latest version in the tree

svn path=/; revision=105

5 files changed, 0 insertions, 163 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
deleted file mode 100644
index 2bc3722..0000000
--- a/sci-biology/seaview/ChangeLog
+++ /dev/null
@@ -1,80 +0,0 @@
-# ChangeLog for sci-biology/seaview
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.11 2007/10/21 04:34:16 je_fro Exp $
-
-*seaview-20070919 (21 Oct 2007)
-
-  21 Oct 2007; <jeff@gentoo.org> seaview-20041220.ebuild,
-  seaview-20060213.ebuild, +seaview-20070919.ebuild:
-  Bumping to latest version which contains several new features.
-
-  25 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> seaview-20041220.ebuild,
-  seaview-20060213.ebuild:
-  QA: Fixed assignment of CFLAGS. Makefile respects CXXFLAGS now. Fixed
-  include and library paths.
-
-  22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
-  Redigest for Manifest2
-
-  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
-  -seaview-20050713.ebuild:
-  Pruned old version.
-
-*seaview-20060213 (08 Mar 2006)
-
-  08 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>;
-  +seaview-20060213.ebuild:
-  Bump to most recent modification date on upstream's unversioned tarball.
-  Fixes problem with file-open dialog not finding files, among others.
-
-*seaview-20050713 (07 Aug 2005)
-
-  07 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
-  +seaview-20050713.ebuild:
-  New version.
-
-  24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org>
-  seaview-20041220.ebuild:
-  Stable on ppc.
-
-  30 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
-  seaview-20041220.ebuild:
-  Ebuild cleanup.
-
-*seaview-20041220 (09 Jan 2005)
-
-  09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> -files/29seaview,
-  -seaview-1-r1.ebuild, +seaview-20041220.ebuild:
-  Changed versioning scheme. (Upstream does not use version numbers.)
-
-*seaview-1-r1 (23 Dec 2004)
-
-  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +files/29seaview, +seaview-1-r1.ebuild:
-  Moved from app-sci/seaview to sci-biology/seaview.
-
-  22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> seaview-1-r1.ebuild:
-  Added to ~amd64, bug #72078
-
-  31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> seaview-1-r1.ebuild:
-  Added to x86.
-
-*seaview-1 (24 Jun 2004)
-
-  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  seaview-1-r1.ebuild, metedata.xml:
-  Added app-sci/clustalw as a mandatory dependency.
-  Set maintainer (ribosome).
-
-*seaview-1 (24 Jun 2004)
-
-  24 Jun 2004; David Holm <dholm@gentoo.org> seaview-1.ebuild:
-  Added to ~ppc.
-
-*seaview-1 (23 Jun 2004)
-
-  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  seaview-1.ebuild, metadata.xml, files/29seaview :
-  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
-  Reference: Gentoo Bugzilla, bug #54055
-
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
deleted file mode 100644
index b6c1869..0000000
--- a/sci-biology/seaview/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST seaview-20070919.tar.bz2 129867 RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f SHA1 db2d36e6ef7cd446caf79cb93258c3b72b067248 SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33
-EBUILD seaview-20070919.ebuild 1305 RMD160 558d9bc2c0d6627e89148346a2b03f077c1db260 SHA1 b2d9374b7bbee21986e30924e9bf51a4191d9130 SHA256 4da48a3a540e0eb7858551f10f33872812a68740abd449339fd77e6f37689dd9
-MD5 85c7f4cf9af563d494157949aed3621e seaview-20070919.ebuild 1305
-RMD160 558d9bc2c0d6627e89148346a2b03f077c1db260 seaview-20070919.ebuild 1305
-SHA256 4da48a3a540e0eb7858551f10f33872812a68740abd449339fd77e6f37689dd9 seaview-20070919.ebuild 1305
-MISC ChangeLog 2580 RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f SHA1 402ac9d67c48a77d8ad9e4981df2cb2e2377c9df SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3
-MD5 9eb13bbfc43618b0143c056a4eb54416 ChangeLog 2580
-RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f ChangeLog 2580
-SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3 ChangeLog 2580
-MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
-MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
-RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
-SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622
-MD5 45aa688396038db1079a932bd2cdf57c files/digest-seaview-20070919 253
-RMD160 530dd5235936f0920209c8e101fb5b8aee19de28 files/digest-seaview-20070919 253
-SHA256 798c5db6eb97a43719bc4bff4bab0e0043b1cb7cf3c72c092b9d256dd3229e9d files/digest-seaview-20070919 253
diff --git a/sci-biology/seaview/files/digest-seaview-20070919 b/sci-biology/seaview/files/digest-seaview-20070919
deleted file mode 100644
index e8fa4d2..0000000
--- a/sci-biology/seaview/files/digest-seaview-20070919
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 aa7a0d87d2cf4a69d3b639ac9c1aef06 seaview-20070919.tar.bz2 129867
-RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f seaview-20070919.tar.bz2 129867
-SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 seaview-20070919.tar.bz2 129867
diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml
deleted file mode 100644
index 64a7c16..0000000
--- a/sci-biology/seaview/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-	<maintainer>
-		<email>ribosome@gentoo.org</email>
-		<name>Olivier Fisette</name>
-	</maintainer>
-	<longdescription>
-		SeaView is a graphical multiple sequence alignment editor developped by
-		Manolo Gouy. SeaView is able to read and write various alignment
-		formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to
-		manually edit the alignment, and also to run DOT-PLOT or CLUSTALW
-		programs to locally improve the alignment.
-	</longdescription>
-</pkgmetadata>
diff --git a/sci-biology/seaview/seaview-20070919.ebuild b/sci-biology/seaview/seaview-20070919.ebuild
deleted file mode 100644
index 69bf14d..0000000
--- a/sci-biology/seaview/seaview-20070919.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20070919.ebuild,v 1.1 2007/10/21 04:34:16 je_fro Exp $
-
-inherit toolchain-funcs multilib
-
-DESCRIPTION="A graphical multiple sequence alignment editor"
-HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="~x86 ~ppc ~amd64"
-IUSE=""
-
-DEPEND="x11-libs/fltk
-	media-libs/pdflib
-	sci-biology/muscle
-	sci-biology/clustalw"
-
-#	=media-libs/pdflib-6.0*
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS.
-	# Fix invocation of C++ compiler.
-	# Fix include and library paths.
-	sed -i \
-		-e '/^FLTK/d' \
-		-e '/^X11/d' \
-		-e 's:#HELP_NOT:HELP_NOT:' \
-		-e "s:bge\/mgouy\/seaview:usr/share/${PN}:" \
-		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
-		-e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \
-		-e 's:-I$(X11)/include:-I/usr/include/X11R6:' \
-		-e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \
-		-e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \
-		-e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \
-		Makefile || die
-}
-
-src_install() {
-	dobin seaview seaview_align.sh
-	insinto "/usr/share/${PN}"
-	doins protein.mase seaview.help
-}