diff options
Diffstat (limited to 'sci-chemistry/namd/files/namd-2.7-gentoo.patch')
| -rw-r--r-- | sci-chemistry/namd/files/namd-2.7-gentoo.patch | 117 |
1 files changed, 0 insertions, 117 deletions
diff --git a/sci-chemistry/namd/files/namd-2.7-gentoo.patch b/sci-chemistry/namd/files/namd-2.7-gentoo.patch deleted file mode 100644 index 733ee8e..0000000 --- a/sci-chemistry/namd/files/namd-2.7-gentoo.patch +++ /dev/null @@ -1,117 +0,0 @@ -diff -aurN NAMD_2.7b1_Source.orig/Make.charm NAMD_2.7b1_Source/Make.charm ---- NAMD_2.7b1_Source.orig/Make.charm 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/Make.charm 2009-06-07 15:15:11.000000000 -0500 -@@ -2,5 +2,5 @@ - # The config script will override this setting if there is a directory - # called charm-6.1 or charm in the NAMD base directory. - --CHARMBASE = /Projects/namd2/charm-6.1 -+CHARMBASE = /usr/include/charm-6.1.2 - -diff -aurN NAMD_2.7b1_Source.orig/Makefile NAMD_2.7b1_Source/Makefile ---- NAMD_2.7b1_Source.orig/Makefile 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/Makefile 2009-06-07 15:15:11.000000000 -0500 -@@ -297,10 +297,10 @@ - $(DSTDIR)/stringhash.o - - # definitions for Charm routines --CHARMC = $(CHARM)/bin/charmc --CHARMXI = $(CHARM)/bin/charmc --CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1 --CHARMLIB = $(CHARM)/lib -+CHARMC = /usr/bin/charmc -+CHARMXI = /usr/bin/charmc -+CHARMINC = /usr/include/gentoo-charm $(COPTD)CMK_OPTIMIZE=1 -+CHARMLIB = /usr/gentoo-libdir - - # Libraries we may have changed - LIBS = $(CUDAOBJS) $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL) -@@ -320,7 +320,7 @@ - - # Add new executables here. - --BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb -+BINARIES = namd2 psfgen flipdcd flipbinpdb - - # This should be rebuilt at every compile, but not on Win32. - BUILDINFO = $(DSTDIR)/buildinfo -@@ -351,14 +351,6 @@ - $(CHARMOPTS) \ - -lm -o namd2 - --charmrun: $(CHARM)/bin/charmrun # XXX -- $(COPY) $(CHARM)/bin/charmrun $@ -- --WINDOWSBINARIES = namd2.exe psfgen.exe --# WINDOWSBINARIES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe -- --windowsbinaries: $(WINDOWSBINARIES) -- - namd2.exe: $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) $(TCLDLL) - $(MAKEBUILDINFO) - $(CHARMC) -verbose \ -@@ -381,9 +373,6 @@ - charmd_faceless.exe: - $(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe - --charmrun.exe: -- $(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe -- - psfgen: $(DSTDIR) $(SBOBJS) $(PLUGINOBJS) - $(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm - -@@ -700,9 +689,7 @@ - - DOC_FILES = README.txt announce.txt license.txt notes.txt - --RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2 -- --WINDOWS_RELEASE_FILES = $(WINDOWSBINARIES) $(TCLDLL) -+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2 - - release: all - $(ECHO) Creating release $(RELEASE_DIR_NAME) -@@ -711,17 +698,9 @@ - for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done - cp -r .rootdir/lib $(RELEASE_DIR_NAME) - /bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS -- if [ -r $(CHARM)/bin/charmd ]; then \ -- $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \ -- fi -- if [ -r $(CHARM)/bin/charmd_faceless ]; then \ -- $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \ -- fi - chmod -R a+rX $(RELEASE_DIR_NAME) - tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME) - gzip $(RELEASE_DIR_NAME).tar -- echo $(CHARM) -- ls -l $(CHARM)/lib - -for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done - - winrelease: winall -diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw NAMD_2.7b1_Source/arch/Linux-x86_64.fftw ---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/arch/Linux-x86_64.fftw 2009-06-07 15:15:11.000000000 -0500 -@@ -1,7 +1,7 @@ - --FFTDIR=/Projects/namd2/fftw/linux-x86_64 -+FFTDIR=/usr - FFTINCL=-I$(FFTDIR)/include --FFTLIB=-L$(FFTDIR)/lib -lsrfftw -lsfftw -+FFTLIB=-L$(FFTDIR)/gentoo-libdir -lsrfftw -lsfftw - FFTFLAGS=-DNAMD_FFTW - FFT=$(FFTINCL) $(FFTFLAGS) - -diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl NAMD_2.7b1_Source/arch/Linux-x86_64.tcl ---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl 2009-06-07 15:15:11.000000000 -0500 -+++ NAMD_2.7b1_Source/arch/Linux-x86_64.tcl 2009-06-07 18:25:07.000000000 -0500 -@@ -1,7 +1,7 @@ - --TCLDIR=/Projects/namd2/tcl/linux-x86_64 -+TCLDIR=/usr - TCLINCL=-I$(TCLDIR)/include --TCLLIB=-L$(TCLDIR)/lib -ltcl8.3 -ldl -+TCLLIB=-L$(TCLDIR)/gentoo-libdir -ltcl8.5 -ldl - TCLFLAGS=-DNAMD_TCL - TCL=$(TCLINCL) $(TCLFLAGS) - |