pymol, grep from #209970 diff --git a/sci-chemistry/pymol-plugins-promol/ChangeLog-2015 b/sci-chemistry/pymol-plugins-promol/ChangeLog-2015 new file mode 100644 index 00000000..5da861f7 --- /dev/null +++ b/sci-chemistry/pymol-plugins-promol/ChangeLog-2015 @@ -0,0 +1,39 @@ +# ChangeLog for sci-chemistry/pymol-plugins-promol +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-promol/ChangeLog,v 1.9 2015/02/12 08:15:22 jlec Exp $ + + 12 Feb 2015; Justin Lecher + pymol-plugins-promol-3.0.2-r1.ebuild: + Fix typo and fetch from upstream directly, #539786 + + 11 Feb 2015; Justin Lecher + -pymol-plugins-promol-3.0.2.ebuild, pymol-plugins-promol-3.0.2-r1.ebuild: + Drop old, restrict bindist, #539786 + + 29 May 2013; Justin Lecher + pymol-plugins-promol-3.0.2-r1.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE) + + 20 May 2013; Justin Lecher + pymol-plugins-promol-3.0.2.ebuild, pymol-plugins-promol-3.0.2-r1.ebuild: + Change license to a-r-r and RESTRICT=mirror, #465592 + +*pymol-plugins-promol-3.0.2-r1 (30 Jan 2013) + + 30 Jan 2013; Justin Lecher + +pymol-plugins-promol-3.0.2-r1.ebuild: + Move to new python eclasses, #453574 + + 22 Jan 2013; Justin Lecher + pymol-plugins-promol-3.0.2.ebuild, metadata.xml: + Fix SLOT for pmw + + 03 Mar 2010; Justin Lecher + pymol-plugins-promol-3.0.2.ebuild: + Fixed for PREFIX + +*pymol-plugins-promol-3.0.2 (20 Feb 2010) + + 20 Feb 2010; Justin Lecher + +pymol-plugins-promol-3.0.2.ebuild, +metadata.xml: + ProMol plugin for pymol, grep from #209970 diff --git a/sci-chemistry/pymol-plugins-psico/ChangeLog b/sci-chemistry/pymol-plugins-psico/ChangeLog deleted file mode 100644 index 8a315998..00000000 --- a/sci-chemistry/pymol-plugins-psico/ChangeLog +++ /dev/null @@ -1,33 +0,0 @@ -# ChangeLog for sci-chemistry/pymol-plugins-psico -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-psico/ChangeLog,v 1.6 2015/05/29 07:01:07 jlec Exp $ - -*pymol-plugins-psico-3.1-r1 (29 May 2015) - - 29 May 2015; Justin Lecher - +pymol-plugins-psico-3.1-r1.ebuild, -pymol-plugins-psico-3.0.ebuild, - -pymol-plugins-psico-3.1.ebuild, metadata.xml: - Move to EAPI=5 and new python eclasses, bug #544720; thanks Ian Delaney for - the patch - - 06 Nov 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild, - pymol-plugins-psico-3.1.ebuild: - Correct for moving of mmtk from sci-chemistry to sci-libs - -*pymol-plugins-psico-3.1 (09 Sep 2012) - - 09 Sep 2012; Justin Lecher +pymol-plugins-psico-3.1.ebuild: - Version Bump - - 24 Mar 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild: - Add sci-chemistry/ccp4-apps to DEPs for dyndom, thanks urcindalo pointing me - to this - - 22 Mar 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild: - Add keywords - -*pymol-plugins-psico-3.0 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +pymol-plugins-psico-3.0.ebuild, - +metadata.xml: - New addition, written by me, #408995 diff --git a/sci-chemistry/pymol-plugins-psico/ChangeLog-2015 b/sci-chemistry/pymol-plugins-psico/ChangeLog-2015 new file mode 100644 index 00000000..8a315998 --- /dev/null +++ b/sci-chemistry/pymol-plugins-psico/ChangeLog-2015 @@ -0,0 +1,33 @@ +# ChangeLog for sci-chemistry/pymol-plugins-psico +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-psico/ChangeLog,v 1.6 2015/05/29 07:01:07 jlec Exp $ + +*pymol-plugins-psico-3.1-r1 (29 May 2015) + + 29 May 2015; Justin Lecher + +pymol-plugins-psico-3.1-r1.ebuild, -pymol-plugins-psico-3.0.ebuild, + -pymol-plugins-psico-3.1.ebuild, metadata.xml: + Move to EAPI=5 and new python eclasses, bug #544720; thanks Ian Delaney for + the patch + + 06 Nov 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild, + pymol-plugins-psico-3.1.ebuild: + Correct for moving of mmtk from sci-chemistry to sci-libs + +*pymol-plugins-psico-3.1 (09 Sep 2012) + + 09 Sep 2012; Justin Lecher +pymol-plugins-psico-3.1.ebuild: + Version Bump + + 24 Mar 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild: + Add sci-chemistry/ccp4-apps to DEPs for dyndom, thanks urcindalo pointing me + to this + + 22 Mar 2012; Justin Lecher pymol-plugins-psico-3.0.ebuild: + Add keywords + +*pymol-plugins-psico-3.0 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +pymol-plugins-psico-3.0.ebuild, + +metadata.xml: + New addition, written by me, #408995 diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog deleted file mode 100644 index c80f2f89..00000000 --- a/sci-chemistry/pymol/ChangeLog +++ /dev/null @@ -1,256 +0,0 @@ -# ChangeLog for sci-chemistry/pymol -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.130 2015/05/26 14:05:52 jlec Exp $ - - 26 May 2015; Justin Lecher pymol-1.7.0.1.ebuild: - Move to virtual - -*pymol-1.7.6.0 (05 May 2015) - - 05 May 2015; Justin Lecher +pymol-1.7.6.0.ebuild: - Version Bump - - 16 Mar 2015; Justin Lecher pymol-1.7.0.1.ebuild, - pymol-1.7.4.0.ebuild: - Move to virtual/pmw - - 22 Jan 2015; Justin Lecher -pymol-1.5.0.3-r1.ebuild, - -pymol-1.5.0.3-r2.ebuild, -pymol-1.6.0_rc1.ebuild, -pymol-1.6.0.0.ebuild, - -pymol-1.6.0.0-r1.ebuild, -pymol-1.6.0.0-r2.ebuild, -pymol-1.7.0.0.ebuild, - -pymol-1.7.0.4.ebuild, -pymol-1.7.0.4-r1.ebuild, -pymol-1.7.1.1.ebuild, - -pymol-1.7.1.3.ebuild, -pymol-1.7.2.0.ebuild, -pymol-1.7.2.1.ebuild, - -pymol-1.7.3.0.ebuild, -pymol-1.7.3.1.ebuild, -pymol-1.7.3.2.ebuild, - -pymol-1.7.3.4.ebuild, -files/pymol-1.5.0.1-data-path.patch, - -files/pymol-1.5.0.1-flags.patch, -files/pymol-1.5.0.1-setup.py.patch, - -files/pymol-1.5.0.1-vmd.patch, -files/pymol-1.5.0.1-web.patch, - -files/pymol-1.5.0.3-prefix.patch, -files/pymol-1.5.0.3-web.patch, - -files/pymol-1.6.0.0-bg_rgb.patch, -files/pymol-1.6.0.0-labels.patch, - -files/pymol-1.6.0.0-stereo.patch, - -files/pymol-1.7.0.4-fix-broken-label-scaling-on-Linux.patch, - -files/pymol-9999-listing.patch, -files/1.2.1/nosplash-gentoo.patch, - -files/pymol-9999-options.patch, metadata.xml: - Drop old - - 22 Jan 2015; Sergey Popov pymol-1.5.0.3-r1.ebuild: - Drop to ~ppc, wrt bug #507142 - - 04 Dec 2014; Patrick Lauer pymol-1.7.4.0.ebuild: - Remove unneeded blank line on last line - -*pymol-1.7.4.0 (04 Dec 2014) - - 04 Dec 2014; Justin Lecher +pymol-1.7.4.0.ebuild: - Version Bump - -*pymol-1.7.3.4 (21 Nov 2014) - - 21 Nov 2014; Justin Lecher +pymol-1.7.3.4.ebuild: - Version Bump - - 27 Oct 2014; Justin Lecher pymol-1.7.3.2.ebuild: - Add missing PYTHON_USEDEP - -*pymol-1.7.3.2 (20 Oct 2014) - - 20 Oct 2014; Justin Lecher +pymol-1.7.3.2.ebuild, - +files/pymol-9999-listing.patch, +files/pymol-9999-options.patch: - Version Bump - -*pymol-1.7.3.1 (17 Oct 2014) - - 17 Oct 2014; Justin Lecher +pymol-1.7.3.1.ebuild, - +files/pymol-1.7.3.1-maeffplugin.cpp.patch: - Version Bump - -*pymol-1.7.3.0 (15 Sep 2014) - - 15 Sep 2014; Justin Lecher +pymol-1.7.3.0.ebuild: - Version Bump - -*pymol-1.7.2.1 (21 Aug 2014) - - 21 Aug 2014; Justin Lecher +pymol-1.7.2.1.ebuild: - Version Bump - - 13 Aug 2014; Andreas Schuerch pymol-1.7.0.1.ebuild: - x86 stable, see bug 507142 - -*pymol-1.7.2.0 (11 Aug 2014) - - 11 Aug 2014; Justin Lecher +pymol-1.7.2.0.ebuild: - Version Bump - - 10 Jul 2014; Chema Alonso pymol-1.7.0.1.ebuild: - Stable for amd64 wrt bug #507142 - -*pymol-1.7.1.3 (14 May 2014) - - 14 May 2014; Justin Lecher +pymol-1.7.1.3.ebuild: - Version Bump - - 01 May 2014; Justin Lecher pymol-1.5.0.3-r1.ebuild, - pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild, - pymol-1.6.0.0-r1.ebuild, pymol-1.6.0.0-r2.ebuild, pymol-1.7.0.0.ebuild, - pymol-1.7.0.1.ebuild, pymol-1.7.0.4.ebuild, pymol-1.7.0.4-r1.ebuild, - pymol-1.7.1.1.ebuild: - Drop unneeded dep - -*pymol-1.7.1.1 (08 Apr 2014) - - 08 Apr 2014; Justin Lecher +pymol-1.7.1.1.ebuild: - Version Bump - -*pymol-1.7.0.4-r1 (13 Mar 2014) - - 13 Mar 2014; Justin Lecher +pymol-1.7.0.4-r1.ebuild, - +files/pymol-1.7.0.4-fix-broken-label-scaling-on-Linux.patch: - Backport fix for broken labels - -*pymol-1.7.0.4 (10 Mar 2014) - - 10 Mar 2014; Justin Lecher +pymol-1.7.0.4.ebuild: - Version Bump - - 26 Jan 2014; Justin Lecher ChangeLog: - Update HOMEPAGE - -*pymol-1.7.0.1 (26 Jan 2014) - - 26 Jan 2014; Justin Lecher +pymol-1.7.0.1.ebuild: - Version Bump - - 26 Jan 2014; Justin Lecher pymol-1.5.0.3-r1.ebuild, - pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild, - pymol-1.6.0.0-r1.ebuild, pymol-1.6.0.0-r2.ebuild, pymol-1.7.0.0.ebuild: - Update HOMEPAGE - - 15 Jan 2014; Justin Lecher pymol-1.7.0.0.ebuild: - Supress unnecessary argparse import - -*pymol-1.7.0.0 (15 Jan 2014) - - 15 Jan 2014; Justin Lecher +pymol-1.7.0.0.ebuild: - Version Bump - -*pymol-1.6.0.0-r2 (16 Jul 2013) - - 16 Jul 2013; Justin Lecher +pymol-1.6.0.0-r2.ebuild, - +files/pymol-1.6.0.0-stereo.patch: - Backport fix for stereo flickering - -*pymol-1.6.0.0-r1 (18 Jun 2013) - - 18 Jun 2013; Justin Lecher +pymol-1.6.0.0-r1.ebuild, - +files/pymol-1.6.0.0-bg_rgb.patch, +files/pymol-1.6.0.0-labels.patch: - Add backports of upstream bugfixes - -*pymol-1.6.0.0 (12 Jun 2013) - - 12 Jun 2013; Justin Lecher +pymol-1.6.0.0.ebuild: - Version Bump - -*pymol-1.6.0_rc1 (25 Mar 2013) - - 25 Mar 2013; Justin Lecher pymol-1.5.0.3-r2.ebuild, - +pymol-1.6.0_rc1.ebuild: - Version Bump - - 19 Mar 2013; Justin Lecher pymol-1.5.0.3-r2.ebuild: - Prefix love - -*pymol-1.5.0.3-r2 (30 Jan 2013) - - 30 Jan 2013; Justin Lecher +pymol-1.5.0.3-r2.ebuild: - Move to new python eclasses, #453572 - - 22 Jan 2013; Justin Lecher pymol-1.5.0.3-r1.ebuild, - metadata.xml: - Fix SLOT for pmw - - 15 Oct 2012; Justin Lecher pymol-1.5.0.3-r1.ebuild: - Add mime type definition - - 06 Oct 2012; Justin Lecher - -files/pymol-0.99_rc10-data-path.patch, -files/pymol-1.2.2-data-path.patch, - -files/pymol-1.2.2-prefix.patch, -files/pymol-1.2.2-shaders.patch, - -files/pymol-1.2.2-vmd.patch, -files/pymol-1.3.0-vmd.patch, - -pymol-1.3.1_pre3925-r1.ebuild, -pymol-1.4.1.ebuild, - -files/pymol-1.4.1-data-path.patch, -files/pymol-1.4.1-shaders.patch, - -files/pymol-1.4.1-web.patch, -files/pymol-1.4-shaders.patch, - -files/pymol-1.4-vmd.patch, -pymol-1.5.0.1.ebuild, - -files/pymol-1.5.0.1-prefix.patch, -pymol-1.5.0.2.ebuild, - -pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild, metadata.xml: - Add fix for OSX prefix and keyword ~x64-macos ~x86-macos; #437324; Drop old - - 23 Sep 2012; Pawel Hajdan jr pymol-1.5.0.3-r1.ebuild: - x86 stable wrt bug #431120 - - 14 Aug 2012; Anthony G. Basile pymol-1.5.0.3-r1.ebuild: - Stable ppc, bug #431120 - - 14 Aug 2012; Agostino Sarubbo pymol-1.5.0.3-r1.ebuild: - Stable for amd64, wrt bug #431120 - - 14 Aug 2012; Justin Lecher pymol-1.5.0.3-r1.ebuild: - Add aditional messages for crashing shader support - - 12 Aug 2012; Justin Lecher pymol-1.5.0.1.ebuild, - pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild: - Correct Desktop entry - - 04 Jun 2012; Michael Weber pymol-1.3.1_pre3925-r1.ebuild: - ppc stable (bug 366229) - - 29 Mar 2012; Justin Lecher pymol-1.5.0.1.ebuild, - pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild: - Add new icon files provided by Ramiro Téllez Sanz - -*pymol-1.5.0.3-r1 (28 Mar 2012) - - 28 Mar 2012; Justin Lecher - files/pymol-1.5.0.1-data-path.patch, +pymol-1.5.0.3-r1.ebuild: - Add missing wrong usage of PYMOL_PATH, #409971 - -*pymol-1.5.0.3 (10 Mar 2012) - - 10 Mar 2012; Justin Lecher +pymol-1.5.0.3.ebuild, - +files/pymol-1.5.0.3-prefix.patch, +files/pymol-1.5.0.3-web.patch: - Version Bump - -*pymol-1.5.0.2 (27 Feb 2012) - - 27 Feb 2012; Justin Lecher pymol-1.5.0.1.ebuild, - +pymol-1.5.0.2.ebuild: - Version Bump - - 26 Feb 2012; Patrick Lauer pymol-1.3.1_pre3925-r1.ebuild, - pymol-1.4.1.ebuild, pymol-1.5.0.1.ebuild: - Restricting pypy and jython - - 14 Feb 2012; Justin Lecher -files/1.2.2-data-path.patch, - -files/1.2.1/pymol-1.2.1-data-path.patch, -files/1.2.2-prefix.patch, - -files/1.2.1/pymol-1.2.1-shaders.patch, -files/1.3.0-vmd.patch, - -pymol-1.2.3-r1.ebuild, -files/1.4.1-data-path.patch, - pymol-1.3.1_pre3925-r1.ebuild, -files/1.4.1-shaders.patch, - pymol-1.4.1.ebuild, -files/1.4-shaders.patch, - +files/pymol-1.2.2-data-path.patch, +files/pymol-1.4.1-data-path.patch, - -files/1.4-vmd.patch, +files/pymol-1.3.0-vmd.patch, - +files/pymol-1.4.1-shaders.patch, -files/1.4.1-web.patch, - +files/pymol-1.2.2-prefix.patch, +files/pymol-1.4.1-web.patch, - +files/pymol-1.4-shaders.patch, +files/pymol-1.4-vmd.patch, - pymol-1.5.0.1.ebuild, -files/pymol-1.5.0.1-nosplash.patch: - Rename all patches, add support for desktop icon, drop nosplash patch and add - launch option - -*pymol-1.5.0.1 (13 Feb 2012) - - 13 Feb 2012; Justin Lecher +pymol-1.5.0.1.ebuild, - +files/pymol-1.5.0.1-data-path.patch, +files/pymol-1.5.0.1-flags.patch, - +files/pymol-1.5.0.1-nosplash.patch, +files/pymol-1.5.0.1-prefix.patch, - +files/pymol-1.5.0.1-setup.py.patch, +files/pymol-1.5.0.1-vmd.patch, - +files/pymol-1.5.0.1-web.patch, metadata.xml: - Version Bump - - 02 Jun 2011; Justin Lecher +files/1.4.1-web.patch, - pymol-1.4.1.ebuild, metadata.xml: - Fix collision with dev-python/webpy, #368947 diff --git a/sci-chemistry/pymol/ChangeLog-2015 b/sci-chemistry/pymol/ChangeLog-2015 new file mode 100644 index 00000000..c80f2f89 --- /dev/null +++ b/sci-chemistry/pymol/ChangeLog-2015 @@ -0,0 +1,256 @@ +# ChangeLog for sci-chemistry/pymol +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.130 2015/05/26 14:05:52 jlec Exp $ + + 26 May 2015; Justin Lecher pymol-1.7.0.1.ebuild: + Move to virtual + +*pymol-1.7.6.0 (05 May 2015) + + 05 May 2015; Justin Lecher +pymol-1.7.6.0.ebuild: + Version Bump + + 16 Mar 2015; Justin Lecher pymol-1.7.0.1.ebuild, + pymol-1.7.4.0.ebuild: + Move to virtual/pmw + + 22 Jan 2015; Justin Lecher -pymol-1.5.0.3-r1.ebuild, + -pymol-1.5.0.3-r2.ebuild, -pymol-1.6.0_rc1.ebuild, -pymol-1.6.0.0.ebuild, + -pymol-1.6.0.0-r1.ebuild, -pymol-1.6.0.0-r2.ebuild, -pymol-1.7.0.0.ebuild, + -pymol-1.7.0.4.ebuild, -pymol-1.7.0.4-r1.ebuild, -pymol-1.7.1.1.ebuild, + -pymol-1.7.1.3.ebuild, -pymol-1.7.2.0.ebuild, -pymol-1.7.2.1.ebuild, + -pymol-1.7.3.0.ebuild, -pymol-1.7.3.1.ebuild, -pymol-1.7.3.2.ebuild, + -pymol-1.7.3.4.ebuild, -files/pymol-1.5.0.1-data-path.patch, + -files/pymol-1.5.0.1-flags.patch, -files/pymol-1.5.0.1-setup.py.patch, + -files/pymol-1.5.0.1-vmd.patch, -files/pymol-1.5.0.1-web.patch, + -files/pymol-1.5.0.3-prefix.patch, -files/pymol-1.5.0.3-web.patch, + -files/pymol-1.6.0.0-bg_rgb.patch, -files/pymol-1.6.0.0-labels.patch, + -files/pymol-1.6.0.0-stereo.patch, + -files/pymol-1.7.0.4-fix-broken-label-scaling-on-Linux.patch, + -files/pymol-9999-listing.patch, -files/1.2.1/nosplash-gentoo.patch, + -files/pymol-9999-options.patch, metadata.xml: + Drop old + + 22 Jan 2015; Sergey Popov pymol-1.5.0.3-r1.ebuild: + Drop to ~ppc, wrt bug #507142 + + 04 Dec 2014; Patrick Lauer pymol-1.7.4.0.ebuild: + Remove unneeded blank line on last line + +*pymol-1.7.4.0 (04 Dec 2014) + + 04 Dec 2014; Justin Lecher +pymol-1.7.4.0.ebuild: + Version Bump + +*pymol-1.7.3.4 (21 Nov 2014) + + 21 Nov 2014; Justin Lecher +pymol-1.7.3.4.ebuild: + Version Bump + + 27 Oct 2014; Justin Lecher pymol-1.7.3.2.ebuild: + Add missing PYTHON_USEDEP + +*pymol-1.7.3.2 (20 Oct 2014) + + 20 Oct 2014; Justin Lecher +pymol-1.7.3.2.ebuild, + +files/pymol-9999-listing.patch, +files/pymol-9999-options.patch: + Version Bump + +*pymol-1.7.3.1 (17 Oct 2014) + + 17 Oct 2014; Justin Lecher +pymol-1.7.3.1.ebuild, + +files/pymol-1.7.3.1-maeffplugin.cpp.patch: + Version Bump + +*pymol-1.7.3.0 (15 Sep 2014) + + 15 Sep 2014; Justin Lecher +pymol-1.7.3.0.ebuild: + Version Bump + +*pymol-1.7.2.1 (21 Aug 2014) + + 21 Aug 2014; Justin Lecher +pymol-1.7.2.1.ebuild: + Version Bump + + 13 Aug 2014; Andreas Schuerch pymol-1.7.0.1.ebuild: + x86 stable, see bug 507142 + +*pymol-1.7.2.0 (11 Aug 2014) + + 11 Aug 2014; Justin Lecher +pymol-1.7.2.0.ebuild: + Version Bump + + 10 Jul 2014; Chema Alonso pymol-1.7.0.1.ebuild: + Stable for amd64 wrt bug #507142 + +*pymol-1.7.1.3 (14 May 2014) + + 14 May 2014; Justin Lecher +pymol-1.7.1.3.ebuild: + Version Bump + + 01 May 2014; Justin Lecher pymol-1.5.0.3-r1.ebuild, + pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild, + pymol-1.6.0.0-r1.ebuild, pymol-1.6.0.0-r2.ebuild, pymol-1.7.0.0.ebuild, + pymol-1.7.0.1.ebuild, pymol-1.7.0.4.ebuild, pymol-1.7.0.4-r1.ebuild, + pymol-1.7.1.1.ebuild: + Drop unneeded dep + +*pymol-1.7.1.1 (08 Apr 2014) + + 08 Apr 2014; Justin Lecher +pymol-1.7.1.1.ebuild: + Version Bump + +*pymol-1.7.0.4-r1 (13 Mar 2014) + + 13 Mar 2014; Justin Lecher +pymol-1.7.0.4-r1.ebuild, + +files/pymol-1.7.0.4-fix-broken-label-scaling-on-Linux.patch: + Backport fix for broken labels + +*pymol-1.7.0.4 (10 Mar 2014) + + 10 Mar 2014; Justin Lecher +pymol-1.7.0.4.ebuild: + Version Bump + + 26 Jan 2014; Justin Lecher ChangeLog: + Update HOMEPAGE + +*pymol-1.7.0.1 (26 Jan 2014) + + 26 Jan 2014; Justin Lecher +pymol-1.7.0.1.ebuild: + Version Bump + + 26 Jan 2014; Justin Lecher pymol-1.5.0.3-r1.ebuild, + pymol-1.5.0.3-r2.ebuild, pymol-1.6.0_rc1.ebuild, pymol-1.6.0.0.ebuild, + pymol-1.6.0.0-r1.ebuild, pymol-1.6.0.0-r2.ebuild, pymol-1.7.0.0.ebuild: + Update HOMEPAGE + + 15 Jan 2014; Justin Lecher pymol-1.7.0.0.ebuild: + Supress unnecessary argparse import + +*pymol-1.7.0.0 (15 Jan 2014) + + 15 Jan 2014; Justin Lecher +pymol-1.7.0.0.ebuild: + Version Bump + +*pymol-1.6.0.0-r2 (16 Jul 2013) + + 16 Jul 2013; Justin Lecher +pymol-1.6.0.0-r2.ebuild, + +files/pymol-1.6.0.0-stereo.patch: + Backport fix for stereo flickering + +*pymol-1.6.0.0-r1 (18 Jun 2013) + + 18 Jun 2013; Justin Lecher +pymol-1.6.0.0-r1.ebuild, + +files/pymol-1.6.0.0-bg_rgb.patch, +files/pymol-1.6.0.0-labels.patch: + Add backports of upstream bugfixes + +*pymol-1.6.0.0 (12 Jun 2013) + + 12 Jun 2013; Justin Lecher +pymol-1.6.0.0.ebuild: + Version Bump + +*pymol-1.6.0_rc1 (25 Mar 2013) + + 25 Mar 2013; Justin Lecher pymol-1.5.0.3-r2.ebuild, + +pymol-1.6.0_rc1.ebuild: + Version Bump + + 19 Mar 2013; Justin Lecher pymol-1.5.0.3-r2.ebuild: + Prefix love + +*pymol-1.5.0.3-r2 (30 Jan 2013) + + 30 Jan 2013; Justin Lecher +pymol-1.5.0.3-r2.ebuild: + Move to new python eclasses, #453572 + + 22 Jan 2013; Justin Lecher pymol-1.5.0.3-r1.ebuild, + metadata.xml: + Fix SLOT for pmw + + 15 Oct 2012; Justin Lecher pymol-1.5.0.3-r1.ebuild: + Add mime type definition + + 06 Oct 2012; Justin Lecher + -files/pymol-0.99_rc10-data-path.patch, -files/pymol-1.2.2-data-path.patch, + -files/pymol-1.2.2-prefix.patch, -files/pymol-1.2.2-shaders.patch, + -files/pymol-1.2.2-vmd.patch, -files/pymol-1.3.0-vmd.patch, + -pymol-1.3.1_pre3925-r1.ebuild, -pymol-1.4.1.ebuild, + -files/pymol-1.4.1-data-path.patch, -files/pymol-1.4.1-shaders.patch, + -files/pymol-1.4.1-web.patch, -files/pymol-1.4-shaders.patch, + -files/pymol-1.4-vmd.patch, -pymol-1.5.0.1.ebuild, + -files/pymol-1.5.0.1-prefix.patch, -pymol-1.5.0.2.ebuild, + -pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild, metadata.xml: + Add fix for OSX prefix and keyword ~x64-macos ~x86-macos; #437324; Drop old + + 23 Sep 2012; Pawel Hajdan jr pymol-1.5.0.3-r1.ebuild: + x86 stable wrt bug #431120 + + 14 Aug 2012; Anthony G. Basile pymol-1.5.0.3-r1.ebuild: + Stable ppc, bug #431120 + + 14 Aug 2012; Agostino Sarubbo pymol-1.5.0.3-r1.ebuild: + Stable for amd64, wrt bug #431120 + + 14 Aug 2012; Justin Lecher pymol-1.5.0.3-r1.ebuild: + Add aditional messages for crashing shader support + + 12 Aug 2012; Justin Lecher pymol-1.5.0.1.ebuild, + pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild: + Correct Desktop entry + + 04 Jun 2012; Michael Weber pymol-1.3.1_pre3925-r1.ebuild: + ppc stable (bug 366229) + + 29 Mar 2012; Justin Lecher pymol-1.5.0.1.ebuild, + pymol-1.5.0.2.ebuild, pymol-1.5.0.3.ebuild, pymol-1.5.0.3-r1.ebuild: + Add new icon files provided by Ramiro Téllez Sanz + +*pymol-1.5.0.3-r1 (28 Mar 2012) + + 28 Mar 2012; Justin Lecher + files/pymol-1.5.0.1-data-path.patch, +pymol-1.5.0.3-r1.ebuild: + Add missing wrong usage of PYMOL_PATH, #409971 + +*pymol-1.5.0.3 (10 Mar 2012) + + 10 Mar 2012; Justin Lecher +pymol-1.5.0.3.ebuild, + +files/pymol-1.5.0.3-prefix.patch, +files/pymol-1.5.0.3-web.patch: + Version Bump + +*pymol-1.5.0.2 (27 Feb 2012) + + 27 Feb 2012; Justin Lecher pymol-1.5.0.1.ebuild, + +pymol-1.5.0.2.ebuild: + Version Bump + + 26 Feb 2012; Patrick Lauer pymol-1.3.1_pre3925-r1.ebuild, + pymol-1.4.1.ebuild, pymol-1.5.0.1.ebuild: + Restricting pypy and jython + + 14 Feb 2012; Justin Lecher -files/1.2.2-data-path.patch, + -files/1.2.1/pymol-1.2.1-data-path.patch, -files/1.2.2-prefix.patch, + -files/1.2.1/pymol-1.2.1-shaders.patch, -files/1.3.0-vmd.patch, + -pymol-1.2.3-r1.ebuild, -files/1.4.1-data-path.patch, + pymol-1.3.1_pre3925-r1.ebuild, -files/1.4.1-shaders.patch, + pymol-1.4.1.ebuild, -files/1.4-shaders.patch, + +files/pymol-1.2.2-data-path.patch, +files/pymol-1.4.1-data-path.patch, + -files/1.4-vmd.patch, +files/pymol-1.3.0-vmd.patch, + +files/pymol-1.4.1-shaders.patch, -files/1.4.1-web.patch, + +files/pymol-1.2.2-prefix.patch, +files/pymol-1.4.1-web.patch, + +files/pymol-1.4-shaders.patch, +files/pymol-1.4-vmd.patch, + pymol-1.5.0.1.ebuild, -files/pymol-1.5.0.1-nosplash.patch: + Rename all patches, add support for desktop icon, drop nosplash patch and add + launch option + +*pymol-1.5.0.1 (13 Feb 2012) + + 13 Feb 2012; Justin Lecher +pymol-1.5.0.1.ebuild, + +files/pymol-1.5.0.1-data-path.patch, +files/pymol-1.5.0.1-flags.patch, + +files/pymol-1.5.0.1-nosplash.patch, +files/pymol-1.5.0.1-prefix.patch, + +files/pymol-1.5.0.1-setup.py.patch, +files/pymol-1.5.0.1-vmd.patch, + +files/pymol-1.5.0.1-web.patch, metadata.xml: + Version Bump + + 02 Jun 2011; Justin Lecher +files/1.4.1-web.patch, + pymol-1.4.1.ebuild, metadata.xml: + Fix collision with dev-python/webpy, #368947 diff --git a/sci-chemistry/rasmol/ChangeLog b/sci-chemistry/rasmol/ChangeLog deleted file mode 100644 index 2a114fb5..00000000 --- a/sci-chemistry/rasmol/ChangeLog +++ /dev/null @@ -1,235 +0,0 @@ -# ChangeLog for sci-chemistry/rasmol -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/rasmol/ChangeLog,v 1.46 2015/06/17 14:39:33 jlec Exp $ - - 17 Jun 2015; Justin Lecher -rasmol-2.7.5.2-r1.ebuild, - rasmol-2.7.5.2-r2.ebuild: - Fix compilation problems on ppc, bug #547318; drop old - -*rasmol-2.7.5.2-r2 (18 May 2015) - - 18 May 2015; Justin Lecher +rasmol-2.7.5.2-r2.ebuild: - Drop -traditional from CPPFLAGS, bug #547318; enhance preprocessor definitions - - 29 Mar 2015; Justin Lecher -files/ldflags.patch, - -files/rasmol.sh.debian, -rasmol-2.7.5.2.ebuild: - Drop old - - 28 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: - Stable for ppc, wrt bug #543036 - - 25 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: - Stable for x86, wrt bug #543036 - - 24 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: - Stable for amd64, wrt bug #543036 - -*rasmol-2.7.5.2-r1 (12 Mar 2015) - - 12 Mar 2015; Justin Lecher - +files/rasmol-2.7.5.2-format-security.patch, - +files/rasmol-2.7.5.2-longlong.patch, +rasmol-2.7.5.2-r1.ebuild: - Fix for format-security, #543032 - - 20 Dec 2012; Justin Lecher -rasmol-2.7.5.1.ebuild, - metadata.xml: - Drop old version; fixes 438428 - - 20 Dec 2012; Andreas Schuerch rasmol-2.7.5.2.ebuild: - x86 stable, see bug 438498 - - 19 Nov 2012; Justin Lecher rasmol-2.7.5.2.ebuild: - Add missing dep - - 11 Nov 2012; Anthony G. Basile rasmol-2.7.5.2.ebuild: - stable ppc, bug #438498 - - 31 Oct 2012; Agostino Sarubbo rasmol-2.7.5.2.ebuild: - Stable for amd64, wrt bug #438498 - - 19 Oct 2012; Justin Lecher rasmol-2.7.5.1.ebuild, - rasmol-2.7.5.2.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 25 Apr 2012; Justin Lecher rasmol-2.7.5.2.ebuild, - +files/rasmol-2.7.5.2-glib.h.patch: - Add fix for >glib-2.32 - - 08 Mar 2012; Justin Lecher -rasmol-2.7.2.1.1-r1.ebuild, - -rasmol-2.7.5-r1.ebuild: - Dropped old - - 07 Mar 2012; Brent Baude rasmol-2.7.5.1.ebuild: - Marking rasmol-2.7.5.1 ppc for bug 394085 - - 26 Dec 2011; Markus Meier rasmol-2.7.5.1.ebuild: - x86 stable, bug #394085 - - 15 Dec 2011; Justin Lecher rasmol-2.7.5.1.ebuild, - rasmol-2.7.5.2.ebuild: - Add die after external commands - - 14 Dec 2011; Agostino Sarubbo rasmol-2.7.5.1.ebuild: - Stable for AMD64, wrt bug #394085 - -*rasmol-2.7.5.2 (14 Dec 2011) - - 14 Dec 2011; Justin Lecher +rasmol-2.7.5.2.ebuild: - Version Bump - - 01 Jul 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, - rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild, metadata.xml: - Cleaned ebuild, EAPI=4 bump - - 21 Jun 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, - rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, - rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild: - Added fortran-2.eclass support - -*rasmol-2.7.5.1 (15 Apr 2011) - - 15 Apr 2011; Justin Lecher +rasmol-2.7.5.1.ebuild: - Version Bump - - 07 Mar 2011; Justin Lecher rasmol-2.7.5-r1.ebuild: - Correct Slots for gtk 3 introduction to tree - - 25 Jan 2011; Christian Faulhammer - rasmol-2.7.5-r1.ebuild: - stable x86, bug 351984 - - 23 Jan 2011; Kacper Kowalik - rasmol-2.7.5-r1.ebuild: - Mark ~ppc wrt #303393 - - 19 Jan 2011; Justin Lecher +rasmol-2.7.2.1.1-r1.ebuild: - Reverted removal of rasmol-2.7.2.1.1-r1.ebuild - - 18 Jan 2011; Markos Chandras rasmol-2.7.5-r1.ebuild: - Stable on amd64 wrt bug #351984 - - 18 Jan 2011; Justin Lecher -rasmol-2.7.2.1.1-r1.ebuild: - Removed old - -*rasmol-2.7.5-r1 (31 Mar 2010) - - 31 Mar 2010; Justin Lecher - files/2.7.5-bundled-lib.patch, -rasmol-2.7.5.ebuild, - +rasmol-2.7.5-r1.ebuild: - Removed unneeded patch for ldflags, removed unneeded linking against - libforms, #312369 - - - 07 Mar 2010; Justin Lecher (jlec) - files/2.7.5-bundled-lib.patch, rasmol-2.7.5.ebuild: - Prefix cleaning, keyworded for *-linux, tested by me - -*rasmol-2.7.5 (03 Feb 2010) - - 03 Feb 2010; Justin Lecher (jlec) - +files/2.7.5-bundled-lib.patch, rasmol-2.7.2.1.1-r1.ebuild, - +rasmol-2.7.5.ebuild, +files/ldflags.patch: - Version Bump - Only providing 32bit colordepth gtk interface now - - 22 Jul 2007; Donnie Berkholz ; - rasmol-2.7.2.1.1-r1.ebuild: - Drop virtual/x11 references. - - 07 Jan 2007; Danny van Dyk - -rasmol-2.7.2.1.1.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 09 Jul 2006; Donnie Berkholz ; - rasmol-2.7.2.1.1-r1.ebuild: - x86/ppc stable. - - 24 Apr 2006; Donnie Berkholz ; - rasmol-2.7.2.1.1-r1.ebuild: - Keyword ~ppc. - - 14 Mar 2006; George Shapovalov - rasmol-2.7.2.1.1-r1.ebuild: - added x11-misc/imake to DEPEND as building the package requires xmkmf - -*rasmol-2.7.2.1.1-r1 (15 Dec 2005) - - 15 Dec 2005; Donnie Berkholz ; - files/rasmol.sh.debian, +rasmol-2.7.2.1.1-r1.ebuild: - Update rasmol script to fall back to xdpyinfo if xwininfo isn't available. - Depend on one of the two. - - 15 Dec 2005; Donnie Berkholz ; - rasmol-2.7.2.1.1.ebuild: - (#115649) Add rman to modular X deps. - - 15 Dec 2005; Donnie Berkholz ; - rasmol-2.7.2.1.1.ebuild: - Add modular X dependencies. - - 02 Jan 2005; Olivier Fisette -rasmol-2.7.1.1.ebuild, - rasmol-2.7.2.1.1.ebuild: - Removed obsolete version. Use toolchain-funcs rather than gcc eclass. - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +files/rasmol.sh.debian, +rasmol-2.7.1.1.ebuild, +rasmol-2.7.2.1.1.ebuild: - Moved from app-sci/rasmol to sci-chemistry/rasmol. - - 27 Jul 2004; Donnie Berkholz ; - rasmol-2.7.2.1.1.ebuild: - x86. Considered "production release" upstream now. - - 26 Jul 2004; Danny van Dyk rasmol-2.7.2.1.1.ebuild: - Marked ~amd64. - - 19 Apr 2004; Patrick Kursawe rasmol-2.7.1.1.ebuild, - rasmol-2.7.2.1.1.ebuild: - Adding IUSE - - 01 Apr 2004; Donnie Berkholz ; - rasmol-2.6_beta2.ebuild, rasmol-2.7.1.1.ebuild: - Keyword 2.7.1.1 x86, drop old version. - - 01 Apr 2004; Donnie Berkholz ; rasmol-2.7.2.1.ebuild: - Drop old version, also closes #45706. - -*rasmol-2.7.2.1.1 (01 Apr 2004) - - 01 Apr 2004; Patrick Kursawe rasmol-2.7.2.1.1.ebuild, - rasmol-2.7.2.1.ebuild: - Version bump - -*rasmol-2.7.2.1 (01 Mar 2004) - - 01 Mar 2004; Donnie Berkholz ; rasmol-2.7.2.1.ebuild: - Adding beta version. This should stay ~arch until considered stable upstream. - -*rasmol-2.7.1.1 (01 Mar 2004) - - 01 Mar 2004; Donnie Berkholz ; rasmol-2.7.1.1.ebuild, - files/rasmol.sh.debian: - Version bump to 2.7 series, technically OpenRasMol but it's the continuation - of RasMol development. - - 09 Oct 2003; Brandy Westcott brandy@gentoo.org rasmol-2.6_beta2.ebuild: - Fixed applying of patch. Closes Bug #30730 - - 03 Oct 2003; Donnie Berkholz ; - rasmol-2.6_beta2.ebuild: - Basic cleanup. Removed hard-coded gcc, cleaner SRC_URI and src_unpack. - -*rasmol-2.6_beta2 (01 Jul 2002) - - 25 Jul 2002; Daniel Ahlberg rasmol-2.6_beta2.ebuild : - Added LICENSE, KEYWORDS, SLOT. - - 01 Jul 2002; Grant Goodyear ChangeLog : - - new package diff --git a/sci-chemistry/rasmol/ChangeLog-2015 b/sci-chemistry/rasmol/ChangeLog-2015 new file mode 100644 index 00000000..2a114fb5 --- /dev/null +++ b/sci-chemistry/rasmol/ChangeLog-2015 @@ -0,0 +1,235 @@ +# ChangeLog for sci-chemistry/rasmol +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/rasmol/ChangeLog,v 1.46 2015/06/17 14:39:33 jlec Exp $ + + 17 Jun 2015; Justin Lecher -rasmol-2.7.5.2-r1.ebuild, + rasmol-2.7.5.2-r2.ebuild: + Fix compilation problems on ppc, bug #547318; drop old + +*rasmol-2.7.5.2-r2 (18 May 2015) + + 18 May 2015; Justin Lecher +rasmol-2.7.5.2-r2.ebuild: + Drop -traditional from CPPFLAGS, bug #547318; enhance preprocessor definitions + + 29 Mar 2015; Justin Lecher -files/ldflags.patch, + -files/rasmol.sh.debian, -rasmol-2.7.5.2.ebuild: + Drop old + + 28 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: + Stable for ppc, wrt bug #543036 + + 25 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: + Stable for x86, wrt bug #543036 + + 24 Mar 2015; Agostino Sarubbo rasmol-2.7.5.2-r1.ebuild: + Stable for amd64, wrt bug #543036 + +*rasmol-2.7.5.2-r1 (12 Mar 2015) + + 12 Mar 2015; Justin Lecher + +files/rasmol-2.7.5.2-format-security.patch, + +files/rasmol-2.7.5.2-longlong.patch, +rasmol-2.7.5.2-r1.ebuild: + Fix for format-security, #543032 + + 20 Dec 2012; Justin Lecher -rasmol-2.7.5.1.ebuild, + metadata.xml: + Drop old version; fixes 438428 + + 20 Dec 2012; Andreas Schuerch rasmol-2.7.5.2.ebuild: + x86 stable, see bug 438498 + + 19 Nov 2012; Justin Lecher rasmol-2.7.5.2.ebuild: + Add missing dep + + 11 Nov 2012; Anthony G. Basile rasmol-2.7.5.2.ebuild: + stable ppc, bug #438498 + + 31 Oct 2012; Agostino Sarubbo rasmol-2.7.5.2.ebuild: + Stable for amd64, wrt bug #438498 + + 19 Oct 2012; Justin Lecher rasmol-2.7.5.1.ebuild, + rasmol-2.7.5.2.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 25 Apr 2012; Justin Lecher rasmol-2.7.5.2.ebuild, + +files/rasmol-2.7.5.2-glib.h.patch: + Add fix for >glib-2.32 + + 08 Mar 2012; Justin Lecher -rasmol-2.7.2.1.1-r1.ebuild, + -rasmol-2.7.5-r1.ebuild: + Dropped old + + 07 Mar 2012; Brent Baude rasmol-2.7.5.1.ebuild: + Marking rasmol-2.7.5.1 ppc for bug 394085 + + 26 Dec 2011; Markus Meier rasmol-2.7.5.1.ebuild: + x86 stable, bug #394085 + + 15 Dec 2011; Justin Lecher rasmol-2.7.5.1.ebuild, + rasmol-2.7.5.2.ebuild: + Add die after external commands + + 14 Dec 2011; Agostino Sarubbo rasmol-2.7.5.1.ebuild: + Stable for AMD64, wrt bug #394085 + +*rasmol-2.7.5.2 (14 Dec 2011) + + 14 Dec 2011; Justin Lecher +rasmol-2.7.5.2.ebuild: + Version Bump + + 01 Jul 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, + rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild, metadata.xml: + Cleaned ebuild, EAPI=4 bump + + 21 Jun 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, + rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher rasmol-2.7.2.1.1-r1.ebuild, + rasmol-2.7.5-r1.ebuild, rasmol-2.7.5.1.ebuild: + Added fortran-2.eclass support + +*rasmol-2.7.5.1 (15 Apr 2011) + + 15 Apr 2011; Justin Lecher +rasmol-2.7.5.1.ebuild: + Version Bump + + 07 Mar 2011; Justin Lecher rasmol-2.7.5-r1.ebuild: + Correct Slots for gtk 3 introduction to tree + + 25 Jan 2011; Christian Faulhammer + rasmol-2.7.5-r1.ebuild: + stable x86, bug 351984 + + 23 Jan 2011; Kacper Kowalik + rasmol-2.7.5-r1.ebuild: + Mark ~ppc wrt #303393 + + 19 Jan 2011; Justin Lecher +rasmol-2.7.2.1.1-r1.ebuild: + Reverted removal of rasmol-2.7.2.1.1-r1.ebuild + + 18 Jan 2011; Markos Chandras rasmol-2.7.5-r1.ebuild: + Stable on amd64 wrt bug #351984 + + 18 Jan 2011; Justin Lecher -rasmol-2.7.2.1.1-r1.ebuild: + Removed old + +*rasmol-2.7.5-r1 (31 Mar 2010) + + 31 Mar 2010; Justin Lecher + files/2.7.5-bundled-lib.patch, -rasmol-2.7.5.ebuild, + +rasmol-2.7.5-r1.ebuild: + Removed unneeded patch for ldflags, removed unneeded linking against + libforms, #312369 + + + 07 Mar 2010; Justin Lecher (jlec) + files/2.7.5-bundled-lib.patch, rasmol-2.7.5.ebuild: + Prefix cleaning, keyworded for *-linux, tested by me + +*rasmol-2.7.5 (03 Feb 2010) + + 03 Feb 2010; Justin Lecher (jlec) + +files/2.7.5-bundled-lib.patch, rasmol-2.7.2.1.1-r1.ebuild, + +rasmol-2.7.5.ebuild, +files/ldflags.patch: + Version Bump + Only providing 32bit colordepth gtk interface now + + 22 Jul 2007; Donnie Berkholz ; + rasmol-2.7.2.1.1-r1.ebuild: + Drop virtual/x11 references. + + 07 Jan 2007; Danny van Dyk + -rasmol-2.7.2.1.1.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 09 Jul 2006; Donnie Berkholz ; + rasmol-2.7.2.1.1-r1.ebuild: + x86/ppc stable. + + 24 Apr 2006; Donnie Berkholz ; + rasmol-2.7.2.1.1-r1.ebuild: + Keyword ~ppc. + + 14 Mar 2006; George Shapovalov + rasmol-2.7.2.1.1-r1.ebuild: + added x11-misc/imake to DEPEND as building the package requires xmkmf + +*rasmol-2.7.2.1.1-r1 (15 Dec 2005) + + 15 Dec 2005; Donnie Berkholz ; + files/rasmol.sh.debian, +rasmol-2.7.2.1.1-r1.ebuild: + Update rasmol script to fall back to xdpyinfo if xwininfo isn't available. + Depend on one of the two. + + 15 Dec 2005; Donnie Berkholz ; + rasmol-2.7.2.1.1.ebuild: + (#115649) Add rman to modular X deps. + + 15 Dec 2005; Donnie Berkholz ; + rasmol-2.7.2.1.1.ebuild: + Add modular X dependencies. + + 02 Jan 2005; Olivier Fisette -rasmol-2.7.1.1.ebuild, + rasmol-2.7.2.1.1.ebuild: + Removed obsolete version. Use toolchain-funcs rather than gcc eclass. + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +files/rasmol.sh.debian, +rasmol-2.7.1.1.ebuild, +rasmol-2.7.2.1.1.ebuild: + Moved from app-sci/rasmol to sci-chemistry/rasmol. + + 27 Jul 2004; Donnie Berkholz ; + rasmol-2.7.2.1.1.ebuild: + x86. Considered "production release" upstream now. + + 26 Jul 2004; Danny van Dyk rasmol-2.7.2.1.1.ebuild: + Marked ~amd64. + + 19 Apr 2004; Patrick Kursawe rasmol-2.7.1.1.ebuild, + rasmol-2.7.2.1.1.ebuild: + Adding IUSE + + 01 Apr 2004; Donnie Berkholz ; + rasmol-2.6_beta2.ebuild, rasmol-2.7.1.1.ebuild: + Keyword 2.7.1.1 x86, drop old version. + + 01 Apr 2004; Donnie Berkholz ; rasmol-2.7.2.1.ebuild: + Drop old version, also closes #45706. + +*rasmol-2.7.2.1.1 (01 Apr 2004) + + 01 Apr 2004; Patrick Kursawe rasmol-2.7.2.1.1.ebuild, + rasmol-2.7.2.1.ebuild: + Version bump + +*rasmol-2.7.2.1 (01 Mar 2004) + + 01 Mar 2004; Donnie Berkholz ; rasmol-2.7.2.1.ebuild: + Adding beta version. This should stay ~arch until considered stable upstream. + +*rasmol-2.7.1.1 (01 Mar 2004) + + 01 Mar 2004; Donnie Berkholz ; rasmol-2.7.1.1.ebuild, + files/rasmol.sh.debian: + Version bump to 2.7 series, technically OpenRasMol but it's the continuation + of RasMol development. + + 09 Oct 2003; Brandy Westcott brandy@gentoo.org rasmol-2.6_beta2.ebuild: + Fixed applying of patch. Closes Bug #30730 + + 03 Oct 2003; Donnie Berkholz ; + rasmol-2.6_beta2.ebuild: + Basic cleanup. Removed hard-coded gcc, cleaner SRC_URI and src_unpack. + +*rasmol-2.6_beta2 (01 Jul 2002) + + 25 Jul 2002; Daniel Ahlberg rasmol-2.6_beta2.ebuild : + Added LICENSE, KEYWORDS, SLOT. + + 01 Jul 2002; Grant Goodyear ChangeLog : + + new package diff --git a/sci-chemistry/raster3d/ChangeLog b/sci-chemistry/raster3d/ChangeLog deleted file mode 100644 index cc71425d..00000000 --- a/sci-chemistry/raster3d/ChangeLog +++ /dev/null @@ -1,160 +0,0 @@ -# ChangeLog for sci-chemistry/raster3d -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/raster3d/ChangeLog,v 1.36 2015/04/07 14:38:49 jlec Exp $ - -*raster3d-3.0.3 (24 Jul 2014) - - 24 Jul 2014; Justin Lecher +raster3d-3.0.3.ebuild, - metadata.xml: - Version Bump - - 14 Dec 2012; Ulrich Müller raster3d-3.0.2.ebuild: - Fix LICENSE, Artistic License, Version 2.0 according to HOMEPAGE. - - 19 Oct 2012; Justin Lecher raster3d-3.0.2.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 08 Mar 2012; Justin Lecher -raster3d-2.7c.ebuild, - -raster3d-2.9.2.ebuild: - Dropped old, fixes #384863 - - 07 Mar 2012; Brent Baude raster3d-3.0.2.ebuild: - Marking raster3d-3.0.2 ppc for bug 385627 - - 16 Nov 2011; Justin Lecher raster3d-2.7c.ebuild, - raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild, metadata.xml: - Corrected Slotting of media-libs/libpng and media-libs/tiff - - 09 Oct 2011; Markos Chandras raster3d-3.0.2.ebuild: - Stable on amd64 wrt bug #385627 - - 08 Oct 2011; Pawel Hajdan jr raster3d-3.0.2.ebuild: - x86 stable wrt bug #385627 - - 21 Jun 2011; Justin Lecher raster3d-2.7c.ebuild, - raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher raster3d-2.7c.ebuild, - raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild: - Added fortran-2.eclass support - - 14 Mar 2011; Justin Lecher raster3d-3.0.2.ebuild: - Fix for parallel build, #358555 - - 06 Mar 2011; Justin Lecher files/3.0.2-as-needed.patch: - Prll compilation fix - -*raster3d-3.0.2 (27 Feb 2011) - - 27 Feb 2011; Justin Lecher +files/3.0.2-as-needed.patch, - +files/3.0.2-gentoo-prefix.patch, raster3d-2.7c.ebuild, - +raster3d-3.0.2.ebuild, metadata.xml: - Version Bump - - 17 Dec 2010; Justin Lecher raster3d-2.9.2.ebuild: - Fix for fortran.eclass removal - - 16 Dec 2010; Justin Lecher raster3d-2.7c.ebuild, - raster3d-2.9.2.ebuild: - Removal of fortran.eclass, #348851 - - 08 Nov 2010; Kacper Kowalik raster3d-2.7c.ebuild, - -raster3d-2.7d.ebuild, -files/raster3d-2.7d-gcc4-gentoo.patch, - -raster3d-2.7s.ebuild, -raster3d-2.9.1.ebuild, raster3d-2.9.2.ebuild: - media-libs/jpeg -> virtual/jpeg. Drop old. - -*raster3d-2.9.2 (02 Apr 2010) - - 02 Apr 2010; Justin Lecher +raster3d-2.9.2.ebuild: - Version Bump - - 01 Apr 2010; Justin Lecher raster3d-2.9.1.ebuild: - Fixed Prefix support, #312117 - -*raster3d-2.9.1 (28 Mar 2010) - - 28 Mar 2010; Justin Lecher (jlec) - +files/2.9.1-as-needed.patch, +raster3d-2.9.1.ebuild, metadata.xml: - Version Bump, keyworded for ~*-linux, as-needed aware linking, removed - uneeded imake DEPEND - - 16 Oct 2008; Markus Dittrich raster3d-2.7s.ebuild, raster3d-2.7d.ebuild: - Added -ffixed-line-length-132 to FFLAGS to avoid gcc-4.1.2 errors - due to lines extending beyond 72 characters (fixes bug #242232). - - 08 Jul 2008; Donnie Berkholz ; raster3d-2.7s.ebuild: - Keyword ~amd64. - -*raster3d-2.7s (08 Jul 2008) - - 08 Jul 2008; Donnie Berkholz ; - +raster3d-2.7s.ebuild: - (#231118) Bump. Small cleanup of make->emake so MAKEOPTS are respected. - -*raster3d-2.7d (08 Sep 2007) - - 08 Sep 2007; Markus Dittrich - +files/raster3d-2.7d-gcc4-gentoo.patch, - files/raster3d-gcc-4.1-gentoo.patch, +raster3d-2.7d.ebuild: - Fixed gcc patch to work with gcc-4.2 and bumped raster3d to new - version (see bug #190511). - - 22 Jul 2007; Donnie Berkholz ; raster3d-2.7c.ebuild: - Drop virtual/x11 references. - - 07 Jan 2007; Danny van Dyk -raster3d-2.6e.ebuild: - QA: Removed unused versions. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 07 Aug 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: - (#141425) Stable on x86/ppc. - - 21 May 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: - Keyword ~ppc. - - 27 Apr 2006; Alec Warner files/digest-raster3d-2.6e, - Manifest: - Fixing SHA256 digest, pass four - - 12 Apr 2006; Markus Dittrich - +files/raster3d-gcc-4.1-gentoo.patch, raster3d-2.7c.ebuild: - Applied patch to fix compile problems using gcc-4.1. Thanks to - Patrizio Bassi for testing. This fixes - bug #125190. - - 11 Apr 2006; Markus Dittrich raster3d-2.6e.ebuild, - raster3d-2.7c.ebuild: - Added missing x11-misc/imake to DEPEND. This fixes bug #128747. - Also moved raster3d-2.6e to modular X. - - 18 Jan 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: - Fix dependencies for modular X. - -*raster3d-2.7c (20 Oct 2005) - - 20 Oct 2005; Olivier Fisette +raster3d-2.7c.ebuild: - New version. - -*raster3d-2.6e (24 Dec 2004) - - 24 Dec 2004; Olivier Fisette +metadata.xml, - +raster3d-2.6e.ebuild: - Moved from app-sci/raster3d to sci-chemistry/raster3d. - - 19 Apr 2004; Patrick Kursawe raster3d-2.6e.ebuild: - Adding IUSE - -*raster3d-2.6e (01 Nov 2002) - - 01 Nov 2002; George Shapovalov raster3d-2.6e.ebuild : - - first commit - Raster3D is a set of tools for - generating high quality raster images of proteins or other molecules. The - homepage is at http://www.bmsc.washington.edu/raster3d/raster3d.html. - - ebuild submitted by Jianghai Zhu diff --git a/sci-chemistry/raster3d/ChangeLog-2015 b/sci-chemistry/raster3d/ChangeLog-2015 new file mode 100644 index 00000000..cc71425d --- /dev/null +++ b/sci-chemistry/raster3d/ChangeLog-2015 @@ -0,0 +1,160 @@ +# ChangeLog for sci-chemistry/raster3d +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/raster3d/ChangeLog,v 1.36 2015/04/07 14:38:49 jlec Exp $ + +*raster3d-3.0.3 (24 Jul 2014) + + 24 Jul 2014; Justin Lecher +raster3d-3.0.3.ebuild, + metadata.xml: + Version Bump + + 14 Dec 2012; Ulrich Müller raster3d-3.0.2.ebuild: + Fix LICENSE, Artistic License, Version 2.0 according to HOMEPAGE. + + 19 Oct 2012; Justin Lecher raster3d-3.0.2.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 08 Mar 2012; Justin Lecher -raster3d-2.7c.ebuild, + -raster3d-2.9.2.ebuild: + Dropped old, fixes #384863 + + 07 Mar 2012; Brent Baude raster3d-3.0.2.ebuild: + Marking raster3d-3.0.2 ppc for bug 385627 + + 16 Nov 2011; Justin Lecher raster3d-2.7c.ebuild, + raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild, metadata.xml: + Corrected Slotting of media-libs/libpng and media-libs/tiff + + 09 Oct 2011; Markos Chandras raster3d-3.0.2.ebuild: + Stable on amd64 wrt bug #385627 + + 08 Oct 2011; Pawel Hajdan jr raster3d-3.0.2.ebuild: + x86 stable wrt bug #385627 + + 21 Jun 2011; Justin Lecher raster3d-2.7c.ebuild, + raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher raster3d-2.7c.ebuild, + raster3d-2.9.2.ebuild, raster3d-3.0.2.ebuild: + Added fortran-2.eclass support + + 14 Mar 2011; Justin Lecher raster3d-3.0.2.ebuild: + Fix for parallel build, #358555 + + 06 Mar 2011; Justin Lecher files/3.0.2-as-needed.patch: + Prll compilation fix + +*raster3d-3.0.2 (27 Feb 2011) + + 27 Feb 2011; Justin Lecher +files/3.0.2-as-needed.patch, + +files/3.0.2-gentoo-prefix.patch, raster3d-2.7c.ebuild, + +raster3d-3.0.2.ebuild, metadata.xml: + Version Bump + + 17 Dec 2010; Justin Lecher raster3d-2.9.2.ebuild: + Fix for fortran.eclass removal + + 16 Dec 2010; Justin Lecher raster3d-2.7c.ebuild, + raster3d-2.9.2.ebuild: + Removal of fortran.eclass, #348851 + + 08 Nov 2010; Kacper Kowalik raster3d-2.7c.ebuild, + -raster3d-2.7d.ebuild, -files/raster3d-2.7d-gcc4-gentoo.patch, + -raster3d-2.7s.ebuild, -raster3d-2.9.1.ebuild, raster3d-2.9.2.ebuild: + media-libs/jpeg -> virtual/jpeg. Drop old. + +*raster3d-2.9.2 (02 Apr 2010) + + 02 Apr 2010; Justin Lecher +raster3d-2.9.2.ebuild: + Version Bump + + 01 Apr 2010; Justin Lecher raster3d-2.9.1.ebuild: + Fixed Prefix support, #312117 + +*raster3d-2.9.1 (28 Mar 2010) + + 28 Mar 2010; Justin Lecher (jlec) + +files/2.9.1-as-needed.patch, +raster3d-2.9.1.ebuild, metadata.xml: + Version Bump, keyworded for ~*-linux, as-needed aware linking, removed + uneeded imake DEPEND + + 16 Oct 2008; Markus Dittrich raster3d-2.7s.ebuild, raster3d-2.7d.ebuild: + Added -ffixed-line-length-132 to FFLAGS to avoid gcc-4.1.2 errors + due to lines extending beyond 72 characters (fixes bug #242232). + + 08 Jul 2008; Donnie Berkholz ; raster3d-2.7s.ebuild: + Keyword ~amd64. + +*raster3d-2.7s (08 Jul 2008) + + 08 Jul 2008; Donnie Berkholz ; + +raster3d-2.7s.ebuild: + (#231118) Bump. Small cleanup of make->emake so MAKEOPTS are respected. + +*raster3d-2.7d (08 Sep 2007) + + 08 Sep 2007; Markus Dittrich + +files/raster3d-2.7d-gcc4-gentoo.patch, + files/raster3d-gcc-4.1-gentoo.patch, +raster3d-2.7d.ebuild: + Fixed gcc patch to work with gcc-4.2 and bumped raster3d to new + version (see bug #190511). + + 22 Jul 2007; Donnie Berkholz ; raster3d-2.7c.ebuild: + Drop virtual/x11 references. + + 07 Jan 2007; Danny van Dyk -raster3d-2.6e.ebuild: + QA: Removed unused versions. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 07 Aug 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: + (#141425) Stable on x86/ppc. + + 21 May 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: + Keyword ~ppc. + + 27 Apr 2006; Alec Warner files/digest-raster3d-2.6e, + Manifest: + Fixing SHA256 digest, pass four + + 12 Apr 2006; Markus Dittrich + +files/raster3d-gcc-4.1-gentoo.patch, raster3d-2.7c.ebuild: + Applied patch to fix compile problems using gcc-4.1. Thanks to + Patrizio Bassi for testing. This fixes + bug #125190. + + 11 Apr 2006; Markus Dittrich raster3d-2.6e.ebuild, + raster3d-2.7c.ebuild: + Added missing x11-misc/imake to DEPEND. This fixes bug #128747. + Also moved raster3d-2.6e to modular X. + + 18 Jan 2006; Donnie Berkholz ; raster3d-2.7c.ebuild: + Fix dependencies for modular X. + +*raster3d-2.7c (20 Oct 2005) + + 20 Oct 2005; Olivier Fisette +raster3d-2.7c.ebuild: + New version. + +*raster3d-2.6e (24 Dec 2004) + + 24 Dec 2004; Olivier Fisette +metadata.xml, + +raster3d-2.6e.ebuild: + Moved from app-sci/raster3d to sci-chemistry/raster3d. + + 19 Apr 2004; Patrick Kursawe raster3d-2.6e.ebuild: + Adding IUSE + +*raster3d-2.6e (01 Nov 2002) + + 01 Nov 2002; George Shapovalov raster3d-2.6e.ebuild : + + first commit + Raster3D is a set of tools for + generating high quality raster images of proteins or other molecules. The + homepage is at http://www.bmsc.washington.edu/raster3d/raster3d.html. + + ebuild submitted by Jianghai Zhu diff --git a/sci-chemistry/reduce/ChangeLog b/sci-chemistry/reduce/ChangeLog deleted file mode 100644 index 32182040..00000000 --- a/sci-chemistry/reduce/ChangeLog +++ /dev/null @@ -1,100 +0,0 @@ -# ChangeLog for sci-chemistry/reduce -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.22 2015/04/07 14:38:58 jlec Exp $ - -*reduce-3.16.111118 (07 Dec 2012) - - 07 Dec 2012; Justin Lecher +reduce-3.16.111118.ebuild, - metadata.xml: - Version Bump - - 28 May 2011; Brent Baude reduce-3.13.080428-r1.ebuild: - Marking reduce-3.13.080428-r1 ppc for bug 325999 - -*reduce-3.14.080821 (03 May 2011) - - 03 May 2011; Justin Lecher +files/3.14.080821-CFLAGS.patch, - reduce-3.13.080428-r1.ebuild, +reduce-3.14.080821.ebuild: - Version Bump, notified by euscan - - 20 Sep 2010; Justin Lecher - -files/2.21.030604-gcc4.patch, - -files/3.02.060709-remove-extra-qualification.patch, - +files/3.13.080428-CFLAGS.patch, reduce-3.13.080428-r1.ebuild: - Respect CFLAGS, removed old patches - - 15 Jul 2010; Markus Meier - reduce-3.13.080428-r1.ebuild: - x86 stable, bug #325999 - - 14 Jul 2010; Justin Lecher reduce-3.13.080428-r1.ebuild: - You should not use EPREFIX with helpers - - 28 Jun 2010; Christoph Mende - reduce-3.13.080428-r1.ebuild: - Stable on amd64 wrt bug #325999 - - 22 Apr 2010; Justin Lecher reduce-3.13.080428-r1.ebuild: - Keyworded for ~*-linux - -*reduce-3.13.080428-r1 (05 Feb 2010) - - 05 Feb 2010; Justin Lecher (jlec) - +files/3.13.080428-LDFLAGS.patch, -reduce-2.21.030604.ebuild, - -reduce-3.02.060709.ebuild, +reduce-3.13.080428-r1.ebuild: - Clean old versions, fix for 280857 & 280858 - - 29 May 2009; Donnie Berkholz ; - reduce-3.13.080428.ebuild: - Stable on amd64. - -*reduce-3.13.080428 (07 Jul 2008) - - 07 Jul 2008; Donnie Berkholz ; - +reduce-3.13.080428.ebuild: - (#230693) Bump. Keyword ~amd64. Thanks to Philipp Psurek for doing the - initial investigation on what changes happened. - - 23 Oct 2006; Donnie Berkholz ; - reduce-2.21.030604.ebuild, reduce-3.02.060709.ebuild: - (#152424) Missing dep on unzip. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 30 Aug 2006; Donnie Berkholz ; - reduce-3.02.060709.ebuild: - Directory names changed in the tarball, causing breakage. Fix it. - - 20 Aug 2006; Donnie Berkholz ; - +files/3.02.060709-remove-extra-qualification.patch: - (#143858) Add a forgotten patch. - -*reduce-3.02.060709 (09 Aug 2006) - - 09 Aug 2006; Donnie Berkholz ; - +reduce-3.02.060709.ebuild: - Bump. - - 09 Aug 2006; Donnie Berkholz ; - reduce-2.21.030604.ebuild: - Update SRC_URI. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 09 Jul 2006; Donnie Berkholz ; - reduce-2.21.030604.ebuild: - x86/ppc stable. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*reduce-2.21.030604 (04 Jun 2006) - - 04 Jun 2006; Donnie Berkholz ; - +files/2.21.030604-gcc4.patch, +metadata.xml, +reduce-2.21.030604.ebuild: - New package to add hydrogens to a Protein Data Bank (PDB) molecule structure - file. - diff --git a/sci-chemistry/reduce/ChangeLog-2015 b/sci-chemistry/reduce/ChangeLog-2015 new file mode 100644 index 00000000..32182040 --- /dev/null +++ b/sci-chemistry/reduce/ChangeLog-2015 @@ -0,0 +1,100 @@ +# ChangeLog for sci-chemistry/reduce +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.22 2015/04/07 14:38:58 jlec Exp $ + +*reduce-3.16.111118 (07 Dec 2012) + + 07 Dec 2012; Justin Lecher +reduce-3.16.111118.ebuild, + metadata.xml: + Version Bump + + 28 May 2011; Brent Baude reduce-3.13.080428-r1.ebuild: + Marking reduce-3.13.080428-r1 ppc for bug 325999 + +*reduce-3.14.080821 (03 May 2011) + + 03 May 2011; Justin Lecher +files/3.14.080821-CFLAGS.patch, + reduce-3.13.080428-r1.ebuild, +reduce-3.14.080821.ebuild: + Version Bump, notified by euscan + + 20 Sep 2010; Justin Lecher + -files/2.21.030604-gcc4.patch, + -files/3.02.060709-remove-extra-qualification.patch, + +files/3.13.080428-CFLAGS.patch, reduce-3.13.080428-r1.ebuild: + Respect CFLAGS, removed old patches + + 15 Jul 2010; Markus Meier + reduce-3.13.080428-r1.ebuild: + x86 stable, bug #325999 + + 14 Jul 2010; Justin Lecher reduce-3.13.080428-r1.ebuild: + You should not use EPREFIX with helpers + + 28 Jun 2010; Christoph Mende + reduce-3.13.080428-r1.ebuild: + Stable on amd64 wrt bug #325999 + + 22 Apr 2010; Justin Lecher reduce-3.13.080428-r1.ebuild: + Keyworded for ~*-linux + +*reduce-3.13.080428-r1 (05 Feb 2010) + + 05 Feb 2010; Justin Lecher (jlec) + +files/3.13.080428-LDFLAGS.patch, -reduce-2.21.030604.ebuild, + -reduce-3.02.060709.ebuild, +reduce-3.13.080428-r1.ebuild: + Clean old versions, fix for 280857 & 280858 + + 29 May 2009; Donnie Berkholz ; + reduce-3.13.080428.ebuild: + Stable on amd64. + +*reduce-3.13.080428 (07 Jul 2008) + + 07 Jul 2008; Donnie Berkholz ; + +reduce-3.13.080428.ebuild: + (#230693) Bump. Keyword ~amd64. Thanks to Philipp Psurek for doing the + initial investigation on what changes happened. + + 23 Oct 2006; Donnie Berkholz ; + reduce-2.21.030604.ebuild, reduce-3.02.060709.ebuild: + (#152424) Missing dep on unzip. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 30 Aug 2006; Donnie Berkholz ; + reduce-3.02.060709.ebuild: + Directory names changed in the tarball, causing breakage. Fix it. + + 20 Aug 2006; Donnie Berkholz ; + +files/3.02.060709-remove-extra-qualification.patch: + (#143858) Add a forgotten patch. + +*reduce-3.02.060709 (09 Aug 2006) + + 09 Aug 2006; Donnie Berkholz ; + +reduce-3.02.060709.ebuild: + Bump. + + 09 Aug 2006; Donnie Berkholz ; + reduce-2.21.030604.ebuild: + Update SRC_URI. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz ; + reduce-2.21.030604.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*reduce-2.21.030604 (04 Jun 2006) + + 04 Jun 2006; Donnie Berkholz ; + +files/2.21.030604-gcc4.patch, +metadata.xml, +reduce-2.21.030604.ebuild: + New package to add hydrogens to a Protein Data Bank (PDB) molecule structure + file. + diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog deleted file mode 100644 index 1dfddb32..00000000 --- a/sci-chemistry/refmac/ChangeLog +++ /dev/null @@ -1,318 +0,0 @@ -# ChangeLog for sci-chemistry/refmac -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.61 2015/04/07 14:39:07 jlec Exp $ - - 06 Jan 2014; Justin Lecher refmac-5.5.0110-r3.ebuild: - Punt base.eclass - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 02 Jun 2013; Justin Lecher -refmac-5.6.0119.ebuild: - Drop obsolete versions - - 27 Feb 2013; Justin Lecher refmac-5.5.0110-r3.ebuild, - refmac-5.6.0119.ebuild: - Add missing dep on virtual/pkgconfig - - 20 Feb 2013; Justin Lecher refmac-5.5.0110-r3.ebuild, - refmac-5.6.0119.ebuild: - Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config - - 03 Feb 2013; Justin Lecher -refmac-5.5.0110-r2.ebuild: - Drop old, fixes build problem with stable gcc, #454290 - - 03 Feb 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: - Stable for ppc, wrt bug #454310 - - 31 Jan 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: - Stable for amd64, wrt bug #454310 - - 30 Jan 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: - Stable for x86, wrt bug #454310 - - 27 Jan 2013; Justin Lecher metadata.xml: - Fix metadata.xml - - 19 Oct 2012; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.5.0110-r3.ebuild, -refmac-5.6.0117.ebuild, refmac-5.6.0119.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - -*refmac-5.6.0119 (11 Jul 2011) - - 11 Jul 2011; Justin Lecher +refmac-5.6.0119.ebuild: - Version Bump - - 29 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.5.0110-r3.ebuild, refmac-5.6.0117.ebuild, metadata.xml: - Block makecif for 5.6 - - 21 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.5.0110-r3.ebuild, refmac-5.6.0117.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.5.0110-r3.ebuild, -refmac-5.6.0110.ebuild, -refmac-5.6.0116.ebuild, - refmac-5.6.0117.ebuild: - Added fortran-2.eclass and fix for ifort and pathscale - -*refmac-5.6.0117 (14 Jun 2011) - - 14 Jun 2011; Justin Lecher +refmac-5.6.0117.ebuild: - Version Bump - -*refmac-5.6.0116 (21 Apr 2011) - - 21 Apr 2011; Justin Lecher +files/5.5.0110-gcc4.6.patch, - refmac-5.5.0110-r3.ebuild, +files/5.6.0110-allow-dynamic-linking.patch, - -refmac-5.6.0097.ebuild, +files/5.6.0116-allow-dynamic-linking.patch, - refmac-5.5.0110-r2.ebuild, -refmac-5.6.0098.ebuild, -refmac-5.6.0099.ebuild, - -refmac-5.6.0102.ebuild, -files/5.5-allow-dynamic-linking.patch, - -refmac-5.6.0102-r1.ebuild, -files/5.6.0102-allow-dynamic-linking.patch, - refmac-5.6.0110.ebuild, -files/5.6.0075-allow-dynamic-linking.patch, - +refmac-5.6.0116.ebuild, -files/5.6.0078-allow-dynamic-linking.patch, - -files/5.6.0080-allow-dynamic-linking.patch, - -files/5.6.0081-allow-dynamic-linking.patch, - -files/5.6.0083-allow-dynamic-linking.patch, - -files/5.6.0084-allow-dynamic-linking.patch, - -files/5.6.0085-allow-dynamic-linking.patch, - -files/5.6.0086-allow-dynamic-linking.patch, - -files/5.6.0088-allow-dynamic-linking.patch, - -files/5.6.0089-allow-dynamic-linking.patch, - -files/5.6.0092-allow-dynamic-linking.patch, - -files/5.6.0094-allow-dynamic-linking.patch, - -files/5.6.0096-allow-dynamic-linking.patch, - -files/5.6.0097-allow-dynamic-linking.patch, - -files/5.6.0098-allow-dynamic-linking.patch: - Version Bump, Cleanup, Fixes for gcc-4.6 - -*refmac-5.6.0110 (26 Feb 2011) - - 26 Feb 2011; Justin Lecher +refmac-5.6.0110.ebuild: - Version Bump - -*refmac-5.6.0102-r1 (31 Jan 2011) -*refmac-5.5.0110-r3 (31 Jan 2011) - - 31 Jan 2011; Donnie Berkholz ; - +refmac-5.5.0110-r3.ebuild, +refmac-5.6.0102-r1.ebuild: - Fix for ARP/wARP. It looked for Refmac in a location where we didn't have it, - so make another symlink. - -*refmac-5.6.0102 (28 Jan 2011) - - 28 Jan 2011; Justin Lecher - +files/5.6.0102-allow-dynamic-linking.patch, +refmac-5.6.0102.ebuild: - Version Bump - - 20 Jan 2011; Markos Chandras refmac-5.5.0110-r2.ebuild: - Stable on amd64 wrt bug #349587 - - 16 Jan 2011; Thomas Kahle refmac-5.5.0110-r2.ebuild: - x86 stable per bug 349587 - - 16 Jan 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.6.0097.ebuild, refmac-5.6.0098.ebuild, refmac-5.6.0099.ebuild: - Fix sourcing of ccp4 profile file for test - - 16 Jan 2011; Kacper Kowalik - refmac-5.5.0110-r2.ebuild, refmac-5.6.0099.ebuild: - marked ~ppc wrt #303931 - - 16 Jan 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, - refmac-5.6.0097.ebuild, refmac-5.6.0098.ebuild, refmac-5.6.0099.ebuild: - Source /etc/profile before testing - -*refmac-5.6.0099 (14 Jan 2011) - - 14 Jan 2011; Justin Lecher +refmac-5.6.0099.ebuild: - Version Bump - -*refmac-5.6.0098 (11 Jan 2011) - - 11 Jan 2011; Justin Lecher - +files/5.6.0098-allow-dynamic-linking.patch, +refmac-5.6.0098.ebuild: - Version Bump - - 10 Jan 2011; Justin Lecher -refmac-5.5.0109.ebuild, - -refmac-5.5.0110.ebuild, -refmac-5.5.0110-r1.ebuild, - refmac-5.5.0110-r2.ebuild, -refmac-5.6.0093.ebuild, -refmac-5.6.0094.ebuild, - -refmac-5.6.0096.ebuild, refmac-5.6.0097.ebuild: - Moved the installation of profile files from sci-chemistry/ccp4-apps to - sci-libs/ccp4-libs, #349700 - -*refmac-5.6.0097 (04 Jan 2011) - - 04 Jan 2011; Justin Lecher - +files/5.6.0097-allow-dynamic-linking.patch, +refmac-5.6.0097.ebuild: - Version Bump - - 31 Dec 2010; Justin Lecher refmac-5.5.0110-r2.ebuild: - Depend correct ccp4-libs version to make test work - - 25 Dec 2010; Justin Lecher refmac-5.5.0110-r2.ebuild: - Removed installation of libcheck again, #349700 - -*refmac-5.5.0110-r2 (24 Dec 2010) - - 24 Dec 2010; Justin Lecher - files/5.5.0110-allow-dynamic-linking.patch, +refmac-5.5.0110-r2.ebuild: - Don't mix FLAGS - -*refmac-5.6.0096 (21 Dec 2010) - - 21 Dec 2010; Justin Lecher - +files/5.6.0096-allow-dynamic-linking.patch, +refmac-5.6.0096.ebuild: - Version Bump - - 16 Dec 2010; Justin Lecher refmac-5.5.0109.ebuild, - refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0093.ebuild, - refmac-5.6.0094.ebuild: - Removal of fortran.eclass, #348851 - -*refmac-5.6.0094 (07 Dec 2010) - - 07 Dec 2010; Justin Lecher - +files/5.6.0094-allow-dynamic-linking.patch, -refmac-5.6.0085.ebuild, - -refmac-5.6.0086.ebuild, -refmac-5.6.0088.ebuild, -refmac-5.6.0089.ebuild, - -refmac-5.6.0090.ebuild, -refmac-5.6.0091.ebuild, -refmac-5.6.0092.ebuild, - +refmac-5.6.0094.ebuild: - Version Bump, cleaned old - -*refmac-5.6.0093 (17 Nov 2010) - - 17 Nov 2010; Justin Lecher +refmac-5.6.0093.ebuild: - Version Bump - -*refmac-5.6.0092 (16 Nov 2010) - - 16 Nov 2010; Justin Lecher - +files/5.6.0092-allow-dynamic-linking.patch, +refmac-5.6.0092.ebuild: - Version Bump - -*refmac-5.6.0091 (06 Nov 2010) - - 06 Nov 2010; Justin Lecher +refmac-5.6.0091.ebuild: - Version Bump - -*refmac-5.6.0090 (04 Nov 2010) - - 04 Nov 2010; Justin Lecher +refmac-5.6.0090.ebuild: - Version Bump - -*refmac-5.6.0089 (04 Nov 2010) - - 04 Nov 2010; Justin Lecher - +files/5.6.0089-allow-dynamic-linking.patch, +refmac-5.6.0089.ebuild: - Version Bump - -*refmac-5.6.0088 (03 Nov 2010) - - 03 Nov 2010; Justin Lecher - +files/5.6.0088-allow-dynamic-linking.patch, +refmac-5.6.0088.ebuild: - Version Bump - -*refmac-5.6.0086 (20 Oct 2010) - - 20 Oct 2010; Justin Lecher - +files/5.6.0086-allow-dynamic-linking.patch, -refmac-5.6.0083.ebuild, - -refmac-5.6.0084.ebuild, +refmac-5.6.0086.ebuild: - Version Bump, removed old - -*refmac-5.6.0085 (30 Sep 2010) - - 30 Sep 2010; Justin Lecher - +files/5.6.0085-allow-dynamic-linking.patch, +refmac-5.6.0085.ebuild: - Version Bump - -*refmac-5.6.0084 (27 Sep 2010) - - 27 Sep 2010; Justin Lecher - +files/5.6.0084-allow-dynamic-linking.patch, -refmac-5.6.0080.ebuild, - -refmac-5.6.0081.ebuild, +refmac-5.6.0084.ebuild: - Version Bump - -*refmac-5.6.0083 (24 Sep 2010) - - 24 Sep 2010; Justin Lecher - +files/5.6.0083-allow-dynamic-linking.patch, +refmac-5.6.0083.ebuild: - Keyworded for ~-linux, Version Bump - - 06 Jul 2010; Justin Lecher - +files/5.6.0081-allow-dynamic-linking.patch, refmac-5.6.0081.ebuild: - Fixed prll compilation - -*refmac-5.6.0081 (06 Jul 2010) - - 06 Jul 2010; Justin Lecher -refmac-5.6.0077.ebuild, - -refmac-5.6.0078.ebuild, -refmac-5.6.0079.ebuild, +refmac-5.6.0081.ebuild: - Removed old, Version Bump - -*refmac-5.6.0080 (03 Jul 2010) - - 03 Jul 2010; Justin Lecher - +files/5.6.0080-allow-dynamic-linking.patch, +refmac-5.6.0080.ebuild: - Version Bump, removed old - -*refmac-5.6.0079 (02 Jul 2010) - - 02 Jul 2010; Justin Lecher +refmac-5.6.0079.ebuild: - Version Bump - -*refmac-5.6.0078 (28 Jun 2010) - - 28 Jun 2010; Justin Lecher - +files/5.6.0078-allow-dynamic-linking.patch, -refmac-5.6.0076.ebuild, - +refmac-5.6.0078.ebuild: - Version Bump - - 16 Jun 2010; Justin Lecher refmac-5.5.0109.ebuild, - refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0076.ebuild, - refmac-5.6.0077.ebuild: - Added sci-libs/monomer-db DEP - - 15 Jun 2010; Justin Lecher +refmac-5.5.0110-r1.ebuild: - Unbundled makecif into sci-chemistry/makecif - -*refmac-5.5.0110-r1 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher +refmac-5.5.0110-r1.ebuild: - Exclude makecif from refmac cause we have sci-chemistry/makecif now - -*refmac-5.6.0077 (27 May 2010) - - 27 May 2010; Justin Lecher -refmac-5.6.0075.ebuild, - +refmac-5.6.0077.ebuild: - Version Bump - -*refmac-5.6.0076 (18 May 2010) - - 18 May 2010; Justin Lecher +refmac-5.6.0076.ebuild: - Version Bump - -*refmac-5.6.0075 (16 May 2010) - - 16 May 2010; Justin Lecher - +files/5.6.0075-allow-dynamic-linking.patch, +refmac-5.6.0075.ebuild: - Version bump - -*refmac-5.5.0110 (13 May 2010) - - 13 May 2010; Justin Lecher - +files/5.5.0110-allow-dynamic-linking.patch, +refmac-5.5.0110.ebuild: - Version Bump, New CBIN location - - 28 Mar 2010; Justin Lecher refmac-5.5.0109.ebuild: - Keyworded for ~x86-linux ~amd64-linux - - 14 Feb 2010; Justin Lecher (jlec) - refmac-5.5.0109.ebuild: - Corrected wrong naming of patch - -*refmac-5.5.0109 (02 Feb 2010) - - 02 Feb 2010; Justin Lecher (jlec) - +files/5.5-allow-dynamic-linking.patch, +files/5.5-test.log.patch, - +refmac-5.5.0109.ebuild, +metadata.xml: - refmac splitted from ccp4 package diff --git a/sci-chemistry/refmac/ChangeLog-2015 b/sci-chemistry/refmac/ChangeLog-2015 new file mode 100644 index 00000000..1dfddb32 --- /dev/null +++ b/sci-chemistry/refmac/ChangeLog-2015 @@ -0,0 +1,318 @@ +# ChangeLog for sci-chemistry/refmac +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.61 2015/04/07 14:39:07 jlec Exp $ + + 06 Jan 2014; Justin Lecher refmac-5.5.0110-r3.ebuild: + Punt base.eclass + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 02 Jun 2013; Justin Lecher -refmac-5.6.0119.ebuild: + Drop obsolete versions + + 27 Feb 2013; Justin Lecher refmac-5.5.0110-r3.ebuild, + refmac-5.6.0119.ebuild: + Add missing dep on virtual/pkgconfig + + 20 Feb 2013; Justin Lecher refmac-5.5.0110-r3.ebuild, + refmac-5.6.0119.ebuild: + Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config + + 03 Feb 2013; Justin Lecher -refmac-5.5.0110-r2.ebuild: + Drop old, fixes build problem with stable gcc, #454290 + + 03 Feb 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: + Stable for ppc, wrt bug #454310 + + 31 Jan 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: + Stable for amd64, wrt bug #454310 + + 30 Jan 2013; Agostino Sarubbo refmac-5.5.0110-r3.ebuild: + Stable for x86, wrt bug #454310 + + 27 Jan 2013; Justin Lecher metadata.xml: + Fix metadata.xml + + 19 Oct 2012; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.5.0110-r3.ebuild, -refmac-5.6.0117.ebuild, refmac-5.6.0119.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + +*refmac-5.6.0119 (11 Jul 2011) + + 11 Jul 2011; Justin Lecher +refmac-5.6.0119.ebuild: + Version Bump + + 29 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.5.0110-r3.ebuild, refmac-5.6.0117.ebuild, metadata.xml: + Block makecif for 5.6 + + 21 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.5.0110-r3.ebuild, refmac-5.6.0117.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.5.0110-r3.ebuild, -refmac-5.6.0110.ebuild, -refmac-5.6.0116.ebuild, + refmac-5.6.0117.ebuild: + Added fortran-2.eclass and fix for ifort and pathscale + +*refmac-5.6.0117 (14 Jun 2011) + + 14 Jun 2011; Justin Lecher +refmac-5.6.0117.ebuild: + Version Bump + +*refmac-5.6.0116 (21 Apr 2011) + + 21 Apr 2011; Justin Lecher +files/5.5.0110-gcc4.6.patch, + refmac-5.5.0110-r3.ebuild, +files/5.6.0110-allow-dynamic-linking.patch, + -refmac-5.6.0097.ebuild, +files/5.6.0116-allow-dynamic-linking.patch, + refmac-5.5.0110-r2.ebuild, -refmac-5.6.0098.ebuild, -refmac-5.6.0099.ebuild, + -refmac-5.6.0102.ebuild, -files/5.5-allow-dynamic-linking.patch, + -refmac-5.6.0102-r1.ebuild, -files/5.6.0102-allow-dynamic-linking.patch, + refmac-5.6.0110.ebuild, -files/5.6.0075-allow-dynamic-linking.patch, + +refmac-5.6.0116.ebuild, -files/5.6.0078-allow-dynamic-linking.patch, + -files/5.6.0080-allow-dynamic-linking.patch, + -files/5.6.0081-allow-dynamic-linking.patch, + -files/5.6.0083-allow-dynamic-linking.patch, + -files/5.6.0084-allow-dynamic-linking.patch, + -files/5.6.0085-allow-dynamic-linking.patch, + -files/5.6.0086-allow-dynamic-linking.patch, + -files/5.6.0088-allow-dynamic-linking.patch, + -files/5.6.0089-allow-dynamic-linking.patch, + -files/5.6.0092-allow-dynamic-linking.patch, + -files/5.6.0094-allow-dynamic-linking.patch, + -files/5.6.0096-allow-dynamic-linking.patch, + -files/5.6.0097-allow-dynamic-linking.patch, + -files/5.6.0098-allow-dynamic-linking.patch: + Version Bump, Cleanup, Fixes for gcc-4.6 + +*refmac-5.6.0110 (26 Feb 2011) + + 26 Feb 2011; Justin Lecher +refmac-5.6.0110.ebuild: + Version Bump + +*refmac-5.6.0102-r1 (31 Jan 2011) +*refmac-5.5.0110-r3 (31 Jan 2011) + + 31 Jan 2011; Donnie Berkholz ; + +refmac-5.5.0110-r3.ebuild, +refmac-5.6.0102-r1.ebuild: + Fix for ARP/wARP. It looked for Refmac in a location where we didn't have it, + so make another symlink. + +*refmac-5.6.0102 (28 Jan 2011) + + 28 Jan 2011; Justin Lecher + +files/5.6.0102-allow-dynamic-linking.patch, +refmac-5.6.0102.ebuild: + Version Bump + + 20 Jan 2011; Markos Chandras refmac-5.5.0110-r2.ebuild: + Stable on amd64 wrt bug #349587 + + 16 Jan 2011; Thomas Kahle refmac-5.5.0110-r2.ebuild: + x86 stable per bug 349587 + + 16 Jan 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.6.0097.ebuild, refmac-5.6.0098.ebuild, refmac-5.6.0099.ebuild: + Fix sourcing of ccp4 profile file for test + + 16 Jan 2011; Kacper Kowalik + refmac-5.5.0110-r2.ebuild, refmac-5.6.0099.ebuild: + marked ~ppc wrt #303931 + + 16 Jan 2011; Justin Lecher refmac-5.5.0110-r2.ebuild, + refmac-5.6.0097.ebuild, refmac-5.6.0098.ebuild, refmac-5.6.0099.ebuild: + Source /etc/profile before testing + +*refmac-5.6.0099 (14 Jan 2011) + + 14 Jan 2011; Justin Lecher +refmac-5.6.0099.ebuild: + Version Bump + +*refmac-5.6.0098 (11 Jan 2011) + + 11 Jan 2011; Justin Lecher + +files/5.6.0098-allow-dynamic-linking.patch, +refmac-5.6.0098.ebuild: + Version Bump + + 10 Jan 2011; Justin Lecher -refmac-5.5.0109.ebuild, + -refmac-5.5.0110.ebuild, -refmac-5.5.0110-r1.ebuild, + refmac-5.5.0110-r2.ebuild, -refmac-5.6.0093.ebuild, -refmac-5.6.0094.ebuild, + -refmac-5.6.0096.ebuild, refmac-5.6.0097.ebuild: + Moved the installation of profile files from sci-chemistry/ccp4-apps to + sci-libs/ccp4-libs, #349700 + +*refmac-5.6.0097 (04 Jan 2011) + + 04 Jan 2011; Justin Lecher + +files/5.6.0097-allow-dynamic-linking.patch, +refmac-5.6.0097.ebuild: + Version Bump + + 31 Dec 2010; Justin Lecher refmac-5.5.0110-r2.ebuild: + Depend correct ccp4-libs version to make test work + + 25 Dec 2010; Justin Lecher refmac-5.5.0110-r2.ebuild: + Removed installation of libcheck again, #349700 + +*refmac-5.5.0110-r2 (24 Dec 2010) + + 24 Dec 2010; Justin Lecher + files/5.5.0110-allow-dynamic-linking.patch, +refmac-5.5.0110-r2.ebuild: + Don't mix FLAGS + +*refmac-5.6.0096 (21 Dec 2010) + + 21 Dec 2010; Justin Lecher + +files/5.6.0096-allow-dynamic-linking.patch, +refmac-5.6.0096.ebuild: + Version Bump + + 16 Dec 2010; Justin Lecher refmac-5.5.0109.ebuild, + refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0093.ebuild, + refmac-5.6.0094.ebuild: + Removal of fortran.eclass, #348851 + +*refmac-5.6.0094 (07 Dec 2010) + + 07 Dec 2010; Justin Lecher + +files/5.6.0094-allow-dynamic-linking.patch, -refmac-5.6.0085.ebuild, + -refmac-5.6.0086.ebuild, -refmac-5.6.0088.ebuild, -refmac-5.6.0089.ebuild, + -refmac-5.6.0090.ebuild, -refmac-5.6.0091.ebuild, -refmac-5.6.0092.ebuild, + +refmac-5.6.0094.ebuild: + Version Bump, cleaned old + +*refmac-5.6.0093 (17 Nov 2010) + + 17 Nov 2010; Justin Lecher +refmac-5.6.0093.ebuild: + Version Bump + +*refmac-5.6.0092 (16 Nov 2010) + + 16 Nov 2010; Justin Lecher + +files/5.6.0092-allow-dynamic-linking.patch, +refmac-5.6.0092.ebuild: + Version Bump + +*refmac-5.6.0091 (06 Nov 2010) + + 06 Nov 2010; Justin Lecher +refmac-5.6.0091.ebuild: + Version Bump + +*refmac-5.6.0090 (04 Nov 2010) + + 04 Nov 2010; Justin Lecher +refmac-5.6.0090.ebuild: + Version Bump + +*refmac-5.6.0089 (04 Nov 2010) + + 04 Nov 2010; Justin Lecher + +files/5.6.0089-allow-dynamic-linking.patch, +refmac-5.6.0089.ebuild: + Version Bump + +*refmac-5.6.0088 (03 Nov 2010) + + 03 Nov 2010; Justin Lecher + +files/5.6.0088-allow-dynamic-linking.patch, +refmac-5.6.0088.ebuild: + Version Bump + +*refmac-5.6.0086 (20 Oct 2010) + + 20 Oct 2010; Justin Lecher + +files/5.6.0086-allow-dynamic-linking.patch, -refmac-5.6.0083.ebuild, + -refmac-5.6.0084.ebuild, +refmac-5.6.0086.ebuild: + Version Bump, removed old + +*refmac-5.6.0085 (30 Sep 2010) + + 30 Sep 2010; Justin Lecher + +files/5.6.0085-allow-dynamic-linking.patch, +refmac-5.6.0085.ebuild: + Version Bump + +*refmac-5.6.0084 (27 Sep 2010) + + 27 Sep 2010; Justin Lecher + +files/5.6.0084-allow-dynamic-linking.patch, -refmac-5.6.0080.ebuild, + -refmac-5.6.0081.ebuild, +refmac-5.6.0084.ebuild: + Version Bump + +*refmac-5.6.0083 (24 Sep 2010) + + 24 Sep 2010; Justin Lecher + +files/5.6.0083-allow-dynamic-linking.patch, +refmac-5.6.0083.ebuild: + Keyworded for ~-linux, Version Bump + + 06 Jul 2010; Justin Lecher + +files/5.6.0081-allow-dynamic-linking.patch, refmac-5.6.0081.ebuild: + Fixed prll compilation + +*refmac-5.6.0081 (06 Jul 2010) + + 06 Jul 2010; Justin Lecher -refmac-5.6.0077.ebuild, + -refmac-5.6.0078.ebuild, -refmac-5.6.0079.ebuild, +refmac-5.6.0081.ebuild: + Removed old, Version Bump + +*refmac-5.6.0080 (03 Jul 2010) + + 03 Jul 2010; Justin Lecher + +files/5.6.0080-allow-dynamic-linking.patch, +refmac-5.6.0080.ebuild: + Version Bump, removed old + +*refmac-5.6.0079 (02 Jul 2010) + + 02 Jul 2010; Justin Lecher +refmac-5.6.0079.ebuild: + Version Bump + +*refmac-5.6.0078 (28 Jun 2010) + + 28 Jun 2010; Justin Lecher + +files/5.6.0078-allow-dynamic-linking.patch, -refmac-5.6.0076.ebuild, + +refmac-5.6.0078.ebuild: + Version Bump + + 16 Jun 2010; Justin Lecher refmac-5.5.0109.ebuild, + refmac-5.5.0110.ebuild, refmac-5.5.0110-r1.ebuild, refmac-5.6.0076.ebuild, + refmac-5.6.0077.ebuild: + Added sci-libs/monomer-db DEP + + 15 Jun 2010; Justin Lecher +refmac-5.5.0110-r1.ebuild: + Unbundled makecif into sci-chemistry/makecif + +*refmac-5.5.0110-r1 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher +refmac-5.5.0110-r1.ebuild: + Exclude makecif from refmac cause we have sci-chemistry/makecif now + +*refmac-5.6.0077 (27 May 2010) + + 27 May 2010; Justin Lecher -refmac-5.6.0075.ebuild, + +refmac-5.6.0077.ebuild: + Version Bump + +*refmac-5.6.0076 (18 May 2010) + + 18 May 2010; Justin Lecher +refmac-5.6.0076.ebuild: + Version Bump + +*refmac-5.6.0075 (16 May 2010) + + 16 May 2010; Justin Lecher + +files/5.6.0075-allow-dynamic-linking.patch, +refmac-5.6.0075.ebuild: + Version bump + +*refmac-5.5.0110 (13 May 2010) + + 13 May 2010; Justin Lecher + +files/5.5.0110-allow-dynamic-linking.patch, +refmac-5.5.0110.ebuild: + Version Bump, New CBIN location + + 28 Mar 2010; Justin Lecher refmac-5.5.0109.ebuild: + Keyworded for ~x86-linux ~amd64-linux + + 14 Feb 2010; Justin Lecher (jlec) + refmac-5.5.0109.ebuild: + Corrected wrong naming of patch + +*refmac-5.5.0109 (02 Feb 2010) + + 02 Feb 2010; Justin Lecher (jlec) + +files/5.5-allow-dynamic-linking.patch, +files/5.5-test.log.patch, + +refmac-5.5.0109.ebuild, +metadata.xml: + refmac splitted from ccp4 package diff --git a/sci-chemistry/relax/ChangeLog b/sci-chemistry/relax/ChangeLog deleted file mode 100644 index ef0cc427..00000000 --- a/sci-chemistry/relax/ChangeLog +++ /dev/null @@ -1,206 +0,0 @@ -# ChangeLog for sci-chemistry/relax -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/relax/ChangeLog,v 1.37 2015/04/07 14:39:15 jlec Exp $ - -*relax-3.3.8 (04 Apr 2015) - - 04 Apr 2015; Justin Lecher +relax-3.3.8.ebuild: - Version Bump - -*relax-3.3.7 (15 Mar 2015) - - 15 Mar 2015; Justin Lecher +relax-3.3.7.ebuild, - relax-3.3.6.ebuild: - Version Bump - - 07 Feb 2015; Justin Lecher -files/relax-2.1.0-gentoo.patch, - -files/relax-2.2.1-gentoo.patch, -files/relax-3.0.1-gentoo.patch, - -files/relax-3.0.2-wxpython.patch, -files/relax-3.0.2-wxpython-2.patch, - -files/relax-3.1.0-sample-script.patch, - -files/relax-3.1.0-sample-script-backport.patch, - -files/relax-3.1.7-dpar.patch, -files/relax-3.2.2-gentoo.patch: - Drop old patches - -*relax-3.3.6 (07 Feb 2015) - - 07 Feb 2015; Justin Lecher -relax-2.1.0.ebuild, - -relax-2.2.1.ebuild, -relax-2.2.5.ebuild, -relax-3.0.1.ebuild, - -relax-3.0.2-r2.ebuild, -relax-3.1.0-r2.ebuild, -relax-3.1.1-r1.ebuild, - -relax-3.1.2.ebuild, -relax-3.1.3.ebuild, -relax-3.1.4.ebuild, - -relax-3.1.5.ebuild, -relax-3.1.6.ebuild, -relax-3.1.7.ebuild, - -relax-3.1.7-r1.ebuild, -relax-3.2.0.ebuild, -relax-3.2.1.ebuild, - -relax-3.2.2.ebuild, -relax-3.2.3.ebuild, -relax-3.3.0.ebuild, - -relax-3.3.1.ebuild, -relax-3.3.2.ebuild, -relax-3.3.3.ebuild, - +relax-3.3.6.ebuild, -relax-9999.ebuild: - Version Bump; drop old - -*relax-3.3.5 (29 Jan 2015) - - 29 Jan 2015; Justin Lecher +relax-3.3.5.ebuild: - Version Bump - -*relax-3.3.4 (05 Dec 2014) - - 05 Dec 2014; Justin Lecher +relax-3.3.4.ebuild: - Version Bump - -*relax-3.3.3 (25 Nov 2014) - - 25 Nov 2014; Justin Lecher +relax-3.3.3.ebuild: - Version Bump - -*relax-3.3.2 (17 Nov 2014) - - 17 Nov 2014; Justin Lecher +relax-3.3.2.ebuild: - Version Bump - -*relax-3.3.1 (10 Oct 2014) - - 10 Oct 2014; Justin Lecher +relax-3.3.1.ebuild: - Version Bump - -*relax-3.3.0 (15 Sep 2014) - - 15 Sep 2014; Justin Lecher +relax-3.3.0.ebuild: - Version Bump - -*relax-3.2.3 (04 Jul 2014) - - 04 Jul 2014; Justin Lecher +relax-3.2.3.ebuild: - Version Bump - -*relax-3.2.2 (06 Jun 2014) - - 06 Jun 2014; Justin Lecher +relax-3.2.2.ebuild, - +files/relax-3.2.2-gentoo.patch: - Version Bump - -*relax-3.2.1 (26 May 2014) - - 26 May 2014; Justin Lecher +relax-3.2.1.ebuild: - Version Bump - -*relax-3.2.0 (22 May 2014) - - 22 May 2014; Justin Lecher +relax-3.2.0.ebuild: - Version Bump - -*relax-3.1.7-r1 (15 May 2014) - - 15 May 2014; Justin Lecher +relax-3.1.7-r1.ebuild, - +files/relax-3.1.7-dpar.patch: - Backport fix for http://gna.org/bugs/?22039 - -*relax-3.1.7 (18 Mar 2014) - - 18 Mar 2014; Justin Lecher +relax-3.1.7.ebuild: - Version Bump - -*relax-3.1.6 (06 Mar 2014) - - 06 Mar 2014; Justin Lecher +relax-3.1.6.ebuild: - Version Bump - -*relax-3.1.5 (05 Feb 2014) - - 05 Feb 2014; Justin Lecher +relax-3.1.5.ebuild: - Version Bump - -*relax-3.1.4 (03 Feb 2014) - - 03 Feb 2014; Justin Lecher +relax-3.1.4.ebuild: - Version Bump - -*relax-3.1.3 (17 Jan 2014) - - 17 Jan 2014; Justin Lecher +relax-3.1.3.ebuild: - Version Bump - -*relax-3.1.2 (14 Jan 2014) - - 14 Jan 2014; Justin Lecher +relax-3.1.2.ebuild: - Version Bump - -*relax-3.1.1-r1 (11 Dec 2013) - - 11 Dec 2013; Justin Lecher -relax-3.1.1.ebuild, - +relax-3.1.1-r1.ebuild: - Fix again png again - -*relax-3.1.1 (11 Dec 2013) - - 11 Dec 2013; Justin Lecher +relax-3.1.1.ebuild: - Version Bump - -*relax-9999 (29 Nov 2013) -*relax-3.1.0-r2 (29 Nov 2013) - - 29 Nov 2013; Justin Lecher -relax-3.1.0-r1.ebuild, - +relax-3.1.0-r2.ebuild, +relax-9999.ebuild, - +files/relax-3.1.0-sample-script-backport.patch: - Add another backport for sample scripts; add live ebuild - -*relax-3.1.0-r1 (29 Nov 2013) - - 29 Nov 2013; Justin Lecher -relax-3.1.0.ebuild, - +relax-3.1.0-r1.ebuild: - Fix icons - -*relax-3.1.0 (29 Nov 2013) - - 29 Nov 2013; Justin Lecher +relax-3.1.0.ebuild, - +files/relax-3.1.0-sample-script.patch: - Version Bump - -*relax-3.0.2-r2 (27 Nov 2013) - - 27 Nov 2013; Justin Lecher -relax-3.0.2-r1.ebuild, - +relax-3.0.2-r2.ebuild, +files/relax-3.0.2-wxpython-2.patch: - Fix test and wxpython support - -*relax-3.0.2-r1 (27 Nov 2013) - - 27 Nov 2013; Justin Lecher -relax-3.0.2.ebuild, - +relax-3.0.2-r1.ebuild, +files/relax-3.0.2-wxpython.patch: - Fix wxpython-2.8 usage - -*relax-3.0.2 (27 Nov 2013) - - 27 Nov 2013; Justin Lecher relax-2.2.5.ebuild, - +relax-3.0.2.ebuild: - Version Bump - - 16 Nov 2013; Ryan Hill relax-2.1.0.ebuild, - relax-2.2.1.ebuild, relax-2.2.5.ebuild, relax-3.0.1.ebuild: - Remove wxwidgets_pkg_setup call (unnecessary with USE deps). - -*relax-3.0.1 (22 Oct 2013) - - 22 Oct 2013; Justin Lecher +relax-3.0.1.ebuild, - +files/relax-3.0.1-gentoo.patch: - Version Bump - - 29 May 2013; Justin Lecher relax-2.2.1.ebuild, - relax-2.2.5.ebuild: - Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, - PYTHON_DEPS) - - 14 May 2013; Justin Lecher relax-2.2.5.ebuild: - Add missing dep on dev-python/wxpython - -*relax-2.2.5 (13 May 2013) - - 13 May 2013; Justin Lecher +relax-2.2.5.ebuild: - Version Bump - -*relax-2.2.1 (04 Feb 2013) - - 04 Feb 2013; Justin Lecher +relax-2.2.1.ebuild, - +files/relax-2.2.1-gentoo.patch, metadata.xml: - Version Bump - -*relax-2.1.0 (19 Jul 2012) - - 19 Jul 2012; Justin Lecher +relax-2.1.0.ebuild, - +files/relax-2.1.0-gentoo.patch, +metadata.xml: - New addition diff --git a/sci-chemistry/relax/ChangeLog-2015 b/sci-chemistry/relax/ChangeLog-2015 new file mode 100644 index 00000000..ef0cc427 --- /dev/null +++ b/sci-chemistry/relax/ChangeLog-2015 @@ -0,0 +1,206 @@ +# ChangeLog for sci-chemistry/relax +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/relax/ChangeLog,v 1.37 2015/04/07 14:39:15 jlec Exp $ + +*relax-3.3.8 (04 Apr 2015) + + 04 Apr 2015; Justin Lecher +relax-3.3.8.ebuild: + Version Bump + +*relax-3.3.7 (15 Mar 2015) + + 15 Mar 2015; Justin Lecher +relax-3.3.7.ebuild, + relax-3.3.6.ebuild: + Version Bump + + 07 Feb 2015; Justin Lecher -files/relax-2.1.0-gentoo.patch, + -files/relax-2.2.1-gentoo.patch, -files/relax-3.0.1-gentoo.patch, + -files/relax-3.0.2-wxpython.patch, -files/relax-3.0.2-wxpython-2.patch, + -files/relax-3.1.0-sample-script.patch, + -files/relax-3.1.0-sample-script-backport.patch, + -files/relax-3.1.7-dpar.patch, -files/relax-3.2.2-gentoo.patch: + Drop old patches + +*relax-3.3.6 (07 Feb 2015) + + 07 Feb 2015; Justin Lecher -relax-2.1.0.ebuild, + -relax-2.2.1.ebuild, -relax-2.2.5.ebuild, -relax-3.0.1.ebuild, + -relax-3.0.2-r2.ebuild, -relax-3.1.0-r2.ebuild, -relax-3.1.1-r1.ebuild, + -relax-3.1.2.ebuild, -relax-3.1.3.ebuild, -relax-3.1.4.ebuild, + -relax-3.1.5.ebuild, -relax-3.1.6.ebuild, -relax-3.1.7.ebuild, + -relax-3.1.7-r1.ebuild, -relax-3.2.0.ebuild, -relax-3.2.1.ebuild, + -relax-3.2.2.ebuild, -relax-3.2.3.ebuild, -relax-3.3.0.ebuild, + -relax-3.3.1.ebuild, -relax-3.3.2.ebuild, -relax-3.3.3.ebuild, + +relax-3.3.6.ebuild, -relax-9999.ebuild: + Version Bump; drop old + +*relax-3.3.5 (29 Jan 2015) + + 29 Jan 2015; Justin Lecher +relax-3.3.5.ebuild: + Version Bump + +*relax-3.3.4 (05 Dec 2014) + + 05 Dec 2014; Justin Lecher +relax-3.3.4.ebuild: + Version Bump + +*relax-3.3.3 (25 Nov 2014) + + 25 Nov 2014; Justin Lecher +relax-3.3.3.ebuild: + Version Bump + +*relax-3.3.2 (17 Nov 2014) + + 17 Nov 2014; Justin Lecher +relax-3.3.2.ebuild: + Version Bump + +*relax-3.3.1 (10 Oct 2014) + + 10 Oct 2014; Justin Lecher +relax-3.3.1.ebuild: + Version Bump + +*relax-3.3.0 (15 Sep 2014) + + 15 Sep 2014; Justin Lecher +relax-3.3.0.ebuild: + Version Bump + +*relax-3.2.3 (04 Jul 2014) + + 04 Jul 2014; Justin Lecher +relax-3.2.3.ebuild: + Version Bump + +*relax-3.2.2 (06 Jun 2014) + + 06 Jun 2014; Justin Lecher +relax-3.2.2.ebuild, + +files/relax-3.2.2-gentoo.patch: + Version Bump + +*relax-3.2.1 (26 May 2014) + + 26 May 2014; Justin Lecher +relax-3.2.1.ebuild: + Version Bump + +*relax-3.2.0 (22 May 2014) + + 22 May 2014; Justin Lecher +relax-3.2.0.ebuild: + Version Bump + +*relax-3.1.7-r1 (15 May 2014) + + 15 May 2014; Justin Lecher +relax-3.1.7-r1.ebuild, + +files/relax-3.1.7-dpar.patch: + Backport fix for http://gna.org/bugs/?22039 + +*relax-3.1.7 (18 Mar 2014) + + 18 Mar 2014; Justin Lecher +relax-3.1.7.ebuild: + Version Bump + +*relax-3.1.6 (06 Mar 2014) + + 06 Mar 2014; Justin Lecher +relax-3.1.6.ebuild: + Version Bump + +*relax-3.1.5 (05 Feb 2014) + + 05 Feb 2014; Justin Lecher +relax-3.1.5.ebuild: + Version Bump + +*relax-3.1.4 (03 Feb 2014) + + 03 Feb 2014; Justin Lecher +relax-3.1.4.ebuild: + Version Bump + +*relax-3.1.3 (17 Jan 2014) + + 17 Jan 2014; Justin Lecher +relax-3.1.3.ebuild: + Version Bump + +*relax-3.1.2 (14 Jan 2014) + + 14 Jan 2014; Justin Lecher +relax-3.1.2.ebuild: + Version Bump + +*relax-3.1.1-r1 (11 Dec 2013) + + 11 Dec 2013; Justin Lecher -relax-3.1.1.ebuild, + +relax-3.1.1-r1.ebuild: + Fix again png again + +*relax-3.1.1 (11 Dec 2013) + + 11 Dec 2013; Justin Lecher +relax-3.1.1.ebuild: + Version Bump + +*relax-9999 (29 Nov 2013) +*relax-3.1.0-r2 (29 Nov 2013) + + 29 Nov 2013; Justin Lecher -relax-3.1.0-r1.ebuild, + +relax-3.1.0-r2.ebuild, +relax-9999.ebuild, + +files/relax-3.1.0-sample-script-backport.patch: + Add another backport for sample scripts; add live ebuild + +*relax-3.1.0-r1 (29 Nov 2013) + + 29 Nov 2013; Justin Lecher -relax-3.1.0.ebuild, + +relax-3.1.0-r1.ebuild: + Fix icons + +*relax-3.1.0 (29 Nov 2013) + + 29 Nov 2013; Justin Lecher +relax-3.1.0.ebuild, + +files/relax-3.1.0-sample-script.patch: + Version Bump + +*relax-3.0.2-r2 (27 Nov 2013) + + 27 Nov 2013; Justin Lecher -relax-3.0.2-r1.ebuild, + +relax-3.0.2-r2.ebuild, +files/relax-3.0.2-wxpython-2.patch: + Fix test and wxpython support + +*relax-3.0.2-r1 (27 Nov 2013) + + 27 Nov 2013; Justin Lecher -relax-3.0.2.ebuild, + +relax-3.0.2-r1.ebuild, +files/relax-3.0.2-wxpython.patch: + Fix wxpython-2.8 usage + +*relax-3.0.2 (27 Nov 2013) + + 27 Nov 2013; Justin Lecher relax-2.2.5.ebuild, + +relax-3.0.2.ebuild: + Version Bump + + 16 Nov 2013; Ryan Hill relax-2.1.0.ebuild, + relax-2.2.1.ebuild, relax-2.2.5.ebuild, relax-3.0.1.ebuild: + Remove wxwidgets_pkg_setup call (unnecessary with USE deps). + +*relax-3.0.1 (22 Oct 2013) + + 22 Oct 2013; Justin Lecher +relax-3.0.1.ebuild, + +files/relax-3.0.1-gentoo.patch: + Version Bump + + 29 May 2013; Justin Lecher relax-2.2.1.ebuild, + relax-2.2.5.ebuild: + Fix usage of new python r1 eclasses (missing PYTHON_REQUIRED_USE, + PYTHON_DEPS) + + 14 May 2013; Justin Lecher relax-2.2.5.ebuild: + Add missing dep on dev-python/wxpython + +*relax-2.2.5 (13 May 2013) + + 13 May 2013; Justin Lecher +relax-2.2.5.ebuild: + Version Bump + +*relax-2.2.1 (04 Feb 2013) + + 04 Feb 2013; Justin Lecher +relax-2.2.1.ebuild, + +files/relax-2.2.1-gentoo.patch, metadata.xml: + Version Bump + +*relax-2.1.0 (19 Jul 2012) + + 19 Jul 2012; Justin Lecher +relax-2.1.0.ebuild, + +files/relax-2.1.0-gentoo.patch, +metadata.xml: + New addition diff --git a/sci-chemistry/scala/ChangeLog b/sci-chemistry/scala/ChangeLog deleted file mode 100644 index 8422ffc8..00000000 --- a/sci-chemistry/scala/ChangeLog +++ /dev/null @@ -1,89 +0,0 @@ -# ChangeLog for sci-chemistry/scala -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/scala/ChangeLog,v 1.22 2015/07/04 13:20:40 monsieurp Exp $ - - 04 Jul 2015; Patrice Clement scala-3.3.20.ebuild: - Update blocker on scala-bin (package has moved to dev-lang/). Fix bug 553912. - - 28 Feb 2015; Patrice Clement scala-3.3.20.ebuild: - Add two blockers against scala ebuilds and fix bug 541440. Signed off by jlec. - - 17 Dec 2012; Justin Lecher -scala-3.3.18-r2.ebuild, - metadata.xml: - Drop old - - 16 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: - Stable for ppc, wrt bug #446742 - - 14 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: - Stable for x86, wrt bug #446742 - - 14 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: - Stable for amd64, wrt bug #446742 - - 19 Oct 2012; Justin Lecher scala-3.3.18-r2.ebuild, - scala-3.3.20.ebuild: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 07 Jun 2012; Justin Lecher -scala-3.3.18-r1.ebuild, - metadata.xml: - Drop old - - 03 Jun 2012; Agostino Sarubbo scala-3.3.18-r2.ebuild: - Stable for amd64, wrt bug #418413 - - 01 Jun 2012; Andreas Schuerch scala-3.3.18-r2.ebuild: - x86 stable, see bug 418413 - - 04 May 2012; Jeff Horelick scala-3.3.18-r2.ebuild, - scala-3.3.20.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*scala-3.3.20 (27 Dec 2011) - - 27 Dec 2011; Justin Lecher +scala-3.3.20.ebuild: - Version Bump - - 21 Jun 2011; Justin Lecher scala-3.3.18-r1.ebuild, - scala-3.3.18-r2.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher scala-3.3.18-r1.ebuild, - scala-3.3.18-r2.ebuild: - Added fortran-2.eclass support - -*scala-3.3.18-r2 (10 Apr 2011) - - 10 Apr 2011; Justin Lecher +files/3.3.18-gcc4.6.patch, - +scala-3.3.18-r2.ebuild, files/Makefile.am, files/configure.ac: - Fix for compilation with gcc-4.6 (-fwhole-file), #362843; use pkg-config to - get lapack libs - - 18 Jan 2011; Thomas Kahle scala-3.3.18-r1.ebuild: - x86 stable per bug 351756 - - 16 Jan 2011; Kacper Kowalik - scala-3.3.18-r1.ebuild: - marked ~ppc wrt #303931 - - 15 Jan 2011; Markos Chandras scala-3.3.18-r1.ebuild: - Stable on amd64 wrt bug #351756 - - 16 Dec 2010; Justin Lecher scala-3.3.18-r1.ebuild: - Removal of fortran.eclass, #348851 - - 15 Jun 2010; Justin Lecher scala-3.3.18-r1.ebuild: - keyworded for linux prefix - -*scala-3.3.18-r1 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher -scala-3.3.18.ebuild, - +scala-3.3.18-r1.ebuild: - Necessary bump - -*scala-3.3.18 (04 Feb 2010) - - 04 Feb 2010; Justin Lecher (jlec) +scala-3.3.18.ebuild, - +files/Makefile.am, +files/configure.ac, +metadata.xml: - scala splitted of from ccp4 diff --git a/sci-chemistry/scala/ChangeLog-2015 b/sci-chemistry/scala/ChangeLog-2015 new file mode 100644 index 00000000..8422ffc8 --- /dev/null +++ b/sci-chemistry/scala/ChangeLog-2015 @@ -0,0 +1,89 @@ +# ChangeLog for sci-chemistry/scala +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/scala/ChangeLog,v 1.22 2015/07/04 13:20:40 monsieurp Exp $ + + 04 Jul 2015; Patrice Clement scala-3.3.20.ebuild: + Update blocker on scala-bin (package has moved to dev-lang/). Fix bug 553912. + + 28 Feb 2015; Patrice Clement scala-3.3.20.ebuild: + Add two blockers against scala ebuilds and fix bug 541440. Signed off by jlec. + + 17 Dec 2012; Justin Lecher -scala-3.3.18-r2.ebuild, + metadata.xml: + Drop old + + 16 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: + Stable for ppc, wrt bug #446742 + + 14 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: + Stable for x86, wrt bug #446742 + + 14 Dec 2012; Agostino Sarubbo scala-3.3.20.ebuild: + Stable for amd64, wrt bug #446742 + + 19 Oct 2012; Justin Lecher scala-3.3.18-r2.ebuild, + scala-3.3.20.ebuild: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 07 Jun 2012; Justin Lecher -scala-3.3.18-r1.ebuild, + metadata.xml: + Drop old + + 03 Jun 2012; Agostino Sarubbo scala-3.3.18-r2.ebuild: + Stable for amd64, wrt bug #418413 + + 01 Jun 2012; Andreas Schuerch scala-3.3.18-r2.ebuild: + x86 stable, see bug 418413 + + 04 May 2012; Jeff Horelick scala-3.3.18-r2.ebuild, + scala-3.3.20.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*scala-3.3.20 (27 Dec 2011) + + 27 Dec 2011; Justin Lecher +scala-3.3.20.ebuild: + Version Bump + + 21 Jun 2011; Justin Lecher scala-3.3.18-r1.ebuild, + scala-3.3.18-r2.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher scala-3.3.18-r1.ebuild, + scala-3.3.18-r2.ebuild: + Added fortran-2.eclass support + +*scala-3.3.18-r2 (10 Apr 2011) + + 10 Apr 2011; Justin Lecher +files/3.3.18-gcc4.6.patch, + +scala-3.3.18-r2.ebuild, files/Makefile.am, files/configure.ac: + Fix for compilation with gcc-4.6 (-fwhole-file), #362843; use pkg-config to + get lapack libs + + 18 Jan 2011; Thomas Kahle scala-3.3.18-r1.ebuild: + x86 stable per bug 351756 + + 16 Jan 2011; Kacper Kowalik + scala-3.3.18-r1.ebuild: + marked ~ppc wrt #303931 + + 15 Jan 2011; Markos Chandras scala-3.3.18-r1.ebuild: + Stable on amd64 wrt bug #351756 + + 16 Dec 2010; Justin Lecher scala-3.3.18-r1.ebuild: + Removal of fortran.eclass, #348851 + + 15 Jun 2010; Justin Lecher scala-3.3.18-r1.ebuild: + keyworded for linux prefix + +*scala-3.3.18-r1 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher -scala-3.3.18.ebuild, + +scala-3.3.18-r1.ebuild: + Necessary bump + +*scala-3.3.18 (04 Feb 2010) + + 04 Feb 2010; Justin Lecher (jlec) +scala-3.3.18.ebuild, + +files/Makefile.am, +files/configure.ac, +metadata.xml: + scala splitted of from ccp4 diff --git a/sci-chemistry/sfcheck/ChangeLog b/sci-chemistry/sfcheck/ChangeLog deleted file mode 100644 index 32183564..00000000 --- a/sci-chemistry/sfcheck/ChangeLog +++ /dev/null @@ -1,57 +0,0 @@ -# ChangeLog for sci-chemistry/sfcheck -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/sfcheck/ChangeLog,v 1.13 2013/06/19 04:28:54 bicatali Exp $ - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - sci-chemistry only - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 19 Oct 2012; Justin Lecher sfcheck-7.03.18-r1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher sfcheck-7.03.18-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher sfcheck-7.03.18-r1.ebuild: - Added fortran-2.eclass support - - 18 Jan 2011; Thomas Kahle sfcheck-7.03.18-r1.ebuild: - x86 stable per bug 351754 - - 16 Jan 2011; Kacper Kowalik - sfcheck-7.03.18-r1.ebuild: - marked ~ppc wrt #303931 - - 16 Jan 2011; Markos Chandras sfcheck-7.03.18-r1.ebuild: - Stable on amd64 wrt bug #351754 - - 15 Jan 2011; Justin Lecher -sfcheck-7.03.17.ebuild: - Removed old - -*sfcheck-7.03.18-r1 (15 Jun 2010) - - 15 Jun 2010; Justin Lecher -sfcheck-7.03.18.ebuild, - +sfcheck-7.03.18-r1.ebuild: - Necessary bump - -*sfcheck-7.03.18 (12 Mar 2010) - - 12 Mar 2010; Justin Lecher - +sfcheck-7.03.18.ebuild: - Version Bump - -*sfcheck-7.03.17 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher - +files/7.03.17-ldflags.patch, +sfcheck-7.03.17.ebuild, +metadata.xml: - Splitted sfcheck from ccp4 - -*sfcheck-7.03.16 (22 Dec 2009) - - 22 Dec 2009; Justin Lecher - +files/7.03.16-ldflags.patch, +sfcheck-7.03.16.ebuild, +metadata.xml: - Initial commit diff --git a/sci-chemistry/sfcheck/ChangeLog-2015 b/sci-chemistry/sfcheck/ChangeLog-2015 new file mode 100644 index 00000000..32183564 --- /dev/null +++ b/sci-chemistry/sfcheck/ChangeLog-2015 @@ -0,0 +1,57 @@ +# ChangeLog for sci-chemistry/sfcheck +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/sfcheck/ChangeLog,v 1.13 2013/06/19 04:28:54 bicatali Exp $ + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + sci-chemistry only + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 19 Oct 2012; Justin Lecher sfcheck-7.03.18-r1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher sfcheck-7.03.18-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher sfcheck-7.03.18-r1.ebuild: + Added fortran-2.eclass support + + 18 Jan 2011; Thomas Kahle sfcheck-7.03.18-r1.ebuild: + x86 stable per bug 351754 + + 16 Jan 2011; Kacper Kowalik + sfcheck-7.03.18-r1.ebuild: + marked ~ppc wrt #303931 + + 16 Jan 2011; Markos Chandras sfcheck-7.03.18-r1.ebuild: + Stable on amd64 wrt bug #351754 + + 15 Jan 2011; Justin Lecher -sfcheck-7.03.17.ebuild: + Removed old + +*sfcheck-7.03.18-r1 (15 Jun 2010) + + 15 Jun 2010; Justin Lecher -sfcheck-7.03.18.ebuild, + +sfcheck-7.03.18-r1.ebuild: + Necessary bump + +*sfcheck-7.03.18 (12 Mar 2010) + + 12 Mar 2010; Justin Lecher + +sfcheck-7.03.18.ebuild: + Version Bump + +*sfcheck-7.03.17 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher + +files/7.03.17-ldflags.patch, +sfcheck-7.03.17.ebuild, +metadata.xml: + Splitted sfcheck from ccp4 + +*sfcheck-7.03.16 (22 Dec 2009) + + 22 Dec 2009; Justin Lecher + +files/7.03.16-ldflags.patch, +sfcheck-7.03.16.ebuild, +metadata.xml: + Initial commit diff --git a/sci-chemistry/shelx/ChangeLog b/sci-chemistry/shelx/ChangeLog deleted file mode 100644 index 530e02f6..00000000 --- a/sci-chemistry/shelx/ChangeLog +++ /dev/null @@ -1,117 +0,0 @@ -# ChangeLog for sci-chemistry/shelx -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/shelx/ChangeLog,v 1.28 2015/04/07 14:39:24 jlec Exp $ - - 05 Mar 2015; Justin Lecher metadata.xml: - Drop unused local USE - -*shelx-20141228 (05 Mar 2015) - - 05 Mar 2015; Justin Lecher +shelx-20141228.ebuild, - -shelx-20140326.ebuild: - Version Bump - - 05 Mar 2015; Justin Lecher -shelx-20060317-r1.ebuild, - -shelx-20060317-r2.ebuild: - Drop old; stable latest version - -*shelx-20140326 (19 May 2014) - - 19 May 2014; Justin Lecher +shelx-20140326.ebuild: - Version Bump - -*shelx-20060317-r2 (19 May 2014) - - 19 May 2014; Justin Lecher +shelx-20060317-r2.ebuild, - metadata.xml: - Bump to EAPI=5, add missing die, add prefix support - - 19 Oct 2012; Justin Lecher shelx-20060317-r1.ebuild, - metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher shelx-20060317-r1.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher shelx-20060317-r1.ebuild: - Added fortran-2.eclass support - - 16 Jan 2011; Kacper Kowalik - shelx-20060317-r1.ebuild: - ppc stable wrt #325943 - - 16 Dec 2010; Justin Lecher shelx-20060317-r1.ebuild: - Removal of fortran.eclass, #348851 - - 20 Aug 2010; Donnie Berkholz ; - shelx-20060317-r1.ebuild: - OpenMP: Handle full specifier for gfortran correctly so that the default, - unset compiler works. - - 28 Jun 2010; Justin Lecher -shelx-20060317.ebuild, - shelx-20060317-r1.ebuild: - Removed old, stabled for x86 & amd64, tested it in action routinely at - work, permission granted in #325943 - - 07 Jul 2009; Diego E. Pettenò - shelx-20060317-r1.ebuild: - Use elog for fetch error. - - 29 May 2009; Donnie Berkholz ; - shelx-20060317-r1.ebuild: - Keyword ~amd64. - - 07 Nov 2008; Donnie Berkholz ; - shelx-20060317.ebuild, shelx-20060317-r1.ebuild: - Fix quoting. - -*shelx-20060317-r1 (07 Nov 2008) - - 07 Nov 2008; Donnie Berkholz ; - +shelx-20060317-r1.ebuild: - Add OpenMP support. - - 06 Aug 2008; Ulrich Mueller metadata.xml: - Add USE flag description to metadata wrt GLEP 56. - - 22 Jun 2007; Donnie Berkholz ; - files/20060317-autotool.patch: - (#163574) Build fix; check for Fortran77 compiler in autotools stuff (fix - from dawe). - - 15 Mar 2007; Danny van Dyk shelx-20060317.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 12 Oct 2006; Donnie Berkholz ; - shelx-20060317.ebuild: - Stable x86. - - 12 Oct 2006; Donnie Berkholz ; - shelx-20060317.ebuild: - Keyword ~ppc. - - 12 Oct 2006; Donnie Berkholz ; - +files/20060317-gfortran.patch, shelx-20060317.ebuild: - Add a patch to allow compilation with gfortran. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 17 Jun 2006; Donnie Berkholz ; - shelx-20060317.ebuild: - (#75384) Add the dosformat USE flag, useful for mixed Linux/Windows - environments. - -*shelx-20060317 (05 Jun 2006) - - 05 Jun 2006; Donnie Berkholz ; - +files/20060317-autotool.patch, +metadata.xml, +shelx-20060317.ebuild: - New program for X-ray crystallographic structure determination. diff --git a/sci-chemistry/shelx/ChangeLog-2015 b/sci-chemistry/shelx/ChangeLog-2015 new file mode 100644 index 00000000..530e02f6 --- /dev/null +++ b/sci-chemistry/shelx/ChangeLog-2015 @@ -0,0 +1,117 @@ +# ChangeLog for sci-chemistry/shelx +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/shelx/ChangeLog,v 1.28 2015/04/07 14:39:24 jlec Exp $ + + 05 Mar 2015; Justin Lecher metadata.xml: + Drop unused local USE + +*shelx-20141228 (05 Mar 2015) + + 05 Mar 2015; Justin Lecher +shelx-20141228.ebuild, + -shelx-20140326.ebuild: + Version Bump + + 05 Mar 2015; Justin Lecher -shelx-20060317-r1.ebuild, + -shelx-20060317-r2.ebuild: + Drop old; stable latest version + +*shelx-20140326 (19 May 2014) + + 19 May 2014; Justin Lecher +shelx-20140326.ebuild: + Version Bump + +*shelx-20060317-r2 (19 May 2014) + + 19 May 2014; Justin Lecher +shelx-20060317-r2.ebuild, + metadata.xml: + Bump to EAPI=5, add missing die, add prefix support + + 19 Oct 2012; Justin Lecher shelx-20060317-r1.ebuild, + metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher shelx-20060317-r1.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher shelx-20060317-r1.ebuild: + Added fortran-2.eclass support + + 16 Jan 2011; Kacper Kowalik + shelx-20060317-r1.ebuild: + ppc stable wrt #325943 + + 16 Dec 2010; Justin Lecher shelx-20060317-r1.ebuild: + Removal of fortran.eclass, #348851 + + 20 Aug 2010; Donnie Berkholz ; + shelx-20060317-r1.ebuild: + OpenMP: Handle full specifier for gfortran correctly so that the default, + unset compiler works. + + 28 Jun 2010; Justin Lecher -shelx-20060317.ebuild, + shelx-20060317-r1.ebuild: + Removed old, stabled for x86 & amd64, tested it in action routinely at + work, permission granted in #325943 + + 07 Jul 2009; Diego E. Pettenò + shelx-20060317-r1.ebuild: + Use elog for fetch error. + + 29 May 2009; Donnie Berkholz ; + shelx-20060317-r1.ebuild: + Keyword ~amd64. + + 07 Nov 2008; Donnie Berkholz ; + shelx-20060317.ebuild, shelx-20060317-r1.ebuild: + Fix quoting. + +*shelx-20060317-r1 (07 Nov 2008) + + 07 Nov 2008; Donnie Berkholz ; + +shelx-20060317-r1.ebuild: + Add OpenMP support. + + 06 Aug 2008; Ulrich Mueller metadata.xml: + Add USE flag description to metadata wrt GLEP 56. + + 22 Jun 2007; Donnie Berkholz ; + files/20060317-autotool.patch: + (#163574) Build fix; check for Fortran77 compiler in autotools stuff (fix + from dawe). + + 15 Mar 2007; Danny van Dyk shelx-20060317.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 12 Oct 2006; Donnie Berkholz ; + shelx-20060317.ebuild: + Stable x86. + + 12 Oct 2006; Donnie Berkholz ; + shelx-20060317.ebuild: + Keyword ~ppc. + + 12 Oct 2006; Donnie Berkholz ; + +files/20060317-gfortran.patch, shelx-20060317.ebuild: + Add a patch to allow compilation with gfortran. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 17 Jun 2006; Donnie Berkholz ; + shelx-20060317.ebuild: + (#75384) Add the dosformat USE flag, useful for mixed Linux/Windows + environments. + +*shelx-20060317 (05 Jun 2006) + + 05 Jun 2006; Donnie Berkholz ; + +files/20060317-autotool.patch, +metadata.xml, +shelx-20060317.ebuild: + New program for X-ray crystallographic structure determination. diff --git a/sci-chemistry/solve-resolve-bin/ChangeLog b/sci-chemistry/solve-resolve-bin/ChangeLog deleted file mode 100644 index 073bed05..00000000 --- a/sci-chemistry/solve-resolve-bin/ChangeLog +++ /dev/null @@ -1,25 +0,0 @@ -# ChangeLog for sci-chemistry/solve-resolve-bin -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/solve-resolve-bin/ChangeLog,v 1.5 2015/01/09 08:11:22 jlec Exp $ - - 09 Jan 2015; Justin Lecher solve-resolve-bin-2.13.ebuild, - metadata.xml: - Bump EAPI; do some QA - - 03 Feb 2012; Justin Lecher solve-resolve-bin-2.13.ebuild, - metadata.xml: - Correct QA_* , stable x86 tested by me - - 06 Oct 2011; Tony Vroon solve-resolve-bin-2.13.ebuild: - Marked stable on AMD64 without rigorous testing as it is part of a tangled - web of intricate dependencies for unfetchable/untestable packages. - - 23 Feb 2011; Justin Lecher solve-resolve-bin-2.13.ebuild: - QA: Double // and missing die - -*solve-resolve-bin-2.13 (02 Feb 2010) - - 02 Feb 2010; Justin Lecher (jlec) - +solve-resolve-bin-2.13.ebuild, +metadata.xml: - Automated crystallographic structure solution for MIR, SAD, and MAD - diff --git a/sci-chemistry/solve-resolve-bin/ChangeLog-2015 b/sci-chemistry/solve-resolve-bin/ChangeLog-2015 new file mode 100644 index 00000000..073bed05 --- /dev/null +++ b/sci-chemistry/solve-resolve-bin/ChangeLog-2015 @@ -0,0 +1,25 @@ +# ChangeLog for sci-chemistry/solve-resolve-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/solve-resolve-bin/ChangeLog,v 1.5 2015/01/09 08:11:22 jlec Exp $ + + 09 Jan 2015; Justin Lecher solve-resolve-bin-2.13.ebuild, + metadata.xml: + Bump EAPI; do some QA + + 03 Feb 2012; Justin Lecher solve-resolve-bin-2.13.ebuild, + metadata.xml: + Correct QA_* , stable x86 tested by me + + 06 Oct 2011; Tony Vroon solve-resolve-bin-2.13.ebuild: + Marked stable on AMD64 without rigorous testing as it is part of a tangled + web of intricate dependencies for unfetchable/untestable packages. + + 23 Feb 2011; Justin Lecher solve-resolve-bin-2.13.ebuild: + QA: Double // and missing die + +*solve-resolve-bin-2.13 (02 Feb 2010) + + 02 Feb 2010; Justin Lecher (jlec) + +solve-resolve-bin-2.13.ebuild, +metadata.xml: + Automated crystallographic structure solution for MIR, SAD, and MAD + diff --git a/sci-chemistry/sparky/ChangeLog b/sci-chemistry/sparky/ChangeLog deleted file mode 100644 index c704c6fa..00000000 --- a/sci-chemistry/sparky/ChangeLog +++ /dev/null @@ -1,89 +0,0 @@ -# ChangeLog for sci-chemistry/sparky -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/sparky/ChangeLog,v 1.21 2015/03/20 15:29:21 jlec Exp $ - - 20 Mar 2015; Justin Lecher -sparky-3.115.ebuild, - sparky-3.115-r1.ebuild: - Fix tcl/tk slotting; drop old - - 11 Nov 2013; Justin Lecher sparky-3.115-r1.ebuild: - It also works with python 2.7 - - 01 Aug 2013; Justin Lecher sparky-3.115-r1.ebuild: - Doesn't work with py2.7 - -*sparky-3.115-r1 (18 Jul 2013) - - 18 Jul 2013; Justin Lecher +sparky-3.115-r1.ebuild, - +files/3.115-wrapper-r1.patch, files/fix-install.patch, metadata.xml: - Bump to new python eclass - - 29 May 2012; Justin Lecher sparky-3.115.ebuild, - metadata.xml: - Fix symlink creation in EAPI=4 - - 07 Mar 2010; Justin Lecher (jlec) sparky-3.115.ebuild, - files/fix-install.patch: - Prefix cleaning, keyworded for *-linux, tested by me - - 26 Feb 2010; Justin Lecher (jlec) sparky-3.115.ebuild: - python_mod_compile arguments fixed - -*sparky-3.115 (13 Feb 2010) - - 13 Feb 2010; Justin Lecher (jlec) - +files/3.115-fpic.patch, +files/3.115-ldflags.patch, - +files/3.115-makefile.patch, +files/3.115-paths.patch, - -sparky-3.113.ebuild, +files/3.115-wrapper.patch, +sparky-3.115.ebuild, - metadata.xml: - version bump, removed fixed tcl/tk and python version, multilib awareness - added, EPREFIX ready, keyworded for ~amd64, bug 267355 299348 - - 18 Sep 2009; Petteri Räty sparky-3.113.ebuild: - Migrate to EAPI 2 in order to remove built_with_use call. - - 03 Jun 2008; Michael Sterrett sparky-3.113.ebuild: - remove reference to app-shells/csh which has been removed - - 06 Feb 2008; Donnie Berkholz ; sparky-3.113.ebuild: - Fix minor syntax issues. - - 06 Feb 2008; Donnie Berkholz ; -sparky-3.111.ebuild: - (#208859) Drop old version so python 2.3 can leave the tree. - -*sparky-3.113 (06 Jun 2007) - - 06 Jun 2007; Donnie Berkholz ; +sparky-3.113.ebuild: - (#164813) Bump. Works with Python 2.4, cleans out Python bytecode on - uninstallation (Jakub Moc), makes sure python was built with Tk. Keyword - ~ppc while I'm at it. - - 15 Mar 2007; Danny van Dyk sparky-3.111.ebuild: - QA: Removed illegal use of ${ROOT}. Bug #168043 - - 22 Feb 2007; Piotr Jaroszyński sparky-3.111.ebuild: - Fix SRC_URI. Transition to Manifest2. - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 18 Dec 2005; Donnie Berkholz ; sparky-3.111.ebuild: - Prefer RESTRICT=mirror over nomirror, as portage code does. - - 18 Dec 2005; Donnie Berkholz ; sparky-3.111.ebuild: - We can't mirror this. - -*sparky-3.111 (18 Dec 2005) - - 18 Dec 2005; Donnie Berkholz ; - +files/fix-install.patch, +metadata.xml, +sparky-3.111.ebuild: - A new graphical NMR assignment and integration program for proteins, nucleic - acids, and other polymers. Very strange build system; takes lots of hacking - and tweaking to get working. Doesn't work with python-2.4, only 2.3. diff --git a/sci-chemistry/sparky/ChangeLog-2015 b/sci-chemistry/sparky/ChangeLog-2015 new file mode 100644 index 00000000..c704c6fa --- /dev/null +++ b/sci-chemistry/sparky/ChangeLog-2015 @@ -0,0 +1,89 @@ +# ChangeLog for sci-chemistry/sparky +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/sparky/ChangeLog,v 1.21 2015/03/20 15:29:21 jlec Exp $ + + 20 Mar 2015; Justin Lecher -sparky-3.115.ebuild, + sparky-3.115-r1.ebuild: + Fix tcl/tk slotting; drop old + + 11 Nov 2013; Justin Lecher sparky-3.115-r1.ebuild: + It also works with python 2.7 + + 01 Aug 2013; Justin Lecher sparky-3.115-r1.ebuild: + Doesn't work with py2.7 + +*sparky-3.115-r1 (18 Jul 2013) + + 18 Jul 2013; Justin Lecher +sparky-3.115-r1.ebuild, + +files/3.115-wrapper-r1.patch, files/fix-install.patch, metadata.xml: + Bump to new python eclass + + 29 May 2012; Justin Lecher sparky-3.115.ebuild, + metadata.xml: + Fix symlink creation in EAPI=4 + + 07 Mar 2010; Justin Lecher (jlec) sparky-3.115.ebuild, + files/fix-install.patch: + Prefix cleaning, keyworded for *-linux, tested by me + + 26 Feb 2010; Justin Lecher (jlec) sparky-3.115.ebuild: + python_mod_compile arguments fixed + +*sparky-3.115 (13 Feb 2010) + + 13 Feb 2010; Justin Lecher (jlec) + +files/3.115-fpic.patch, +files/3.115-ldflags.patch, + +files/3.115-makefile.patch, +files/3.115-paths.patch, + -sparky-3.113.ebuild, +files/3.115-wrapper.patch, +sparky-3.115.ebuild, + metadata.xml: + version bump, removed fixed tcl/tk and python version, multilib awareness + added, EPREFIX ready, keyworded for ~amd64, bug 267355 299348 + + 18 Sep 2009; Petteri Räty sparky-3.113.ebuild: + Migrate to EAPI 2 in order to remove built_with_use call. + + 03 Jun 2008; Michael Sterrett sparky-3.113.ebuild: + remove reference to app-shells/csh which has been removed + + 06 Feb 2008; Donnie Berkholz ; sparky-3.113.ebuild: + Fix minor syntax issues. + + 06 Feb 2008; Donnie Berkholz ; -sparky-3.111.ebuild: + (#208859) Drop old version so python 2.3 can leave the tree. + +*sparky-3.113 (06 Jun 2007) + + 06 Jun 2007; Donnie Berkholz ; +sparky-3.113.ebuild: + (#164813) Bump. Works with Python 2.4, cleans out Python bytecode on + uninstallation (Jakub Moc), makes sure python was built with Tk. Keyword + ~ppc while I'm at it. + + 15 Mar 2007; Danny van Dyk sparky-3.111.ebuild: + QA: Removed illegal use of ${ROOT}. Bug #168043 + + 22 Feb 2007; Piotr Jaroszyński sparky-3.111.ebuild: + Fix SRC_URI. Transition to Manifest2. + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 18 Dec 2005; Donnie Berkholz ; sparky-3.111.ebuild: + Prefer RESTRICT=mirror over nomirror, as portage code does. + + 18 Dec 2005; Donnie Berkholz ; sparky-3.111.ebuild: + We can't mirror this. + +*sparky-3.111 (18 Dec 2005) + + 18 Dec 2005; Donnie Berkholz ; + +files/fix-install.patch, +metadata.xml, +sparky-3.111.ebuild: + A new graphical NMR assignment and integration program for proteins, nucleic + acids, and other polymers. Very strange build system; takes lots of hacking + and tweaking to get working. Doesn't work with python-2.4, only 2.3. diff --git a/sci-chemistry/suitename/ChangeLog b/sci-chemistry/suitename/ChangeLog deleted file mode 100644 index 2dad7fc4..00000000 --- a/sci-chemistry/suitename/ChangeLog +++ /dev/null @@ -1,17 +0,0 @@ -# ChangeLog for sci-chemistry/suitename -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/ChangeLog,v 1.3 2012/07/23 09:01:43 jlec Exp $ - - 23 Jul 2012; Justin Lecher suitename-0.3.070628.ebuild: - Change order of sed, #427476 - - 26 Jun 2011; Justin Lecher suitename-0.3.070628.ebuild, - metadata.xml: - Straight out QA issues - -*suitename-0.3.070628 (14 Jul 2010) - - 14 Jul 2010; Justin Lecher +suitename-0.3.070628.ebuild, - +metadata.xml: - New addition - diff --git a/sci-chemistry/suitename/ChangeLog-2015 b/sci-chemistry/suitename/ChangeLog-2015 new file mode 100644 index 00000000..2dad7fc4 --- /dev/null +++ b/sci-chemistry/suitename/ChangeLog-2015 @@ -0,0 +1,17 @@ +# ChangeLog for sci-chemistry/suitename +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/ChangeLog,v 1.3 2012/07/23 09:01:43 jlec Exp $ + + 23 Jul 2012; Justin Lecher suitename-0.3.070628.ebuild: + Change order of sed, #427476 + + 26 Jun 2011; Justin Lecher suitename-0.3.070628.ebuild, + metadata.xml: + Straight out QA issues + +*suitename-0.3.070628 (14 Jul 2010) + + 14 Jul 2010; Justin Lecher +suitename-0.3.070628.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/surf/ChangeLog b/sci-chemistry/surf/ChangeLog deleted file mode 100644 index 86f36e38..00000000 --- a/sci-chemistry/surf/ChangeLog +++ /dev/null @@ -1,27 +0,0 @@ -# ChangeLog for sci-chemistry/surf -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/surf/ChangeLog,v 1.7 2013/04/11 18:33:54 ulm Exp $ - - 11 Apr 2013; Ulrich Müller surf-1.0.ebuild: - Fix LICENSE, see README file. - - 08 May 2012; Christoph Junghans surf-1.0.ebuild: - added ~x86-macos keyword - - 10 Jun 2011; Justin Lecher surf-1.0.ebuild: - Block www-client/surf due to collision on /usr/bin/surf, #371037 - - 24 Mar 2011; Justin Lecher surf-1.0.ebuild: - Added missing DEPEND on sys-apps/ed, #360187 - - 22 Mar 2011; Kacper Kowalik surf-1.0.ebuild: - Marked ~ppc wrt #359945. Fix quotes. - - 22 Mar 2011; Justin Lecher surf-1.0.ebuild: - Added missing DEPEND=x11-misc/makedepend, thanks xarthisius - -*surf-1.0 (22 Mar 2011) - - 22 Mar 2011; Justin Lecher +surf-1.0.ebuild, +metadata.xml: - New addition - diff --git a/sci-chemistry/surf/ChangeLog-2015 b/sci-chemistry/surf/ChangeLog-2015 new file mode 100644 index 00000000..86f36e38 --- /dev/null +++ b/sci-chemistry/surf/ChangeLog-2015 @@ -0,0 +1,27 @@ +# ChangeLog for sci-chemistry/surf +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/surf/ChangeLog,v 1.7 2013/04/11 18:33:54 ulm Exp $ + + 11 Apr 2013; Ulrich Müller surf-1.0.ebuild: + Fix LICENSE, see README file. + + 08 May 2012; Christoph Junghans surf-1.0.ebuild: + added ~x86-macos keyword + + 10 Jun 2011; Justin Lecher surf-1.0.ebuild: + Block www-client/surf due to collision on /usr/bin/surf, #371037 + + 24 Mar 2011; Justin Lecher surf-1.0.ebuild: + Added missing DEPEND on sys-apps/ed, #360187 + + 22 Mar 2011; Kacper Kowalik surf-1.0.ebuild: + Marked ~ppc wrt #359945. Fix quotes. + + 22 Mar 2011; Justin Lecher surf-1.0.ebuild: + Added missing DEPEND=x11-misc/makedepend, thanks xarthisius + +*surf-1.0 (22 Mar 2011) + + 22 Mar 2011; Justin Lecher +surf-1.0.ebuild, +metadata.xml: + New addition + diff --git a/sci-chemistry/theseus/ChangeLog b/sci-chemistry/theseus/ChangeLog deleted file mode 100644 index 4e938041..00000000 --- a/sci-chemistry/theseus/ChangeLog +++ /dev/null @@ -1,56 +0,0 @@ -# ChangeLog for sci-chemistry/theseus -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.11 2015/07/03 13:08:20 jlec Exp $ - -*theseus-3.3.0 (03 Jul 2015) - - 03 Jul 2015; Justin Lecher +theseus-3.3.0.ebuild, - -theseus-1.6.2-r1.ebuild, -theseus-2.0.1-r1.ebuild, -theseus-2.0.3.ebuild, - theseus-2.0.6.ebuild, theseus-3.0.0.ebuild: - Version Bump; drop old - -*theseus-3.0.0 (13 Nov 2014) - - 13 Nov 2014; Justin Lecher +theseus-3.0.0.ebuild: - Version Bump - -*theseus-2.0.6 (06 Jun 2013) - - 06 Jun 2013; Justin Lecher +theseus-2.0.6.ebuild: - Version Bump; fix double prefix - -*theseus-2.0.3 (29 May 2013) - - 29 May 2013; Justin Lecher +theseus-2.0.3.ebuild: - Version Bump - -*theseus-2.0.1-r1 (24 Apr 2013) - - 24 Apr 2013; Justin Lecher -theseus-2.0.1.ebuild, - +theseus-2.0.1-r1.ebuild: - The paths in the align script need to be absolute - -*theseus-2.0.1 (09 Apr 2013) - - 09 Apr 2013; Justin Lecher +theseus-2.0.1.ebuild, - metadata.xml: - Version Bump - - 04 May 2012; Jeff Horelick theseus-1.6.2-r1.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 30 Apr 2012; Tomáš Chvátal metadata.xml, - theseus-1.6.2-r1.ebuild: - Fix fubared metadata.xml - -*theseus-1.6.2-r1 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher -theseus-1.6.2.ebuild, - +theseus-1.6.2-r1.ebuild: - Fix Path for gentoo - -*theseus-1.6.2 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +theseus-1.6.2.ebuild, - +metadata.xml: - New addition, written by me diff --git a/sci-chemistry/theseus/ChangeLog-2015 b/sci-chemistry/theseus/ChangeLog-2015 new file mode 100644 index 00000000..4e938041 --- /dev/null +++ b/sci-chemistry/theseus/ChangeLog-2015 @@ -0,0 +1,56 @@ +# ChangeLog for sci-chemistry/theseus +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.11 2015/07/03 13:08:20 jlec Exp $ + +*theseus-3.3.0 (03 Jul 2015) + + 03 Jul 2015; Justin Lecher +theseus-3.3.0.ebuild, + -theseus-1.6.2-r1.ebuild, -theseus-2.0.1-r1.ebuild, -theseus-2.0.3.ebuild, + theseus-2.0.6.ebuild, theseus-3.0.0.ebuild: + Version Bump; drop old + +*theseus-3.0.0 (13 Nov 2014) + + 13 Nov 2014; Justin Lecher +theseus-3.0.0.ebuild: + Version Bump + +*theseus-2.0.6 (06 Jun 2013) + + 06 Jun 2013; Justin Lecher +theseus-2.0.6.ebuild: + Version Bump; fix double prefix + +*theseus-2.0.3 (29 May 2013) + + 29 May 2013; Justin Lecher +theseus-2.0.3.ebuild: + Version Bump + +*theseus-2.0.1-r1 (24 Apr 2013) + + 24 Apr 2013; Justin Lecher -theseus-2.0.1.ebuild, + +theseus-2.0.1-r1.ebuild: + The paths in the align script need to be absolute + +*theseus-2.0.1 (09 Apr 2013) + + 09 Apr 2013; Justin Lecher +theseus-2.0.1.ebuild, + metadata.xml: + Version Bump + + 04 May 2012; Jeff Horelick theseus-1.6.2-r1.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 30 Apr 2012; Tomáš Chvátal metadata.xml, + theseus-1.6.2-r1.ebuild: + Fix fubared metadata.xml + +*theseus-1.6.2-r1 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher -theseus-1.6.2.ebuild, + +theseus-1.6.2-r1.ebuild: + Fix Path for gentoo + +*theseus-1.6.2 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +theseus-1.6.2.ebuild, + +metadata.xml: + New addition, written by me diff --git a/sci-chemistry/threeV/ChangeLog b/sci-chemistry/threeV/ChangeLog deleted file mode 100644 index 7f936a1a..00000000 --- a/sci-chemistry/threeV/ChangeLog +++ /dev/null @@ -1,13 +0,0 @@ -# ChangeLog for sci-chemistry/threeV -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/threeV/ChangeLog,v 1.2 2010/10/30 14:59:43 jlec Exp $ - - 30 Oct 2010; Justin Lecher threeV-1.2.ebuild: - Keyworded for ~-linux prefix - -*threeV-1.2 (30 Oct 2010) - - 30 Oct 2010; Justin Lecher +files/1.2-gentoo.patch, - +threeV-1.2.ebuild, +metadata.xml: - New addition - diff --git a/sci-chemistry/threeV/ChangeLog-2015 b/sci-chemistry/threeV/ChangeLog-2015 new file mode 100644 index 00000000..7f936a1a --- /dev/null +++ b/sci-chemistry/threeV/ChangeLog-2015 @@ -0,0 +1,13 @@ +# ChangeLog for sci-chemistry/threeV +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/threeV/ChangeLog,v 1.2 2010/10/30 14:59:43 jlec Exp $ + + 30 Oct 2010; Justin Lecher threeV-1.2.ebuild: + Keyworded for ~-linux prefix + +*threeV-1.2 (30 Oct 2010) + + 30 Oct 2010; Justin Lecher +files/1.2-gentoo.patch, + +threeV-1.2.ebuild, +metadata.xml: + New addition + diff --git a/sci-chemistry/tinker/ChangeLog b/sci-chemistry/tinker/ChangeLog deleted file mode 100644 index bc50f1ca..00000000 --- a/sci-chemistry/tinker/ChangeLog +++ /dev/null @@ -1,156 +0,0 @@ -# ChangeLog for sci-chemistry/tinker -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.34 2015/06/21 10:42:07 jlec Exp $ - -*tinker-7.1.2 (21 Jun 2015) - - 21 Jun 2015; Justin Lecher +files/7.1.2-openmp.patch, - +files/tinker-7.1.2-build.patch, +tinker-7.1.2.ebuild, -tinker-5.1.09.ebuild, - -tinker-6.ebuild: - Version Bump, bug #390165, bug #521292; drop old, obsolets bug #478596, bug - #552712 - - 19 Oct 2012; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.ebuild, metadata.xml: - Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the - updated fortran-2.eclass - - 21 Jun 2011; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.ebuild: - Add dependency on virtual/fortran - - 21 Jun 2011; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.ebuild: - Added fortran-2.eclass support - - 17 Dec 2010; Justin Lecher tinker-6.ebuild: - Fix for fortran.eclass removal - - 16 Dec 2010; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.ebuild: - Removal of fortran.eclass, #348851 - -*tinker-6 (02 Dec 2010) - - 02 Dec 2010; Justin Lecher +files/6-openmp.patch, - +tinker-6.ebuild, -tinker-6.0.ebuild: - Fixes for upstreams changes - - 02 Dec 2010; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.0.ebuild: - Remove last bits of apbs - - 28 Oct 2010; Justin Lecher tinker-5.1.09.ebuild, - tinker-6.0.ebuild: - Removed apbs support - -*tinker-5.1.09 (03 Oct 2010) - - 03 Oct 2010; Justin Lecher +files/5.1.09-Makefile.patch, - -tinker-5.1.08.ebuild, +tinker-5.1.09.ebuild: - Version bump, fixes 335197 & 337074 - - 03 Oct 2010; Justin Lecher tinker-5.1.08.ebuild, - tinker-6.0.ebuild: - Removed . in DESCRIPTION - - 21 Jun 2010; Justin Lecher tinker-5.1.08.ebuild, - tinker-6.0.ebuild: - Fixed *DEPENDS, #324969 - -*tinker-6.0 (16 Jun 2010) -*tinker-5.1.08 (16 Jun 2010) - - 16 Jun 2010; Justin Lecher -tinker-5.1.05.ebuild, - +tinker-5.1.08.ebuild, +tinker-6.0.ebuild: - Version Bump, #322929 - - 09 Apr 2010; Justin Lecher tinker-5.1.05.ebuild: - Blocking dev-util/diffuse per 314129 & 279018 - -*tinker-5.1.05 (13 Mar 2010) - - 13 Mar 2010; Justin Lecher (jlec) -tinker-5.1.04.ebuild, - +tinker-5.1.05.ebuild: - Version Bump - -*tinker-5.1.04 (26 Feb 2010) - - 26 Feb 2010; Justin Lecher (jlec) -tinker-5.1.03.ebuild, - +tinker-5.1.04.ebuild: - Version Bump - -*tinker-5.1.03 (24 Feb 2010) - - 24 Feb 2010; Alexey Shvetsov -tinker-5.1.02.ebuild, - +tinker-5.1.03.ebuild: - Revbump tinker as asked by jlec. fix bug #306691 - -*tinker-5.1.02 (19 Feb 2010) - - 19 Feb 2010; Justin Lecher (jlec) - -tinker-5.1.01.ebuild, +tinker-5.1.02.ebuild: - Version Bump - - 17 Feb 2010; Justin Lecher (jlec) tinker-5.1.01.ebuild: - keyworded for x86-linux - -*tinker-5.1.01 (17 Feb 2010) - - 17 Feb 2010; Justin Lecher (jlec) -tinker-5.1.ebuild, - +tinker-5.1.01.ebuild: - Moved to new upstream release and naming policy, bug 305007 - -*tinker-5.1 (13 Feb 2010) - - 13 Feb 2010; Justin Lecher (jlec) -tinker-4.2-r1.ebuild, - +tinker-5.1.ebuild: - Version Bump and old version removed, parallel build and die when build failed, - bug 296888, 275533, 263006 & 241180 - - 14 Dec 2009; Diego E. Pettenò - tinker-4.2-r1.ebuild: - Add die clauses to installation rules. - - 26 Jul 2009; Andrey Grozin tinker-4.2-r1.ebuild: - Blocking dev-util/diffuse (file collision, bug #279018) - - 06 Nov 2008; Donnie Berkholz ; tinker-4.2-r1.ebuild: - (#245504) This ebuild was wrongly updated for the blackdown removal, which - broke it. Fix that. - - 03 Jun 2008; Michael Sterrett tinker-4.2-r1.ebuild: - remove reference to dev-java/blackdown-java3d-bin which has been removed - - 31 Jan 2008; Fabian Groffen ChangeLog: - Dropped ppc-macos keyword, see you in prefix - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - -*tinker-4.2-r1 (21 Jun 2006) - - 21 Jun 2006; Donnie Berkholz ; -tinker-4.2.ebuild, - +tinker-4.2-r1.ebuild: - (#119142) Make Java frontend work (Josh Nichols). - - 21 Jun 2006; Donnie Berkholz ; tinker-4.2.ebuild: - Port to gcc4. - - 03 Dec 2005; Donnie Berkholz ; tinker-4.2.ebuild: - Note that tinker script has hardcoded blackdown in it. This is needed - because java-config's exit codes return 0, even on failure. - -*tinker-4.2 (03 Dec 2005) - - 03 Dec 2005; Donnie Berkholz ; +metadata.xml, - +tinker-4.2.ebuild: - (#35945) New molecular mechanics package. Heavily modified ebuild based on - that of Jeremy Warren . diff --git a/sci-chemistry/tinker/ChangeLog-2015 b/sci-chemistry/tinker/ChangeLog-2015 new file mode 100644 index 00000000..bc50f1ca --- /dev/null +++ b/sci-chemistry/tinker/ChangeLog-2015 @@ -0,0 +1,156 @@ +# ChangeLog for sci-chemistry/tinker +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.34 2015/06/21 10:42:07 jlec Exp $ + +*tinker-7.1.2 (21 Jun 2015) + + 21 Jun 2015; Justin Lecher +files/7.1.2-openmp.patch, + +files/tinker-7.1.2-build.patch, +tinker-7.1.2.ebuild, -tinker-5.1.09.ebuild, + -tinker-6.ebuild: + Version Bump, bug #390165, bug #521292; drop old, obsolets bug #478596, bug + #552712 + + 19 Oct 2012; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.ebuild, metadata.xml: + Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the + updated fortran-2.eclass + + 21 Jun 2011; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.ebuild: + Add dependency on virtual/fortran + + 21 Jun 2011; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.ebuild: + Added fortran-2.eclass support + + 17 Dec 2010; Justin Lecher tinker-6.ebuild: + Fix for fortran.eclass removal + + 16 Dec 2010; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.ebuild: + Removal of fortran.eclass, #348851 + +*tinker-6 (02 Dec 2010) + + 02 Dec 2010; Justin Lecher +files/6-openmp.patch, + +tinker-6.ebuild, -tinker-6.0.ebuild: + Fixes for upstreams changes + + 02 Dec 2010; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.0.ebuild: + Remove last bits of apbs + + 28 Oct 2010; Justin Lecher tinker-5.1.09.ebuild, + tinker-6.0.ebuild: + Removed apbs support + +*tinker-5.1.09 (03 Oct 2010) + + 03 Oct 2010; Justin Lecher +files/5.1.09-Makefile.patch, + -tinker-5.1.08.ebuild, +tinker-5.1.09.ebuild: + Version bump, fixes 335197 & 337074 + + 03 Oct 2010; Justin Lecher tinker-5.1.08.ebuild, + tinker-6.0.ebuild: + Removed . in DESCRIPTION + + 21 Jun 2010; Justin Lecher tinker-5.1.08.ebuild, + tinker-6.0.ebuild: + Fixed *DEPENDS, #324969 + +*tinker-6.0 (16 Jun 2010) +*tinker-5.1.08 (16 Jun 2010) + + 16 Jun 2010; Justin Lecher -tinker-5.1.05.ebuild, + +tinker-5.1.08.ebuild, +tinker-6.0.ebuild: + Version Bump, #322929 + + 09 Apr 2010; Justin Lecher tinker-5.1.05.ebuild: + Blocking dev-util/diffuse per 314129 & 279018 + +*tinker-5.1.05 (13 Mar 2010) + + 13 Mar 2010; Justin Lecher (jlec) -tinker-5.1.04.ebuild, + +tinker-5.1.05.ebuild: + Version Bump + +*tinker-5.1.04 (26 Feb 2010) + + 26 Feb 2010; Justin Lecher (jlec) -tinker-5.1.03.ebuild, + +tinker-5.1.04.ebuild: + Version Bump + +*tinker-5.1.03 (24 Feb 2010) + + 24 Feb 2010; Alexey Shvetsov -tinker-5.1.02.ebuild, + +tinker-5.1.03.ebuild: + Revbump tinker as asked by jlec. fix bug #306691 + +*tinker-5.1.02 (19 Feb 2010) + + 19 Feb 2010; Justin Lecher (jlec) + -tinker-5.1.01.ebuild, +tinker-5.1.02.ebuild: + Version Bump + + 17 Feb 2010; Justin Lecher (jlec) tinker-5.1.01.ebuild: + keyworded for x86-linux + +*tinker-5.1.01 (17 Feb 2010) + + 17 Feb 2010; Justin Lecher (jlec) -tinker-5.1.ebuild, + +tinker-5.1.01.ebuild: + Moved to new upstream release and naming policy, bug 305007 + +*tinker-5.1 (13 Feb 2010) + + 13 Feb 2010; Justin Lecher (jlec) -tinker-4.2-r1.ebuild, + +tinker-5.1.ebuild: + Version Bump and old version removed, parallel build and die when build failed, + bug 296888, 275533, 263006 & 241180 + + 14 Dec 2009; Diego E. Pettenò + tinker-4.2-r1.ebuild: + Add die clauses to installation rules. + + 26 Jul 2009; Andrey Grozin tinker-4.2-r1.ebuild: + Blocking dev-util/diffuse (file collision, bug #279018) + + 06 Nov 2008; Donnie Berkholz ; tinker-4.2-r1.ebuild: + (#245504) This ebuild was wrongly updated for the blackdown removal, which + broke it. Fix that. + + 03 Jun 2008; Michael Sterrett tinker-4.2-r1.ebuild: + remove reference to dev-java/blackdown-java3d-bin which has been removed + + 31 Jan 2008; Fabian Groffen ChangeLog: + Dropped ppc-macos keyword, see you in prefix + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + +*tinker-4.2-r1 (21 Jun 2006) + + 21 Jun 2006; Donnie Berkholz ; -tinker-4.2.ebuild, + +tinker-4.2-r1.ebuild: + (#119142) Make Java frontend work (Josh Nichols). + + 21 Jun 2006; Donnie Berkholz ; tinker-4.2.ebuild: + Port to gcc4. + + 03 Dec 2005; Donnie Berkholz ; tinker-4.2.ebuild: + Note that tinker script has hardcoded blackdown in it. This is needed + because java-config's exit codes return 0, even on failure. + +*tinker-4.2 (03 Dec 2005) + + 03 Dec 2005; Donnie Berkholz ; +metadata.xml, + +tinker-4.2.ebuild: + (#35945) New molecular mechanics package. Heavily modified ebuild based on + that of Jeremy Warren . diff --git a/sci-chemistry/tm-align/ChangeLog b/sci-chemistry/tm-align/ChangeLog deleted file mode 100644 index 6d4c009f..00000000 --- a/sci-chemistry/tm-align/ChangeLog +++ /dev/null @@ -1,71 +0,0 @@ -# ChangeLog for sci-chemistry/tm-align -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.18 2015/05/18 06:32:09 jlec Exp $ - - 18 May 2015; Justin Lecher -tm-align-20130511.ebuild: - Drop old - - 17 May 2015; Pacho Ramos tm-align-20140601.ebuild: - ppc64 stable wrt bug #549332 - - 15 May 2015; Pacho Ramos tm-align-20140601.ebuild: - ppc stable wrt bug #549332 - - 13 May 2015; Agostino Sarubbo tm-align-20140601.ebuild: - Stable for x86, wrt bug #549332 - - 13 May 2015; Agostino Sarubbo tm-align-20140601.ebuild: - Stable for amd64, wrt bug #549332 - - 13 May 2015; Jack Morgan tm-align-20130511.ebuild: - ppc64 stable wrt bug #544934 - - 21 Apr 2015; Pacho Ramos tm-align-20130511.ebuild: - ppc stable wrt bug #544934 - - 19 Apr 2015; Agostino Sarubbo tm-align-20130511.ebuild: - Stable for x86, wrt bug #544934 - - 08 Apr 2015; Agostino Sarubbo tm-align-20130511.ebuild: - Stable for amd64, wrt bug #544934 - -*tm-align-20140601 (29 Mar 2015) - - 29 Mar 2015; Justin Lecher +tm-align-20140601.ebuild, - -tm-align-20120124.ebuild, -tm-align-20120707.ebuild: - Version Bump; drop old - - 09 Feb 2015; Anthony G. Basile tm-align-20120707.ebuild, - tm-align-20130511.ebuild: - Keyword ~ppc64, bug #452010. - -*tm-align-20130511 (12 May 2013) - - 12 May 2013; Justin Lecher -tm-align-20130508.ebuild, - +tm-align-20130511.ebuild: - Version Bump, remove broken version - -*tm-align-20130508 (11 May 2013) - - 11 May 2013; Justin Lecher +tm-align-20130508.ebuild, - metadata.xml: - Version Bump - - 05 Feb 2013; Ulrich Müller tm-align-20120124.ebuild, - tm-align-20120707.ebuild: - Specify LICENSE more precisely, bug 455568. - - 03 Feb 2013; Agostino Sarubbo tm-align-20120707.ebuild: - Add ~ppc, wrt bug #452010 - -*tm-align-20120707 (13 Aug 2012) - - 13 Aug 2012; Justin Lecher tm-align-20120124.ebuild, - +tm-align-20120707.ebuild: - Version Bump - -*tm-align-20120124 (21 Mar 2012) - - 21 Mar 2012; Justin Lecher +tm-align-20120124.ebuild, - +files/CMakeLists.txt, +metadata.xml: - New addition, written by me diff --git a/sci-chemistry/tm-align/ChangeLog-2015 b/sci-chemistry/tm-align/ChangeLog-2015 new file mode 100644 index 00000000..6d4c009f --- /dev/null +++ b/sci-chemistry/tm-align/ChangeLog-2015 @@ -0,0 +1,71 @@ +# ChangeLog for sci-chemistry/tm-align +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tm-align/ChangeLog,v 1.18 2015/05/18 06:32:09 jlec Exp $ + + 18 May 2015; Justin Lecher -tm-align-20130511.ebuild: + Drop old + + 17 May 2015; Pacho Ramos tm-align-20140601.ebuild: + ppc64 stable wrt bug #549332 + + 15 May 2015; Pacho Ramos tm-align-20140601.ebuild: + ppc stable wrt bug #549332 + + 13 May 2015; Agostino Sarubbo tm-align-20140601.ebuild: + Stable for x86, wrt bug #549332 + + 13 May 2015; Agostino Sarubbo tm-align-20140601.ebuild: + Stable for amd64, wrt bug #549332 + + 13 May 2015; Jack Morgan tm-align-20130511.ebuild: + ppc64 stable wrt bug #544934 + + 21 Apr 2015; Pacho Ramos tm-align-20130511.ebuild: + ppc stable wrt bug #544934 + + 19 Apr 2015; Agostino Sarubbo tm-align-20130511.ebuild: + Stable for x86, wrt bug #544934 + + 08 Apr 2015; Agostino Sarubbo tm-align-20130511.ebuild: + Stable for amd64, wrt bug #544934 + +*tm-align-20140601 (29 Mar 2015) + + 29 Mar 2015; Justin Lecher +tm-align-20140601.ebuild, + -tm-align-20120124.ebuild, -tm-align-20120707.ebuild: + Version Bump; drop old + + 09 Feb 2015; Anthony G. Basile tm-align-20120707.ebuild, + tm-align-20130511.ebuild: + Keyword ~ppc64, bug #452010. + +*tm-align-20130511 (12 May 2013) + + 12 May 2013; Justin Lecher -tm-align-20130508.ebuild, + +tm-align-20130511.ebuild: + Version Bump, remove broken version + +*tm-align-20130508 (11 May 2013) + + 11 May 2013; Justin Lecher +tm-align-20130508.ebuild, + metadata.xml: + Version Bump + + 05 Feb 2013; Ulrich Müller tm-align-20120124.ebuild, + tm-align-20120707.ebuild: + Specify LICENSE more precisely, bug 455568. + + 03 Feb 2013; Agostino Sarubbo tm-align-20120707.ebuild: + Add ~ppc, wrt bug #452010 + +*tm-align-20120707 (13 Aug 2012) + + 13 Aug 2012; Justin Lecher tm-align-20120124.ebuild, + +tm-align-20120707.ebuild: + Version Bump + +*tm-align-20120124 (21 Mar 2012) + + 21 Mar 2012; Justin Lecher +tm-align-20120124.ebuild, + +files/CMakeLists.txt, +metadata.xml: + New addition, written by me diff --git a/sci-chemistry/viewmol/ChangeLog b/sci-chemistry/viewmol/ChangeLog deleted file mode 100644 index d3cd16ed..00000000 --- a/sci-chemistry/viewmol/ChangeLog +++ /dev/null @@ -1,71 +0,0 @@ -# ChangeLog for sci-chemistry/viewmol -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/viewmol/ChangeLog,v 1.17 2012/10/24 19:34:04 ulm Exp $ - - 24 Oct 2012; Ulrich Müller viewmol-2.4.1-r2.ebuild: - Update dependency after package move from x11-libs/openmotif to - x11-libs/motif. - - 06 Oct 2012; Justin Lecher viewmol-2.4.1-r2.ebuild: - Add missing DEP on virtual/glu, #437076 - - 25 Jun 2011; Justin Lecher viewmol-2.4.1-r2.ebuild, - metadata.xml: - Cleaned ebuild - -*viewmol-2.4.1-r2 (17 Apr 2011) - - 17 Apr 2011; Justin Lecher -viewmol-2.4.1-r1.ebuild, - +viewmol-2.4.1-r2.ebuild: - Fix installation into /usr/usr/share, #360271 - - 10 Oct 2010; Ulrich Mueller viewmol-2.4.1-r1.ebuild: - Fix openmotif dependency. - - 26 Apr 2010; Justin Lecher viewmol-2.4.1-r1.ebuild: - Using python_get_library -l - - 11 Mar 2010; Justin Lecher - -viewmol-2.4.1.ebuild: - broken version removed - -*viewmol-2.4.1-r1 (10 Mar 2010) - - 10 Mar 2010; Justin Lecher - +files/2.4.1-change-default-paths.patch, +viewmol-2.4.1-r1.ebuild: - Bumped to EAPI=3, princepily prefix ready, adopt to current python - situation, fix #308691 - - 27 Jun 2008; Ulrich Mueller viewmol-2.4.1.ebuild: - Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. - - 22 Jul 2007; Donnie Berkholz ; viewmol-2.4.1.ebuild: - Drop virtual/x11 references. - - 22 Feb 2007; Markus Ullmann ChangeLog: - Redigest for Manifest2 - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - - 05 Aug 2006; Donnie Berkholz ; metadata.xml: - Remove myself as maintainer, anyone feel free to work on this, although I'll - continue to do so as well. - - 07 Jul 2006; Donnie Berkholz ; metadata.xml: - Update to my new email address. - - 02 Dec 2005; Donnie Berkholz ; viewmol-2.4.1.ebuild: - Fix up modular X deps -- add libXp and libXi, remove libX11 and libXt as - redundant. - -*viewmol-2.4.1 (02 Dec 2005) - - 02 Dec 2005; Donnie Berkholz ; - +files/2.4.1-change-default-path-to-usr.patch, - +files/2.4.1-look-for-python-in-right-place.patch, - +files/2.4.1-remove-icc-check.patch, - +files/2.4.1-use-root-for-app-defaults.patch, +metadata.xml, - +viewmol-2.4.1.ebuild: - New GUI front-end for computational chemistry. - diff --git a/sci-chemistry/viewmol/ChangeLog-2015 b/sci-chemistry/viewmol/ChangeLog-2015 new file mode 100644 index 00000000..d3cd16ed --- /dev/null +++ b/sci-chemistry/viewmol/ChangeLog-2015 @@ -0,0 +1,71 @@ +# ChangeLog for sci-chemistry/viewmol +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/viewmol/ChangeLog,v 1.17 2012/10/24 19:34:04 ulm Exp $ + + 24 Oct 2012; Ulrich Müller viewmol-2.4.1-r2.ebuild: + Update dependency after package move from x11-libs/openmotif to + x11-libs/motif. + + 06 Oct 2012; Justin Lecher viewmol-2.4.1-r2.ebuild: + Add missing DEP on virtual/glu, #437076 + + 25 Jun 2011; Justin Lecher viewmol-2.4.1-r2.ebuild, + metadata.xml: + Cleaned ebuild + +*viewmol-2.4.1-r2 (17 Apr 2011) + + 17 Apr 2011; Justin Lecher -viewmol-2.4.1-r1.ebuild, + +viewmol-2.4.1-r2.ebuild: + Fix installation into /usr/usr/share, #360271 + + 10 Oct 2010; Ulrich Mueller viewmol-2.4.1-r1.ebuild: + Fix openmotif dependency. + + 26 Apr 2010; Justin Lecher viewmol-2.4.1-r1.ebuild: + Using python_get_library -l + + 11 Mar 2010; Justin Lecher + -viewmol-2.4.1.ebuild: + broken version removed + +*viewmol-2.4.1-r1 (10 Mar 2010) + + 10 Mar 2010; Justin Lecher + +files/2.4.1-change-default-paths.patch, +viewmol-2.4.1-r1.ebuild: + Bumped to EAPI=3, princepily prefix ready, adopt to current python + situation, fix #308691 + + 27 Jun 2008; Ulrich Mueller viewmol-2.4.1.ebuild: + Change dependency from virtual/motif to x11-libs/openmotif, bug 224749. + + 22 Jul 2007; Donnie Berkholz ; viewmol-2.4.1.ebuild: + Drop virtual/x11 references. + + 22 Feb 2007; Markus Ullmann ChangeLog: + Redigest for Manifest2 + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 05 Aug 2006; Donnie Berkholz ; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 07 Jul 2006; Donnie Berkholz ; metadata.xml: + Update to my new email address. + + 02 Dec 2005; Donnie Berkholz ; viewmol-2.4.1.ebuild: + Fix up modular X deps -- add libXp and libXi, remove libX11 and libXt as + redundant. + +*viewmol-2.4.1 (02 Dec 2005) + + 02 Dec 2005; Donnie Berkholz ; + +files/2.4.1-change-default-path-to-usr.patch, + +files/2.4.1-look-for-python-in-right-place.patch, + +files/2.4.1-remove-icc-check.patch, + +files/2.4.1-use-root-for-app-defaults.patch, +metadata.xml, + +viewmol-2.4.1.ebuild: + New GUI front-end for computational chemistry. + diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog deleted file mode 100644 index 79270673..00000000 --- a/sci-chemistry/vmd/ChangeLog +++ /dev/null @@ -1,292 +0,0 @@ -# ChangeLog for sci-chemistry/vmd -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.65 2015/07/31 10:30:15 jlec Exp $ - - 31 Jul 2015; Justin Lecher vmd-1.9.2.ebuild: - Depend on newer tk - - 30 Jul 2015; Justin Lecher vmd-1.9.2.ebuild: - Fix slot operators - - 08 Apr 2015; Justin Lecher -vmd-1.9.1-r3.ebuild: - Drop old - -*vmd-1.9.2 (06 Mar 2015) - - 06 Mar 2015; Justin Lecher - +files/vmd-1.9.2-format-security.patch, +vmd-1.9.2.ebuild, - -vmd-1.9.1-r2.ebuild, -vmd-1.9.1.ebuild, metadata.xml: - Version Bump; install optional plugins, #517886 - - 10 Feb 2015; Patrick Lauer -vmd-1.9.1-r1.ebuild: - Remove version with unsatisfiable dependencies - -*vmd-1.9.1-r3 (21 Aug 2014) - - 21 Aug 2014; Justin Lecher +vmd-1.9.1-r3.ebuild: - Drop arch specific NVCC flags - - 02 Oct 2013; Justin Lecher vmd-1.9.1-r2.ebuild, - +files/vmd-1.9.1-cuda-device_ptr.patch: - Add fix for cuda 5.5 - - 02 Oct 2013; Justin Lecher vmd-1.9.1-r2.ebuild: - Update dependency for tk - - 01 Mar 2013; Justin Lecher vmd-1.9.1.ebuild, - vmd-1.9.1-r1.ebuild, vmd-1.9.1-r2.ebuild: - Fix tcl/tk API to version 8.5, #451824; Upstream says it will be fixed in - version 1.9.2 - - 24 Jan 2013; Justin Lecher vmd-1.9.1.ebuild, - vmd-1.9.1-r1.ebuild: - Force py2, #450716 - - - 18 Jan 2013; Christoph Junghans vmd-1.9.1-r2.ebuild: - fix deps - -*vmd-1.9.1-r2 (11 Jan 2013) - - 11 Jan 2013; Justin Lecher +vmd-1.9.1-r2.ebuild, - +files/vmd-1.9.1-tcl8.6.patch, metadata.xml: - Use cuda.eclass and slo-operator for tcl - - 29 Nov 2012; Justin Lecher vmd-1.9.1.ebuild, - vmd-1.9.1-r1.ebuild: - Drop dep on old tk - - 15 Nov 2012; Christoph Junghans vmd-1.9.1-r1.ebuild: - fix build on x86 - -*vmd-1.9.1-r1 (14 Nov 2012) - - 14 Nov 2012; Justin Lecher +vmd-1.9.1-r1.ebuild: - Fix detection of netcdf; #406737, thanks Reinis Danne preparing the patch; - Loosen dep for cuda support, #406083 - - 24 Sep 2012; Mike Frysinger vmd-1.9.1.ebuild: - QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness). - - 05 Sep 2012; Justin Lecher -vmd-1.8.7-r2.ebuild, - -vmd-1.9.ebuild, vmd-1.9.1.ebuild: - Bumped to EAPI=4; use domenu; drop old - - 14 Feb 2012; Alexey Shvetsov vmd-1.9.1.ebuild: - Fix plugin install - -*vmd-1.9.1 (14 Feb 2012) - - 14 Feb 2012; Alexey Shvetsov +vmd-1.9.1.ebuild: - Version bump =D - - 10 Jan 2012; Justin Lecher vmd-1.9.ebuild: - Remove USE=static-libs because this breaks build, #365051 - - 10 Jan 2012; Justin Lecher vmd-1.9.ebuild, metadata.xml: - Enhance nofetch msg, fix compilation with USE=cuda and gcc != 4.4*, thanks - xarthisius for the help - - 20 Jul 2011; Pacho Ramos metadata.xml: - Drop maintainer due retirement, bug #105599 - - 15 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, - vmd-1.9.ebuild: - FILESDIR is gone, wverything is mirrored now. - - 13 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, - vmd-1.9.ebuild: - Mirrored files aren't fetchrestricted - - 13 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, - -files/vmd-1.8.7-gentoo.patch, -files/vmd-1.8.7-respect-flags.patch, - vmd-1.9.ebuild, -files/vmd-1.9-gentoo-base.patch, - -files/vmd-1.9-gentoo-plugins.patch, -files/vmd.desktop, -files/vmd.png: - No binaryfiles in VCS please, #370915 - - 27 Mar 2011; Justin Lecher vmd-1.9.ebuild: - Correct version of cuda dep, #360401 - -*vmd-1.9 (22 Mar 2011) - - 22 Mar 2011; Justin Lecher vmd-1.8.7-r2.ebuild, - +vmd-1.9.ebuild, +files/vmd-1.9-gentoo-base.patch, - +files/vmd-1.9-gentoo-plugins.patch, metadata.xml: - Version Bump, #358981; Dropped ppc due to missing KEYWORDS in DEPs - - 22 Mar 2011; Justin Lecher vmd-1.8.7-r2.ebuild: - Restrict fltk version being able to return includedir - - 20 Mar 2011; Justin Lecher -vmd-1.8.7-r1.ebuild, - vmd-1.8.7-r2.ebuild: - x11-libs/fltk SLOTMOVE 1.1 -> 1, corrected ebuild accordingly - - 11 Dec 2010; Justin Lecher vmd-1.8.7-r2.ebuild: - QA on quoting - - 30 Oct 2010; Justin Lecher vmd-1.8.7-r2.ebuild: - Corrected msms DEP to sci-chemistry/msms-bin - - 21 Aug 2010; Alexey Shvetsov vmd-1.8.7-r2.ebuild, - metadata.xml: - Add msms and povray to RDEPS as per bug #293504 - -*vmd-1.8.7-r2 (27 Jul 2010) - - 27 Jul 2010; Justin Lecher - -files/vmd-1.8.5-config-gentoo.patch, - -files/vmd-1.8.6-config-gentoo.patch, - -files/vmd-1.8.6-fix-crash-on-tcl8.5.patch, - -files/vmd-1.8.6-python-2.5.patch, -files/vmd-1.8.6-tcltk8.5.patch, - vmd-1.8.7-r1.ebuild, +vmd-1.8.7-r2.ebuild, -files/vmd-1.8.7-config.patch, - files/vmd-1.8.7-gentoo.patch, +files/vmd-1.8.7-respect-flags.patch, - -files/vmd-1.8.7-use-bash-startup.patch: - Make it really prefix ready, don't mix CFLAGS/CXXFLAGS,clean old patches - - 24 Jul 2010; Justin Lecher vmd-1.8.7-r1.ebuild: - Added prefix changes, thanks rei4dan #327517; keyworded for ~-linux prefix - - 28 May 2010; Justin Lecher -vmd-1.8.6.ebuild, - -vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild: - Removed all non PythonABI compatible ebuilds - -*vmd-1.8.7-r1 (18 May 2010) - - 18 May 2010; Justin Lecher +vmd-1.8.7-r1.ebuild, - files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-gentoo.patch: - Fix for new python ABIs, #316187; building netcdf plugin, #306893, thanks - Kamil Kisiel for the patch; LDFLAGS are respected now; EAPI=3 and basic - fixes for prefix, usability has to be tested - - 23 Feb 2010; Alexey Shvetsov vmd-1.8.6-r1.ebuild, - vmd-1.8.7.ebuild, metadata.xml: - add tachyon raytracer as rdep - - 18 Sep 2009; Petteri Räty vmd-1.8.7.ebuild: - Remove built_with_use and use proper DEPEND atoms that work properly for - both tk 8.4 and 8.5 users. - - 11 Aug 2009; Markus Dittrich vmd-1.8.7.ebuild, - +files/vmd.desktop, +files/vmd.png: - Added desktop entry and vmd icon (#262275). - Thanks much to Bjoern Olausson for creating them. - - 07 Aug 2009; Markus Dittrich vmd-1.8.7.ebuild, - files/vmd-1.8.7-config.patch: - Remove the EAPI2 check for -truetype and add explicit error logic - so tk-8.4 users can emerge vmd as well. Also updated the config - patch to handle tk8.4 better. - -*vmd-1.8.7 (05 Aug 2009) - - 05 Aug 2009; Markus Dittrich +vmd-1.8.7.ebuild, - +files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-use-bash-startup.patch: - Version bump (fixes bug #262275). - - 07 Jul 2009; Diego E. Pettenò vmd-1.8.6-r1.ebuild: - Use elog for fetch error. - - 18 May 2009; Jeff Gardner - +files/vmd-1.8.6-fix-crash-on-tcl8.5.patch: - adding alexxy's patch :) - - 17 May 2009; Jeff Gardner +vmd-1.8.6-r1.ebuild: - Fixed by alexxy to work with tcl8.5 - -*vmd-1.8.6-r1 (17 May 2009) - - 17 May 2009; Jeff Gardner +vmd-1.8.6-r1.ebuild: - Fixed by alexxy to work with tcl5.8 - - 12 Nov 2008; Markus Dittrich -vmd-1.8.5.ebuild, - vmd-1.8.6.ebuild: - Restrict fltk to 1.1 slot since vmd is not fltk-2 ready - (see bug #246445). Removed old ebuild. - - 13 Mar 2008; Markus Dittrich - +files/vmd-1.8.6-tcltk8.5.patch, vmd-1.8.6.ebuild: - Added tcltk-8.5 support (fixes bug #212936). - - 20 Sep 2007; Markus Dittrich - +files/vmd-1.8.6-python-2.5.patch, vmd-1.8.6.ebuild: - Added patch to fix python-2.5 compile issues on amd64 (fixes bug - #192902). Thanks much to milan hodoscek for his - patch. - - 22 Jul 2007; Donnie Berkholz ; vmd-1.8.5.ebuild, - vmd-1.8.6.ebuild: - Drop virtual/x11 references. - -*vmd-1.8.6 (15 Apr 2007) - - 15 Apr 2007; Markus Dittrich - -files/vmd-1.8.4-config-gentoo.patch, -files/vmd-1.8.4-paratool.patch, - -files/vmd-1.8.4-plugin-autopsf.patch, - +files/vmd-1.8.6-config-gentoo.patch, +vmd-1.8.6.ebuild: - Version bump (fixes bug #174595). Thanks much to Jeffrey Gardner - for his patch and ebuild. - - 08 Jan 2007; Danny van Dyk -vmd-1.8.4.ebuild, - -vmd-1.8.4-r1.ebuild: - QA: Removed unused versions. - - 07 Jan 2007; Markus Dittrich vmd-1.8.5.ebuild: - Replaced backslashes with colons in some sed statements - (see bug #145467). - - 03 Jan 2007; Jeff Gardner vmd-1.8.5.ebuild: - added ~amd64 - - 27 Dec 2006; Markus Dittrich vmd-1.8.5.ebuild: - Remove netcdf use flag and enable netcdf support by default - since it is needed by the catdcd plugin. This fixes bug #159081. - - 22 Dec 2006; Markus Dittrich - files/vmd-1.8.5-config-gentoo.patch, vmd-1.8.5.ebuild: - Added netcdf support. This fixes bug #158771. - - 09 Nov 2006; Markus Dittrich vmd-1.8.5.ebuild: - Enabled IMD functionality. Thanks to Stephane Gagne - for pointing this out (see bug #154429). - - 20 Sep 2006; Donnie Berkholz ; metadata.xml: - (#148281) Change herd to sci-chemistry from sci. - -*vmd-1.8.5 (26 Aug 2006) - - 26 Aug 2006; Markus Dittrich - -files/vmd-1.8.3-config-gentoo.patch, - +files/vmd-1.8.5-config-gentoo.patch, -vmd-1.8.3.ebuild, - +vmd-1.8.5.ebuild: - Version bump. Also removed some of the old ebuilds. - -*vmd-1.8.4-r1 (13 Aug 2006) - - 13 Aug 2006; Markus Dittrich - +files/vmd-1.8.4-paratool.patch, +vmd-1.8.4-r1.ebuild: - VMD now depends on stride in order to properly display secondary - structure information. Also patched a paratool plugin error under - tcl-8.4.13. - - 29 Apr 2006; Marien Zwart Manifest: - Fix SHA256 digests. - -*vmd-1.8.4 (18 Apr 2006) - - 18 Apr 2006; Markus Dittrich - +files/vmd-1.8.4-config-gentoo.patch, - +files/vmd-1.8.4-plugin-autopsf.patch, +vmd-1.8.4.ebuild: - Version bump. - - 21 Mar 2006; Donnie Berkholz ; vmd-1.8.3.ebuild: - Keyword ~ppc, and make changes to the wrapper script that may also fix amd64 - and alpha. - - 14 Feb 2006; Markus Dittrich Manifest: - Fixed bogus .Chanlog.swp file entry in Manifest. - -*vmd-1.8.3 (10 Feb 2006) - - 10 Feb 2006; Markus Dittrich - +files/vmd-1.8.3-config-gentoo.patch, +metadata.xml, +vmd-1.8.3.ebuild: - Initial import. diff --git a/sci-chemistry/vmd/ChangeLog-2015 b/sci-chemistry/vmd/ChangeLog-2015 new file mode 100644 index 00000000..79270673 --- /dev/null +++ b/sci-chemistry/vmd/ChangeLog-2015 @@ -0,0 +1,292 @@ +# ChangeLog for sci-chemistry/vmd +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.65 2015/07/31 10:30:15 jlec Exp $ + + 31 Jul 2015; Justin Lecher vmd-1.9.2.ebuild: + Depend on newer tk + + 30 Jul 2015; Justin Lecher vmd-1.9.2.ebuild: + Fix slot operators + + 08 Apr 2015; Justin Lecher -vmd-1.9.1-r3.ebuild: + Drop old + +*vmd-1.9.2 (06 Mar 2015) + + 06 Mar 2015; Justin Lecher + +files/vmd-1.9.2-format-security.patch, +vmd-1.9.2.ebuild, + -vmd-1.9.1-r2.ebuild, -vmd-1.9.1.ebuild, metadata.xml: + Version Bump; install optional plugins, #517886 + + 10 Feb 2015; Patrick Lauer -vmd-1.9.1-r1.ebuild: + Remove version with unsatisfiable dependencies + +*vmd-1.9.1-r3 (21 Aug 2014) + + 21 Aug 2014; Justin Lecher +vmd-1.9.1-r3.ebuild: + Drop arch specific NVCC flags + + 02 Oct 2013; Justin Lecher vmd-1.9.1-r2.ebuild, + +files/vmd-1.9.1-cuda-device_ptr.patch: + Add fix for cuda 5.5 + + 02 Oct 2013; Justin Lecher vmd-1.9.1-r2.ebuild: + Update dependency for tk + + 01 Mar 2013; Justin Lecher vmd-1.9.1.ebuild, + vmd-1.9.1-r1.ebuild, vmd-1.9.1-r2.ebuild: + Fix tcl/tk API to version 8.5, #451824; Upstream says it will be fixed in + version 1.9.2 + + 24 Jan 2013; Justin Lecher vmd-1.9.1.ebuild, + vmd-1.9.1-r1.ebuild: + Force py2, #450716 + + + 18 Jan 2013; Christoph Junghans vmd-1.9.1-r2.ebuild: + fix deps + +*vmd-1.9.1-r2 (11 Jan 2013) + + 11 Jan 2013; Justin Lecher +vmd-1.9.1-r2.ebuild, + +files/vmd-1.9.1-tcl8.6.patch, metadata.xml: + Use cuda.eclass and slo-operator for tcl + + 29 Nov 2012; Justin Lecher vmd-1.9.1.ebuild, + vmd-1.9.1-r1.ebuild: + Drop dep on old tk + + 15 Nov 2012; Christoph Junghans vmd-1.9.1-r1.ebuild: + fix build on x86 + +*vmd-1.9.1-r1 (14 Nov 2012) + + 14 Nov 2012; Justin Lecher +vmd-1.9.1-r1.ebuild: + Fix detection of netcdf; #406737, thanks Reinis Danne preparing the patch; + Loosen dep for cuda support, #406083 + + 24 Sep 2012; Mike Frysinger vmd-1.9.1.ebuild: + QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness). + + 05 Sep 2012; Justin Lecher -vmd-1.8.7-r2.ebuild, + -vmd-1.9.ebuild, vmd-1.9.1.ebuild: + Bumped to EAPI=4; use domenu; drop old + + 14 Feb 2012; Alexey Shvetsov vmd-1.9.1.ebuild: + Fix plugin install + +*vmd-1.9.1 (14 Feb 2012) + + 14 Feb 2012; Alexey Shvetsov +vmd-1.9.1.ebuild: + Version bump =D + + 10 Jan 2012; Justin Lecher vmd-1.9.ebuild: + Remove USE=static-libs because this breaks build, #365051 + + 10 Jan 2012; Justin Lecher vmd-1.9.ebuild, metadata.xml: + Enhance nofetch msg, fix compilation with USE=cuda and gcc != 4.4*, thanks + xarthisius for the help + + 20 Jul 2011; Pacho Ramos metadata.xml: + Drop maintainer due retirement, bug #105599 + + 15 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, + vmd-1.9.ebuild: + FILESDIR is gone, wverything is mirrored now. + + 13 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, + vmd-1.9.ebuild: + Mirrored files aren't fetchrestricted + + 13 Jun 2011; Justin Lecher vmd-1.8.7-r2.ebuild, + -files/vmd-1.8.7-gentoo.patch, -files/vmd-1.8.7-respect-flags.patch, + vmd-1.9.ebuild, -files/vmd-1.9-gentoo-base.patch, + -files/vmd-1.9-gentoo-plugins.patch, -files/vmd.desktop, -files/vmd.png: + No binaryfiles in VCS please, #370915 + + 27 Mar 2011; Justin Lecher vmd-1.9.ebuild: + Correct version of cuda dep, #360401 + +*vmd-1.9 (22 Mar 2011) + + 22 Mar 2011; Justin Lecher vmd-1.8.7-r2.ebuild, + +vmd-1.9.ebuild, +files/vmd-1.9-gentoo-base.patch, + +files/vmd-1.9-gentoo-plugins.patch, metadata.xml: + Version Bump, #358981; Dropped ppc due to missing KEYWORDS in DEPs + + 22 Mar 2011; Justin Lecher vmd-1.8.7-r2.ebuild: + Restrict fltk version being able to return includedir + + 20 Mar 2011; Justin Lecher -vmd-1.8.7-r1.ebuild, + vmd-1.8.7-r2.ebuild: + x11-libs/fltk SLOTMOVE 1.1 -> 1, corrected ebuild accordingly + + 11 Dec 2010; Justin Lecher vmd-1.8.7-r2.ebuild: + QA on quoting + + 30 Oct 2010; Justin Lecher vmd-1.8.7-r2.ebuild: + Corrected msms DEP to sci-chemistry/msms-bin + + 21 Aug 2010; Alexey Shvetsov vmd-1.8.7-r2.ebuild, + metadata.xml: + Add msms and povray to RDEPS as per bug #293504 + +*vmd-1.8.7-r2 (27 Jul 2010) + + 27 Jul 2010; Justin Lecher + -files/vmd-1.8.5-config-gentoo.patch, + -files/vmd-1.8.6-config-gentoo.patch, + -files/vmd-1.8.6-fix-crash-on-tcl8.5.patch, + -files/vmd-1.8.6-python-2.5.patch, -files/vmd-1.8.6-tcltk8.5.patch, + vmd-1.8.7-r1.ebuild, +vmd-1.8.7-r2.ebuild, -files/vmd-1.8.7-config.patch, + files/vmd-1.8.7-gentoo.patch, +files/vmd-1.8.7-respect-flags.patch, + -files/vmd-1.8.7-use-bash-startup.patch: + Make it really prefix ready, don't mix CFLAGS/CXXFLAGS,clean old patches + + 24 Jul 2010; Justin Lecher vmd-1.8.7-r1.ebuild: + Added prefix changes, thanks rei4dan #327517; keyworded for ~-linux prefix + + 28 May 2010; Justin Lecher -vmd-1.8.6.ebuild, + -vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild: + Removed all non PythonABI compatible ebuilds + +*vmd-1.8.7-r1 (18 May 2010) + + 18 May 2010; Justin Lecher +vmd-1.8.7-r1.ebuild, + files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-gentoo.patch: + Fix for new python ABIs, #316187; building netcdf plugin, #306893, thanks + Kamil Kisiel for the patch; LDFLAGS are respected now; EAPI=3 and basic + fixes for prefix, usability has to be tested + + 23 Feb 2010; Alexey Shvetsov vmd-1.8.6-r1.ebuild, + vmd-1.8.7.ebuild, metadata.xml: + add tachyon raytracer as rdep + + 18 Sep 2009; Petteri Räty vmd-1.8.7.ebuild: + Remove built_with_use and use proper DEPEND atoms that work properly for + both tk 8.4 and 8.5 users. + + 11 Aug 2009; Markus Dittrich vmd-1.8.7.ebuild, + +files/vmd.desktop, +files/vmd.png: + Added desktop entry and vmd icon (#262275). + Thanks much to Bjoern Olausson for creating them. + + 07 Aug 2009; Markus Dittrich vmd-1.8.7.ebuild, + files/vmd-1.8.7-config.patch: + Remove the EAPI2 check for -truetype and add explicit error logic + so tk-8.4 users can emerge vmd as well. Also updated the config + patch to handle tk8.4 better. + +*vmd-1.8.7 (05 Aug 2009) + + 05 Aug 2009; Markus Dittrich +vmd-1.8.7.ebuild, + +files/vmd-1.8.7-config.patch, +files/vmd-1.8.7-use-bash-startup.patch: + Version bump (fixes bug #262275). + + 07 Jul 2009; Diego E. Pettenò vmd-1.8.6-r1.ebuild: + Use elog for fetch error. + + 18 May 2009; Jeff Gardner + +files/vmd-1.8.6-fix-crash-on-tcl8.5.patch: + adding alexxy's patch :) + + 17 May 2009; Jeff Gardner +vmd-1.8.6-r1.ebuild: + Fixed by alexxy to work with tcl8.5 + +*vmd-1.8.6-r1 (17 May 2009) + + 17 May 2009; Jeff Gardner +vmd-1.8.6-r1.ebuild: + Fixed by alexxy to work with tcl5.8 + + 12 Nov 2008; Markus Dittrich -vmd-1.8.5.ebuild, + vmd-1.8.6.ebuild: + Restrict fltk to 1.1 slot since vmd is not fltk-2 ready + (see bug #246445). Removed old ebuild. + + 13 Mar 2008; Markus Dittrich + +files/vmd-1.8.6-tcltk8.5.patch, vmd-1.8.6.ebuild: + Added tcltk-8.5 support (fixes bug #212936). + + 20 Sep 2007; Markus Dittrich + +files/vmd-1.8.6-python-2.5.patch, vmd-1.8.6.ebuild: + Added patch to fix python-2.5 compile issues on amd64 (fixes bug + #192902). Thanks much to milan hodoscek for his + patch. + + 22 Jul 2007; Donnie Berkholz ; vmd-1.8.5.ebuild, + vmd-1.8.6.ebuild: + Drop virtual/x11 references. + +*vmd-1.8.6 (15 Apr 2007) + + 15 Apr 2007; Markus Dittrich + -files/vmd-1.8.4-config-gentoo.patch, -files/vmd-1.8.4-paratool.patch, + -files/vmd-1.8.4-plugin-autopsf.patch, + +files/vmd-1.8.6-config-gentoo.patch, +vmd-1.8.6.ebuild: + Version bump (fixes bug #174595). Thanks much to Jeffrey Gardner + for his patch and ebuild. + + 08 Jan 2007; Danny van Dyk -vmd-1.8.4.ebuild, + -vmd-1.8.4-r1.ebuild: + QA: Removed unused versions. + + 07 Jan 2007; Markus Dittrich vmd-1.8.5.ebuild: + Replaced backslashes with colons in some sed statements + (see bug #145467). + + 03 Jan 2007; Jeff Gardner vmd-1.8.5.ebuild: + added ~amd64 + + 27 Dec 2006; Markus Dittrich vmd-1.8.5.ebuild: + Remove netcdf use flag and enable netcdf support by default + since it is needed by the catdcd plugin. This fixes bug #159081. + + 22 Dec 2006; Markus Dittrich + files/vmd-1.8.5-config-gentoo.patch, vmd-1.8.5.ebuild: + Added netcdf support. This fixes bug #158771. + + 09 Nov 2006; Markus Dittrich vmd-1.8.5.ebuild: + Enabled IMD functionality. Thanks to Stephane Gagne + for pointing this out (see bug #154429). + + 20 Sep 2006; Donnie Berkholz ; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + +*vmd-1.8.5 (26 Aug 2006) + + 26 Aug 2006; Markus Dittrich + -files/vmd-1.8.3-config-gentoo.patch, + +files/vmd-1.8.5-config-gentoo.patch, -vmd-1.8.3.ebuild, + +vmd-1.8.5.ebuild: + Version bump. Also removed some of the old ebuilds. + +*vmd-1.8.4-r1 (13 Aug 2006) + + 13 Aug 2006; Markus Dittrich + +files/vmd-1.8.4-paratool.patch, +vmd-1.8.4-r1.ebuild: + VMD now depends on stride in order to properly display secondary + structure information. Also patched a paratool plugin error under + tcl-8.4.13. + + 29 Apr 2006; Marien Zwart Manifest: + Fix SHA256 digests. + +*vmd-1.8.4 (18 Apr 2006) + + 18 Apr 2006; Markus Dittrich + +files/vmd-1.8.4-config-gentoo.patch, + +files/vmd-1.8.4-plugin-autopsf.patch, +vmd-1.8.4.ebuild: + Version bump. + + 21 Mar 2006; Donnie Berkholz ; vmd-1.8.3.ebuild: + Keyword ~ppc, and make changes to the wrapper script that may also fix amd64 + and alpha. + + 14 Feb 2006; Markus Dittrich Manifest: + Fixed bogus .Chanlog.swp file entry in Manifest. + +*vmd-1.8.3 (10 Feb 2006) + + 10 Feb 2006; Markus Dittrich + +files/vmd-1.8.3-config-gentoo.patch, +metadata.xml, +vmd-1.8.3.ebuild: + Initial import. diff --git a/sci-chemistry/votca-csg/ChangeLog b/sci-chemistry/votca-csg/ChangeLog deleted file mode 100644 index bdea1a27..00000000 --- a/sci-chemistry/votca-csg/ChangeLog +++ /dev/null @@ -1,117 +0,0 @@ -# ChangeLog for sci-chemistry/votca-csg -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/votca-csg/ChangeLog,v 1.28 2015/03/16 08:23:47 ago Exp $ - - 16 Mar 2015; Agostino Sarubbo votca-csg-1.2.4-r1.ebuild: - Stable for x86, wrt bug #526968 - - 02 Jan 2015; Chema Alonso votca-csg-1.2.4-r1.ebuild: - Stable for amd64 wrt bug #526968 - -*votca-csg-1.2.4-r1 (24 Oct 2014) - - 24 Oct 2014; Christoph Junghans - +votca-csg-1.2.4-r1.ebuild, -votca-csg-1.2.4.ebuild: - fixed bash-comp (bug #526320) - -*votca-csg-1.2.4 (31 Aug 2014) - - 31 Aug 2014; Christoph Junghans +votca-csg-1.2.4.ebuild, - -votca-csg-1.2.3-r1.ebuild, -votca-csg-1.2.3.ebuild: - version bump - -*votca-csg-1.2.3-r1 (14 Apr 2013) - - 14 Apr 2013; Christoph Junghans - +votca-csg-1.2.3-r1.ebuild: - added subslot deps - - 27 Feb 2013; Michael Sterrett votca-csg-1.2.3.ebuild: - fix broken dep - - 26 Dec 2012; Christoph Junghans votca-csg-1.2.2.ebuild, - votca-csg-1.2.3.ebuild: - use new mercurial.eclass defaults - - 17 Nov 2012; Christoph Junghans metadata.xml: - updated metadata.xml - -*votca-csg-1.2.3 (17 Aug 2012) - - 17 Aug 2012; Christoph Junghans +votca-csg-1.2.3.ebuild: - version bump - - 04 May 2012; Jeff Horelick votca-csg-1.2.2.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - - 23 Feb 2012; Kacper Kowalik votca-csg-1.2.2.ebuild: - Fix dependency on app-doc/doxygen wrt converting useflags 'nodot' to 'dot'. - Fixes bug 405451 by Marien Zwart - - 05 Feb 2012; Christoph Junghans -votca-csg-1.2.1.ebuild: - remove old - - 25 Jan 2012; Thomas Kahle votca-csg-1.2.2.ebuild: - x86 stable per bug 389681 - - 25 Jan 2012; Christoph Junghans votca-csg-1.2.2.ebuild: - keyword ~x86-macos and fix bug #398437 - - 17 Jan 2012; Agostino Sarubbo votca-csg-1.2.2.ebuild: - Stable for amd64, wrt bug #389681 - - 13 Jan 2012; Christoph Junghans votca-csg-1.2.2.ebuild: - keyword ~amd64-linux - -*votca-csg-1.2.2 (11 Jan 2012) - - 11 Jan 2012; Christoph Junghans +votca-csg-1.2.2.ebuild: - version bump - - 14 Dec 2011; Agostino Sarubbo votca-csg-1.2.1.ebuild: - Stable for AMD64, wrt bug #389681 - - 05 Nov 2011; Christoph Junghans votca-csg-1.2.1.ebuild: - multilib support - - 10 Sep 2011; Christoph Junghans votca-csg-1.2.1.ebuild: - Migrate to the bash-completion-r1 eclass manifest - -*votca-csg-1.2.1 (25 Aug 2011) - - 25 Aug 2011; Christoph Junghans -votca-csg-1.2.ebuild, - +votca-csg-1.2.1.ebuild, metadata.xml: - version bump - - 14 Aug 2011; Christoph Junghans -votca-csg-1.1.1.ebuild, - -votca-csg-1.1.2.ebuild, votca-csg-1.2.ebuild, metadata.xml: - renamed boost useflag to system-boost and removed old - - 17 Jul 2011; Christoph Junghans votca-csg-1.2.ebuild: - Added IUSE=examples - -*votca-csg-1.2 (17 Jun 2011) - - 17 Jun 2011; Christoph Junghans +votca-csg-1.2.ebuild, - metadata.xml: - Version bump - -*votca-csg-1.1.2 (04 Apr 2011) - - 04 Apr 2011; Christoph Junghans +votca-csg-1.1.2.ebuild: - Version bump - - 09 Mar 2011; Christoph Junghans votca-csg-1.1.1.ebuild: - added ~amd64 (bug #357983) - -*votca-csg-1.1.1 (07 Mar 2011) - - 07 Mar 2011; Christoph Junghans -votca-csg-1.0.1.ebuild, - +votca-csg-1.1.1.ebuild: - version bump - -*votca-csg-1.0.1 (12 Feb 2011) - - 12 Feb 2011; Christoph Junghans +votca-csg-1.0.1.ebuild, - +metadata.xml: - Initial commit (bug #296707) diff --git a/sci-chemistry/votca-csg/ChangeLog-2015 b/sci-chemistry/votca-csg/ChangeLog-2015 new file mode 100644 index 00000000..bdea1a27 --- /dev/null +++ b/sci-chemistry/votca-csg/ChangeLog-2015 @@ -0,0 +1,117 @@ +# ChangeLog for sci-chemistry/votca-csg +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/votca-csg/ChangeLog,v 1.28 2015/03/16 08:23:47 ago Exp $ + + 16 Mar 2015; Agostino Sarubbo votca-csg-1.2.4-r1.ebuild: + Stable for x86, wrt bug #526968 + + 02 Jan 2015; Chema Alonso votca-csg-1.2.4-r1.ebuild: + Stable for amd64 wrt bug #526968 + +*votca-csg-1.2.4-r1 (24 Oct 2014) + + 24 Oct 2014; Christoph Junghans + +votca-csg-1.2.4-r1.ebuild, -votca-csg-1.2.4.ebuild: + fixed bash-comp (bug #526320) + +*votca-csg-1.2.4 (31 Aug 2014) + + 31 Aug 2014; Christoph Junghans +votca-csg-1.2.4.ebuild, + -votca-csg-1.2.3-r1.ebuild, -votca-csg-1.2.3.ebuild: + version bump + +*votca-csg-1.2.3-r1 (14 Apr 2013) + + 14 Apr 2013; Christoph Junghans + +votca-csg-1.2.3-r1.ebuild: + added subslot deps + + 27 Feb 2013; Michael Sterrett votca-csg-1.2.3.ebuild: + fix broken dep + + 26 Dec 2012; Christoph Junghans votca-csg-1.2.2.ebuild, + votca-csg-1.2.3.ebuild: + use new mercurial.eclass defaults + + 17 Nov 2012; Christoph Junghans metadata.xml: + updated metadata.xml + +*votca-csg-1.2.3 (17 Aug 2012) + + 17 Aug 2012; Christoph Junghans +votca-csg-1.2.3.ebuild: + version bump + + 04 May 2012; Jeff Horelick votca-csg-1.2.2.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + + 23 Feb 2012; Kacper Kowalik votca-csg-1.2.2.ebuild: + Fix dependency on app-doc/doxygen wrt converting useflags 'nodot' to 'dot'. + Fixes bug 405451 by Marien Zwart + + 05 Feb 2012; Christoph Junghans -votca-csg-1.2.1.ebuild: + remove old + + 25 Jan 2012; Thomas Kahle votca-csg-1.2.2.ebuild: + x86 stable per bug 389681 + + 25 Jan 2012; Christoph Junghans votca-csg-1.2.2.ebuild: + keyword ~x86-macos and fix bug #398437 + + 17 Jan 2012; Agostino Sarubbo votca-csg-1.2.2.ebuild: + Stable for amd64, wrt bug #389681 + + 13 Jan 2012; Christoph Junghans votca-csg-1.2.2.ebuild: + keyword ~amd64-linux + +*votca-csg-1.2.2 (11 Jan 2012) + + 11 Jan 2012; Christoph Junghans +votca-csg-1.2.2.ebuild: + version bump + + 14 Dec 2011; Agostino Sarubbo votca-csg-1.2.1.ebuild: + Stable for AMD64, wrt bug #389681 + + 05 Nov 2011; Christoph Junghans votca-csg-1.2.1.ebuild: + multilib support + + 10 Sep 2011; Christoph Junghans votca-csg-1.2.1.ebuild: + Migrate to the bash-completion-r1 eclass manifest + +*votca-csg-1.2.1 (25 Aug 2011) + + 25 Aug 2011; Christoph Junghans -votca-csg-1.2.ebuild, + +votca-csg-1.2.1.ebuild, metadata.xml: + version bump + + 14 Aug 2011; Christoph Junghans -votca-csg-1.1.1.ebuild, + -votca-csg-1.1.2.ebuild, votca-csg-1.2.ebuild, metadata.xml: + renamed boost useflag to system-boost and removed old + + 17 Jul 2011; Christoph Junghans votca-csg-1.2.ebuild: + Added IUSE=examples + +*votca-csg-1.2 (17 Jun 2011) + + 17 Jun 2011; Christoph Junghans +votca-csg-1.2.ebuild, + metadata.xml: + Version bump + +*votca-csg-1.1.2 (04 Apr 2011) + + 04 Apr 2011; Christoph Junghans +votca-csg-1.1.2.ebuild: + Version bump + + 09 Mar 2011; Christoph Junghans votca-csg-1.1.1.ebuild: + added ~amd64 (bug #357983) + +*votca-csg-1.1.1 (07 Mar 2011) + + 07 Mar 2011; Christoph Junghans -votca-csg-1.0.1.ebuild, + +votca-csg-1.1.1.ebuild: + version bump + +*votca-csg-1.0.1 (12 Feb 2011) + + 12 Feb 2011; Christoph Junghans +votca-csg-1.0.1.ebuild, + +metadata.xml: + Initial commit (bug #296707) diff --git a/sci-chemistry/votca-csgapps/ChangeLog b/sci-chemistry/votca-csgapps/ChangeLog deleted file mode 100644 index ed61fadf..00000000 --- a/sci-chemistry/votca-csgapps/ChangeLog +++ /dev/null @@ -1,66 +0,0 @@ -# ChangeLog for sci-chemistry/votca-csgapps -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/votca-csgapps/ChangeLog,v 1.16 2015/03/16 08:23:53 ago Exp $ - - 16 Mar 2015; Agostino Sarubbo votca-csgapps-1.2.4.ebuild: - Stable for x86, wrt bug #526968 - - 02 Jan 2015; Chema Alonso votca-csgapps-1.2.4.ebuild: - Stable for amd64 wrt bug #526968 - - 25 Oct 2014; Patrick Lauer votca-csgapps-1.2.4.ebuild: - Adjust dependencies to be a bit more tolerant since votca-csg now only has a - -r1 ebuild - -*votca-csgapps-1.2.4 (31 Aug 2014) - - 31 Aug 2014; Christoph Junghans - +votca-csgapps-1.2.4.ebuild, -votca-csgapps-1.2.3.ebuild: - version bump - - 26 Dec 2012; Christoph Junghans - votca-csgapps-1.2.2.ebuild, votca-csgapps-1.2.3.ebuild: - use new mercurial.eclass defaults - -*votca-csgapps-1.2.3 (17 Aug 2012) - - 17 Aug 2012; Christoph Junghans - +votca-csgapps-1.2.3.ebuild: - version bump - - 05 Feb 2012; Christoph Junghans - -votca-csgapps-1.2.1.ebuild: - remove old - - 25 Jan 2012; Thomas Kahle Manifest: - fix manifest - - 25 Jan 2012; Thomas Kahle votca-csgapps-1.2.2.ebuild: - x86 stable per bug 389681 - - 25 Jan 2012; Christoph Junghans - votca-csgapps-1.2.2.ebuild: - keyword ~x86-macos - - 17 Jan 2012; Agostino Sarubbo votca-csgapps-1.2.2.ebuild: - Stable for amd64, wrt bug #389681 - - 14 Jan 2012; Christoph Junghans - votca-csgapps-1.2.2.ebuild: - keyword ~amd64-linux - - 13 Jan 2012; Christoph Junghans - votca-csgapps-1.2.2.ebuild, +files/votca-csgapps-1.2.2-dso.patch: - fixes for amd64-linux - -*votca-csgapps-1.2.2 (11 Jan 2012) - - 11 Jan 2012; Christoph Junghans - +votca-csgapps-1.2.2.ebuild: - version bump - - 14 Dec 2011; Agostino Sarubbo votca-csgapps-1.2.1.ebuild: - Stable for AMD64, wrt bug #389681 - - 25 Aug 2011; Christoph Junghans +metadata.xml: - initial commit diff --git a/sci-chemistry/votca-csgapps/ChangeLog-2015 b/sci-chemistry/votca-csgapps/ChangeLog-2015 new file mode 100644 index 00000000..ed61fadf --- /dev/null +++ b/sci-chemistry/votca-csgapps/ChangeLog-2015 @@ -0,0 +1,66 @@ +# ChangeLog for sci-chemistry/votca-csgapps +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/votca-csgapps/ChangeLog,v 1.16 2015/03/16 08:23:53 ago Exp $ + + 16 Mar 2015; Agostino Sarubbo votca-csgapps-1.2.4.ebuild: + Stable for x86, wrt bug #526968 + + 02 Jan 2015; Chema Alonso votca-csgapps-1.2.4.ebuild: + Stable for amd64 wrt bug #526968 + + 25 Oct 2014; Patrick Lauer votca-csgapps-1.2.4.ebuild: + Adjust dependencies to be a bit more tolerant since votca-csg now only has a + -r1 ebuild + +*votca-csgapps-1.2.4 (31 Aug 2014) + + 31 Aug 2014; Christoph Junghans + +votca-csgapps-1.2.4.ebuild, -votca-csgapps-1.2.3.ebuild: + version bump + + 26 Dec 2012; Christoph Junghans + votca-csgapps-1.2.2.ebuild, votca-csgapps-1.2.3.ebuild: + use new mercurial.eclass defaults + +*votca-csgapps-1.2.3 (17 Aug 2012) + + 17 Aug 2012; Christoph Junghans + +votca-csgapps-1.2.3.ebuild: + version bump + + 05 Feb 2012; Christoph Junghans + -votca-csgapps-1.2.1.ebuild: + remove old + + 25 Jan 2012; Thomas Kahle Manifest: + fix manifest + + 25 Jan 2012; Thomas Kahle votca-csgapps-1.2.2.ebuild: + x86 stable per bug 389681 + + 25 Jan 2012; Christoph Junghans + votca-csgapps-1.2.2.ebuild: + keyword ~x86-macos + + 17 Jan 2012; Agostino Sarubbo votca-csgapps-1.2.2.ebuild: + Stable for amd64, wrt bug #389681 + + 14 Jan 2012; Christoph Junghans + votca-csgapps-1.2.2.ebuild: + keyword ~amd64-linux + + 13 Jan 2012; Christoph Junghans + votca-csgapps-1.2.2.ebuild, +files/votca-csgapps-1.2.2-dso.patch: + fixes for amd64-linux + +*votca-csgapps-1.2.2 (11 Jan 2012) + + 11 Jan 2012; Christoph Junghans + +votca-csgapps-1.2.2.ebuild: + version bump + + 14 Dec 2011; Agostino Sarubbo votca-csgapps-1.2.1.ebuild: + Stable for AMD64, wrt bug #389681 + + 25 Aug 2011; Christoph Junghans +metadata.xml: + initial commit diff --git a/sci-chemistry/wxmacmolplt/ChangeLog b/sci-chemistry/wxmacmolplt/ChangeLog deleted file mode 100644 index adc14201..00000000 --- a/sci-chemistry/wxmacmolplt/ChangeLog +++ /dev/null @@ -1,66 +0,0 @@ -# ChangeLog for sci-chemistry/wxmacmolplt -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/wxmacmolplt/ChangeLog,v 1.13 2015/04/07 14:39:56 jlec Exp $ - -*wxmacmolplt-7.5 (06 Jan 2014) - - 06 Jan 2014; Justin Lecher +wxmacmolplt-7.5.ebuild, - +files/wxmacmolplt-7.5-glew.patch: - Version Bump, #439438; thanks Reinis Danne for the ebuild - - 06 Jan 2014; Justin Lecher wxmacmolplt-7.4.2.ebuild, - metadata.xml: - Bump to EAPI=5; punt base.eclass - - 04 May 2012; Jeff Horelick wxmacmolplt-7.4.2.ebuild: - dev-util/pkgconfig -> virtual/pkgconfig - -*wxmacmolplt-7.4.2 (06 Dec 2010) - - 06 Dec 2010; Alexey Shvetsov -wxmacmolplt-7.4-r1.ebuild, - +wxmacmolplt-7.4.2.ebuild, +files/wxmacmolplt-7.4.2-glew.patch, - -files/wxmacmolplt-7.4-flash.patch, -files/wxmacmolplt-7.4-glew.patch: - Version bump - - 25 Jun 2010; Kacper Kowalik - wxmacmolplt-7.4-r1.ebuild: - Correct dependency on media-libs/ming - -*wxmacmolplt-7.4-r1 (25 Jun 2010) - - 25 Jun 2010; Justin Lecher -wxmacmolplt-7.3.ebuild, - -wxmacmolplt-7.3-r1.ebuild, -wxmacmolplt-7.4.ebuild, - +wxmacmolplt-7.4-r1.ebuild, +files/wxmacmolplt-7.4-flash.patch, - +files/wxmacmolplt-7.4-glew.patch: - Removed old, fixes for gl handling and flash support - - 25 Jun 2010; Justin Lecher wxmacmolplt-7.4.ebuild: - Restrict ming to <0.4 - - 09 Mar 2010; Jonathan Callen wxmacmolplt-7.3.ebuild, - wxmacmolplt-7.3-r1.ebuild, wxmacmolplt-7.4.ebuild: - QA: When not using an absolute path, you MUST NOT use a file extension - (.png, .svg, or .xpm) on the icon name for make_desktop_entry - - 18 Feb 2010; Ryan Hill wxmacmolplt-7.3.ebuild, - wxmacmolplt-7.3-r1.ebuild, wxmacmolplt-7.4.ebuild: - Use wxwidgets.eclass - -*wxmacmolplt-7.4 (24 Jan 2010) - - 24 Jan 2010; Alexey Shvetsov +wxmacmolplt-7.4.ebuild: - Version bump per bug #292977 - -*wxmacmolplt-7.3-r1 (22 Jan 2010) - - 22 Jan 2010; Markus Dittrich - +wxmacmolplt-7.3-r1.ebuild: - New revision does not install docs any more since they only consisted - of the license file. This fixes also bug #300977. - -*wxmacmolplt-7.3 (01 Nov 2009) - - 01 Nov 2009; Alexey Shvetsov +wxmacmolplt-7.3.ebuild, - +metadata.xml: - Initial import. Thanks to Reinis Danne - diff --git a/sci-chemistry/wxmacmolplt/ChangeLog-2015 b/sci-chemistry/wxmacmolplt/ChangeLog-2015 new file mode 100644 index 00000000..adc14201 --- /dev/null +++ b/sci-chemistry/wxmacmolplt/ChangeLog-2015 @@ -0,0 +1,66 @@ +# ChangeLog for sci-chemistry/wxmacmolplt +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/wxmacmolplt/ChangeLog,v 1.13 2015/04/07 14:39:56 jlec Exp $ + +*wxmacmolplt-7.5 (06 Jan 2014) + + 06 Jan 2014; Justin Lecher +wxmacmolplt-7.5.ebuild, + +files/wxmacmolplt-7.5-glew.patch: + Version Bump, #439438; thanks Reinis Danne for the ebuild + + 06 Jan 2014; Justin Lecher wxmacmolplt-7.4.2.ebuild, + metadata.xml: + Bump to EAPI=5; punt base.eclass + + 04 May 2012; Jeff Horelick wxmacmolplt-7.4.2.ebuild: + dev-util/pkgconfig -> virtual/pkgconfig + +*wxmacmolplt-7.4.2 (06 Dec 2010) + + 06 Dec 2010; Alexey Shvetsov -wxmacmolplt-7.4-r1.ebuild, + +wxmacmolplt-7.4.2.ebuild, +files/wxmacmolplt-7.4.2-glew.patch, + -files/wxmacmolplt-7.4-flash.patch, -files/wxmacmolplt-7.4-glew.patch: + Version bump + + 25 Jun 2010; Kacper Kowalik + wxmacmolplt-7.4-r1.ebuild: + Correct dependency on media-libs/ming + +*wxmacmolplt-7.4-r1 (25 Jun 2010) + + 25 Jun 2010; Justin Lecher -wxmacmolplt-7.3.ebuild, + -wxmacmolplt-7.3-r1.ebuild, -wxmacmolplt-7.4.ebuild, + +wxmacmolplt-7.4-r1.ebuild, +files/wxmacmolplt-7.4-flash.patch, + +files/wxmacmolplt-7.4-glew.patch: + Removed old, fixes for gl handling and flash support + + 25 Jun 2010; Justin Lecher wxmacmolplt-7.4.ebuild: + Restrict ming to <0.4 + + 09 Mar 2010; Jonathan Callen wxmacmolplt-7.3.ebuild, + wxmacmolplt-7.3-r1.ebuild, wxmacmolplt-7.4.ebuild: + QA: When not using an absolute path, you MUST NOT use a file extension + (.png, .svg, or .xpm) on the icon name for make_desktop_entry + + 18 Feb 2010; Ryan Hill wxmacmolplt-7.3.ebuild, + wxmacmolplt-7.3-r1.ebuild, wxmacmolplt-7.4.ebuild: + Use wxwidgets.eclass + +*wxmacmolplt-7.4 (24 Jan 2010) + + 24 Jan 2010; Alexey Shvetsov +wxmacmolplt-7.4.ebuild: + Version bump per bug #292977 + +*wxmacmolplt-7.3-r1 (22 Jan 2010) + + 22 Jan 2010; Markus Dittrich + +wxmacmolplt-7.3-r1.ebuild: + New revision does not install docs any more since they only consisted + of the license file. This fixes also bug #300977. + +*wxmacmolplt-7.3 (01 Nov 2009) + + 01 Nov 2009; Alexey Shvetsov +wxmacmolplt-7.3.ebuild, + +metadata.xml: + Initial import. Thanks to Reinis Danne + diff --git a/sci-chemistry/xds-bin/ChangeLog b/sci-chemistry/xds-bin/ChangeLog deleted file mode 100644 index 4dc633cb..00000000 --- a/sci-chemistry/xds-bin/ChangeLog +++ /dev/null @@ -1,99 +0,0 @@ -# ChangeLog for sci-chemistry/xds-bin -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xds-bin/ChangeLog,v 1.18 2015/04/07 14:40:02 jlec Exp $ - -*xds-bin-20150301 (03 Mar 2015) - - 03 Mar 2015; Justin Lecher +xds-bin-20150301.ebuild, - -xds-bin-20141119.ebuild: - Version Bump - -*xds-bin-20141119 (02 Mar 2015) - - 02 Mar 2015; Justin Lecher +xds-bin-20141119.ebuild, - -xds-bin-20141018.ebuild: - Version Bump, #516390 - -*xds-bin-20141018 (14 Jan 2015) - - 14 Jan 2015; Justin Lecher -xds-bin-20140110.ebuild, - +xds-bin-20141018.ebuild: - Version Bump - -*xds-bin-20140110 (06 Jul 2014) - - 06 Jul 2014; Justin Lecher -xds-bin-20131111.ebuild, - +xds-bin-20140110.ebuild: - Version Bump, #516390 - -*xds-bin-20131111 (28 Nov 2013) - - 28 Nov 2013; Justin Lecher -xds-bin-20130530.ebuild, - +xds-bin-20131111.ebuild: - Version Bump - -*xds-bin-20130530 (30 May 2013) - - 30 May 2013; Justin Lecher -xds-bin-20120926.ebuild, - +xds-bin-20130530.ebuild: - Version Bump - -*xds-bin-20120926 (24 Mar 2013) - - 24 Mar 2013; Justin Lecher -xds-bin-20111230.ebuild, - +xds-bin-20120926.ebuild, metadata.xml: - Version Bump, #462730 - - 25 Jul 2012; Justin Lecher xds-bin-20111230.ebuild, - metadata.xml: - Use QA_PREBUILT for binary packages - -*xds-bin-20111230 (31 Dec 2011) - - 31 Dec 2011; Justin Lecher -xds-bin-20111220.ebuild, - +xds-bin-20111230.ebuild: - Version Bump - -*xds-bin-20111220 (20 Dec 2011) - - 20 Dec 2011; Justin Lecher -xds-bin-20110610.ebuild, - +xds-bin-20111220.ebuild: - Version Bump - -*xds-bin-20110610 (10 Jun 2011) - - 10 Jun 2011; Justin Lecher -xds-bin-20110111.ebuild, - +xds-bin-20110610.ebuild: - Version Bump - - 11 Jan 2011; Justin Lecher xds-bin-20110111.ebuild: - Included docs again - -*xds-bin-20110111 (11 Jan 2011) - - 11 Jan 2011; Justin Lecher -xds-bin-20100510.ebuild, - +xds-bin-20110111.ebuild: - Version Bump - -*xds-bin-20100510 (21 May 2010) - - 21 May 2010; Justin Lecher -xds-bin-20091228.ebuild, - +xds-bin-20100510.ebuild: - Version Bump, no docs this time, QA_EXECSTACK set - -*xds-bin-20091228 (31 Jan 2010) - - 31 Jan 2010; Justin Lecher (jlec) - -xds-bin-20080602.ebuild, +xds-bin-20091228.ebuild: - Version bump, fixing bug 247788 - Adding new Viewer as RDEPEND - - 17 Oct 2008; Markus Meier metadata.xml: - smp USE-flag is global now - -*xds-bin-20080602 (03 Aug 2008) - - 03 Aug 2008; Donnie Berkholz ; +metadata.xml, - +xds-bin-20080602.ebuild: - (#209120) New package: X-ray Detector Software for processing - single-crystal monochromatic diffraction data. diff --git a/sci-chemistry/xds-bin/ChangeLog-2015 b/sci-chemistry/xds-bin/ChangeLog-2015 new file mode 100644 index 00000000..4dc633cb --- /dev/null +++ b/sci-chemistry/xds-bin/ChangeLog-2015 @@ -0,0 +1,99 @@ +# ChangeLog for sci-chemistry/xds-bin +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xds-bin/ChangeLog,v 1.18 2015/04/07 14:40:02 jlec Exp $ + +*xds-bin-20150301 (03 Mar 2015) + + 03 Mar 2015; Justin Lecher +xds-bin-20150301.ebuild, + -xds-bin-20141119.ebuild: + Version Bump + +*xds-bin-20141119 (02 Mar 2015) + + 02 Mar 2015; Justin Lecher +xds-bin-20141119.ebuild, + -xds-bin-20141018.ebuild: + Version Bump, #516390 + +*xds-bin-20141018 (14 Jan 2015) + + 14 Jan 2015; Justin Lecher -xds-bin-20140110.ebuild, + +xds-bin-20141018.ebuild: + Version Bump + +*xds-bin-20140110 (06 Jul 2014) + + 06 Jul 2014; Justin Lecher -xds-bin-20131111.ebuild, + +xds-bin-20140110.ebuild: + Version Bump, #516390 + +*xds-bin-20131111 (28 Nov 2013) + + 28 Nov 2013; Justin Lecher -xds-bin-20130530.ebuild, + +xds-bin-20131111.ebuild: + Version Bump + +*xds-bin-20130530 (30 May 2013) + + 30 May 2013; Justin Lecher -xds-bin-20120926.ebuild, + +xds-bin-20130530.ebuild: + Version Bump + +*xds-bin-20120926 (24 Mar 2013) + + 24 Mar 2013; Justin Lecher -xds-bin-20111230.ebuild, + +xds-bin-20120926.ebuild, metadata.xml: + Version Bump, #462730 + + 25 Jul 2012; Justin Lecher xds-bin-20111230.ebuild, + metadata.xml: + Use QA_PREBUILT for binary packages + +*xds-bin-20111230 (31 Dec 2011) + + 31 Dec 2011; Justin Lecher -xds-bin-20111220.ebuild, + +xds-bin-20111230.ebuild: + Version Bump + +*xds-bin-20111220 (20 Dec 2011) + + 20 Dec 2011; Justin Lecher -xds-bin-20110610.ebuild, + +xds-bin-20111220.ebuild: + Version Bump + +*xds-bin-20110610 (10 Jun 2011) + + 10 Jun 2011; Justin Lecher -xds-bin-20110111.ebuild, + +xds-bin-20110610.ebuild: + Version Bump + + 11 Jan 2011; Justin Lecher xds-bin-20110111.ebuild: + Included docs again + +*xds-bin-20110111 (11 Jan 2011) + + 11 Jan 2011; Justin Lecher -xds-bin-20100510.ebuild, + +xds-bin-20110111.ebuild: + Version Bump + +*xds-bin-20100510 (21 May 2010) + + 21 May 2010; Justin Lecher -xds-bin-20091228.ebuild, + +xds-bin-20100510.ebuild: + Version Bump, no docs this time, QA_EXECSTACK set + +*xds-bin-20091228 (31 Jan 2010) + + 31 Jan 2010; Justin Lecher (jlec) + -xds-bin-20080602.ebuild, +xds-bin-20091228.ebuild: + Version bump, fixing bug 247788 + Adding new Viewer as RDEPEND + + 17 Oct 2008; Markus Meier metadata.xml: + smp USE-flag is global now + +*xds-bin-20080602 (03 Aug 2008) + + 03 Aug 2008; Donnie Berkholz ; +metadata.xml, + +xds-bin-20080602.ebuild: + (#209120) New package: X-ray Detector Software for processing + single-crystal monochromatic diffraction data. diff --git a/sci-chemistry/xdsgui/ChangeLog b/sci-chemistry/xdsgui/ChangeLog deleted file mode 100644 index 437d0072..00000000 --- a/sci-chemistry/xdsgui/ChangeLog +++ /dev/null @@ -1,16 +0,0 @@ -# ChangeLog for sci-chemistry/xdsgui -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsgui/ChangeLog,v 1.2 2013/05/30 09:46:27 jlec Exp $ - - 30 May 2013; Justin Lecher xdsgui-0_p130530.ebuild: - Block QA Warning as package is prebuilt, add missing deo - - 30 May 2013; Justin Lecher xdsgui-0_p130530.ebuild: - Block QA Warning as package is prebuilt, add missing deo - -*xdsgui-0_p130530 (30 May 2013) - - 30 May 2013; Justin Lecher +xdsgui-0_p130530.ebuild, - +metadata.xml: - New addition - diff --git a/sci-chemistry/xdsgui/ChangeLog-2015 b/sci-chemistry/xdsgui/ChangeLog-2015 new file mode 100644 index 00000000..437d0072 --- /dev/null +++ b/sci-chemistry/xdsgui/ChangeLog-2015 @@ -0,0 +1,16 @@ +# ChangeLog for sci-chemistry/xdsgui +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsgui/ChangeLog,v 1.2 2013/05/30 09:46:27 jlec Exp $ + + 30 May 2013; Justin Lecher xdsgui-0_p130530.ebuild: + Block QA Warning as package is prebuilt, add missing deo + + 30 May 2013; Justin Lecher xdsgui-0_p130530.ebuild: + Block QA Warning as package is prebuilt, add missing deo + +*xdsgui-0_p130530 (30 May 2013) + + 30 May 2013; Justin Lecher +xdsgui-0_p130530.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/xdsi/ChangeLog b/sci-chemistry/xdsi/ChangeLog deleted file mode 100644 index 99b30290..00000000 --- a/sci-chemistry/xdsi/ChangeLog +++ /dev/null @@ -1,36 +0,0 @@ -# ChangeLog for sci-chemistry/xdsi -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/ChangeLog,v 1.8 2015/02/11 15:56:56 jlec Exp $ - - 11 Feb 2015; Justin Lecher xdsi-0.92-r1.ebuild: - Add RESTRICT="mirror bindist", #470790 - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 20 May 2013; Justin Lecher xdsi-0.92-r1.ebuild: - Change license to a-r-r and RESTRICT=mirror, #470790 - - 20 May 2013; Justin Lecher xdsi-0.92-r1.ebuild, - metadata.xml: - Fix HOMEPAGE - -*xdsi-0.92-r1 (31 Jan 2012) - - 31 Jan 2012; Justin Lecher -files/0.91-gentoo.patch, - +xdsi-0.92-r1.ebuild, files/0.92-gentoo.patch, -xdsi-0.91.ebuild, - -xdsi-0.92.ebuild, metadata.xml: - Optionally depend on media-gfx/graphicsmagick[image], #314369; exchange RDEP - xpdf -> mupdf, #401289; drop old - -*xdsi-0.92 (17 May 2010) - - 17 May 2010; Justin Lecher +files/0.92-gentoo.patch, - +xdsi-0.92.ebuild: - Version Bump - -*xdsi-0.91 (17 Feb 2010) - - 17 Feb 2010; Justin Lecher - +files/0.91-gentoo.patch, +xdsi-0.91.ebuild, +metadata.xml: - Initial addition diff --git a/sci-chemistry/xdsi/ChangeLog-2015 b/sci-chemistry/xdsi/ChangeLog-2015 new file mode 100644 index 00000000..99b30290 --- /dev/null +++ b/sci-chemistry/xdsi/ChangeLog-2015 @@ -0,0 +1,36 @@ +# ChangeLog for sci-chemistry/xdsi +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/ChangeLog,v 1.8 2015/02/11 15:56:56 jlec Exp $ + + 11 Feb 2015; Justin Lecher xdsi-0.92-r1.ebuild: + Add RESTRICT="mirror bindist", #470790 + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 20 May 2013; Justin Lecher xdsi-0.92-r1.ebuild: + Change license to a-r-r and RESTRICT=mirror, #470790 + + 20 May 2013; Justin Lecher xdsi-0.92-r1.ebuild, + metadata.xml: + Fix HOMEPAGE + +*xdsi-0.92-r1 (31 Jan 2012) + + 31 Jan 2012; Justin Lecher -files/0.91-gentoo.patch, + +xdsi-0.92-r1.ebuild, files/0.92-gentoo.patch, -xdsi-0.91.ebuild, + -xdsi-0.92.ebuild, metadata.xml: + Optionally depend on media-gfx/graphicsmagick[image], #314369; exchange RDEP + xpdf -> mupdf, #401289; drop old + +*xdsi-0.92 (17 May 2010) + + 17 May 2010; Justin Lecher +files/0.92-gentoo.patch, + +xdsi-0.92.ebuild: + Version Bump + +*xdsi-0.91 (17 Feb 2010) + + 17 Feb 2010; Justin Lecher + +files/0.91-gentoo.patch, +xdsi-0.91.ebuild, +metadata.xml: + Initial addition diff --git a/sci-chemistry/xdsstat-bin/ChangeLog b/sci-chemistry/xdsstat-bin/ChangeLog deleted file mode 100644 index 205240f0..00000000 --- a/sci-chemistry/xdsstat-bin/ChangeLog +++ /dev/null @@ -1,27 +0,0 @@ -# ChangeLog for sci-chemistry/xdsstat-bin -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsstat-bin/ChangeLog,v 1.4 2014/11/13 07:37:53 jlec Exp $ - - 13 Nov 2014; Justin Lecher xdsstat-bin-140225.ebuild: - Drop glibc from deps - - 15 Oct 2014; Pacho Ramos xdsstat-bin-140225.ebuild: - Support multilib providers for deps. Bump to EAPI=5. - -*xdsstat-bin-140225 (25 Feb 2014) - - 25 Feb 2014; Justin Lecher -xdsstat-bin-100513.ebuild, - +xdsstat-bin-140225.ebuild: - Version Bump - -*xdsstat-bin-100513 (30 May 2013) - - 30 May 2013; Justin Lecher +xdsstat-bin-100513.ebuild, - +metadata.xml: - Move from sci overlay to tree - -*xdsstat-bin-080429 (29 Jun 2009) - - 29 Jun 2009; Justin Lecher (jlec) - +xdsstat-bin-080429.ebuild, +metadata.xml: - initial checkin diff --git a/sci-chemistry/xdsstat-bin/ChangeLog-2015 b/sci-chemistry/xdsstat-bin/ChangeLog-2015 new file mode 100644 index 00000000..205240f0 --- /dev/null +++ b/sci-chemistry/xdsstat-bin/ChangeLog-2015 @@ -0,0 +1,27 @@ +# ChangeLog for sci-chemistry/xdsstat-bin +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsstat-bin/ChangeLog,v 1.4 2014/11/13 07:37:53 jlec Exp $ + + 13 Nov 2014; Justin Lecher xdsstat-bin-140225.ebuild: + Drop glibc from deps + + 15 Oct 2014; Pacho Ramos xdsstat-bin-140225.ebuild: + Support multilib providers for deps. Bump to EAPI=5. + +*xdsstat-bin-140225 (25 Feb 2014) + + 25 Feb 2014; Justin Lecher -xdsstat-bin-100513.ebuild, + +xdsstat-bin-140225.ebuild: + Version Bump + +*xdsstat-bin-100513 (30 May 2013) + + 30 May 2013; Justin Lecher +xdsstat-bin-100513.ebuild, + +metadata.xml: + Move from sci overlay to tree + +*xdsstat-bin-080429 (29 Jun 2009) + + 29 Jun 2009; Justin Lecher (jlec) + +xdsstat-bin-080429.ebuild, +metadata.xml: + initial checkin diff --git a/sci-chemistry/xia2/ChangeLog b/sci-chemistry/xia2/ChangeLog deleted file mode 100644 index 77eef4c0..00000000 --- a/sci-chemistry/xia2/ChangeLog +++ /dev/null @@ -1,68 +0,0 @@ -# ChangeLog for sci-chemistry/xia2 -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xia2/ChangeLog,v 1.16 2015/04/07 14:40:13 jlec Exp $ - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - sci-chemistry only - - 19 Jun 2013; Sébastien Fabbro metadata.xml: - Changed herd to sci-chemistry - - 14 Apr 2012; Andreas Schuerch xia2-0.3.3.1.ebuild: - x86 stable, see bug 375917, thanks all. - -*xia2-0.3.4.0 (28 Feb 2012) - - 28 Feb 2012; Justin Lecher +files/0.3.4.0-fix-syntax.patch, - +xia2-0.3.4.0.ebuild: - Version Bump - - 16 Oct 2011; Samuli Suominen xia2-0.3.3.1.ebuild: - amd64 restable - - 08 Oct 2011; Samuli Suominen xia2-0.3.3.1.ebuild: - Revert back to ~arch for security and libpng porting. - - 06 Oct 2011; Tony Vroon xia2-0.3.3.1.ebuild: - Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug - #351753. - -*xia2-0.3.3.3 (04 Oct 2011) - - 04 Oct 2011; Justin Lecher +files/0.3.3.3-fix-syntax.patch, - +xia2-0.3.3.3.ebuild: - Version Bump - - 23 Jul 2011; Justin Lecher xia2-0.3.3.1.ebuild: - Added pstins msg - -*xia2-0.3.3.1 (25 Jun 2011) - - 25 Jun 2011; Justin Lecher +files/0.3.3.1-fix-syntax.patch, - xia2-0.3.1.0.ebuild, xia2-0.3.1.6.ebuild, xia2-0.3.1.7.ebuild, - +xia2-0.3.3.1.ebuild, metadata.xml: - Version Bump - - 16 Jan 2011; Kacper Kowalik xia2-0.3.1.7.ebuild: - marked ~ppc wrt #303931 - -*xia2-0.3.1.7 (27 Jul 2010) - - 27 Jul 2010; Justin Lecher - +files/0.3.1.7-fix-syntax.patch, +xia2-0.3.1.7.ebuild: - Version bump - - 22 Apr 2010; Justin Lecher xia2-0.3.1.6.ebuild: - Keyworded for ~*-linux - -*xia2-0.3.1.6 (22 Apr 2010) - - 22 Apr 2010; Justin Lecher - +files/0.3.1.6-fix-syntax.patch, +xia2-0.3.1.6.ebuild: - Version Bump #316579, fixes for PYTHON ABIs things - -*xia2-0.3.1.0 (06 Feb 2010) - - 06 Feb 2010; Justin Lecher (jlec) - +files/0.3.1.0-fix-syntax.patch, +xia2-0.3.1.0.ebuild, +metadata.xml: - Splitted xia2 from ccp4 diff --git a/sci-chemistry/xia2/ChangeLog-2015 b/sci-chemistry/xia2/ChangeLog-2015 new file mode 100644 index 00000000..77eef4c0 --- /dev/null +++ b/sci-chemistry/xia2/ChangeLog-2015 @@ -0,0 +1,68 @@ +# ChangeLog for sci-chemistry/xia2 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xia2/ChangeLog,v 1.16 2015/04/07 14:40:13 jlec Exp $ + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + sci-chemistry only + + 19 Jun 2013; Sébastien Fabbro metadata.xml: + Changed herd to sci-chemistry + + 14 Apr 2012; Andreas Schuerch xia2-0.3.3.1.ebuild: + x86 stable, see bug 375917, thanks all. + +*xia2-0.3.4.0 (28 Feb 2012) + + 28 Feb 2012; Justin Lecher +files/0.3.4.0-fix-syntax.patch, + +xia2-0.3.4.0.ebuild: + Version Bump + + 16 Oct 2011; Samuli Suominen xia2-0.3.3.1.ebuild: + amd64 restable + + 08 Oct 2011; Samuli Suominen xia2-0.3.3.1.ebuild: + Revert back to ~arch for security and libpng porting. + + 06 Oct 2011; Tony Vroon xia2-0.3.3.1.ebuild: + Marked stable on AMD64 based on arch testing by Agostino "ago" Sarubbo in bug + #351753. + +*xia2-0.3.3.3 (04 Oct 2011) + + 04 Oct 2011; Justin Lecher +files/0.3.3.3-fix-syntax.patch, + +xia2-0.3.3.3.ebuild: + Version Bump + + 23 Jul 2011; Justin Lecher xia2-0.3.3.1.ebuild: + Added pstins msg + +*xia2-0.3.3.1 (25 Jun 2011) + + 25 Jun 2011; Justin Lecher +files/0.3.3.1-fix-syntax.patch, + xia2-0.3.1.0.ebuild, xia2-0.3.1.6.ebuild, xia2-0.3.1.7.ebuild, + +xia2-0.3.3.1.ebuild, metadata.xml: + Version Bump + + 16 Jan 2011; Kacper Kowalik xia2-0.3.1.7.ebuild: + marked ~ppc wrt #303931 + +*xia2-0.3.1.7 (27 Jul 2010) + + 27 Jul 2010; Justin Lecher + +files/0.3.1.7-fix-syntax.patch, +xia2-0.3.1.7.ebuild: + Version bump + + 22 Apr 2010; Justin Lecher xia2-0.3.1.6.ebuild: + Keyworded for ~*-linux + +*xia2-0.3.1.6 (22 Apr 2010) + + 22 Apr 2010; Justin Lecher + +files/0.3.1.6-fix-syntax.patch, +xia2-0.3.1.6.ebuild: + Version Bump #316579, fixes for PYTHON ABIs things + +*xia2-0.3.1.0 (06 Feb 2010) + + 06 Feb 2010; Justin Lecher (jlec) + +files/0.3.1.0-fix-syntax.patch, +xia2-0.3.1.0.ebuild, +metadata.xml: + Splitted xia2 from ccp4 diff --git a/sci-chemistry/xyza2pipe/ChangeLog b/sci-chemistry/xyza2pipe/ChangeLog deleted file mode 100644 index 5669aa80..00000000 --- a/sci-chemistry/xyza2pipe/ChangeLog +++ /dev/null @@ -1,16 +0,0 @@ -# ChangeLog for sci-chemistry/xyza2pipe -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xyza2pipe/ChangeLog,v 1.2 2013/11/28 07:57:06 jlec Exp $ - -*xyza2pipe-20121001 (28 Nov 2013) - - 28 Nov 2013; Justin Lecher +xyza2pipe-20121001.ebuild, - +files/xyza2pipe-20121001-gentoo.patch, metadata.xml: - Version Bump - -*xyza2pipe-20101129 (29 Nov 2010) - - 29 Nov 2010; Justin Lecher +files/20101129-gentoo.patch, - +xyza2pipe-20101129.ebuild, +metadata.xml: - New addition - diff --git a/sci-chemistry/xyza2pipe/ChangeLog-2015 b/sci-chemistry/xyza2pipe/ChangeLog-2015 new file mode 100644 index 00000000..5669aa80 --- /dev/null +++ b/sci-chemistry/xyza2pipe/ChangeLog-2015 @@ -0,0 +1,16 @@ +# ChangeLog for sci-chemistry/xyza2pipe +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xyza2pipe/ChangeLog,v 1.2 2013/11/28 07:57:06 jlec Exp $ + +*xyza2pipe-20121001 (28 Nov 2013) + + 28 Nov 2013; Justin Lecher +xyza2pipe-20121001.ebuild, + +files/xyza2pipe-20121001-gentoo.patch, metadata.xml: + Version Bump + +*xyza2pipe-20101129 (29 Nov 2010) + + 29 Nov 2010; Justin Lecher +files/20101129-gentoo.patch, + +xyza2pipe-20101129.ebuild, +metadata.xml: + New addition + -- cgit v1.2.3-65-gdbad