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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-26 14:52:38 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-02-26 14:52:38 +0100 |
| commit | 26242100ae861907ae58864ffac9163bf9be51ed (patch) | |
| tree | 940727b22e9652ec03820509faf085d880cf2d02 | |
| parent | Drop more ancient CVS Header (diff) | |
| download | sci-26242100ae861907ae58864ffac9163bf9be51ed.tar.gz sci-26242100ae861907ae58864ffac9163bf9be51ed.tar.bz2 sci-26242100ae861907ae58864ffac9163bf9be51ed.zip | |
sci-biology/flexbar: version bump
https://github.com/seqan/flexbar/issues/8
Package-Manager: Portage-2.3.3, Repoman-2.3.1
| -rw-r--r-- | sci-biology/flexbar/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/flexbar/flexbar-2.4.ebuild | 23 | ||||
| -rw-r--r-- | sci-biology/flexbar/flexbar-2.7.0.ebuild | 33 |
3 files changed, 34 insertions, 24 deletions
diff --git a/sci-biology/flexbar/Manifest b/sci-biology/flexbar/Manifest index 2114576cf..4493b8c57 100644 --- a/sci-biology/flexbar/Manifest +++ b/sci-biology/flexbar/Manifest @@ -1 +1 @@ -DIST flexbar_v2.4_src.tgz 30269 SHA256 241aeda8bb0a40ee583ec58e54a3872441ecd570fa2ada61f1e3435a790d1946 SHA512 c95b1f96d35d14cca43018916cc11df2376ccd13ab60e01c2cb0e9ee09b585d6d4305dd02b2afbf2c6875ac89c08a83f2efc520165549ada80c28d01d339adef WHIRLPOOL 5a2a58edb6d4800c369914ceaf2c1df6ec850167fcda90c2489dfede37147f6e855e5dcdfc7f4b35922bcd3c748f6b07b3d10a9f5a825370d84209ae518950c2 +DIST flexbar-2.7.0.tar.gz 30033 SHA256 8b44a16594e8a2f68d33acbcfdbfb0a017d2a6dc69cc65259b199ad94ea0f0e6 SHA512 38dc40476dadd769977dd2428941928e839e107e719e9b595c2ba57e1d8764fb394c5960b809da99dc939a66cae9350ea607e393b9467e98d464d0e49bcdac47 WHIRLPOOL da45d9bb8080ef7913324875dd0f8ac4a6f182337da1c217eaf9894ced407f78ff10637b62981466ad0cc2c4dde25d6d1d5235480112ebe67e7a21053b699247 diff --git a/sci-biology/flexbar/flexbar-2.4.ebuild b/sci-biology/flexbar/flexbar-2.4.ebuild deleted file mode 100644 index 515dabcfc..000000000 --- a/sci-biology/flexbar/flexbar-2.4.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils - -DESCRIPTION="Barcode, MID tag and adapter sequence removal" -HOMEPAGE="https://sourceforge.net/p/flexbar/wiki/Manual" -SRC_URI="http://sourceforge.net/projects/flexbar/files/2.4/flexbar_v2.4_src.tgz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -CDEPEND=" - dev-cpp/tbb - >=sci-biology/seqan-1.4.1:0" -DEPEND="${CDEPEND}" -RDEPEND="${CDEPEND}" - -S="${WORKDIR}"/"${PN}"_v"${PV}"_src diff --git a/sci-biology/flexbar/flexbar-2.7.0.ebuild b/sci-biology/flexbar/flexbar-2.7.0.ebuild new file mode 100644 index 000000000..5fbee3998 --- /dev/null +++ b/sci-biology/flexbar/flexbar-2.7.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Barcode, MID tag and adapter sequence removal" +HOMEPAGE="https://github.com/seqan/flexbar" +SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +CDEPEND=" + dev-cpp/tbb + >=sci-biology/seqan-2.1.1:0" +DEPEND="${CDEPEND}" +RDEPEND="${CDEPEND}" + +# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down +src_configure() { + local CPPFLAGS=${CPPFLAGS} + append-cppflags `pkg-config --cflags seqan-2.2` + local CXXFLAGS="${CXXFLAGS}" + append-cxxflags "-std=c++14" + cmake-utils_src_configure +} + +# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y +# https://github.com/seqan/flexbar/issues/8 |