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Diffstat (limited to 'sci-biology/ncbi-tools/ChangeLog')
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diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog deleted file mode 100644 index ed0294c..0000000 --- a/sci-biology/ncbi-tools/ChangeLog +++ /dev/null @@ -1,334 +0,0 @@ -# ChangeLog for sci-biology/ncbi-tools -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.53 2007/06/05 11:00:49 armin76 Exp $ - - 05 Jun 2007; Raúl Porcel <armin76@gentoo.org> ncbi-tools-20060507.ebuild: - alpha stable wrt #152292 - - 10 Mar 2007; Olivier Fisette <ribosome@gentoo.org> - +files/ncbi-tools-extra_vib.patch: - Added missing patch. Thanks to Walter Meinl <wuno@lsvw.de> for reporting - (bug #170202). - -*ncbi-tools-20061015-r1 (09 Mar 2007) - - 09 Mar 2007; Olivier Fisette <ribosome@gentoo.org> - -ncbi-tools-20061015.ebuild, +ncbi-tools-20061015-r1.ebuild: - Install ans2all utility. Added support for compiling/installing arbitrary - NCBI utilities. Thanks to José María Fernández González - <jmfernandez@cnio.es> for his work (see bug #169822). Pruned old version. - - 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> - -ncbi-tools-20050605-r2.ebuild: - Pruned old version. - -*ncbi-tools-20061015 (03 Nov 2006) - - 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> - +ncbi-tools-20061015.ebuild: - New upstream version. - - 30 Oct 2006; Christian Faulhammer <opfer@gentoo.org> - ncbi-tools-20060507.ebuild: - stable x86 as requested in bug #152292 - - 25 Oct 2006; Lars Weiler <pylon@gentoo.org> ncbi-tools-20060507.ebuild: - Stable on ppc; bug #152292. - - 25 Oct 2006; Fabian Groffen <grobian@gentoo.org> - ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild: - Dropped ppc-macos, see you in prefix. - - 24 Oct 2006; Fabian Groffen <grobian@gentoo.org> - ncbi-tools-20060507.ebuild: - Dropped ppc-macos, we don't have pmake - - 24 Oct 2006; Jeff Gardner <je_fro@gentoo.org> ncbi-tools-20060507.ebuild: - Stable on amd64. - - 23 Oct 2006; Markus Rothe <corsair@gentoo.org> ncbi-tools-20060507.ebuild: - Stable on ppc64; bug #152292 - - 23 Oct 2006; Jeff Gardner <je_fro@gentoo.org> ncbi-tools-20060507.ebuild: - Stable on sparc - bug #152292 - - 27 Jun 2006; Brent Baude <ranger@gentoo.org> ncbi-tools-20060507.ebuild: - Keywording ncbi-tools-20060507 ~ppc64 for bug #138082 - - 27 Jun 2006; Olivier Fisette <ribosome@gentoo.org> - -files/ncbi-tools-20050605-lop.patch, +files/ncbi-tools-lop.patch, - ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild, - ncbi-tools-20060507.ebuild: - Fixed ppc64 lop patch (my mistake). - -*ncbi-tools-20060507 (26 Jun 2006) - - 26 Jun 2006; Olivier Fisette <ribosome@gentoo.org> - +files/ncbi-tools-asn2all.patch, +ncbi-tools-20060507.ebuild: - New upstream version. Switched from GNU make to pmake as GNU make 3.81 is - confused by some Makefiles (fixes bug #136904, thanks to Greg Wilson for - reporting). Compile and install asn2all (fixes bug #136206, thanks to José - María Fernández González for the suggestion). Minor bugfixes and ebuild - clean-up. ppc64 keyword dropped as pmake is not available for that arch. - - 01 Feb 2006; Donnie Berkholz <spyderous@gentoo.org>; - ncbi-tools-20050605.ebuild, ncbi-tools-20050605-r2.ebuild: - (#121066) Port to modular X. Add some die messages to -r2 so the die's - aren't completely unhelpful. Fix the path expansion for html docs so it - doesn't break the installation -- not sure how it got committed as is: - {*.html *.gif} is missing a comma. - - 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> - -ncbi-tools-20050605-r1.ebuild: - Removed buggy version. - -*ncbi-tools-20050605-r2 (14 Dec 2005) - - 14 Dec 2005; Olivier Fisette <ribosome@gentoo.org> - +ncbi-tools-20050605-r2.ebuild: - Fixed file collisions with "dev-libs/libpcre" (bug #115463). - - 16 Nov 2005; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20050605-r1.ebuild: - Readded ~sparc (closes bug #111807). - - 15 Nov 2005; Fernando J. Pereda <ferdy@gentoo.org> - ncbi-tools-20050605-r1.ebuild: - re-add ~alpha wrt bug #111807 - -*ncbi-tools-20050605-r1 (15 Nov 2005) - - 15 Nov 2005; Olivier Fisette <ribosome@gentoo.org> - +ncbi-tools-20050605-r1.ebuild: - Added MPI support for the BLAST family of programs. Thanks to Brady - Catherman <bradyc@uidaho.edu> for his work (fixes bug #111807). - - 09 Nov 2005; Jason Wever <weeve@gentoo.org> ncbi-tools-20050605.ebuild: - Stable on SPARC wrt bug #108334. - - 22 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -files/21ncbi, - -ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20050429.ebuild: - Pruning old versions. - - 22 Oct 2005; Fabian Groffen <grobian@gentoo.org> - ncbi-tools-20050605.ebuild: - Marked ppc-macos per bug #108334 - - 18 Oct 2005; Aron Griffis <agriffis@gentoo.org> - ncbi-tools-20050605.ebuild: - Mark 20050605 stable on alpha - - 12 Oct 2005; Michael Hanselmann <hansmi@gentoo.org> - ncbi-tools-20050605.ebuild: - Stable on ppc. - - 11 Oct 2005; Luis Medinas <metalgod@gentoo.org> - ncbi-tools-20050605.ebuild: - Marked Stable on amd64 - - 09 Oct 2005; Mark Loeser <halcy0n@gentoo.org> ncbi-tools-20050605.ebuild: - Stable on x86 - - 07 Oct 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050605.ebuild: - Marking ncbi-tools-200506 ppc64 stable for bug 108334 - - 19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml: - Maintainer changed from Stephen Diener (MIA) to Olivier Fisette. - - 16 Sep 2005; Aron Griffis <agriffis@gentoo.org> - ncbi-tools-20050429.ebuild: - Mark 20050429 stable on alpha - - 19 Aug 2005; Michael Hanselmann <hansmi@gentoo.org> - ncbi-tools-20050429.ebuild: - Removed from ppc (xlc not available). - - 09 Aug 2005; Brent Baude <ranger@gentoo.org> - +files/ncbi-tools-20050605-lop.patch, - -files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild: - For the ebuild ncbi-tools-20050605, I was asked to remove the gz patch and - submit it as plain text. This commit will remove the gz patch and replace it - with a plain text one. The patch name change is also reflected in the - ebuild. - - 08 Aug 2005; Brent Baude <ranger@gentoo.org> - +files/ncbi-tools-20050605-lop.patch.gz, ncbi-tools-20050605.ebuild: - Added patch for 20050506 which when ppc64, will patch the makefile to use - gcc instead of the default xlc (IBM compiler) which doesnt exist on gentoo. - - 08 Aug 2005; Brent Baude <ranger@gentoo.org> ncbi-tools-20050429.ebuild: - ncbi-tools-20050429.ebuild does not compile on ppc64; will fix later ebuild - -*ncbi-tools-20050605 (06 Aug 2005) - - 06 Aug 2005; Olivier Fisette <ribosome@gentoo.org> - -ncbi-tools-20040616.ebuild, ncbi-tools-20050429.ebuild, - +ncbi-tools-20050605.ebuild: - New version. Added 20050429 to x86. Removed old version. - - 09 Jun 2005; Markus Rothe <corsair@gentoo.org> - ncbi-tools-20041020-r1.ebuild: - Stable on ppc64 - - 02 Jun 2005; Olivier Fisette <ribosome@gentoo.org> ChangeLog: - Use "virtual/motif" instead of "x11-libs/openmotif". - - 16 May 2005; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20050429.ebuild: - Fixed CFLAGS not being applied properly (bug #92564). - -*ncbi-tools-20050429 (13 May 2005) - - 13 May 2005; Olivier Fisette <ribosome@gentoo.org> - +ncbi-tools-20050429.ebuild: - New version. - - 29 Apr 2005; Markus Rothe <corsair@gentoo.org> - ncbi-tools-20041020-r1.ebuild: - Added ~ppc64 to KEYWORDS - - 24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org> - ncbi-tools-20041020-r1.ebuild: - Stable on ppc. - -*ncbi-tools-20041020-r1 (06 Mar 2005) - - 06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +files/21ncbi-r1, - +ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20041020.ebuild: - Added the "BLASTMAT" environment variable to the env.d file. - - 02 Mar 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20041020.ebuild: - Stable ppc-macos - - 01 Mar 2005; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20041020.ebuild: - Added to x86. - - 02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild: - Stable ppc-macos - - 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20041020.ebuild: - Ebuild cleanup. - -*ncbi-tools-20041020 (18 Jan 2005) - - 18 Jan 2005; Olivier Fisette <ribosome@gentoo.org> - +ncbi-tools-20041020.ebuild: - New version. - - 02 Jan 2005; Olivier Fisette <ribosome@gentoo.org> : - Added to x86. Use toolchain-funcs rather than gcc eclass. - - 29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> : - Change encoding to UTF-8 for GLEP 31 compliance - -*ncbi-tools-20040616 (23 Dec 2004) - - 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, - +files/21ncbi, +files/ncbirc, +ncbi-tools-20040616.ebuild: - Moved from app-sci/ncbi-tools to sci-biology/ncbi-tools. - - 30 Nov 2004; <j4rg0n@gentoo.org> ncbi-tools-20040616.ebuild: - Keyworded ~ppc-macos. - - 22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> - ncbi-tools-20040616.ebuild: - Added to ~amd64 - - 14 Oct 2004; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20040616.ebuild: - Use gcc-getCC from gcc.eclass rather than ${CC}. - - 04 Oct 2004; Olivier Fisette <ribosome@gentoo.org> - ncbi-tools-20040616.ebuild: - Fixed potential bug in "SRC_URI". - -*ncbi-tools-20040616 (03 Oct 2004) - - 03 Oct 2004; Olivier Fisette <ribosome@gentoo.org> files/21ncbi, - -files/dot-ncbirc, +files/ncbirc, -ncbi-tools-20031103.ebuild, - -ncbi-tools-20040202-r1.ebuild, +ncbi-tools-20040616.ebuild: - Updated version and new ebuild. This fixes bug #65941. - - 02 Jun 2004; Aron Griffis <agriffis@gentoo.org> ncbi-tools-20031103.ebuild, - ncbi-tools-20040202-r1.ebuild: - Fix use invocation - - 05 May 2004; Bryan Østergaard <kloeri@gentoo.org> - ncbi-tools-20040202-r1.ebuild: - Stable on alpha. - - 19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> - ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild, - ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild, - ncbi-tools-20040202.ebuild: - Cleanup, removing S=... with no effect - - 30 Mar 2004; Donnie Berkholz <spyderous@gentoo.org>; - ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild, - ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild, - ncbi-tools-20040202.ebuild: - Change x11-base/xfree dependency to virtual/x11. - - 21 Mar 2004; Martin Holzer <mholzer@gentoo.org> - ncbi-tools-04222003-r2.ebuild, ncbi-tools-20030422.ebuild, - ncbi-tools-20031103.ebuild, ncbi-tools-20040202-r1.ebuild, - ncbi-tools-20040202.ebuild: - adding categorie. see 45110 for details - -*ncbi-tools-20040202-r1 (06 Feb 2004) - - 06 Feb 2004; Stephen Diener <sediener@gentoo.org> - ncbi-tools-20040202-r1.ebuild: - Replaced buggy tarball with new one. Bumped revision to propogate. - -*ncbi-tools-20040202 (05 Feb 2004) - - 05 Feb 2004; Stephen Diener <sediener@gentoo.org> - ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003.ebuild, - ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild, - ncbi-tools-20040202.ebuild: - Bumped 20031103 to x86, removed old ebuilds, added new release 20040202 - -*ncbi-tools-20040202 (04 Feb 2004) - - 04 Feb 2004; Stephen Diener <sediener@gentoo.org> - ncbi-tools-20031103.ebuild, ncbi-tools-20040202.ebuild: - Version bump. Changes -O3 -> -O2 so X11 apps will work. - - 11 Jan 2004; Heinrich Wendel <lanius@gentoo.org> - ncbi-tools-04222003-r1.ebuild, ncbi-tools-04222003-r2.ebuild, - ncbi-tools-20030422.ebuild, ncbi-tools-20031103.ebuild: - fixed motif dep - -*ncbi-tools-20031103 (13 Dec 2003) - - 13 Dec 2003; Stephen Diener <sediener@gentoo.org> - ncbi-tools-20031103.ebuild: - Added november release of ncbi-tools (blast-2.2.6 included); - Added support for -X - -*ncbi-tools-20030422 (11 Nov 2003) - - 11 Nov 2003; <sediener@gentoo.org> ncbi-tools-20030422.ebuild: - added bl2seq to list of installed binaries; changed date format from 04222003 - to 20030422; renamed files to have date appended to not collide and changed - SRC_URI to mirror://gentoo/ - -*ncbi-tools-04222003-r2 (08 Oct 2003) - - 08 Oct 2003; Robin H. Johnson <robbat2@gentoo.org> - ncbi-tools-04222003-r2.ebuild: - modified patch from #30656, corrected two pathes in the postinst message - -*ncbi-tools-04222003-r1 (05 May 2003) - - 05 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003-r1.ebuild : - A few enhancements from Gontran Zepeda <gontran@gontran.net>. - -*ncbi-tools-04222003 (03 May 2003) - - 03 May 2003; Jon Portnoy <avenj@gentoo.org> ncbi-tools-04222003 : - Initial important. Ebuild submitted by Steve Diener - <sediener@unity.ncsu.edu>. |