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authorJustin Lecher <jlec@gentoo.org>2010-06-08 19:57:51 +0200
committerJustin Lecher <jlec@gentoo.org>2010-06-08 19:57:51 +0200
commit09cefb263b5104ff76465e8dcfe61760e2054965 (patch)
treee5de0e0323dd4100d68d81d20c3a9ac43d895a25
parentFixed patch (diff)
downloadsci-09cefb263b5104ff76465e8dcfe61760e2054965.tar.gz
sci-09cefb263b5104ff76465e8dcfe61760e2054965.tar.bz2
sci-09cefb263b5104ff76465e8dcfe61760e2054965.zip
added missing envs
(Portage version: 2.2_rc67/git/Linux x86_64) (Signed Manifest commit)
-rw-r--r--sci-chemistry/nmrpipe/Manifest10
-rw-r--r--sci-chemistry/nmrpipe/files/env-nmrpipe4
-rw-r--r--sci-chemistry/nmrpipe/nmrpipe-5.0.2010.155.15.05.ebuild6
3 files changed, 12 insertions, 8 deletions
diff --git a/sci-chemistry/nmrpipe/Manifest b/sci-chemistry/nmrpipe/Manifest
index 52b4590f4..4775b415e 100644
--- a/sci-chemistry/nmrpipe/Manifest
+++ b/sci-chemistry/nmrpipe/Manifest
@@ -2,7 +2,7 @@
Hash: SHA1
AUX 5.0.2010.155.15.05-lib.patch 997 RMD160 09e9dbed8e1e2e4964bdf381a15b556d0ea9f3bb SHA1 881a3554f21fb23973e0b8a31b59cff495f5edbb SHA256 011aea3e38ef3eb650be7b5d6274913bbb4f5367838f4bb86f97556ad247b57f
-AUX env-nmrpipe 499 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 SHA1 8431685d268b14d88dd31cb494f0d333fff225b9 SHA256 f16820dd88ae38c8db6ffed19a97aade62f0de4c3de692b7a2c3b89897d894e2
+AUX env-nmrpipe 564 RMD160 703d03932315c67bb1cc2c894c631a64992e528f SHA1 85e7d89bb093f8cd2eacbb46f8739b157699ccb7 SHA256 1d0ba3e84285856080b6b015253c18528d38bc81156b0df79db346befc704f40
AUX env-nmrpipe-new 537 RMD160 0b8b6e53ad49c4bd280f22590e92fdf336e7b66f SHA1 3491378d2d49c867dd0f5bd661d79409b714ea53 SHA256 fbe6cec954a377bb9d957a0c1921060d2543d2b378a6beb801e6fb34796bff15
DIST NMRPipeX.tZ 150521041 RMD160 d2a9c70aac1fa81011f57821a09ac377783b80cb SHA1 064b040e758265e4cfde10fbd22738ed214fd4f5 SHA256 908aed7336312d0fe80cc87b173263a8f58da51c9ca9c9da13de531412664baf
DIST acme.tar.Z 11681951 RMD160 fdcf35fab1b63ddda55288b1b2ed0f82c8299bef SHA1 5093f92a4d7e4173bc056b6b1922a6da8e6bbf0c SHA256 5713452a1461e636f0de48e5ce3476fc0ae60b3f78a0288744f45e455f3445d9
@@ -11,13 +11,13 @@ DIST dyn.tZ 139928217 RMD160 1b6324b0c7eb2deccd3228a635aa4052df095ad5 SHA1 8abcc
DIST install.com 36561 RMD160 680403d59dfb65046694a64d5e43b378f1bf3a71 SHA1 8d8e9b36d20206083cfe691358e8a346b5e59832 SHA256 86bbb20e9a2b5007450758d1ad44df497f54d6d34199e5d888c1ab92dee11626
DIST talos.tZ 32728853 RMD160 d05b93ee937024d8ad0a12d394649ed08ba659fe SHA1 a2ec99fdcb326dcf64ec9ffdcd53cbfdb0fa5e93 SHA256 9e3608cd7c1c84710360722c4fdf8579450c50d8ad811736d19b20ca03371b1c
DIST valpha_all.tar 699166720 RMD160 75ebf0a84524212cd25d62ba33f6a5edca05dd20 SHA1 a8be07ac97a826e44ed240946217a50fd3e8ba1e SHA256 3f2ff243e1d0e2508f20ec1ab6108eb986bcc1bc4c9ec79b4ff8ce6584805b0a
-EBUILD nmrpipe-5.0.2010.155.15.05.ebuild 4703 RMD160 385bdf7f68cf927064994da958c4afe7fdb58c45 SHA1 0fd3582eb2ba195c0a56b07fc50d6d61adcf0fab SHA256 b3fdb78dca25c30f48a8bf835fe410be85d252211cc1524b324def5cdfe3f7af
+EBUILD nmrpipe-5.0.2010.155.15.05.ebuild 4719 RMD160 26662a5dd8124fdd97390d66db513e6f486d241c SHA1 153e8996bd65294b7ea7c94b410eec38600ce093 SHA256 c969db73a557ec5343767834f061582cab94e9e7ab32dfcc849750e43ef410dd
MISC ChangeLog 5926 RMD160 a8d06421b6b8510c7d644d59acbc65d21e02ec6d SHA1 45f63940485116e59f294786aa2809ccd022eb9c SHA256 206e185e38a7b3d531912fcb15a8d86151e67599e06a5d29e8a36607d6cc0e33
MISC metadata.xml 273 RMD160 77dd0acbd8530bfceee840dfeccd1f4228e0460b SHA1 7c6794b74e4f357c0cd501266226eda09417d6ee SHA256 ed6f9e4b8aa59f68498bb75bf3be63a6de60feda167e4ceb12c7cb81bf8aac09
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v2.0.15 (GNU/Linux)
-iEYEARECAAYFAkwN+a4ACgkQgAnW8HDreRa8TgCgnWxnjVRYEyvEpg0mERhJLMK6
-uiYAn1S5UpmxEDVv+cTq2WnfyiB6iU5l
-=RT2v
+iEYEARECAAYFAkwOhJ8ACgkQgAnW8HDreRaRIwCgz2RfriTdCtt7XHJKvFVWW8rU
+46cAnj2QEK0D7pFF+ZUEpzOaRG3Kkoz+
+=pRfh
-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/nmrpipe/files/env-nmrpipe b/sci-chemistry/nmrpipe/files/env-nmrpipe
index beb9d707e..1ca8dbb6e 100644
--- a/sci-chemistry/nmrpipe/files/env-nmrpipe
+++ b/sci-chemistry/nmrpipe/files/env-nmrpipe
@@ -9,6 +9,9 @@ PATH="${NMRBASE}/bin"
# Auxiliary NMRPipe scripts
# PATH="${PATH}:${NMRBASE}/com"
+TALOS_DIR="${NMRBASE}/talos"
+TALOSP_DIR="${NMRBASE}/talosplus"
+
# Dynamo
DYNAMO_DIR="${NMRBASE}/dynamo"
DYNAMO_PARAMS="${DYNAMO_DIR}/params"
@@ -21,3 +24,4 @@ PDBH_BASE="${NMRBASE}/pdb"
PDBH_DIR="${PDBH_BASE}/pdbH"
PDBH_LIST="${PDBH_BASE}/pdbH.list"
PDBH_TAB="${PDBH_BASE}/resolution.tab"
+
diff --git a/sci-chemistry/nmrpipe/nmrpipe-5.0.2010.155.15.05.ebuild b/sci-chemistry/nmrpipe/nmrpipe-5.0.2010.155.15.05.ebuild
index 8b19ce889..9a382d6a5 100644
--- a/sci-chemistry/nmrpipe/nmrpipe-5.0.2010.155.15.05.ebuild
+++ b/sci-chemistry/nmrpipe/nmrpipe-5.0.2010.155.15.05.ebuild
@@ -124,10 +124,10 @@ src_install() {
# Remove installation log files.
rm README_NMRPIPE_USERS *.log || die "Failed to remove installation log."
# Remove unused binaries
- rm talos/bin/TALOS.{linux,mac,sgi6x,winxp} pdb/misc/addSeg || die
+ rm talos*/bin/TALOS.{linux,mac,sgi6x,winxp} pdb/misc/addSeg || die
# Set the correct path to NMRPipe in the auxiliary scripts.
- for i in $(find com/ dynamo/surface/misc/ nmrtxt/ talos/misc -type f); do
+ for i in $(find com/ dynamo/surface/misc/ nmrtxt/ talos/misc talosplus/com -type f); do
sed -e "s%/u/delaglio%${ENMRBASE}%" -i ${i} || die \
"Failed patching scripts."
done
@@ -147,7 +147,7 @@ src_install() {
# fperms does not chmod nmrwish
# fperms -v 775 ${NMRBASE}/{talos/bin,nmrbin.linux9,com,dynamo/tcl}/* || die
- chmod -c 775 "${ED}"/${NMRBASE}/{talos/bin,nmrbin.linux9,com,dynamo/tcl}/* || die
+ chmod -c 775 "${ED}"/${NMRBASE}/{talos*/bin,nmrbin.linux9,com,dynamo/tcl}/* || die
exeinto ${NMRBASE}/nmrbin.linux9
doexe "${T}"/nmrWish || die