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-rw-r--r--sys-cluster/gentoo-mpi/Manifest0
-rw-r--r--sys-cluster/gentoo-mpi/metadata.xml7
-rw-r--r--sys-cluster/mpich/mpich-3.2.ebuild114
-rw-r--r--sys-cluster/openmpi/openmpi-2.1.1.ebuild178
4 files changed, 292 insertions, 7 deletions
diff --git a/sys-cluster/gentoo-mpi/Manifest b/sys-cluster/gentoo-mpi/Manifest
deleted file mode 100644
index e69de29..0000000
--- a/sys-cluster/gentoo-mpi/Manifest
+++ /dev/null
diff --git a/sys-cluster/gentoo-mpi/metadata.xml b/sys-cluster/gentoo-mpi/metadata.xml
deleted file mode 100644
index e822bc8..0000000
--- a/sys-cluster/gentoo-mpi/metadata.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <longdescription lang="en">
- Gentoo MPI Overlay.
- </longdescription>
-</pkgmetadata>
diff --git a/sys-cluster/mpich/mpich-3.2.ebuild b/sys-cluster/mpich/mpich-3.2.ebuild
new file mode 100644
index 0000000..6f2574d
--- /dev/null
+++ b/sys-cluster/mpich/mpich-3.2.ebuild
@@ -0,0 +1,114 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+FORTRAN_NEEDED=fortran
+
+inherit fortran-2 mpi-providers
+
+MY_PV=${PV/_/}
+DESCRIPTION="A high performance and portable MPI implementation"
+HOMEPAGE="http://www.mpich.org/"
+SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz"
+
+LICENSE="mpich"
+KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+cxx doc fortran mpi-threads romio threads"
+
+COMMON_DEPEND="
+ dev-libs/libaio
+ >=sys-apps/hwloc-1.9
+ romio? ( net-fs/nfs-utils )"
+
+DEPEND="${COMMON_DEPEND}
+ dev-lang/perl
+ sys-devel/libtool"
+
+RDEPEND="${COMMON_DEPEND}
+ !sys-cluster/mpich2
+ !sys-cluster/openmpi"
+
+S="${WORKDIR}"/${PN}-${MY_PV}
+
+pkg_setup() {
+ FORTRAN_STANDARD="77 90"
+ fortran-2_pkg_setup
+
+ if use mpi-threads && ! use threads; then
+ ewarn "mpi-threads requires threads, assuming that's what you want"
+ fi
+}
+
+src_prepare() {
+ # Using MPICHLIB_LDFLAGS doesn't seem to fully work.
+ sed -i 's| *@WRAPPER_LDFLAGS@ *||' \
+ src/packaging/pkgconfig/mpich.pc.in \
+ src/env/*.in \
+ || die
+}
+
+src_configure() {
+ local c="--enable-shared"
+ local hydra_c="--with-hwloc-prefix=/usr"
+
+ # The configure statements can be somewhat confusing, as they
+ # don't all show up in the top level configure, however, they
+ # are picked up in the children directories. Hence the separate
+ # local vars.
+
+ if use mpi-threads; then
+ # MPI-THREAD requries threading.
+ c="${c} --with-thread-package=pthreads"
+ c="${c} --enable-threads=runtime"
+ else
+ if use threads ; then
+ c="${c} --with-thread-package=pthreads"
+ else
+ c="${c} --with-thread-package=none"
+ fi
+ c="${c} --enable-threads=single"
+ fi
+
+ c="${c} --sysconfdir=${EPREFIX}/etc/${PN}"
+ c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}"
+
+ export MPICHLIB_CFLAGS=${CFLAGS}
+ export MPICHLIB_CPPFLAGS=${CPPFLAGS}
+ export MPICHLIB_CXXFLAGS=${CXXFLAGS}
+ export MPICHLIB_FFLAGS=${FFLAGS}
+ export MPICHLIB_FCFLAGS=${FCFLAGS}
+ export MPICHLIB_LDFLAGS=${LDFLAGS}
+ unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS
+
+ econf ${c} \
+ --sysconfdir="$(mpi-providers_sysconfdir)" \
+ --with-pm=hydra \
+ --disable-fast \
+ --enable-versioning \
+ ${hydra_c}
+ $(use_enable romio) \
+ $(use_enable cxx) \
+ $(use_enable fortran f77) \
+ $(use_enable fortran fc)
+}
+
+src_test() {
+ emake -j1 check
+}
+
+src_install() {
+ default
+
+ dodir /usr/share/doc/${PF}
+ dodoc README{,.envvar} CHANGES RELEASE_NOTES
+ newdoc src/pm/hydra/README README.hydra
+ if use romio; then
+ newdoc src/mpi/romio/README README.romio
+ fi
+
+ if ! use doc; then
+ rm -rf "${D}"usr/share/doc/${PF}/www*
+ fi
+ mpi-providers_safe_mv
+}
diff --git a/sys-cluster/openmpi/openmpi-2.1.1.ebuild b/sys-cluster/openmpi/openmpi-2.1.1.ebuild
new file mode 100644
index 0000000..a291cd2
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-2.1.1.ebuild
@@ -0,0 +1,178 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi-providers
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+ openmpi_fabrics_ofed
+ openmpi_fabrics_knem
+ openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+ openmpi_rm_pbs
+ openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+ openmpi_ofed_features_control-hdr-padding
+ openmpi_ofed_features_connectx-xrc
+ openmpi_ofed_features_udcm
+ openmpi_ofed_features_rdmacm
+ openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux"
+IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads
+ ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+ openmpi_rm_pbs? ( !openmpi_rm_slurm )
+ openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+# dev-util/nvidia-cuda-toolkit is always multilib
+CDEPEND="
+ !sys-cluster/mpich
+ !sys-cluster/mpich2
+ !sys-cluster/nullmpi
+ !sys-cluster/mpiexec
+ >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads]
+ dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+ >=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?]
+ >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+ cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 )
+ elibc_FreeBSD? ( dev-libs/libexecinfo )
+ openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+ openmpi_fabrics_knem? ( sys-cluster/knem )
+ openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+ openmpi_rm_pbs? ( sys-cluster/torque )
+ openmpi_rm_slurm? ( sys-cluster/slurm )
+ openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+ java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+ java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+ /usr/include/mpi.h
+ /usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+ fortran-2_pkg_setup
+ java-pkg-opt-2_pkg_setup
+
+ elog
+ elog "OpenMPI has an overwhelming count of configuration options."
+ elog "Don't forget the EXTRA_ECONF environment variable can let you"
+ elog "specify configure options if you find them necessary."
+ elog
+}
+
+src_prepare() {
+ default
+
+ # Necessary for scalibility, see
+ # http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+ if use threads; then
+ echo 'oob_tcp_listen_mode = listen_thread' \
+ >> opal/etc/openmpi-mca-params.conf || die
+ fi
+}
+
+multilib_src_configure() {
+ if use java; then
+ # We must always build with the right -source and -target
+ # flags. Passing flags to javac isn't explicitly supported here
+ # but we can cheat by overriding the configure test for javac.
+ export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+ fi
+
+ ECONF_SOURCE=${S} econf \
+ --sysconfdir="${EPREFIX}/etc/${PN}" \
+ --enable-pretty-print-stacktrace \
+ --enable-orterun-prefix-by-default \
+ --with-hwloc="${EPREFIX}/usr" \
+ --with-libltdl="${EPREFIX}/usr" \
+ --with-libevent="${EPREFIX}/usr" \
+ --enable-mpi-fortran=$(usex fortran all no) \
+ $(use_enable cxx mpi-cxx) \
+ $(use_with cma) \
+ $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+ $(use_enable romio io-romio) \
+ $(use_enable heterogeneous) \
+ $(use_enable ipv6) \
+ $(multilib_native_use_enable java) \
+ $(multilib_native_use_enable java mpi-java) \
+ $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \
+ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+ $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+ $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \
+ $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+ $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+ $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+ $(multilib_native_use_with openmpi_rm_pbs tm) \
+ $(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+ # Doesn't work with the default src_test as the dry run (-n) fails.
+ emake -j1 check
+}
+
+multilib_src_install() {
+ default
+
+ # fortran header cannot be wrapped (bug #540508), workaround part 1
+ if multilib_is_native_abi && use fortran; then
+ mkdir "${T}"/fortran || die
+ mv "${ED}"usr/include/mpif* "${T}"/fortran || die
+ else
+ # some fortran files get installed unconditionally
+ rm \
+ "${ED}"usr/include/mpif* \
+ "${ED}"usr/bin/mpif* \
+ "${ED}"usr/bin/oshfort \
+ "${ED}"usr/bin/shmemfort \
+ || die
+ fi
+}
+
+multilib_src_install_all() {
+ # fortran header cannot be wrapped (bug #540508), workaround part 2
+ if use fortran; then
+ mv "${T}"/fortran/mpif* "${ED}"usr/include || die
+ fi
+
+ # Remove la files, no static libs are installed and we have pkg-config
+ find "${ED}" -name '*.la' -delete || die
+
+ if use java; then
+ local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar
+ java-pkg_dojar "${mpi_jar}"
+ # We don't want to install the jar file twice
+ # so let's clean after ourselves.
+ rm "${mpi_jar}" || die
+ fi
+
+ einstalldocs
+ mpi-providers_safe_mv || die
+}