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| author |   Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-29 06:13:46 +0000 |
|---|---|---|
| committer | Jeffrey Gardner <je_fro@gentoo.org> | 2008-06-29 06:13:46 +0000 |
| commit | 90fbfc513b5af86faef1af2a3d8c550f45b4b1b7 (patch) | |
| tree | 3b12eaeb3e1c300d8ea5d4ce8c3b91a1a7821c30 /sci-biology/meme | |
| parent | import for testing (diff) | |
| download | je_fro-90fbfc513b5af86faef1af2a3d8c550f45b4b1b7.tar.gz je_fro-90fbfc513b5af86faef1af2a3d8c550f45b4b1b7.tar.bz2 je_fro-90fbfc513b5af86faef1af2a3d8c550f45b4b1b7.zip | |
add mpi stuff
svn path=/; revision=234
Diffstat (limited to 'sci-biology/meme')
| -rw-r--r-- | sci-biology/meme/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/meme/meme-3.5.7.ebuild | 37 |
2 files changed, 21 insertions, 18 deletions
diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest index 2a82c34..a4fa3db 100644 --- a/sci-biology/meme/Manifest +++ b/sci-biology/meme/Manifest @@ -1,5 +1,5 @@ AUX meme-3.5.7-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad SHA1 96530d5a58b8c01c99ae2b5463b7448758d7fb3d SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8 DIST meme_3.5.7.tar.gz 1101383 RMD160 ab2c38873d30490933151520b09bec0644d2c492 SHA1 f04f233be63a75a78ea878d025a0476099e496cd SHA256 b5d84d969f69dbe02f2636e2161c53212f7c9a5b141ae2ed759f99a322f221a9 -EBUILD meme-3.5.7.ebuild 2687 RMD160 43e134a5db21694768145a23c6bbbe21a5d76cd9 SHA1 2fd3e83ee2770ceb0120da0c5ee40edd32f7616c SHA256 7ae8871a9845c34855b5754eb90dc5af00a87ec057e87708ba5e339a084641e0 +EBUILD meme-3.5.7.ebuild 2689 RMD160 697a74a2d96123068db025e1c5bf647393e1090b SHA1 87d7c0338489e0eba99aa5b8466290f2eedca946 SHA256 e23be35ddc1b739061dc20ed485da440bf552248d23683d077be5ea966f2ca18 MISC ChangeLog 566 RMD160 74f3916e717ce84e593217bd53c0b99eb10a14c9 SHA1 799df7e3146993c26d897dd8224f302fd0970fcc SHA256 909bde96179b1488d0bcd854d9cd2d3a37a6e55c6c9756623fae0e77e8562dff MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 diff --git a/sci-biology/meme/meme-3.5.7.ebuild b/sci-biology/meme/meme-3.5.7.ebuild index a51a6aa..5a20531 100644 --- a/sci-biology/meme/meme-3.5.7.ebuild +++ b/sci-biology/meme/meme-3.5.7.ebuild @@ -1,20 +1,20 @@ # Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $ - -inherit autotools eutils toolchain-funcs +WEBAPP_OPTIONAL="yes" +inherit autotools eutils toolchain-funcs webapp DESCRIPTION="The MEME/MAST system - Motif discovery and search" HOMEPAGE="http://meme.sdsc.edu/meme" SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" LICENSE="meme" - +WEBAPP_MANUAL_SLOT="yes" SLOT="0" KEYWORDS="~x86 ~amd64" # Other possible USE flags include "debug", "client", "server", "web", # "queue". Other variables must be set at compile time, but only when # the Web server is built. Right now, Web server and client are disabled. -IUSE="mpi" +IUSE="mpi webapp" DEPEND=">=dev-lang/perl-5.6.1 mpi? ( virtual/mpi )" @@ -26,38 +26,41 @@ src_unpack() { cd "${S}" epatch "${FILESDIR}/${P}-Makefile.am.patch" -# epatch "${FILESDIR}/${P}-patch1.patch" -# epatch "${FILESDIR}/${P}-patch2.patch" einfo "Regenerating autotools files..." eautoreconf } src_compile() { - local EXTRA_CONF - # Build system is too bugy to make the programs use standard locations. + + # Build system is too buggy to make the programs use standard locations. # Put everything in "/opt" instead. + + local EXTRA_CONF EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}" EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}" # Connect hyperlinks to official Web site. EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme" - # Disable Web server, client and Web site. - EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web" # Parallel implementation if ! use mpi; then EXTRA_CONF="${EXTRA_CONF} --enable-serial" fi + if use webapp; then + EXTRA_CONF="${EXTRA_CONF} --enable-server --enable-client --enable-web" + fi + ./configure ${EXTRA_CONF} || die "Configure failed." - CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" make -e || die "Make failed." + + CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" emake -e || die "Make failed." # Install parallel files only on x86, otherwise the install fails with the error: # i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output - if [[ "${ARCH}" == "x86" ]] ; then - if use mpi; then - cd src/parallel - make || die "Parallel make failed." - fi - fi +# if [[ "${ARCH}" == "x86" ]] ; then +# if use mpi; then + cd src/parallel + CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" emake || die "Parallel make failed." +# fi +# fi } src_install() { |