Moving cluster to science overlay, importing new projects.

svn path=/; revision=27

5 files changed, 0 insertions, 120 deletions

diff --git a/sci-biology/cluster/Manifest b/sci-biology/cluster/Manifest
deleted file mode 100644
index 1afd573..0000000
--- a/sci-biology/cluster/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-AUX cluster-1.36-helpmenu-fix.patch 1287 RMD160 825d60b78925cc1c1d914bb0cea1a9953080f0c5 SHA1 45c42fe412ad428359f773e99382546ab2cfc2f9 SHA256 a90c835dd2d4a8196bffa67737c5755a5c5bed1be62772a76fcf0229ffaf47d4
-MD5 65a6e7833e5a0a489c7b017464b7fedc files/cluster-1.36-helpmenu-fix.patch 1287
-RMD160 825d60b78925cc1c1d914bb0cea1a9953080f0c5 files/cluster-1.36-helpmenu-fix.patch 1287
-SHA256 a90c835dd2d4a8196bffa67737c5755a5c5bed1be62772a76fcf0229ffaf47d4 files/cluster-1.36-helpmenu-fix.patch 1287
-DIST cluster-1.36.tar.gz 971192 RMD160 72dea711c915074bca8d6186af285f8640bdfd43 SHA1 69bb0de8e5fb9d6bf5ab29b53d65b21ab97cc4ce SHA256 76f73740a2c8725e704780643cfac11875c957ba85254114946dccf3326caccf
-EBUILD cluster-1.36.ebuild 1570 RMD160 bd912a8b586f03c1044ede796e532e4afce0611c SHA1 9c8b3b238abb7569e178744123a559b02ec283de SHA256 a0b01b1330d327f9d66a225903d1cf09a9885e056cce3492d96351e8fed1d794
-MD5 e4e8f1204d74f052d53cce5724a392f7 cluster-1.36.ebuild 1570
-RMD160 bd912a8b586f03c1044ede796e532e4afce0611c cluster-1.36.ebuild 1570
-SHA256 a0b01b1330d327f9d66a225903d1cf09a9885e056cce3492d96351e8fed1d794 cluster-1.36.ebuild 1570
-MISC metadata.xml 380 RMD160 a1c3ba6e6674088b1f06f1d8554b0457d5a95154 SHA1 eaf44b343cd9b336365d6a5858e41cf62dadd39b SHA256 4893d94442ec3c749ddb0fef6e62257e98b435e1709d4e71fc0f6c4ceea52dc2
-MD5 95aa0e81b9a24708648671ec7f94d3a6 metadata.xml 380
-RMD160 a1c3ba6e6674088b1f06f1d8554b0457d5a95154 metadata.xml 380
-SHA256 4893d94442ec3c749ddb0fef6e62257e98b435e1709d4e71fc0f6c4ceea52dc2 metadata.xml 380
-MD5 16e58679fbea16fbaf0e00d97797b449 files/digest-cluster-1.36 238
-RMD160 2d7b7d05ffc8e775ce7ffc7ffd6dfcb8f824edc5 files/digest-cluster-1.36 238
-SHA256 d611e29bd0456213c139ed17e12d1faaf0912da5140f82b2daa0903eee4c241f files/digest-cluster-1.36 238
diff --git a/sci-biology/cluster/cluster-1.36.ebuild b/sci-biology/cluster/cluster-1.36.ebuild
deleted file mode 100644
index abb6d8b..0000000
--- a/sci-biology/cluster/cluster-1.36.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-inherit autotools
-SRC_URI="${P}.tar.gz"
-
-DESCRIPTION="Clustering software for microarrays analisys"
-HOMEPAGE="http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm#ctv"
-LICENSE="as Python Licence"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="X"
-
-DEPEND="X? ( virtual/motif )"
-RDEPEND="X? ( x11-misc/xdg-utils app-text/xpdf )"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
-        einfo "Please obtain ${P}.tar.gz from ${HOMEPAGE} and place it in ${DISTDIR}"
-}
-
-src_unpack() {
-	unpack "${A}"
-	cd "${S}"
-	sed -i \
-		-e 's:^docdir = $(prefix)/cluster/doc:docdir = @docdir@:' \
-		-e 's:^htmldir = $(prefix)/cluster/html:htmldir = @htmldir@:' \
-		-e 's:^imagedir = $(prefix)/cluster/html/images:imagedir = @htmldir@/images:' \
-		-e 's:^fileformatdir = $(prefix)/cluster:fileformatdir = @docdir@:' \
-		X11/Makefile.in || die "sed failed"
-
-	epatch "${FILESDIR}/${P}-helpmenu-fix.patch" || die "failed to patch helpmenu"
-
-}
-
-src_compile() {
-
-	econf $(use_with X x) \
-		--docdir="/usr/share/doc/${P}" \
-		--htmldir="/usr/share/doc/${P}/html" \
-		|| die "econf failed"
-
-	emake || die "emake failed"
-}
-
-src_install() {
-	cd ${S}
-	emake DESTDIR="${D}" install || die "Install failed"
-
-	dodoc README COPYING AUTHORS ChangeLog NEWS TODO || die "failed to install docs"
-	insinto /usr/share/doc/${P}/examples
-	doins example/example.c example/README || die "failed to install docs"
-	insinto /usr/share/doc/${P}
-	doins doc/cluster.pdf || die "failed to install docs"
-
-}
diff --git a/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch b/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch
deleted file mode 100644
index 69f3a96..0000000
--- a/sci-biology/cluster/files/cluster-1.36-helpmenu-fix.patch
+++ /dev/null
@@ -1,30 +0,0 @@
---- X11/gui.c	2007-05-05 00:21:30.000000000 -0500
-+++ X11/gui.c-new	2007-08-09 04:25:53.000000000 -0500
-@@ -1786,15 +1786,15 @@
- {   int item_no = (int) client_data;
-     switch (item_no)
-     {   case CMD_HELP_HTMLHELP:
--        {   system("netscape "PREFIX"/cluster/html/index.html &");
-+        {   system("xdg-open "PREFIX"/share/doc/cluster-1.36/html/index.html &");
- 	    break;
- 	}
-         case CMD_HELP_MANUAL:
--        {   system("acroread "PREFIX"/cluster/doc/cluster3.pdf &");
-+        {   system("xpdf "PREFIX"/share/doc/cluster-1.36/cluster3.pdf &");
- 	    break;
- 	}
-         case CMD_HELP_DOWNLOAD:
--        {   system("netscape http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/manual/index.html &");
-+        {   system("xdg-open http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/manual/index.html &");
- 	    break;
- 	}
-         case CMD_HELP_FILEFORMAT:
-@@ -1852,7 +1852,7 @@
- 	    XtManageChild(widget);
-             free(helptext);
- 	    n = 0;
--	    pixmap = XmGetPixmap(XtScreen(dialog),PREFIX"/cluster/format.xpm",0,0);
-+	    pixmap = XmGetPixmap(XtScreen(dialog),PREFIX"/share/doc/cluster-1.36/format.xpm",0,0);
- 	    XtSetArg(args[n], XmNx, 10); n++;
- 	    XtSetArg(args[n], XmNy, 410); n++;
- 	    XtSetArg(args[n],XmNlabelType, XmPIXMAP); n++;
diff --git a/sci-biology/cluster/files/digest-cluster-1.36 b/sci-biology/cluster/files/digest-cluster-1.36
deleted file mode 100644
index 4611127..0000000
--- a/sci-biology/cluster/files/digest-cluster-1.36
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 9333963ab3217bb3b51de5c491078563 cluster-1.36.tar.gz 971192
-RMD160 72dea711c915074bca8d6186af285f8640bdfd43 cluster-1.36.tar.gz 971192
-SHA256 76f73740a2c8725e704780643cfac11875c957ba85254114946dccf3326caccf cluster-1.36.tar.gz 971192
diff --git a/sci-biology/cluster/metadata.xml b/sci-biology/cluster/metadata.xml
deleted file mode 100644
index 2971c5b..0000000
--- a/sci-biology/cluster/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer>
-<email>je_fro@gentoo.org</email>
-<name>Jeff Gardner</name>
-</maintainer>
-<longdescription lang="en">
-Cluster provides an interface to access methods of gene expression data
-analysis.
-</longdescription>
-</pkgmetadata>
-