Merge pull request #568 from hmmr/master

new upstream releases of sci-biology/{aghermann,cnrun}

7 files changed, 6 insertions, 98 deletions

diff --git a/sci-biology/aghermann/Manifest b/sci-biology/aghermann/Manifest
index 5d580eaca..5c3fa4cda 100644
--- a/sci-biology/aghermann/Manifest
+++ b/sci-biology/aghermann/Manifest
@@ -1,3 +1 @@
-DIST aghermann-1.0.3.tar.xz 499492 SHA256 fa4d0543665d8e4767ff61e436ffee7249b1767e72bd4ef83e7d2a0eb03b66c0 SHA512 61b84aebfd0f22f7f831508652c8994dcd3861b354fc29022c7717b995f901200d541c491b7fd9328ccc9af7dd71779a5d8a3fc18e75fa78fc48b9ff98d72ee0 WHIRLPOOL 0f99b9d521d15fa513df905359db3f627376c83988c7b7a7bd1ad1617591acb25aa74941dc4e754443f4f879852258d65323580a2e0ae2c79024fc80c692af83
-DIST aghermann-1.0.4.tar.xz 499872 SHA256 522a8c571c9e8aaecfb997f057a01298f804bff139c052d15b3347bdf2a58722 SHA512 ff891f71480ae25cce884bfea714c11eb0536cccfe4ade8c9b742d74db63dba6664e80d7f53272e95de1e04e1fdfb895ef278106a31a1d904e95cb062c4277c8 WHIRLPOOL fbfc6c3084b6d46f460b387cba521726b6fea4f4cacfd7907011507db66cc86700c7e36a1b6823d7a7fbd04d06986ec2e12654048544730765516265799af2f9
-DIST aghermann-1.0.5.tar.xz 500112 SHA256 a0c6ccd2e740f283559b92ee6fa7ff5c92699bae72cf10a7a7f6fb53e45a258e SHA512 3355664dfa59d81c110e5da4b883c09729fee440328b6c5b568f2b412d1ad3e09503832acfe4874a7b45f3330446bb2e3e144607e3af922c6ce2484162d6d4ab WHIRLPOOL ec8f5662345a9f67d59dfe7e80b8396eefcaba45e4be8ddd899e842ed35a617d92ea503d3380868f5e851a3b90d06018ecae6ad986bf015aee4f8aa14c89a211
+DIST aghermann-1.0.7.tar.xz 509336 SHA256 892b7cbb4a19554a772779e861a9f01b1bf753605722afb70a6ab362bebb2751 SHA512 bec591865a305ef3888c2f2986c3417139a853a9d5b95894c7b512fe48a220e40199a2c4ba84fa79c960e666e33b1f3371fbdc46c163d699a2041d0ba67eaebd WHIRLPOOL bcd02dcf06ac91f62b61014f6dace95d7721f0ba5e95e4080547e9c0a8b1a461fe3691da4360c8c33ab7b4ba04a35bcb6a0f006fcb4f9df5f918403ee5587627
diff --git a/sci-biology/aghermann/aghermann-1.0.3.ebuild b/sci-biology/aghermann/aghermann-1.0.3.ebuild
deleted file mode 100644
index b3663cf36..000000000
--- a/sci-biology/aghermann/aghermann-1.0.3.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-DESCRIPTION="A sleep-research experiment manager, EDF viewer & Achermann's Process S model runner"
-HOMEPAGE="http://johnhommer.com/academic/code/aghermann"
-SRC_URI="http://johnhommer.com/academic/code/aghermann/source/${P}.tar.xz"
-
-LICENSE="GPL-2+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="dev-lang/lua:*
-	dev-libs/libconfig
-	dev-libs/libunique:3
-	media-libs/libsamplerate
-	sci-libs/fftw:3.0
-	sci-libs/gsl
-	sci-libs/itpp
-	x11-libs/gtk+:3
-	x11-libs/vte:2.90"
-
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-src_configure() {
-	econf --bindir="${EPREFIX}"/bin
-}
diff --git a/sci-biology/aghermann/aghermann-1.0.4.ebuild b/sci-biology/aghermann/aghermann-1.0.4.ebuild
deleted file mode 100644
index fdde191ae..000000000
--- a/sci-biology/aghermann/aghermann-1.0.4.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-DESCRIPTION="A sleep-research experiment manager, EDF viewer & Achermann's Process S model runner"
-HOMEPAGE="http://johnhommer.com/academic/code/aghermann"
-SRC_URI="http://johnhommer.com/academic/code/aghermann/source/${P}.tar.xz"
-
-LICENSE="GPL-2+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="dev-lang/lua:*
-	dev-libs/libconfig
-	dev-libs/libunique:3
-	media-libs/libsamplerate
-	sci-libs/fftw:3.0
-	sci-libs/gsl
-	sci-libs/itpp
-	x11-libs/gtk+:3
-	x11-libs/vte:2.90"
-
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-src_configure() {
-	econf --bindir="${EPREFIX}"/usr/bin
-}
diff --git a/sci-biology/aghermann/aghermann-1.0.5.ebuild b/sci-biology/aghermann/aghermann-1.0.5.ebuild
deleted file mode 100644
index f73784ac9..000000000
--- a/sci-biology/aghermann/aghermann-1.0.5.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-DESCRIPTION="A sleep-research experiment manager, EDF viewer & Achermann's Process S model runner"
-HOMEPAGE="http://johnhommer.com/academic/code/aghermann"
-SRC_URI="http://johnhommer.com/academic/code/aghermann/source/${P}.tar.xz"
-
-LICENSE="GPL-2+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="dev-lang/lua:*
-	dev-libs/libconfig
-	dev-libs/libunique:3
-	media-libs/libsamplerate
-	sci-libs/fftw:3.0
-	sci-libs/gsl
-	sci-libs/itpp
-	x11-libs/gtk+:3
-	x11-libs/vte:2.91"
-
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-src_configure() {
-	econf --bindir="${EPREFIX}"/bin
-}
diff --git a/sci-biology/aghermann/aghermann-1.0.3-r1.ebuild b/sci-biology/aghermann/aghermann-1.0.7.ebuild
index fdde191ae..a21fc274f 100644
--- a/sci-biology/aghermann/aghermann-1.0.3-r1.ebuild
+++ b/sci-biology/aghermann/aghermann-1.0.7.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
 EAPI="5"
 
-DESCRIPTION="A sleep-research experiment manager, EDF viewer & Achermann's Process S model runner"
+DESCRIPTION="A sleep-research experiment manager, EDF viewer & Process S simulator"
 HOMEPAGE="http://johnhommer.com/academic/code/aghermann"
 SRC_URI="http://johnhommer.com/academic/code/aghermann/source/${P}.tar.xz"
 
diff --git a/sci-biology/cnrun/Manifest b/sci-biology/cnrun/Manifest
index 412a3ef6e..dac14ff7f 100644
--- a/sci-biology/cnrun/Manifest
+++ b/sci-biology/cnrun/Manifest
@@ -1 +1 @@
-DIST cnrun-2.0.2.tar.xz 378672 SHA256 608437e014dca941df0f3c229f88ab6560e187392bef8170695ca9adc5bc2520 SHA512 e2eab04c29b2529c97b048907aaadc3b928357023b4873d82323baf70076abee74ba04c76e4bd3fbbc40dd98d571d1cd722c5d3bf9cde6c68bdcc7255f4b62fe WHIRLPOOL 3dd17dce302c9d0e3bb93577a39a97d5fa56816518e1518f49cb96c365a86621ee90ebc7311a6017416b814ce0b9205116627977b54b29b162e5c9ce6d25ea3e
+DIST cnrun-2.0.3.tar.xz 383368 SHA256 c6bc6859685782a245aa0aaa8bc98e3ef40da0b3d334440a59b1ba0493a37927 SHA512 b195be69802cdc2e6fa3601a045f5aac8c14c79d744c6d4dc383430236101d0db6c830d82b44be4e88f7f67f84c58e1c085cf9999673d451bff96778a1f3d938 WHIRLPOOL 30ab488a127c2d00c038f7b78a1661ce4653386e7a50d4ed0eb4bc6160fe62f4c8d1d6ace232dda59f48443fbfe72190ecaecb5b1cf50919d9e4269ebdcf5ef9
diff --git a/sci-biology/cnrun/cnrun-2.0.2.ebuild b/sci-biology/cnrun/cnrun-2.0.3.ebuild
index 50dc81556..862ce281c 100644
--- a/sci-biology/cnrun/cnrun-2.0.2.ebuild
+++ b/sci-biology/cnrun/cnrun-2.0.3.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
 EAPI="5"
 
-DESCRIPTION="A NeuroML-enabled, neuronal network simulator w/ conductance- and rate-based HH neurons"
+DESCRIPTION="A NeuroML-enabled, precise but slow neuronal network simulator"
 HOMEPAGE="http://johnhommer.com/academic/code/cnrun"
 SRC_URI="http://johnhommer.com/academic/code/cnrun/source/${P}.tar.xz"