From 3497250df845768c516359d990e726ef85b8e1c4 Mon Sep 17 00:00:00 2001 From: Jeffrey Gardner Date: Sun, 29 Jun 2008 00:07:12 +0000 Subject: import for testing svn path=/; revision=233 --- sci-biology/meme/Manifest | 8 +- .../meme/files/meme-3.5.4-Makefile.am.patch | 17 -- sci-biology/meme/files/meme-3.5.4-patch1.patch | 198 --------------------- sci-biology/meme/files/meme-3.5.4-patch2.patch | 70 -------- .../meme/files/meme-3.5.7-Makefile.am.patch | 17 ++ sci-biology/meme/meme-3.5.4-r1.ebuild | 90 ---------- sci-biology/meme/meme-3.5.7.ebuild | 89 +++++++++ 7 files changed, 109 insertions(+), 380 deletions(-) delete mode 100644 sci-biology/meme/files/meme-3.5.4-Makefile.am.patch delete mode 100644 sci-biology/meme/files/meme-3.5.4-patch1.patch delete mode 100644 sci-biology/meme/files/meme-3.5.4-patch2.patch create mode 100644 sci-biology/meme/files/meme-3.5.7-Makefile.am.patch delete mode 100644 sci-biology/meme/meme-3.5.4-r1.ebuild create mode 100644 sci-biology/meme/meme-3.5.7.ebuild (limited to 'sci-biology') diff --git a/sci-biology/meme/Manifest b/sci-biology/meme/Manifest index 4a83c46..2a82c34 100644 --- a/sci-biology/meme/Manifest +++ b/sci-biology/meme/Manifest @@ -1,7 +1,5 @@ -AUX meme-3.5.4-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad SHA1 96530d5a58b8c01c99ae2b5463b7448758d7fb3d SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8 -AUX meme-3.5.4-patch1.patch 7443 RMD160 6d72e74d6139d8c29bfcda9da750dc454f08ef0a SHA1 336c91ad5ecd44d49de0e940bb18315b62569a2b SHA256 306cee9c3c831494cf264ded84d248e5773c9a56d259a02e8da9c6dc31457f04 -AUX meme-3.5.4-patch2.patch 2074 RMD160 56520122dd1d35afa444414ea57199924e8492b5 SHA1 29edf295100721006aea8b76ff4c5bdfb9312020 SHA256 bf74f09bcd6c247f464f15b17e3a0e8f95149fdc5b92d8f17d06ede430d2d7be -DIST meme_3.5.4.tar.gz 1045501 RMD160 063a804c18f07349e95f4aba2a3c97cb025ed2a8 SHA1 d780dba0b900f840a599cf69cfeba4eefd4856b4 SHA256 b753ee276bc5eafeab8ff310e6d938977da11f466d26cfd3ae9c0f0a7a91de86 -EBUILD meme-3.5.4-r1.ebuild 2822 RMD160 2855f8b8c529002cb498639f51779294d0d4f41e SHA1 ea3e3b23dce7ce2b3bbca1ea3b393fb3da283e1e SHA256 c3370cf5ad110a7a3e4a5b0c53ed8823c4b9e151dcf79aa3a46f8a5a0e80b0c7 +AUX meme-3.5.7-Makefile.am.patch 377 RMD160 a8d4551bcb53b66044ded24421cd2a17bf93b3ad SHA1 96530d5a58b8c01c99ae2b5463b7448758d7fb3d SHA256 ef3f0d8ccca728325d9f9b4f485e8cd4db2ced50fc975f8b66f3b76fcf17b5e8 +DIST meme_3.5.7.tar.gz 1101383 RMD160 ab2c38873d30490933151520b09bec0644d2c492 SHA1 f04f233be63a75a78ea878d025a0476099e496cd SHA256 b5d84d969f69dbe02f2636e2161c53212f7c9a5b141ae2ed759f99a322f221a9 +EBUILD meme-3.5.7.ebuild 2687 RMD160 43e134a5db21694768145a23c6bbbe21a5d76cd9 SHA1 2fd3e83ee2770ceb0120da0c5ee40edd32f7616c SHA256 7ae8871a9845c34855b5754eb90dc5af00a87ec057e87708ba5e339a084641e0 MISC ChangeLog 566 RMD160 74f3916e717ce84e593217bd53c0b99eb10a14c9 SHA1 799df7e3146993c26d897dd8224f302fd0970fcc SHA256 909bde96179b1488d0bcd854d9cd2d3a37a6e55c6c9756623fae0e77e8562dff MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 diff --git a/sci-biology/meme/files/meme-3.5.4-Makefile.am.patch b/sci-biology/meme/files/meme-3.5.4-Makefile.am.patch deleted file mode 100644 index 1293de0..0000000 --- a/sci-biology/meme/files/meme-3.5.4-Makefile.am.patch +++ /dev/null @@ -1,17 +0,0 @@ ---- Makefile.am.old 2007-04-24 10:36:50.000000000 -0400 -+++ Makefile.am 2007-04-24 10:37:37.000000000 -0400 -@@ -57,11 +57,11 @@ - endif - - dbdir: -- mkdir -p $(MEME_DB) -+ mkdir -p $(DESTDIR)$(MEME_DB) - - install-data-local: -- mkdir -p $(MEME_LOGS) -- chmod a+w $(MEME_LOGS) -+ mkdir -p $(DESTDIR)$(MEME_LOGS) -+ chmod a+w $(DESTDIR)$(MEME_LOGS) - - distdir = $(PACKAGE)_$(VERSION) - diff --git a/sci-biology/meme/files/meme-3.5.4-patch1.patch b/sci-biology/meme/files/meme-3.5.4-patch1.patch deleted file mode 100644 index b072d7e..0000000 --- a/sci-biology/meme/files/meme-3.5.4-patch1.patch +++ /dev/null @@ -1,198 +0,0 @@ ---- meme_3.5.4/website/cgi-bin/process_request.pl 2006-09-21 19:46:29.000000000 +0000 -+++ trunk/website/cgi-bin/process_request.pl 2007-05-30 01:35:02.000000000 +0000 -@@ -1,6 +1,6 @@ - #!@WHICHPERL@ - ## --## $Id: process_request.pl 1339 2006-09-21 19:46:28Z tbailey $ -+## $Id: process_request.pl 1807 2007-05-30 01:34:31Z tbailey $ - ## - ## $Log: process_request.pl,v $ - ## Revision 1.6.6.1 2006/02/16 23:22:35 nadya -@@ -55,7 +55,8 @@ - $blocks_url = "http://blocks.fhcrc.org/blocks-bin/process_blocks.pl"; - # - # You can change this if you wish to use a different JASPAR server --$jaspar_root = "http://mordor.cgb.ki.se"; -+#$jaspar_root = "http://mordor.cgb.ki.se"; -+$jaspar_root = "http://asp.ii.uib.no:8090"; - $jaspar_url = "$jaspar_root/cgi-bin/jaspar2005/jaspar_db.pl"; - # - # You can change this if you wish to use a different Meta-MEME server -@@ -221,7 +222,7 @@ - - $fasta = ""; # return value - @lines = split(/\n/, $block); # split block into lines -- for ($i = 1; $i<$#lines; $i++) { -+ for ($i = 2; $i<$#lines; $i++) { - last if $lines[$i] =~ /^\/\//; - @words = split(/\s+/, $lines[$i]); # split line into words - # get sequence line -@@ -239,7 +240,7 @@ - - $fasta = ""; # return value - @lines = split(/\n/, $block); # split block into lines -- for ($i = 1; $i<$#lines; $i++) { -+ for ($i = 2; $i<$#lines; $i++) { - last if $lines[$i] =~ /^\/\//; - @words = split(/\s+/, $lines[$i]); # split line into words - # get id line and sequence line -@@ -311,7 +312,8 @@ - $content = $request->content; - - # fix bug in JASPAR output; add database field to view buttons -- $content =~ s/rm=present/rm=present&db=$sub_db/g; -+ # remove fix: JASPAR fixed the bug -+ # $content =~ s/rm=present/rm=present&db=$sub_db/g; - - # display the page - print $content; ---- meme_3.5.4/src/ureadseq.c 2006-09-21 19:46:28.000000000 +0000 -+++ trunk/src/ureadseq.c 2007-05-18 08:18:05.000000000 +0000 -@@ -1,5 +1,5 @@ - /* -- * $Id: ureadseq.c 1339 2006-09-21 19:46:28Z tbailey $ -+ * $Id: ureadseq.c 1787 2007-05-18 08:17:28Z tbailey $ - * - * $Log$ - * Revision 1.2 2006/03/08 20:50:11 nadya -@@ -206,10 +206,9 @@ - - Local void addinfo(char *s, struct ReadSeqVars *V) - { -- char s2[256], *si; -+ char *si = (char *) malloc((strlen(s) + 40) * sizeof(char)); - boolean saveadd; - -- si = s2; - while (*s == ' ') s++; - sprintf(si, " %d) %s\n", V->nseq, s); - -@@ -217,6 +216,7 @@ - V->addit = true; - V->isseqchar = isAnyChar; - addseq( si, V); -+ free(si); - V->addit = saveadd; - V->isseqchar = isSeqChar; - } -@@ -966,7 +966,6 @@ - } while ((l == 0) && !feof(V->f)); - - if (feof(V->f)) V->err = eNoData; -- - else switch (format_) { - case kPlain : readPlain(V); break; - case kIG : readIG(V); break; -@@ -1181,7 +1180,7 @@ - int nlines= 0, k=0, splen= 0, otherlines= 0, aminolines= 0, dnalines= 0; - char sp[MAXLINE]; - long linestart=0; -- int maxlines2check=500; -+ int maxlines2check=5000; - - #define ReadOneLine(sp) \ - { done |= (feof(fseq)); \ ---- meme_3.5.4/src/include/ureadseq.h 2006-09-21 19:46:28.000000000 +0000 -+++ trunk/src/ureadseq.h 2007-05-18 08:18:05.000000000 +0000 -@@ -1,5 +1,5 @@ - /* -- * $Id: ureadseq.h 1339 2006-09-21 19:46:28Z tbailey $ -+ * $Id: ureadseq.h 1048 2006-07-06 20:07:44Z cegrant $ - * - * $Log$ - * Revision 1.1 2005/07/29 19:12:07 nadya -@@ -15,7 +15,7 @@ - #include "config.h" - #include "macros.h" - --#define MAXLINE 1024 -+#define MAXLINE 10240 - - typedef char boolean; - #define NEWLINE '\n' ---- meme_3.5.4/src/read_seq_file.c 2006-09-21 19:46:28.000000000 +0000 -+++ ./read_seq_file.c 2007-05-18 06:51:06.000000000 +0000 -@@ -433,6 +433,7 @@ - name[i++] = c; /* non-blank: add to name */ - } - } -+ Resize(name, i+1, char); - name[i] = '\0'; - - /* read in description */ ---- meme_3.5.4/website/html/meme-install.html 2006-09-21 19:46:29.000000000 +0000 -+++ fred/meme-install.html 2007-05-30 02:00:56.000000000 +0000 -@@ -208,42 +208,39 @@ -

Getting and installing the patches

-

The distribution may have patches associated with it. They are available - from http://meme.nbcr.net/downloads/. --The patch file name is filename.VERSION.patch. In addition, a --patched file is distributed as well and can be used as a drop-in substitute --for the original file. The drop-in file is filename.VERSION. --It is necessary to download only one of the two files depending on the method used for --patching. All patches for a specific version should be installed. The list --below provides instructions for installation of availble patches for specific --version. -+Patch files are located in a directory named -+VERSION.patches, -+for example, meme_3.5.4.patches. -+Patch file have names like: -+VERSION.patch_SERIAL_NO, for example, meme_3.5.4.patch_3. -+

To install a patch, download the patch file from the URL given above. -+Then perform the following commands to install it: -+
$ cp PATCH_FILE VERSION
$ cd VERSION -+
$ patch -p1 < PATCH_FILE -+
$ make install -+
$ make test -+

-+

-+For example, to install the first patch to version meme_3.5.4, you would perform the following commands: -+
$ cp meme_3.5.4.patch_1 meme_3.5.4 -+
$ cd meme_3.5.4 -+
$ patch -p1 < meme_3.5.4.patch_1 -+
$ make install -+
$ make test -+

-+

-+You must install all of the patches for a specific version in serial -+number order. For example, if you wish to install patch number 3, -+you must first have installed patches number 1 and 2 for that version. -+This is easy to do. Just download all the patches for your current -+version, copy them to your current versions's directory, and then -+install them in order by repeating the patch, -+command above, with each patch file. You only need to run the -+install and -+make test commands once, after -+the last patch command. -

- --
-- -- -- -- -- -- -- -- -- -- -- --
VersionPatch listInstallation
3.5.0mast-client.txt --
    --
  1. If downloaded a patch file mast-client.txt.3.5.0.patch: --
    # cp mast-client.txt.3.5.0 meme_3.5.0/scripts/ --
    # cd meme_3.5.0/scripts/ --
    # patch -p0 < mast-client.txt.3.5.0.patch --
    --
    2. --
  2. If downloaded a patched file mast-client.txt.3.5.0: --
    # cp mast-client.txt.3.5.0 meme_3.5.0/scripts/mast-client.txt --
    3. --
--
--
-- -

-

[ Top ]

- diff --git a/sci-biology/meme/files/meme-3.5.4-patch2.patch b/sci-biology/meme/files/meme-3.5.4-patch2.patch deleted file mode 100644 index cc07a98..0000000 --- a/sci-biology/meme/files/meme-3.5.4-patch2.patch +++ /dev/null @@ -1,70 +0,0 @@ ---- meme_3.5.4/website/cgi-bin/meme.pl 2006-09-21 19:46:29.000000000 +0000 -+++ trunk/website/cgi-bin/meme.pl 2007-09-10 00:28:33.000000000 +0000 -@@ -1,6 +1,6 @@ - #!@WHICHPERL@ - ## --## $Id: meme.pl 1339 2006-09-21 19:46:28Z tbailey $ -+## $Id: meme.pl 2054 2007-09-10 00:27:42Z tbailey $ - ## - ## $Log$ - ## Revision 1.12 2006/03/07 23:30:19 nadya -@@ -467,21 +467,21 @@ - - # check against allowed dna letters - $x = $_; -- $x =~ tr/ABCDGHKMNRSTUVWY//cd; -+ $x =~ tr/ABCDGHKMNRSTUVWY*-//cd; - $new = length $x; - if ($old == $new) { - "dna"; - } else { - # check against allowed protein letters - $x = $_; -- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//cd; -+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//cd; - $new = length $x; - if ($old == $new) { - "protein"; - } else { - # get the unknown letters - $x = $_; -- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//d; -+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//d; - &whine(" - Your sequences contained the following unrecognized letters: $x. -
---- meme_3.5.4/website/cgi-bin/mast.pl 2006-09-21 19:46:29.000000000 +0000 -+++ trunk/website/cgi-bin/mast.pl 2007-09-10 00:38:14.000000000 +0000 -@@ -1,6 +1,6 @@ - #!@WHICHPERL@ - ## --## $Id: mast.pl 1339 2006-09-21 19:46:28Z tbailey $ -+## $Id: mast.pl 2055 2007-09-10 00:37:11Z tbailey $ - ## - ## $Log$ - ## Revision 1.8 2006/03/07 23:30:19 nadya -@@ -479,21 +479,21 @@ - - # check against allowed nucleotide letters - $x = $_; -- $x =~ tr/ABCDGHKMNRSTUVWY//cd; -+ $x =~ tr/ABCDGHKMNRSTUVWY*-//cd; - $new = length $x; - if ($old == $new) { - return("DNA"); - } else { - # check against allowed protein letters - $x = $_; -- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//cd; -+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//cd; - $new = length $x; - if ($old == $new) { - return("PROTEIN"); - } else { - # get the unknown letters - $x = $_; -- $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ//d; -+ $x =~ tr/ABCDEFGHIKLMNPQRSTUVWXYZ*-//d; - &whine(" - Your sequences contained the following unrecognized letters: $x. -
diff --git a/sci-biology/meme/files/meme-3.5.7-Makefile.am.patch b/sci-biology/meme/files/meme-3.5.7-Makefile.am.patch new file mode 100644 index 0000000..1293de0 --- /dev/null +++ b/sci-biology/meme/files/meme-3.5.7-Makefile.am.patch @@ -0,0 +1,17 @@ +--- Makefile.am.old 2007-04-24 10:36:50.000000000 -0400 ++++ Makefile.am 2007-04-24 10:37:37.000000000 -0400 +@@ -57,11 +57,11 @@ + endif + + dbdir: +- mkdir -p $(MEME_DB) ++ mkdir -p $(DESTDIR)$(MEME_DB) + + install-data-local: +- mkdir -p $(MEME_LOGS) +- chmod a+w $(MEME_LOGS) ++ mkdir -p $(DESTDIR)$(MEME_LOGS) ++ chmod a+w $(DESTDIR)$(MEME_LOGS) + + distdir = $(PACKAGE)_$(VERSION) + diff --git a/sci-biology/meme/meme-3.5.4-r1.ebuild b/sci-biology/meme/meme-3.5.4-r1.ebuild deleted file mode 100644 index f2e9e8d..0000000 --- a/sci-biology/meme/meme-3.5.4-r1.ebuild +++ /dev/null @@ -1,90 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.4-r1.ebuild,v 1.4 2008/06/14 12:34:50 markusle Exp $ - -inherit autotools eutils toolchain-funcs - -DESCRIPTION="The MEME/MAST system - Motif discovery and search" -HOMEPAGE="http://meme.sdsc.edu/meme" -SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" -LICENSE="meme" - -SLOT="0" -KEYWORDS="~x86 ~amd64" -# Other possible USE flags include "debug", "client", "server", "web", -# "queue". Other variables must be set at compile time, but only when -# the Web server is built. Right now, Web server and client are disabled. -IUSE="mpi" - -# Works only with LAM-MPI. -DEPEND=">=dev-lang/perl-5.6.1 - mpi? ( virtual/mpi )" - -S="${WORKDIR}/${PN}_${PV}" - -src_unpack() { - unpack ${A} - - cd "${S}" - epatch "${FILESDIR}/${P}-Makefile.am.patch" - epatch "${FILESDIR}/${P}-patch1.patch" - epatch "${FILESDIR}/${P}-patch2.patch" - einfo "Regenerating autotools files..." - eautoreconf -} - -src_compile() { - local EXTRA_CONF - # Build system is too bugy to make the programs use standard locations. - # Put everything in "/opt" instead. - EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}" - EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}" - # Connect hyperlinks to official Web site. - EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme" - # Disable Web server, client and Web site. - EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web" - # Parallel implementation - if ! use mpi; then - EXTRA_CONF="${EXTRA_CONF} --enable-serial" - fi - - ./configure ${EXTRA_CONF} || die "Configure failed." - CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" make -e || die "Make failed." - -# Install parallel files only on x86, otherwise the install fails with the error: -# i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output - if [[ "${ARCH}" == "x86" ]] ; then - if use mpi; then - cd src/parallel - make || die "Parallel make failed." - fi - fi -} - -src_install() { - make install DESTDIR="${D}" || die "Failed to install program files." - exeinto "/opt/${PN}/bin" - if [[ "${ARCH}" == "x86" ]] ; then - if use mpi; then - doexe "${S}/src/parallel/${PN}_p" || \ - die "Failed to install parallel MEME implementation." - fi - fi - keepdir "/var/log/${PN}" - fperms 777 "/var/log/${PN}" -} - -pkg_postinst() { - echo - einfo 'Prior to using MEME/MAST, you should source "/opt/meme/etc/meme.sh"' - einfo '(or "/opt/meme/etc/meme.csh" if you use a csh-style shell). To do' - einfo 'this automatically with bash, add the following statement to your' - einfo '"~/.bashrc" file (without the quotes): "source /opt/meme/etc/meme.sh".' - echo - einfo 'Log files are produced in the "/var/log/meme" directory.' - echo -} - -src_test() { - make test || die "Regression tests failed." -} diff --git a/sci-biology/meme/meme-3.5.7.ebuild b/sci-biology/meme/meme-3.5.7.ebuild new file mode 100644 index 0000000..a51a6aa --- /dev/null +++ b/sci-biology/meme/meme-3.5.7.ebuild @@ -0,0 +1,89 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $ + +inherit autotools eutils toolchain-funcs + +DESCRIPTION="The MEME/MAST system - Motif discovery and search" +HOMEPAGE="http://meme.sdsc.edu/meme" +SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" +LICENSE="meme" + +SLOT="0" +KEYWORDS="~x86 ~amd64" +# Other possible USE flags include "debug", "client", "server", "web", +# "queue". Other variables must be set at compile time, but only when +# the Web server is built. Right now, Web server and client are disabled. +IUSE="mpi" + +DEPEND=">=dev-lang/perl-5.6.1 + mpi? ( virtual/mpi )" + +S="${WORKDIR}/${PN}_${PV}" + +src_unpack() { + unpack ${A} + + cd "${S}" + epatch "${FILESDIR}/${P}-Makefile.am.patch" +# epatch "${FILESDIR}/${P}-patch1.patch" +# epatch "${FILESDIR}/${P}-patch2.patch" + einfo "Regenerating autotools files..." + eautoreconf +} + +src_compile() { + local EXTRA_CONF + # Build system is too bugy to make the programs use standard locations. + # Put everything in "/opt" instead. + EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}" + EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}" + # Connect hyperlinks to official Web site. + EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme" + # Disable Web server, client and Web site. + EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web" + # Parallel implementation + if ! use mpi; then + EXTRA_CONF="${EXTRA_CONF} --enable-serial" + fi + + ./configure ${EXTRA_CONF} || die "Configure failed." + CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" make -e || die "Make failed." + +# Install parallel files only on x86, otherwise the install fails with the error: +# i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output + if [[ "${ARCH}" == "x86" ]] ; then + if use mpi; then + cd src/parallel + make || die "Parallel make failed." + fi + fi +} + +src_install() { + make install DESTDIR="${D}" || die "Failed to install program files." + exeinto "/opt/${PN}/bin" + if [[ "${ARCH}" == "x86" ]] ; then + if use mpi; then + doexe "${S}/src/parallel/${PN}_p" || \ + die "Failed to install parallel MEME implementation." + fi + fi + keepdir "/var/log/${PN}" + fperms 777 "/var/log/${PN}" +} + +pkg_postinst() { + echo + einfo 'Prior to using MEME/MAST, you should source "/opt/meme/etc/meme.sh"' + einfo '(or "/opt/meme/etc/meme.csh" if you use a csh-style shell). To do' + einfo 'this automatically with bash, add the following statement to your' + einfo '"~/.bashrc" file (without the quotes): "source /opt/meme/etc/meme.sh".' + echo + einfo 'Log files are produced in the "/var/log/meme" directory.' + echo +} + +src_test() { + make test || die "Regression tests failed." +} -- cgit v1.2.3-65-gdbad