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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-15 10:54:09 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-15 10:54:09 +0100 |
| commit | 016a54a18482b9ade330b819a0c772a2ff74da8e (patch) | |
| tree | 8436a53f5405e012d67b07d3f3bc8407b768867b | |
| parent | sci-biology/ncbi-blast+: new package, ebuild derived from ncbi-tools++-12.0.0... (diff) | |
| download | sci-016a54a18482b9ade330b819a0c772a2ff74da8e.tar.gz sci-016a54a18482b9ade330b819a0c772a2ff74da8e.tar.bz2 sci-016a54a18482b9ade330b819a0c772a2ff74da8e.zip | |
version bump, masking a crappy package until at least the Makefile's propagate an error code back to upstream caller, https://code.google.com/p/mosaik-aligner/issues/detail?id=135
Package-Manager: portage-2.2.7
| -rw-r--r-- | sci-biology/mosaik/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/mosaik/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/mosaik/mosaik-2.2.3.ebuild (renamed from sci-biology/mosaik/mosaik-2.1.33.ebuild) | 10 |
3 files changed, 18 insertions, 5 deletions
diff --git a/sci-biology/mosaik/ChangeLog b/sci-biology/mosaik/ChangeLog index 87f4c4bbb..51160219f 100644 --- a/sci-biology/mosaik/ChangeLog +++ b/sci-biology/mosaik/ChangeLog @@ -1,7 +1,15 @@ # ChangeLog for sci-biology/mosaik -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*mosaik-2.2.3 (15 Jan 2015) + + 15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +mosaik-2.2.3.ebuild, -mosaik-2.1.33.ebuild: + version bump, masking a crappy package until at least the Makefile's + propagate an error code back to upstream caller, https://code.google.com/p + /mosaik-aligner/issues/detail?id=135 + 07 Jan 2014; Justin Lecher <jlec@gentoo.org> mosaik-2.1.33.ebuild, mosaik-9999.ebuild, metadata.xml: Readd ebuild @@ -33,4 +41,3 @@ Fastq.cpp:224, Fastq.cpp:226, Fasta.cpp:258, Fasta.cpp:260, Fasta.cpp:266, Fasta.cpp:268, but the package itself installs and executes at least mosaik-1.1.0021.ebuild - diff --git a/sci-biology/mosaik/Manifest b/sci-biology/mosaik/Manifest index e7f7074d3..c378492e7 100644 --- a/sci-biology/mosaik/Manifest +++ b/sci-biology/mosaik/Manifest @@ -1,2 +1,2 @@ -DIST MOSAIK-2.1.33-source.tar 3911680 SHA256 210764cddbd8a3866976f065b912eb30fcd94d681901be93b42724708b86e2aa SHA512 9eeda8698bc929f95ff16b4e611174f631a5affb8712d582eda7e02a45f27ea8a50ffc56c6595f837af342f266a5bfe44ca1eb006d301caef671e01ed794ba20 WHIRLPOOL 89b65f5ff47dbce615f37e4ae2d3d207cde1482f3e9d4cb280cca55c399784eeb272d3af490327b3c1ac348f7d6bdc1305df67a726acea7b9e2502df02848136 +DIST MOSAIK-2.2.3-source.tar 3819520 SHA256 b2b291603949f179d5f0686045aaf48ab34ea47001bc1e0c573adf517e8b3b28 SHA512 d60a0559dced935f736ca105569593165474134985b1d32405c8f4537dc5da7a05d89ce3a10e4536e2b4f62f622055c327abddb3783c9331465061c5f866129f WHIRLPOOL a66221037900f64c15dc6f444ff19be5bb3496625d426515b5fb33c8b181d35ab69d6f383ce92912d4354c8b9acc1d23d68c544e38db056c0ef1314875dfadcf DIST Mosaik-1.0-Documentation.pdf 10589 SHA256 470e2a534668a2a8744df7b00b9b8af5a6966d2df70f0ab1a4b271bdddadae9c SHA512 b2febce1e85eea89e5ff5d9f1aae351c59574314f361b66503ec473da7641adc083e52ee739c04abfe5b074fd57271f2ca20bea215982ee3ecfce073bbfd7b38 WHIRLPOOL 764a984408590417345daf624cda3dfb5df4255f18efc8f8cfbfc61885ed14be9863eef886dacfe90562469cd6af50220c0a776653a429b888eedac86270dc06 diff --git a/sci-biology/mosaik/mosaik-2.1.33.ebuild b/sci-biology/mosaik/mosaik-2.2.3.ebuild index bc26a056b..6bd994ba8 100644 --- a/sci-biology/mosaik/mosaik-2.1.33.ebuild +++ b/sci-biology/mosaik/mosaik-2.2.3.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -13,10 +13,16 @@ SRC_URI=" LICENSE="GPL-2 || ( MIT )" SLOT="0" IUSE="" -KEYWORDS="~amd64 ~x86" +KEYWORDS="" + +# https://code.google.com/p/mosaik-aligner/issues/detail?id=135 S="${WORKDIR}"/MOSAIK-${PV}-source +src_prepare(){ + sed -e "s@export LDFLAGS = -Wl@#export LDFLAGS = -Wl@" -i Makefile +} + src_install() { dobin "${WORKDIR}"/bin/* |