# Copyright 1999-2007 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.4-r1.ebuild,v 1.1 2007/09/17 02:41:56 je_fro Exp $ inherit eutils toolchain-funcs DESCRIPTION="The MEME/MAST system - Motif discovery and search" HOMEPAGE="http://meme.sdsc.edu/meme" SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz" LICENSE="meme" SLOT="0" KEYWORDS="~x86 ~amd64" # Other possible USE flags include "debug", "client", "server", "web", # "queue". Other variables must be set at compile time, but only when # the Web server is built. Right now, Web server and client are disabled. IUSE="mpi" # Works only with LAM-MPI. DEPEND=">=dev-lang/perl-5.6.1 mpi? ( sys-cluster/lam-mpi )" S="${WORKDIR}/${PN}_${PV}" src_unpack() { unpack ${A} cd "${S}" epatch "${FILESDIR}/${P}-Makefile.am.patch" epatch "${FILESDIR}/${P}-patch1.patch" epatch "${FILESDIR}/${P}-patch2.patch" eautoreconf } src_compile() { local EXTRA_CONF # Build system is too bugy to make the programs use standard locations. # Put everything in "/opt" instead. EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}" EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}" # Connect hyperlinks to official Web site. EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme" # Disable Web server, client and Web site. EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web" # Parallel implementation if ! use mpi; then EXTRA_CONF="${EXTRA_CONF} --enable-serial" fi ./configure ${EXTRA_CONF} || die "Configure failed." CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}" make -e || die "Make failed." # Install parallel files only on x86, otherwise the install fails with the error: # i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output if [[ "${ARCH}" == "x86" ]] ; then if use mpi; then cd src/parallel make || die "Parallel make failed." fi fi } src_install() { make install DESTDIR="${D}" || die "Failed to install program files." exeinto "/opt/${PN}/bin" if [[ "${ARCH}" == "x86" ]] ; then if use mpi; then doexe "${S}/src/parallel/${PN}_p" || \ die "Failed to install parallel MEME implementation." fi fi keepdir "/var/log/${PN}" fperms 777 "/var/log/${PN}" } pkg_postinst() { echo einfo 'Prior to using MEME/MAST, you should source "/opt/meme/etc/meme.sh"' einfo '(or "/opt/meme/etc/meme.csh" if you use a csh-style shell). To do' einfo 'this automatically with bash, add the following statement to your' einfo '"~/.bashrc" file (without the quotes): "source /opt/meme/etc/meme.sh".' echo einfo 'Log files are produced in the "/var/log/meme" directory.' echo } src_test() { make test || die "Regression tests failed." }