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authorJustin Lecher <jlec@gentoo.org>2015-10-16 15:38:31 +0200
committerJustin Lecher <jlec@gentoo.org>2015-10-16 15:38:31 +0200
commit1037f2c1ee00dc5b87dd7979f1fbe093885236eb (patch)
tree83624548ea1bb18d18461bb196ddc7bdf31e9cff
parentsci-biology/atsas: Fix installation of missing libs (diff)
downloadsci-1037f2c1ee00dc5b87dd7979f1fbe093885236eb.tar.gz
sci-1037f2c1ee00dc5b87dd7979f1fbe093885236eb.tar.bz2
sci-1037f2c1ee00dc5b87dd7979f1fbe093885236eb.zip
Update remote-ids
Signed-off-by: Justin Lecher <jlec@gentoo.org>
-rw-r--r--app-benchmarks/numbench/metadata.xml5
-rw-r--r--app-doc/root-docs/metadata.xml31
-rw-r--r--dev-cpp/eigen/metadata.xml7
-rw-r--r--dev-ml/lacaml/metadata.xml7
-rw-r--r--dev-perl/BTLib/metadata.xml5
-rw-r--r--profiles/use.local.desc1
-rw-r--r--sci-astronomy/mosstack/metadata.xml3
-rw-r--r--sci-biology/Atlas2/metadata.xml5
-rw-r--r--sci-biology/IMAGE/metadata.xml5
-rw-r--r--sci-biology/NGSTools/metadata.xml5
-rw-r--r--sci-biology/OBO-Edit/metadata.xml5
-rw-r--r--sci-biology/STAR/metadata.xml5
-rw-r--r--sci-biology/conifer/metadata.xml5
-rw-r--r--sci-biology/flexbar/metadata.xml5
-rw-r--r--sci-biology/gap2caf/metadata.xml5
-rw-r--r--sci-biology/kallisto/metadata.xml5
-rw-r--r--sci-biology/mne-python/metadata.xml5
-rw-r--r--sci-biology/pb-honey/metadata.xml5
-rw-r--r--sci-biology/pb-jelly/metadata.xml5
-rw-r--r--sci-biology/psychopy/metadata.xml5
-rw-r--r--sci-biology/pysam/metadata.xml3
-rw-r--r--sci-biology/pysurfer/metadata.xml5
-rw-r--r--sci-biology/quast/metadata.xml5
-rw-r--r--sci-biology/subread/metadata.xml5
-rw-r--r--sci-libs/elmer-eio/metadata.xml5
-rw-r--r--sci-libs/elmer-hutiter/metadata.xml5
-rw-r--r--sci-libs/matc/metadata.xml6
-rw-r--r--sci-libs/nibabel/metadata.xml7
-rw-r--r--sci-misc/elmer-elmergrid/metadata.xml5
-rw-r--r--sci-misc/elmer-fem/metadata.xml5
-rw-r--r--sci-misc/elmer-front/metadata.xml5
-rw-r--r--sci-misc/elmer-meshgen2d/metadata.xml5
-rw-r--r--sci-misc/elmer-post/metadata.xml5
-rw-r--r--sci-visualization/forge/metadata.xml5
34 files changed, 147 insertions, 48 deletions
diff --git a/app-benchmarks/numbench/metadata.xml b/app-benchmarks/numbench/metadata.xml
index 03b2c774e..8ef66ad8f 100644
--- a/app-benchmarks/numbench/metadata.xml
+++ b/app-benchmarks/numbench/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
@@ -8,4 +8,7 @@
<description>Google Summer of Code 2011 student</description>
</maintainer>
<longdescription>This package contains a set of scripts developed during the Google Summer of Code 2011 project. It aims to benchmark numerical libraries, and more precisely implementations of the standard BLAS, CBLAS, LAPACK, PBLAS, ScaLAPACK and the library FFTW.</longdescription>
+ <upstream>
+ <remote-id type="github">andyspiros/numbench</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/app-doc/root-docs/metadata.xml b/app-doc/root-docs/metadata.xml
index 10a4d1cf5..97772ba5c 100644
--- a/app-doc/root-docs/metadata.xml
+++ b/app-doc/root-docs/metadata.xml
@@ -1,19 +1,22 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<maintainer>
- <email>bircoph@gentoo.org</email>
- <name>Andrew Savchenko</name>
-</maintainer>
-<herd>sci-physics</herd>
-<longdescription lang="en">
+ <maintainer>
+ <email>bircoph@gentoo.org</email>
+ <name>Andrew Savchenko</name>
+ </maintainer>
+ <herd>sci-physics</herd>
+ <longdescription lang="en">
This package contains the automatically generated ROOT class
documentation.
-</longdescription>
-<use>
- <flag name="api">Generate html API documentation</flag>
- <flag name="http">Build HttpServer documentation</flag>
- <flag name="math">Provide all math related documentation</flag>
- <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag>
-</use>
+ </longdescription>
+ <use>
+ <flag name="api">Generate html API documentation</flag>
+ <flag name="http">Build HttpServer documentation</flag>
+ <flag name="math">Provide all math related documentation</flag>
+ <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag>
+ </use>
+ <upstream>
+ <remote-id type="sourceforge">tmva</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml
index 989a1de8d..187b1deba 100644
--- a/dev-cpp/eigen/metadata.xml
+++ b/dev-cpp/eigen/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
@@ -8,7 +8,7 @@
focuses on the simple mathematical needs of applications: games and other
OpenGL apps, spreadsheets and other office apps, etc. Eigen is dedicated to
providing optimal speed with GCC.
-</longdescription>
+ </longdescription>
<use>
<flag name="adolc">
Enable automatic differentiation using <pkg>sci-libs/adolc</pkg>
@@ -25,4 +25,7 @@
Enable use for extra sparse matrix with <pkg>sci-libs/umfpack</pkg>, <pkg>sci-libs/cholmod</pkg>, <pkg>sci-libs/superlu</pkg> and <pkg>dev-cpp/sparsehash</pkg>
</flag>
</use>
+ <upstream>
+ <remote-id type="bitbucket">eigen/eigen</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/dev-ml/lacaml/metadata.xml b/dev-ml/lacaml/metadata.xml
index e0b7a097d..277894b95 100644
--- a/dev-ml/lacaml/metadata.xml
+++ b/dev-ml/lacaml/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<longdescription lang="en">
BLAS/LAPACK-interface for OCaml
-</longdescription>
+ </longdescription>
+ <upstream>
+ <remote-id type="bitbucket">mmottl/lacaml</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml
index f17a827e3..15d69c95b 100644
--- a/dev-perl/BTLib/metadata.xml
+++ b/dev-perl/BTLib/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
+ <upstream>
+ <remote-id type="sourceforge">downloads</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/profiles/use.local.desc b/profiles/use.local.desc
index f1e49d2a1..5c505f4fd 100644
--- a/profiles/use.local.desc
+++ b/profiles/use.local.desc
@@ -58,6 +58,7 @@ sci-astronomy/psfex:plplot - Build with sci-libs/plplot to allow diagnostic plot
sci-astronomy/scamp:plplot - Build with sci-libs/plplot to allow diagnostic plots during processing
sci-astronomy/sextractor:modelfit - Enable profile model fitting, needs sci-libs/atlas and sci-libs/fftw
sci-astronomy/zpeg:gdl - Install GDL/IDL plotting routines
+sci-biology/bowtie:tbb - Enables building bowtie with the Intel Threading Building Blocks from dev-cpp/tbb. This flag is recommended.
sci-biology/discrover:cairo - Use Cairo for sequence logo plotting capabilities
sci-biology/discrover:dreme - Enable usage of DREME from the MEME package for seeding
sci-biology/discrover:lto - Compile with link-time optimization (LTO)
diff --git a/sci-astronomy/mosstack/metadata.xml b/sci-astronomy/mosstack/metadata.xml
index e425fd595..df6b1b00e 100644
--- a/sci-astronomy/mosstack/metadata.xml
+++ b/sci-astronomy/mosstack/metadata.xml
@@ -17,4 +17,7 @@
<flag name="qt4">Pulls in PyQt4. Program works on command line interface
without it but for GUI the library is required.</flag>
</use>
+ <upstream>
+ <remote-id type="bitbucket">mikko_laine/mosstack</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml
index 2bc893037..b6165f3f2 100644
--- a/sci-biology/Atlas2/metadata.xml
+++ b/sci-biology/Atlas2/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">downloads</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml
index 2bc893037..66a27d451 100644
--- a/sci-biology/IMAGE/metadata.xml
+++ b/sci-biology/IMAGE/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">image2</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml
index 2bc893037..2df61f4c4 100644
--- a/sci-biology/NGSTools/metadata.xml
+++ b/sci-biology/NGSTools/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">ngsep</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml
index 07b525505..c0878bce6 100644
--- a/sci-biology/OBO-Edit/metadata.xml
+++ b/sci-biology/OBO-Edit/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">geneontology</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml
index 2bc893037..c91b750b3 100644
--- a/sci-biology/STAR/metadata.xml
+++ b/sci-biology/STAR/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="github">alexdobin/STAR</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
index 2bc893037..b6165f3f2 100644
--- a/sci-biology/conifer/metadata.xml
+++ b/sci-biology/conifer/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">downloads</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/flexbar/metadata.xml b/sci-biology/flexbar/metadata.xml
index 07b525505..2b8f8cd55 100644
--- a/sci-biology/flexbar/metadata.xml
+++ b/sci-biology/flexbar/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">flexbar</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/gap2caf/metadata.xml b/sci-biology/gap2caf/metadata.xml
index 2bc893037..b6165f3f2 100644
--- a/sci-biology/gap2caf/metadata.xml
+++ b/sci-biology/gap2caf/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">downloads</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml
index b7551a6aa..39256c406 100644
--- a/sci-biology/kallisto/metadata.xml
+++ b/sci-biology/kallisto/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mschu.dev@gmail.com</email>
<name>Michael Schubert</name>
</maintainer>
+ <upstream>
+ <remote-id type="github">pachterlab/kallisto</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/mne-python/metadata.xml b/sci-biology/mne-python/metadata.xml
index 897aa2e6b..341e626b0 100644
--- a/sci-biology/mne-python/metadata.xml
+++ b/sci-biology/mne-python/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="github">mne-tools/mne-python</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml
index 2bc893037..cf881b1c2 100644
--- a/sci-biology/pb-honey/metadata.xml
+++ b/sci-biology/pb-honey/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">pb-jelly</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml
index 2bc893037..cf881b1c2 100644
--- a/sci-biology/pb-jelly/metadata.xml
+++ b/sci-biology/pb-jelly/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">pb-jelly</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/psychopy/metadata.xml b/sci-biology/psychopy/metadata.xml
index 6d519f514..89798a05f 100644
--- a/sci-biology/psychopy/metadata.xml
+++ b/sci-biology/psychopy/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>h.chr@mail.ru</email>
<name>TheChymera</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">psychpy</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml
index 49afc3c3d..de38eb59c 100644
--- a/sci-biology/pysam/metadata.xml
+++ b/sci-biology/pysam/metadata.xml
@@ -1,8 +1,9 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
<upstream>
<remote-id type="google-code">pysam</remote-id>
+ <remote-id type="github">pysam-developers/pysam</remote-id>
</upstream>
</pkgmetadata>
diff --git a/sci-biology/pysurfer/metadata.xml b/sci-biology/pysurfer/metadata.xml
index 897aa2e6b..c1e283f80 100644
--- a/sci-biology/pysurfer/metadata.xml
+++ b/sci-biology/pysurfer/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="github">nipy/PySurfer</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml
index 2bc893037..62eb78998 100644
--- a/sci-biology/quast/metadata.xml
+++ b/sci-biology/quast/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">quast</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/subread/metadata.xml b/sci-biology/subread/metadata.xml
index 2bc893037..ed99a6dc9 100644
--- a/sci-biology/subread/metadata.xml
+++ b/sci-biology/subread/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">subread</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-libs/elmer-eio/metadata.xml b/sci-libs/elmer-eio/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-libs/elmer-eio/metadata.xml
+++ b/sci-libs/elmer-eio/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-libs/elmer-hutiter/metadata.xml b/sci-libs/elmer-hutiter/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-libs/elmer-hutiter/metadata.xml
+++ b/sci-libs/elmer-hutiter/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-libs/matc/metadata.xml b/sci-libs/matc/metadata.xml
index 897aa2e6b..56811e855 100644
--- a/sci-libs/matc/metadata.xml
+++ b/sci-libs/matc/metadata.xml
@@ -1,5 +1,9 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="github">ElmerCSC/elmerfem</remote-id>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-libs/nibabel/metadata.xml b/sci-libs/nibabel/metadata.xml
index bb00d121f..741d32a28 100644
--- a/sci-libs/nibabel/metadata.xml
+++ b/sci-libs/nibabel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
@@ -12,8 +12,11 @@
NIfTI1, MINC, MGH and ECAT as well as PAR/REC. It can read and write Freesurfer
geometry, and read Freesurfer morphometry and annotation files. There is some
very limited support for DICOM. NiBabel is the successor of PyNIfTI.
-</longdescription>
+ </longdescription>
<use>
<flag name="dicom">Adds limited read support for the DICOM imaging format.</flag>
</use>
+ <upstream>
+ <remote-id type="github">nipy/nibabel</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-misc/elmer-elmergrid/metadata.xml b/sci-misc/elmer-elmergrid/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-misc/elmer-elmergrid/metadata.xml
+++ b/sci-misc/elmer-elmergrid/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-misc/elmer-fem/metadata.xml b/sci-misc/elmer-fem/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-misc/elmer-fem/metadata.xml
+++ b/sci-misc/elmer-fem/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-misc/elmer-front/metadata.xml b/sci-misc/elmer-front/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-misc/elmer-front/metadata.xml
+++ b/sci-misc/elmer-front/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-misc/elmer-meshgen2d/metadata.xml b/sci-misc/elmer-meshgen2d/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-misc/elmer-meshgen2d/metadata.xml
+++ b/sci-misc/elmer-meshgen2d/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-misc/elmer-post/metadata.xml b/sci-misc/elmer-post/metadata.xml
index 897aa2e6b..a7353d90b 100644
--- a/sci-misc/elmer-post/metadata.xml
+++ b/sci-misc/elmer-post/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">elmerfem.svn</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-visualization/forge/metadata.xml b/sci-visualization/forge/metadata.xml
index e01edcd11..4cb579f61 100644
--- a/sci-visualization/forge/metadata.xml
+++ b/sci-visualization/forge/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
@@ -13,4 +13,7 @@
uses OpenGL &gt;=3.3 forward compatible contexts, so please make sure
you have capable hardware before trying it out.
</longdescription>
+ <upstream>
+ <remote-id type="github">arrayfire/forge</remote-id>
+ </upstream>
</pkgmetadata>