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authorJeffrey Gardner <je_fro@gentoo.org>2008-06-26 16:43:32 +0000
committerJeffrey Gardner <je_fro@gentoo.org>2008-06-26 16:43:32 +0000
commitce7512f6240216a7f6c9468af3cfbf95d92c029a (patch)
treed6a0da00d9dce749e5197ab081b9f1bcc91a9737 /sci-biology
parentobsolete drivers (diff)
downloadje_fro-ce7512f6240216a7f6c9468af3cfbf95d92c029a.tar.gz
je_fro-ce7512f6240216a7f6c9468af3cfbf95d92c029a.tar.bz2
je_fro-ce7512f6240216a7f6c9468af3cfbf95d92c029a.zip
try relying on virtual/mpi
svn path=/; revision=230
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/meme/Manifest25
-rw-r--r--sci-biology/meme/meme-3.5.4-r1.ebuild (renamed from sci-biology/meme/meme-3.5.4.ebuild)11
2 files changed, 9 insertions, 27 deletions
diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest
index 42e9a66..75d2b28 100644
--- a/sci-biology/meme/Manifest
+++ b/sci-biology/meme/Manifest
@@ -1,28 +1,9 @@
AUX meme-3.5.4-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad SHA1 96530d5a58b8c01c99ae2b5463b7448758d7fb3d SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8
-MD5 1340a30b4b010637181605a11e78a950 files/meme-3.5.4-Makefile.am.patch 377
-RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad files/meme-3.5.4-Makefile.am.patch 377
-SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8 files/meme-3.5.4-Makefile.am.patch 377
AUX meme-3.5.4-patch1.patch 8019 RMD160 c443da2f16552c488b77e897bdae543839a0738d SHA1 d37473061f4294d342521570729d65421ead0d99 SHA256 7f42f3de330e19630ab5eb335043749afd94652b8d2b1564ce8cd6856acf81e6
-MD5 491211c1a3d87abd057280406f95220c files/meme-3.5.4-patch1.patch 8019
-RMD160 c443da2f16552c488b77e897bdae543839a0738d files/meme-3.5.4-patch1.patch 8019
-SHA256 7f42f3de330e19630ab5eb335043749afd94652b8d2b1564ce8cd6856acf81e6 files/meme-3.5.4-patch1.patch 8019
AUX meme-3.5.4-patch2.patch 2496 RMD160 1d492e01a9e06aa0564e2c15235eb49f28f4d2b7 SHA1 cbc691788e2d30cde438f15d94a97f637fdce4a5 SHA256 2571bff727505cddfe59aefa931f2b2436ed2a2daf1e35b5a1d6c6014a753a21
-MD5 7b0765e479af87218368f29ae7041fb8 files/meme-3.5.4-patch2.patch 2496
-RMD160 1d492e01a9e06aa0564e2c15235eb49f28f4d2b7 files/meme-3.5.4-patch2.patch 2496
-SHA256 2571bff727505cddfe59aefa931f2b2436ed2a2daf1e35b5a1d6c6014a753a21 files/meme-3.5.4-patch2.patch 2496
+AUX meme_3.5.4.patch_1 7443 RMD160 6d72e74d6139d8c29bfcda9da750dc454f08ef0a SHA1 336c91ad5ecd44d49de0e940bb18315b62569a2b SHA256 306cee9c3c831494cf264ded84d248e5773c9a56d259a02e8da9c6dc31457f04
+AUX meme_3.5.4.patch_2 2074 RMD160 56520122dd1d35afa444414ea57199924e8492b5 SHA1 29edf295100721006aea8b76ff4c5bdfb9312020 SHA256 bf74f09bcd6c247f464f15b17e3a0e8f95149fdc5b92d8f17d06ede430d2d7be
DIST meme_3.5.4.tar.gz 1045501 RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 SHA1 d780dba0b900f840a599cf69cfeba4eefd4856b4 SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86
-EBUILD meme-3.5.4.ebuild 2778 RMD160 db6f29dd51ecf5bac56f064c75d788b36f56a83a SHA1 cebab3898c38b9396b2cf591f8ac49ff6ddc106b SHA256 05bd30158cc5b79c2de4f2e97c523f9cff48131965c992f24137bb2e36e006e0
-MD5 c71dbb29f70e8dfa3bc3ab607c33f226 meme-3.5.4.ebuild 2778
-RMD160 db6f29dd51ecf5bac56f064c75d788b36f56a83a meme-3.5.4.ebuild 2778
-SHA256 05bd30158cc5b79c2de4f2e97c523f9cff48131965c992f24137bb2e36e006e0 meme-3.5.4.ebuild 2778
+EBUILD meme-3.5.4-r1.ebuild 2822 RMD160 2855f8b8c529002cb498639f51779294d0d4f41e SHA1 ea3e3b23dce7ce2b3bbca1ea3b393fb3da283e1e SHA256 c3370cf5ad110a7a3e4a5b0c53ed8823c4b9e151dcf79aa3a46f8a5a0e80b0c7
MISC ChangeLog 566 RMD160 74f3916e717ce84e593217bd53c0b99eb10a14c9 SHA1 799df7e3146993c26d897dd8224f302fd0970fcc SHA256 909bde96179b1488d0bcd854d9cd2d3a37a6e55c6c9756623fae0e77e8562dff
-MD5 233146864b46de91b59ff4a506da21d7 ChangeLog 566
-RMD160 74f3916e717ce84e593217bd53c0b99eb10a14c9 ChangeLog 566
-SHA256 909bde96179b1488d0bcd854d9cd2d3a37a6e55c6c9756623fae0e77e8562dff ChangeLog 566
MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 1eaad7de1310f43b70c0414c120687f6 files/digest-meme-3.5.4 235
-RMD160 ed97244306a01084ca6973c50c49726724212632 files/digest-meme-3.5.4 235
-SHA256 98b3e51f5544aa86ee4cfed70da0b3d9068cd677c3744e750b4f0bee2be5be8b files/digest-meme-3.5.4 235
diff --git a/sci-biology/meme/meme-3.5.4.ebuild b/sci-biology/meme/meme-3.5.4-r1.ebuild
index 1932bd7..f2e9e8d 100644
--- a/sci-biology/meme/meme-3.5.4.ebuild
+++ b/sci-biology/meme/meme-3.5.4-r1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.4-r1.ebuild,v 1.1 2007/09/17 02:41:56 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.4-r1.ebuild,v 1.4 2008/06/14 12:34:50 markusle Exp $
-inherit eutils toolchain-funcs
+inherit autotools eutils toolchain-funcs
DESCRIPTION="The MEME/MAST system - Motif discovery and search"
HOMEPAGE="http://meme.sdsc.edu/meme"
@@ -18,7 +18,7 @@ IUSE="mpi"
# Works only with LAM-MPI.
DEPEND=">=dev-lang/perl-5.6.1
- mpi? ( sys-cluster/lam-mpi )"
+ mpi? ( virtual/mpi )"
S="${WORKDIR}/${PN}_${PV}"
@@ -29,6 +29,7 @@ src_unpack() {
epatch "${FILESDIR}/${P}-Makefile.am.patch"
epatch "${FILESDIR}/${P}-patch1.patch"
epatch "${FILESDIR}/${P}-patch2.patch"
+ einfo "Regenerating autotools files..."
eautoreconf
}
@@ -65,7 +66,7 @@ src_install() {
exeinto "/opt/${PN}/bin"
if [[ "${ARCH}" == "x86" ]] ; then
if use mpi; then
- doexe "${S}/src/parallel/${PN}_p" || \
+ doexe "${S}/src/parallel/${PN}_p" || \
die "Failed to install parallel MEME implementation."
fi
fi