diff options
Diffstat (limited to 'sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch')
| -rw-r--r-- | sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch new file mode 100644 index 0000000..cb7d1ad --- /dev/null +++ b/sci-biology/ncbi-tools/files/ncbi-tools-extra_vib.patch @@ -0,0 +1,37 @@ +--- ncbi-20061015/make/makedis.csh 2006-09-14 17:37:03.000000000 +0200 ++++ ncbi/make/makedis.csh 2007-03-07 21:00:36.090836460 +0100 +@@ -485,6 +485,34 @@ + + set net_stat = $status + ++if ( $net_stat == 0 ) then ++ # Compile additional tools, usually hidden ++ if ( ! $?EXTRA_VIB ) then ++ set EXTRA_VIB = ( asn2all ) ++ endif ++ ++ if ("$?NCBI_MT_OTHERLIBS" == "1") then ++ set CMD='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ THREAD_OBJ=$NCBI_THREAD_OBJ \ ++ THREAD_OTHERLIBS=\"$NCBI_MT_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB' ++ else ++ set CMD='make $MFLG -f makenet.unx \ ++ CFLAGS1=\"$NCBI_OPTFLAG $NCBI_CFLAGS1 $OGL_INCLUDE\" \ ++ LDFLAGS1=\"$NCBI_LDFLAGS1\" SHELL=\"$NCBI_MAKE_SHELL\" \ ++ AR=\"$NCBI_AR\" CC=\"$NCBI_CC\" RAN=\"$NCBI_RANLIB\" OTHERLIBS=\"$NCBI_OTHERLIBS\" \ ++ NETENTREZVERSION=\"$NETENTREZVERSION\" $NET_VIB $EXTRA_VIB' ++ endif ++ eval echo $CMD ++ eval echo $CMD | sh ++ ++ set net_stat = $status ++ ++endif ++ + if ($make_stat != 0 || $demo_stat != 0 || $threaded_demo_stat != 0 || $net_stat != 0) then + echo FAILURE primary make status = $make_stat, demo = $demo_stat, threaded_demo = $threaded_demo_stat, net = $net_stat + cat <<EOF |