From 2be984d2ec64ff12f842fb564db4a0df2652c7e7 Mon Sep 17 00:00:00 2001 From: Michael Gilroy Date: Thu, 15 Jun 2017 18:13:13 +0000 Subject: repository reorganization --- sys-cluster/gentoo-mpi/Manifest | 0 sys-cluster/gentoo-mpi/metadata.xml | 7 -- sys-cluster/mpich/mpich-3.2.ebuild | 114 ++++++++++++++++++++ sys-cluster/openmpi/openmpi-2.1.1.ebuild | 178 +++++++++++++++++++++++++++++++ 4 files changed, 292 insertions(+), 7 deletions(-) delete mode 100644 sys-cluster/gentoo-mpi/Manifest delete mode 100644 sys-cluster/gentoo-mpi/metadata.xml create mode 100644 sys-cluster/mpich/mpich-3.2.ebuild create mode 100644 sys-cluster/openmpi/openmpi-2.1.1.ebuild (limited to 'sys-cluster') diff --git a/sys-cluster/gentoo-mpi/Manifest b/sys-cluster/gentoo-mpi/Manifest deleted file mode 100644 index e69de29..0000000 diff --git a/sys-cluster/gentoo-mpi/metadata.xml b/sys-cluster/gentoo-mpi/metadata.xml deleted file mode 100644 index e822bc8..0000000 --- a/sys-cluster/gentoo-mpi/metadata.xml +++ /dev/null @@ -1,7 +0,0 @@ - - - - - Gentoo MPI Overlay. - - diff --git a/sys-cluster/mpich/mpich-3.2.ebuild b/sys-cluster/mpich/mpich-3.2.ebuild new file mode 100644 index 0000000..6f2574d --- /dev/null +++ b/sys-cluster/mpich/mpich-3.2.ebuild @@ -0,0 +1,114 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit fortran-2 mpi-providers + +MY_PV=${PV/_/} +DESCRIPTION="A high performance and portable MPI implementation" +HOMEPAGE="http://www.mpich.org/" +SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" + +LICENSE="mpich" +KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+cxx doc fortran mpi-threads romio threads" + +COMMON_DEPEND=" + dev-libs/libaio + >=sys-apps/hwloc-1.9 + romio? ( net-fs/nfs-utils )" + +DEPEND="${COMMON_DEPEND} + dev-lang/perl + sys-devel/libtool" + +RDEPEND="${COMMON_DEPEND} + !sys-cluster/mpich2 + !sys-cluster/openmpi" + +S="${WORKDIR}"/${PN}-${MY_PV} + +pkg_setup() { + FORTRAN_STANDARD="77 90" + fortran-2_pkg_setup + + if use mpi-threads && ! use threads; then + ewarn "mpi-threads requires threads, assuming that's what you want" + fi +} + +src_prepare() { + # Using MPICHLIB_LDFLAGS doesn't seem to fully work. + sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ + src/packaging/pkgconfig/mpich.pc.in \ + src/env/*.in \ + || die +} + +src_configure() { + local c="--enable-shared" + local hydra_c="--with-hwloc-prefix=/usr" + + # The configure statements can be somewhat confusing, as they + # don't all show up in the top level configure, however, they + # are picked up in the children directories. Hence the separate + # local vars. + + if use mpi-threads; then + # MPI-THREAD requries threading. + c="${c} --with-thread-package=pthreads" + c="${c} --enable-threads=runtime" + else + if use threads ; then + c="${c} --with-thread-package=pthreads" + else + c="${c} --with-thread-package=none" + fi + c="${c} --enable-threads=single" + fi + + c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" + c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" + + export MPICHLIB_CFLAGS=${CFLAGS} + export MPICHLIB_CPPFLAGS=${CPPFLAGS} + export MPICHLIB_CXXFLAGS=${CXXFLAGS} + export MPICHLIB_FFLAGS=${FFLAGS} + export MPICHLIB_FCFLAGS=${FCFLAGS} + export MPICHLIB_LDFLAGS=${LDFLAGS} + unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS + + econf ${c} \ + --sysconfdir="$(mpi-providers_sysconfdir)" \ + --with-pm=hydra \ + --disable-fast \ + --enable-versioning \ + ${hydra_c} + $(use_enable romio) \ + $(use_enable cxx) \ + $(use_enable fortran f77) \ + $(use_enable fortran fc) +} + +src_test() { + emake -j1 check +} + +src_install() { + default + + dodir /usr/share/doc/${PF} + dodoc README{,.envvar} CHANGES RELEASE_NOTES + newdoc src/pm/hydra/README README.hydra + if use romio; then + newdoc src/mpi/romio/README README.romio + fi + + if ! use doc; then + rm -rf "${D}"usr/share/doc/${PF}/www* + fi + mpi-providers_safe_mv +} diff --git a/sys-cluster/openmpi/openmpi-2.1.1.ebuild b/sys-cluster/openmpi/openmpi-2.1.1.ebuild new file mode 100644 index 0000000..a291cd2 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-2.1.1.ebuild @@ -0,0 +1,178 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi-providers + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" + +# dev-util/nvidia-cuda-toolkit is always multilib +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/mpiexec + >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-1.11.2[${MULTILIB_USEDEP},numa?] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die + fi +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ECONF_SOURCE=${S} econf \ + --sysconfdir="${EPREFIX}/etc/${PN}" \ + --enable-pretty-print-stacktrace \ + --enable-orterun-prefix-by-default \ + --with-hwloc="${EPREFIX}/usr" \ + --with-libltdl="${EPREFIX}/usr" \ + --with-libevent="${EPREFIX}/usr" \ + --enable-mpi-fortran=$(usex fortran all no) \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(multilib_native_use_enable java) \ + $(multilib_native_use_enable java mpi-java) \ + $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(multilib_native_use_with openmpi_rm_pbs tm) \ + $(multilib_native_use_with openmpi_rm_slurm slurm) +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm \ + "${ED}"usr/include/mpif* \ + "${ED}"usr/bin/mpif* \ + "${ED}"usr/bin/oshfort \ + "${ED}"usr/bin/shmemfort \ + || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + einstalldocs + mpi-providers_safe_mv || die +} -- cgit v1.2.3