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authorFrançois Bissey <f.r.bissey@massey.ac.nz>2010-01-18 23:27:59 +1300
committerFrançois Bissey <f.r.bissey@massey.ac.nz>2010-01-18 23:27:59 +1300
commit1a34c6311e4028237326487f193928f35934b862 (patch)
treea75b9d7cf156d4967a59ddf5b9e6c164c85bc0b9
parentOnly mask the paraview version in the science overlay (diff)
downloadsci-1a34c6311e4028237326487f193928f35934b862.tar.gz
sci-1a34c6311e4028237326487f193928f35934b862.tar.bz2
sci-1a34c6311e4028237326487f193928f35934b862.zip
Remove paraview as it has been revbumped in the main tree by Markus Dittrich
-rw-r--r--sci-visualization/paraview/ChangeLog236
-rw-r--r--sci-visualization/paraview/Manifest13
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-VTK-cg-path.patch34
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-assistant.patch24
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-hdf-1.8.3.patch71
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-install-fix.patch127
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-no-doc-finder.patch18
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-pointsprite-disable.patch13
-rw-r--r--sci-visualization/paraview/files/paraview-3.6.1-qt.patch147
-rw-r--r--sci-visualization/paraview/metadata.xml15
-rw-r--r--sci-visualization/paraview/paraview-3.6.1-r2.ebuild276
11 files changed, 0 insertions, 974 deletions
diff --git a/sci-visualization/paraview/ChangeLog b/sci-visualization/paraview/ChangeLog
deleted file mode 100644
index 810d23384..000000000
--- a/sci-visualization/paraview/ChangeLog
+++ /dev/null
@@ -1,236 +0,0 @@
-# ChangeLog for sci-visualization/paraview
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-visualization/paraview/ChangeLog,v 1.43 2009/11/24 04:05:41 markusle Exp $
-
- 16 Dec 2009; François Bissey <f.r.bissey@massey.ac.nz>
- paraview-3.6.1-r2.ebuild, +files/paraview-3.6.1-VTK-cg-path.patch,
- metadata.xml:
- Added a patch for nvidia-cg-toolkit detection, cmake-utils eclass use
- update, flag sorting improvement and cleaning, OverView install
- tweaks.
-
-*paraview-3.6.1-r2 (14 Dec 2009)
-
- 14 Dec 2009; François Bissey <f.r.bissey@massey.ac.nz>
- +paraview-3.6.1-r2.ebuild, +files/paraview-3.6.1-assistant.patch,
- +files/paraview-3.6.1-hdf-1.8.3.patch,
- +files/paraview-3.6.1-install-fix.patch,
- +files/paraview-3.6.1-no-doc-finder.patch,
- +files/paraview-3.6.1-pointsprite-disable.patch,
- +files/paraview-3.6.1-qt.patch, +metadata.xml:
- port to cmake-utils.eclass, changed the useflags, provide for the building
- of most of the plugins depending on useflags. Build and
- install the experimental OverView application and its plugins.
-
- 24 Nov 2009; Markus Dittrich <markusle@gentoo.org>
- paraview-3.6.1-r1.ebuild:
- Removed boost from RDEPEND (fixes bug #293086).
-
- 09 Oct 2009; Markus Dittrich <markusle@gentoo.org>
- paraview-3.6.1-r1.ebuild:
- Make sure to use the paraview provided OpenGl headers rather than
- the system ones since newer OpenGL-3.2 stuff breaks vtk's header
- parsing framework (fixes bug #287500).
-
- 05 Aug 2009; Markus Dittrich <markusle@gentoo.org>
- -files/paraview-3.2.1-openmpi.patch, -paraview-3.3_pre20080514.ebuild,
- -files/paraview-3.3_pre20080514-gcc4.3.patch,
- -files/paraview-3.3_pre20080514-hdf5.patch,
- -files/paraview-3.3_pre20080514-qt4.4.patch, -paraview-3.4.0.ebuild,
- -files/paraview-3.4.0-qt4.4-5.patch:
- Removed old ebuilds and patches.
-
-*paraview-3.6.1-r1 (29 Jul 2009)
-
- 29 Jul 2009; Markus Dittrich <markusle@gentoo.org>
- +paraview-3.6.1-r1.ebuild:
- New revision. paraview-3.6.1 should now be able to coexist with vtk
- (#279264).
-
- 28 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.6.1.ebuild,
- +files/paraview-3.6.1-no-doc-finder.patch:
- Added patch and fixes to ebuild to remove several install location
- snafus.
-
- 27 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.6.1.ebuild:
- Have paraview block vtk until a better solution is found (#279264).
-
- 26 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.6.1.ebuild:
- Disabled building of tests since they seem to fail for a number
- of people (#279002 and #278982).
-
- 25 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.6.1.ebuild:
- Only apply hdf5 patch conditional on >=hdf-1.8.0 (bug #279060).
-
- 25 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.6.1.ebuild:
- Remove threads useflag and always force compilation against pthreads.
-
-*paraview-3.6.1 (23 Jul 2009)
-
- 23 Jul 2009; Markus Dittrich <markusle@gentoo.org>
- -files/paraview-2.6.0-hdf5-zlib.patch,
- -files/paraview-2.6.0-include.patch, -files/paraview-2.6.2-tkImgGIF.patch,
- -paraview-3.2.1.ebuild, -files/paraview-3.2-libxml2-fix.patch,
- -files/paraview-3.2-support-qt4.3.patch, +paraview-3.6.1.ebuild,
- +files/paraview-3.6.1-assistant.patch,
- +files/paraview-3.6.1-hdf-1.8.3.patch,
- +files/paraview-3.6.1-install-fix.patch,
- +files/paraview-3.6.1-pointsprite-disable.patch,
- +files/paraview-3.6.1-qt.patch, metadata.xml:
- Version bump (bug #278563) and big cleanup.
- A big "Thank you!" goes to Takuya OSHIMA for his great help
- with the OpenFoam reader and Oliver Borm for testing.
-
- 16 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.4.0.ebuild:
- More ebuild cleanups.
-
- 14 Jul 2009; Markus Dittrich <markusle@gentoo.org> paraview-3.4.0.ebuild,
- +files/paraview-3.4.0-qt4.4-5.patch:
- Added support for >=qt4.4 to 3.4.0 ebuild.
-
- 13 Jun 2009; Justin Bronder <jsbronder@gentoo.org> -paraview-2.6.2.ebuild:
- Removing paraview-2.6.2, depends on sys-cluster/mpich which is going
- away (#266565).
-
- 05 Nov 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.4.0.ebuild:
- Updated OpenFOAM patch. Thank much to Takuya OSHIMA for his help.
-
- 31 Oct 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.4.0.ebuild:
- Switched install location from paraview-3.4.0 to paraview-3.4.
-
- 30 Oct 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.4.0.ebuild:
- Fixed wrong installation path and went back to EAPI=1 to ease
- installation for users of the stable branch. Also rolled back the
- OpenFOAM patch one version since the newer seems to cause problems.
-
-*paraview-3.4.0 (28 Oct 2008)
-
- 28 Oct 2008; Markus Dittrich <markusle@gentoo.org> +paraview-3.4.0.ebuild:
- Version bump (see bug #243362).
-
- 22 Oct 2008; Markus Dittrich <markusle@gentoo.org>
- paraview-3.3_pre20080514.ebuild:
- Apply hdf5 patch only when USE="hdf5" since it interferes otherwise.
-
- 15 Oct 2008; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-3.3_pre20080514-hdf5.patch,
- files/paraview-3.3_pre20080514-gcc4.3.patch,
- paraview-3.3_pre20080514.ebuild:
- Added patch to fix issues due to changed API in >=hdf5-1.6.7
- (fixes bug #242184). Also updated gcc-4 patch.
-
- 29 Jul 2008; Markus Dittrich <markusle@gentoo.org>
- paraview-3.3_pre20080514.ebuild:
- Added OpenFOAM-1.5 support patch (fixes bug #233191). Thanks much to
- Takuya OSHIMA <oshima@eng.niigata-u.ac.jp> for providing a
- customized patch and Oliver Borm <oli.borm@web.de> for his patch.
-
- 28 Jul 2008; Carsten Lohrke <carlo@gentoo.org> paraview-3.2.1.ebuild:
- QA: Get rid of deprecated qt4_min_version().
-
- 27 Jul 2008; Carsten Lohrke <carlo@gentoo.org>
- paraview-3.3_pre20080514.ebuild:
- Fix broken split Qt 4.4 dependencies, cf. bug 217161 comment 11.
-
- 27 May 2008; Markus Dittrich <markusle@gentoo.org> ChangeLog:
- Removed package from package.mask.
-
- 26 May 2008; Markus Dittrich <markusle@gentoo.org>
- -files/paraview-3.3_pre20080514-qt.patch,
- +files/paraview-3.3_pre20080514-qt4.4.patch,
- paraview-3.3_pre20080514.ebuild:
- Added support for qt4, fixed bogus /usr/plugin install directory and
- depend explicitly on eselect-opengl to avoid missing declarations
- in older glext header files.
-
-*paraview-3.3_pre20080514 (15 May 2008)
-
- 15 May 2008; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-3.3_pre20080514-gcc4.3.patch,
- +files/paraview-3.3_pre20080514-qt.patch,
- +paraview-3.3_pre20080514.ebuild:
- Added development version which fixes the non-functioning
- screenshot feature (see bug #220477).
-
- 12 May 2008; Markus Dittrich <markusle@gentoo.org> paraview-2.6.2.ebuild,
- paraview-3.2.1.ebuild:
- Removed runtime dependency on app-doc/doxygen (fixes bug #221689).
-
- 20 Feb 2008; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-3.2.1-openmpi.patch, paraview-3.2.1.ebuild:
- Enabled support for openmpi and mpich2 (see bug #210639).
-
- 15 Feb 2008; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-2.6.2-tkImgGIF.patch, paraview-2.6.2.ebuild:
- Added patch to take care of SA28784 and CVE-2008-0553 (see bug #208464).
-
- 14 Feb 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.2.1.ebuild:
- Added pkg_setup logic and EAPI=1 in response to updated qt4.eclass
- (see bug #210062). Thanks much to Jakub Moc <jakub@gentoo.org> for
- the fix.
-
- 21 Jan 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.2.1.ebuild:
- Fixed improper MPI cmake option (bug #206840).
-
- 19 Jan 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.2.1.ebuild:
- Let the qt4 eclass check for qt3support.
-
- 05 Jan 2008; Markus Dittrich <markusle@gentoo.org> paraview-3.2.1.ebuild:
- Added patch to support OpenFOAM (see bug #202685). Thanks much to
- Oliver Borm <oli.borm@web.de> for his help and patch.
-
-*paraview-3.2.1 (14 Dec 2007)
-
- 14 Dec 2007; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-3.2-libxml2-fix.patch,
- +files/paraview-3.2-support-qt4.3.patch, +paraview-3.2.1.ebuild:
- Version bump (fixes bug #183192).
-
- 19 Aug 2007; Markus Dittrich <markusle@gentoo.org>
- -files/paraview-2.4.4-hdf5-zlib.patch, -files/paraview-2.4.4-png.patch,
- -files/paraview-2.4.4-python-wrap.patch, -paraview-2.4.4.ebuild,
- -paraview-2.6.0.ebuild, -paraview-2.6.1.ebuild:
- Removed obsolete versions.
-
-*paraview-2.6.2 (25 Jul 2007)
-
- 25 Jul 2007; Markus Dittrich <markusle@gentoo.org> +paraview-2.6.2.ebuild:
- Version bump. Thanks much to Daniel Tourde <daniel.tourde@bredband.net>
- for helping with the ebuild.
-
- 22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>;
- paraview-2.4.4.ebuild, paraview-2.6.0.ebuild, paraview-2.6.1.ebuild:
- Drop virtual/x11 references.
-
-*paraview-2.6.1 (24 Apr 2007)
-
- 24 Apr 2007; Markus Dittrich <markusle@gentoo.org> +paraview-2.6.1.ebuild:
- Version bump. Dropped ffmpeg keyword for now since the build
- fails due to undefined macros in one of the ffmpeg headers.
- Thanks much to Sebastien Fabbro <bicatali@gentoo.org>
- for his ebuild.
-
-*paraview-2.6.0 (20 Feb 2007)
-
- 20 Feb 2007; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-2.6.0-hdf5-zlib.patch,
- +files/paraview-2.6.0-include.patch, +paraview-2.6.0.ebuild:
- Version bump.
-
- 29 Nov 2006; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-2.4.4-python-wrap.patch, paraview-2.4.4.ebuild:
- Added patch that ensures that all dynamic libs needed for pvpython
- are present.
-
- 20 Nov 2006; Markus Dittrich <markusle@gentoo.org> paraview-2.4.4.ebuild:
- Added ffmpeg and threads USE flags. Also, added paraview libdir
- to LDPATH.
-
-*paraview-2.4.4 (18 Oct 2006)
-
- 18 Oct 2006; Markus Dittrich <markusle@gentoo.org>
- +files/paraview-2.4.4-hdf5-zlib.patch, +files/paraview-2.4.4-png.patch,
- +metadata.xml, +paraview-2.4.4.ebuild:
- Initial import (fixes bug #118130). Many thanks to Daniel Tourde
- <daniel.tourde@caelae.se> for his ebuild and testing.
-
diff --git a/sci-visualization/paraview/Manifest b/sci-visualization/paraview/Manifest
deleted file mode 100644
index 6b4416dd6..000000000
--- a/sci-visualization/paraview/Manifest
+++ /dev/null
@@ -1,13 +0,0 @@
-AUX paraview-3.6.1-VTK-cg-path.patch 1080 RMD160 2de9562c21b9b4809e47ec954b0449acab4ce108 SHA1 c42ac9da88c7d1138cad608875788ebc4a5f6e3b SHA256 2366393c65e2dc22121c1419f913112435d7349ae9fb2ab2d04b5a359dcfe9c5
-AUX paraview-3.6.1-assistant.patch 1122 RMD160 4f6ecb6bd6105b3b4a5a7848782cfe92e6741d18 SHA1 81b47c0a30336fbfb45d55f2480474c994d7f820 SHA256 62fbe1310ee8f0c2405ff12cfe9edb50100e654678e7fb823f78084f284130d3
-AUX paraview-3.6.1-hdf-1.8.3.patch 2763 RMD160 f6a557565e75541e74b7052cdbd797e56e39f85b SHA1 d70f2b2715b3cebecb2db82d8c05b60fbb0220d1 SHA256 97247cc3fcb887de3bbf73a80ecda270c7f282802c365b21f20c518b76f2d3be
-AUX paraview-3.6.1-install-fix.patch 6861 RMD160 4c65e8f95670a740b67146cbf943e8d6340e4857 SHA1 17d02c81884f5a1c56832a26026265e53aa18566 SHA256 aa991a873f3f692981df75ff20dc67d55ab38fc8de2ee3b11d05326419d4b2c1
-AUX paraview-3.6.1-no-doc-finder.patch 787 RMD160 e3669d31061d69cb2007be0aa9be2d83de465745 SHA1 591e47194d9a02bc0277906cb3aac1742a6bee37 SHA256 7c264e9ab359928f5d3d23369b07ea9a698554434357744622f1267a2df732b6
-AUX paraview-3.6.1-pointsprite-disable.patch 617 RMD160 bef259c2e5edf7b3a8af32a204432d2761ac0834 SHA1 624f682127a5b382475bd0e7a65cab1b9c51c228 SHA256 fb413c38df3461c8840de776442de37171bfeabc42d83be8699d205d41b7b4d6
-AUX paraview-3.6.1-qt.patch 7544 RMD160 0396a656029cc1f9562e6b16eb739a8e7960565a SHA1 409c19532bc2ed48cb22c344e1d9db0960147e9a SHA256 d678173f19a393010949582e8353b3e9436fd02bea940a0df49cda90ed4874a4
-DIST paraview-3.6.1-openfoam-gpl-r120.patch.bz2 3180 RMD160 224b93d767864043c26eff12fe8843d82a9c8d54 SHA1 683d29cb4e05641928435685abcf96aa296e8794 SHA256 b05e3c9ce20d149ad40f7f3e9bc63f7e197f83eeae7fca6aad6e060c3d585fc4
-DIST paraview-3.6.1-openfoam-r120.patch.bz2 58046 RMD160 dec759a9d0bebd83bee6d998cefb25ab0b74ead2 SHA1 83dad388583da99600876055424df3cf7f87b4a5 SHA256 047a1908b7995ef5569c8fcf0b4e2c7aa8239b11b08f0854bbee7cabf9ac026a
-DIST paraview-3.6.1.tar.gz 27119089 RMD160 8892434c1096d18e83bce6c62f1a7b07a8be1f0a SHA1 aedbe3bf8d831816972129c185565b582e331b53 SHA256 df71c052a4f85a568d3e4a4b55abb257c976795492d3991e32fe4100c3fd8a4e
-EBUILD paraview-3.6.1-r2.ebuild 10189 RMD160 4c0e7d3e3f55afb208c9f45332bcb69302538462 SHA1 91eb401e564df785893506289c678c2607e953eb SHA256 97dee931bd45eaeaf4cf099df30b48507022650b1d9d16c33556a4c268abe21f
-MISC ChangeLog 9828 RMD160 08ca0b83588f8678eed00799c133de440b4f5f19 SHA1 7e37631d35fbefd8bc1825a85a01d15644714fc4 SHA256 17bc848378b4eee38e064b92a21b9e7b93cddcb6f620b5a0a9ad8ad3d8cd85bc
-MISC metadata.xml 628 RMD160 a27ff3d06d5c3ef3ea82a587411bc6df8495d75f SHA1 72e937e264bd147756d7a365f969c7ffc70246ca SHA256 f5e67b1b6eee1304cb3e2e54b4671894dffa071a6a704d25ab78d450b4888b53
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-VTK-cg-path.patch b/sci-visualization/paraview/files/paraview-3.6.1-VTK-cg-path.patch
deleted file mode 100644
index 352b57317..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-VTK-cg-path.patch
+++ /dev/null
@@ -1,34 +0,0 @@
---- VTK/CMake/FindCg.cmake.orig 2005-10-05 04:25:51.000000000 +1300
-+++ VTK/CMake/FindCg.cmake 2009-12-15 21:54:09.000000000 +1300
-@@ -82,6 +82,7 @@
- FIND_PROGRAM( CG_COMPILER cgc
- /usr/bin
- /usr/local/bin
-+ /opt/nvidia-cg-toolkit/bin
- DOC "The Cg Compiler"
- )
- GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH)
-@@ -89,6 +90,7 @@
- FIND_PATH( CG_INCLUDE_PATH Cg/cg.h
- /usr/include
- /usr/local/include
-+ /opt/nvidia-cg-toolkit/include
- ${CG_COMPILER_SUPER_DIR}/include
- DOC "The directory where Cg/cg.h resides"
- )
-@@ -98,6 +100,7 @@
- /usr/lib
- /usr/local/lib64
- /usr/local/lib
-+ /opt/nvidia-cg-toolkit/lib
- ${CG_COMPILER_SUPER_DIR}/lib64
- ${CG_COMPILER_SUPER_DIR}/lib
- DOC "The Cg runtime library"
-@@ -108,6 +111,7 @@
- /usr/lib
- /usr/local/lib64
- /usr/local/lib
-+ /opt/nvidia-cg-toolkit/lib
- ${CG_COMPILER_SUPER_DIR}/lib64
- ${CG_COMPILER_SUPER_DIR}/lib
- DOC "The Cg runtime library"
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-assistant.patch b/sci-visualization/paraview/files/paraview-3.6.1-assistant.patch
deleted file mode 100644
index a48c9b53a..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-assistant.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff -Naur ParaView3/Applications/OverView/Core/MainWindow.cxx ParaView3.new/Applications/OverView/Core/MainWindow.cxx
---- ParaView3/Applications/OverView/Core/MainWindow.cxx 2009-07-20 15:36:12.000000000 -0400
-+++ ParaView3.new/Applications/OverView/Core/MainWindow.cxx 2009-07-22 23:42:53.000000000 -0400
-@@ -933,7 +933,7 @@
- QString assistantExe;
- QString profileFile;
-
-- const char* assistantName = "assistant";
-+ const char* assistantName = "paraview-assistant";
- #if defined(Q_WS_WIN)
- const char* binDir = "\\";
- const char* binDir1 = "\\..\\";
-diff -Naur ParaView3/Qt/Components/pqClientMainWindow.cxx ParaView3.new/Qt/Components/pqClientMainWindow.cxx
---- ParaView3/Qt/Components/pqClientMainWindow.cxx 2009-07-20 15:37:39.000000000 -0400
-+++ ParaView3.new/Qt/Components/pqClientMainWindow.cxx 2009-07-22 23:44:37.000000000 -0400
-@@ -989,7 +989,7 @@
- QString assistantExe;
- QString profileFile;
-
-- const char* assistantName = "assistant";
-+ const char* assistantName = "paraview-assistant";
- #if defined(Q_WS_WIN)
- const char* extString = ".exe";
- const char* binDir = "\\";
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-hdf-1.8.3.patch b/sci-visualization/paraview/files/paraview-3.6.1-hdf-1.8.3.patch
deleted file mode 100644
index 0b966a724..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-hdf-1.8.3.patch
+++ /dev/null
@@ -1,71 +0,0 @@
-diff -Naur ParaView3/Utilities/Xdmf2/libsrc/XdmfH5Driver.cxx ParaView3.new/Utilities/Xdmf2/libsrc/XdmfH5Driver.cxx
---- ParaView3/Utilities/Xdmf2/libsrc/XdmfH5Driver.cxx 2009-07-20 15:39:10.000000000 -0400
-+++ ParaView3.new/Utilities/Xdmf2/libsrc/XdmfH5Driver.cxx 2009-07-22 16:05:22.000000000 -0400
-@@ -132,9 +132,15 @@
- static herr_t H5FD_dsm_flush(H5FD_t *_file);
- #endif
- static int H5FD_dsm_cmp(const H5FD_t *_f1, const H5FD_t *_f2);
-+#ifdef H5_USE_16_API
-+static haddr_t H5FD_dsm_get_eoa(const H5FD_t *_file, H5FD_mem_t);
-+static herr_t H5FD_dsm_set_eoa(H5FD_t *_file, H5FD_mem_t, haddr_t addr);
-+static haddr_t H5FD_dsm_get_eof(const H5FD_t *_file);
-+#else
- static haddr_t H5FD_dsm_get_eoa(H5FD_t *_file);
- static herr_t H5FD_dsm_set_eoa(H5FD_t *_file, haddr_t addr);
- static haddr_t H5FD_dsm_get_eof(H5FD_t *_file);
-+#endif
- static herr_t H5FD_dsm_read(H5FD_t *_file, H5FD_mem_t type, hid_t fapl_id, haddr_t addr,
- DSM_HSIZE_T size, void *buf);
- static herr_t H5FD_dsm_write(H5FD_t *_file, H5FD_mem_t type, hid_t fapl_id, haddr_t addr,
-@@ -159,6 +165,7 @@
- H5FD_dsm_close, /*close */
- H5FD_dsm_cmp, /*cmp */
- NULL, /*query */
-+ NULL, /*type map */
- NULL, /*alloc */
- NULL, /*free */
- H5FD_dsm_get_eoa, /*get_eoa */
-@@ -168,6 +175,7 @@
- H5FD_dsm_read, /*read */
- H5FD_dsm_write, /*write */
- NULL, /*flush */
-+ NULL, /*truncate */
- NULL, /*lock */
- NULL, /*unlock */
- H5FD_FLMAP_SINGLE /*fl_map */
-@@ -594,7 +602,11 @@
- *-------------------------------------------------------------------------
- */
- static haddr_t
-+#ifdef H5_USE_16_API
-+H5FD_dsm_get_eoa(const H5FD_t *_file, H5FD_mem_t)
-+#else
- H5FD_dsm_get_eoa(H5FD_t *_file)
-+#endif
- {
- H5FD_dsm_t *file = (H5FD_dsm_t*)_file;
-
-@@ -622,7 +634,11 @@
- *-------------------------------------------------------------------------
- */
- static herr_t
-+#ifdef H5_USE_16_API
-+H5FD_dsm_set_eoa(H5FD_t *_file, H5FD_mem_t, haddr_t addr)
-+#else
- H5FD_dsm_set_eoa(H5FD_t *_file, haddr_t addr)
-+#endif
- {
- H5FD_dsm_t *file = (H5FD_dsm_t*)_file;
-
-@@ -663,7 +679,11 @@
- *-------------------------------------------------------------------------
- */
- static haddr_t
-+#ifdef H5_USE_16_API
-+H5FD_dsm_get_eof(const H5FD_t *_file)
-+#else
- H5FD_dsm_get_eof(H5FD_t *_file)
-+#endif
- {
- H5FD_dsm_t *file = (H5FD_dsm_t*)_file;
-
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-install-fix.patch b/sci-visualization/paraview/files/paraview-3.6.1-install-fix.patch
deleted file mode 100644
index f61627138..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-install-fix.patch
+++ /dev/null
@@ -1,127 +0,0 @@
-diff -ru ParaView3/Applications/Client/CMakeLists.txt ParaView3.new/Applications/Client/CMakeLists.txt
---- ParaView3/Applications/Client/CMakeLists.txt 2009-07-20 15:36:01.000000000 -0400
-+++ ParaView3.new/Applications/Client/CMakeLists.txt 2009-07-22 18:35:55.000000000 -0400
-@@ -499,17 +499,17 @@
-
- # Install system libraries on Linux (will not work on any other Unix
- # yet)
--FOREACH(fmpglib avcodec avformat avutil)
-- IF(FFMPEG_${fmpglib}_LIBRARY)
-- GET_FILENAME_COMPONENT(FFMPEG_LIB_DIR_tmp ${FFMPEG_${fmpglib}_LIBRARY} PATH)
-- GET_FILENAME_COMPONENT(FFMPEG_LIB_NAME_tmp ${FFMPEG_${fmpglib}_LIBRARY} NAME)
-- FILE(GLOB FFMPEG_LIB_LIST RELATIVE ${FFMPEG_LIB_DIR_tmp} "${FFMPEG_${fmpglib}_LIBRARY}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${FFMPEG_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${FFMPEG_LIB_DIR_tmp}
-- COMMAND tar c ${FFMPEG_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-+#FOREACH(fmpglib avcodec avformat avutil)
-+# IF(FFMPEG_${fmpglib}_LIBRARY)
-+# GET_FILENAME_COMPONENT(FFMPEG_LIB_DIR_tmp ${FFMPEG_${fmpglib}_LIBRARY} PATH)
-+# GET_FILENAME_COMPONENT(FFMPEG_LIB_NAME_tmp ${FFMPEG_${fmpglib}_LIBRARY} NAME)
-+# FILE(GLOB FFMPEG_LIB_LIST RELATIVE ${FFMPEG_LIB_DIR_tmp} "${FFMPEG_${fmpglib}_LIBRARY}*")
-+# INSTALL(CODE "
-+#MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${FFMPEG_LIB_NAME_tmp}\")
-+#EXECUTE_PROCESS (WORKING_DIRECTORY ${FFMPEG_LIB_DIR_tmp}
-+# COMMAND tar c ${FFMPEG_LIB_LIST}
-+# COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+# " COMPONENT Runtime)
- #INSTALL(FILES ${FFMPEG_${fmpglib}_LIBRARY} DESTINATION ${PV_INSTALL_LIB_DIR})
-
- ENDIF(FFMPEG_${fmpglib}_LIBRARY)
-@@ -527,26 +527,26 @@
- SET (QTLIBLIST ${QTLIBLIST} QTOPENGL)
- ENDIF (VTK_USE_QVTK_QTOPENGL)
-
--IF(NOT Q_WS_MAC)
-- FOREACH(qtlib ${QTLIBLIST})
-- IF (NOT WIN32)
-- #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-- GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-- GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-- FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-- COMMAND tar c ${QT_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-- ELSE (NOT WIN32)
-- GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-- INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-- ENDIF (NOT WIN32)
--
-- ENDFOREACH(qtlib)
--ENDIF(NOT Q_WS_MAC)
-+#IF(NOT Q_WS_MAC)
-+# FOREACH(qtlib ${QTLIBLIST})
-+# IF (NOT WIN32)
-+# #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-+# GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-+# GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-+# FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-+# INSTALL(CODE "
-+#MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
-+#EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-+# COMMAND tar c ${QT_LIB_LIST}
-+# COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+# " COMPONENT Runtime)
-+# ELSE (NOT WIN32)
-+# GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-+# INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-+# ENDIF (NOT WIN32)
-+#
-+# ENDFOREACH(qtlib)
-+#ENDIF(NOT Q_WS_MAC)
-
- # Hard-coded install rules for anything left to install. These should
- # probably go to a local cmake file. Change to match the build system's
-diff -ru ParaView3/Applications/StreamingParaView/CMakeLists.txt ParaView3.new/Applications/StreamingParaView/CMakeLists.txt
---- ParaView3/Applications/StreamingParaView/CMakeLists.txt 2009-07-20 15:36:15.000000000 -0400
-+++ ParaView3.new/Applications/StreamingParaView/CMakeLists.txt 2009-07-22 18:36:49.000000000 -0400
-@@ -198,26 +198,26 @@
- SET (QTLIBLIST ${QTLIBLIST} QTASSISTANT)
- ENDIF (WIN32)
-
--IF(NOT Q_WS_MAC)
-- FOREACH(qtlib ${QTLIBLIST})
-- IF (NOT WIN32)
-+#IF(NOT Q_WS_MAC)
-+# FOREACH(qtlib ${QTLIBLIST})
-+# IF (NOT WIN32)
- #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-- GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-- GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-- FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-- COMMAND tar c ${QT_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-- ELSE (NOT WIN32)
-- GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-- INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-- ENDIF (NOT WIN32)
-+ # GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-+ #GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-+ # FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-+ # INSTALL(CODE "
-+ #MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
-+ #EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-+ # COMMAND tar c ${QT_LIB_LIST}
-+ # COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+ # " COMPONENT Runtime)
-+ # ELSE (NOT WIN32)
-+ #GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-+ #INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-+ # ENDIF (NOT WIN32)
-
-- ENDFOREACH(qtlib)
--ENDIF(NOT Q_WS_MAC)
-+ # ENDFOREACH(qtlib)
-+ #ENDIF(NOT Q_WS_MAC)
-
- # Hard-coded install rules for anything left to install. These should
- # probably go to a local cmake file. Change to match the build system's
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-no-doc-finder.patch b/sci-visualization/paraview/files/paraview-3.6.1-no-doc-finder.patch
deleted file mode 100644
index a98d00419..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-no-doc-finder.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-diff -Naur ParaView3.old/Applications/Client/CMakeLists.txt ParaView3/Applications/Client/CMakeLists.txt
---- ParaView3.old/Applications/Client/CMakeLists.txt 2009-07-20 15:36:01.000000000 -0400
-+++ ParaView3/Applications/Client/CMakeLists.txt 2009-07-28 09:28:12.000000000 -0400
-@@ -128,10 +128,10 @@
- "${CMAKE_CURRENT_BINARY_DIR}/CMake/tmp/pqClientDocFinder.txt"
- @ONLY
- IMMEDIATE)
-- INSTALL(
-- FILES "${CMAKE_CURRENT_BINARY_DIR}/CMake/tmp/pqClientDocFinder.txt"
-- DESTINATION ${PV_INSTALL_BIN_DIR}
-- COMPONENT Runtime)
-+ # INSTALL(
-+ # FILES "${CMAKE_CURRENT_BINARY_DIR}/CMake/tmp/pqClientDocFinder.txt"
-+ # DESTINATION ${PV_INSTALL_BIN_DIR}
-+ # COMPONENT Runtime)
- ENDIF(NOT PV_INSTALL_NO_RUNTIME)
-
- IF(BUILD_TESTING)
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-pointsprite-disable.patch b/sci-visualization/paraview/files/paraview-3.6.1-pointsprite-disable.patch
deleted file mode 100644
index 5d6cdd053..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-pointsprite-disable.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff -Naur ParaView3/Plugins/PointSprite/Examples/Rendering/Cxx/CMakeLists.txt ParaView3.new/Plugins/PointSprite/Examples/Rendering/Cxx/CMakeLists.txt
---- ParaView3/Plugins/PointSprite/Examples/Rendering/Cxx/CMakeLists.txt 2009-07-20 15:37:07.000000000 -0400
-+++ ParaView3.new/Plugins/PointSprite/Examples/Rendering/Cxx/CMakeLists.txt 2009-07-21 11:42:56.000000000 -0400
-@@ -5,6 +5,6 @@
-
- target_link_libraries(${exe} CSCS_PointSprite_Rendering vtkIO)
-
--install(TARGETS ${exe}
-- RUNTIME DESTINATION ${PROJECT_BINARY_DIR}
--)
-+#install(TARGETS ${exe}
-+# RUNTIME DESTINATION ${PROJECT_BINARY_DIR}
-+#)
diff --git a/sci-visualization/paraview/files/paraview-3.6.1-qt.patch b/sci-visualization/paraview/files/paraview-3.6.1-qt.patch
deleted file mode 100644
index bca40bc4a..000000000
--- a/sci-visualization/paraview/files/paraview-3.6.1-qt.patch
+++ /dev/null
@@ -1,147 +0,0 @@
-diff -Naur ParaView3/Applications/Client/CMakeLists.txt ParaView3.new/Applications/Client/CMakeLists.txt
---- ParaView3/Applications/Client/CMakeLists.txt 2009-07-20 15:36:01.000000000 -0400
-+++ ParaView3.new/Applications/Client/CMakeLists.txt 2009-07-22 22:38:09.000000000 -0400
-@@ -499,54 +499,54 @@
-
- # Install system libraries on Linux (will not work on any other Unix
- # yet)
--FOREACH(fmpglib avcodec avformat avutil)
-- IF(FFMPEG_${fmpglib}_LIBRARY)
-- GET_FILENAME_COMPONENT(FFMPEG_LIB_DIR_tmp ${FFMPEG_${fmpglib}_LIBRARY} PATH)
-- GET_FILENAME_COMPONENT(FFMPEG_LIB_NAME_tmp ${FFMPEG_${fmpglib}_LIBRARY} NAME)
-- FILE(GLOB FFMPEG_LIB_LIST RELATIVE ${FFMPEG_LIB_DIR_tmp} "${FFMPEG_${fmpglib}_LIBRARY}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${FFMPEG_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${FFMPEG_LIB_DIR_tmp}
-- COMMAND tar c ${FFMPEG_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-- #INSTALL(FILES ${FFMPEG_${fmpglib}_LIBRARY} DESTINATION ${PV_INSTALL_LIB_DIR})
-+#FOREACH(fmpglib avcodec avformat avutil)
-+# IF(FFMPEG_${fmpglib}_LIBRARY)
-+# GET_FILENAME_COMPONENT(FFMPEG_LIB_DIR_tmp ${FFMPEG_${fmpglib}_LIBRARY} PATH)
-+# GET_FILENAME_COMPONENT(FFMPEG_LIB_NAME_tmp ${FFMPEG_${fmpglib}_LIBRARY} NAME)
-+# FILE(GLOB FFMPEG_LIB_LIST RELATIVE ${FFMPEG_LIB_DIR_tmp} "${FFMPEG_${fmpglib}_LIBRARY}*")
-+# INSTALL(CODE "
-+#MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${FFMPEG_LIB_NAME_tmp}\")
-+#EXECUTE_PROCESS (WORKING_DIRECTORY ${FFMPEG_LIB_DIR_tmp}
-+# COMMAND tar c ${FFMPEG_LIB_LIST}
-+# COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+# " COMPONENT Runtime)
-+# #INSTALL(FILES ${FFMPEG_${fmpglib}_LIBRARY} DESTINATION ${PV_INSTALL_LIB_DIR})
-
-- ENDIF(FFMPEG_${fmpglib}_LIBRARY)
--ENDFOREACH(fmpglib)
-+# ENDIF(FFMPEG_${fmpglib}_LIBRARY)
-+#ENDFOREACH(fmpglib)
-
--SET (QTLIBLIST QTCORE QTGUI QTNETWORK QTXML QTTEST QTSQL)
-+#SET (QTLIBLIST QTCORE QTGUI QTNETWORK QTXML QTTEST QTSQL)
- # the variable and library names are not the same
--IF (WIN32)
-- SET (QTLIBLIST ${QTLIBLIST} QTASSISTANTCLIENT)
--ELSE (WIN32)
-- SET (QTLIBLIST ${QTLIBLIST} QTASSISTANT)
--ENDIF (WIN32)
-+#IF (WIN32)
-+# SET (QTLIBLIST ${QTLIBLIST} QTASSISTANTCLIENT)
-+#ELSE (WIN32)
-+# SET (QTLIBLIST ${QTLIBLIST} QTASSISTANT)
-+#ENDIF (WIN32)
-
- IF (VTK_USE_QVTK_QTOPENGL)
- SET (QTLIBLIST ${QTLIBLIST} QTOPENGL)
- ENDIF (VTK_USE_QVTK_QTOPENGL)
-
--IF(NOT Q_WS_MAC)
-- FOREACH(qtlib ${QTLIBLIST})
-- IF (NOT WIN32)
-- #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-- GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-- GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-- FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-- COMMAND tar c ${QT_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-- ELSE (NOT WIN32)
-- GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-- INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-- ENDIF (NOT WIN32)
-+#IF(NOT Q_WS_MAC)
-+# FOREACH(qtlib ${QTLIBLIST})
-+# IF (NOT WIN32)
-+# #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-+# GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-+# GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-+# FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-+# INSTALL(CODE "
-+#MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
-+#EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-+# COMMAND tar c ${QT_LIB_LIST}
-+# COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+# " COMPONENT Runtime)
-+# ELSE (NOT WIN32)
-+# GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-+# INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-+# ENDIF (NOT WIN32)
-
-- ENDFOREACH(qtlib)
--ENDIF(NOT Q_WS_MAC)
-+# ENDFOREACH(qtlib)
-+#ENDIF(NOT Q_WS_MAC)
-
- # Hard-coded install rules for anything left to install. These should
- # probably go to a local cmake file. Change to match the build system's
-diff -Naur ParaView3/Applications/StreamingParaView/CMakeLists.txt ParaView3.new/Applications/StreamingParaView/CMakeLists.txt
---- ParaView3/Applications/StreamingParaView/CMakeLists.txt 2009-07-20 15:36:15.000000000 -0400
-+++ ParaView3.new/Applications/StreamingParaView/CMakeLists.txt 2009-07-22 22:39:14.000000000 -0400
-@@ -198,26 +198,26 @@
- SET (QTLIBLIST ${QTLIBLIST} QTASSISTANT)
- ENDIF (WIN32)
-
--IF(NOT Q_WS_MAC)
-- FOREACH(qtlib ${QTLIBLIST})
-- IF (NOT WIN32)
-- #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-- GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-- GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-- FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-- INSTALL(CODE "
--MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
--EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-- COMMAND tar c ${QT_LIB_LIST}
-- COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-- " COMPONENT Runtime)
-- ELSE (NOT WIN32)
-- GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-- INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-- ENDIF (NOT WIN32)
--
-- ENDFOREACH(qtlib)
--ENDIF(NOT Q_WS_MAC)
-+#IF(NOT Q_WS_MAC)
-+# FOREACH(qtlib ${QTLIBLIST})
-+# IF (NOT WIN32)
-+# #INSTALL(FILES ${QT_${qtlib}_LIBRARY_RELEASE} DESTINATION ${PV_INSTALL_LIB_DIR})
-+# GET_FILENAME_COMPONENT(QT_LIB_DIR_tmp ${QT_${qtlib}_LIBRARY_RELEASE} PATH)
-+# GET_FILENAME_COMPONENT(QT_LIB_NAME_tmp ${QT_${qtlib}_LIBRARY_RELEASE} NAME)
-+# FILE(GLOB QT_LIB_LIST RELATIVE ${QT_LIB_DIR_tmp} "${QT_${qtlib}_LIBRARY_RELEASE}*")
-+# INSTALL(CODE "
-+#MESSAGE(STATUS \"Installing \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR}/${QT_LIB_NAME_tmp}\")
-+#EXECUTE_PROCESS (WORKING_DIRECTORY ${QT_LIB_DIR_tmp}
-+# COMMAND tar c ${QT_LIB_LIST}
-+# COMMAND tar -xC \${CMAKE_INSTALL_PREFIX}/${PV_INSTALL_LIB_DIR})
-+# " COMPONENT Runtime)
-+# ELSE (NOT WIN32)
-+# GET_FILENAME_COMPONENT(QT_DLL_PATH_tmp ${QT_QMAKE_EXECUTABLE} PATH)
-+# INSTALL(FILES ${QT_DLL_PATH_tmp}/${qtlib}4.dll DESTINATION ${PV_INSTALL_BIN_DIR} COMPONENT Runtime)
-+# ENDIF (NOT WIN32)
-+#
-+# ENDFOREACH(qtlib)
-+#ENDIF(NOT Q_WS_MAC)
-
- # Hard-coded install rules for anything left to install. These should
- # probably go to a local cmake file. Change to match the build system's
diff --git a/sci-visualization/paraview/metadata.xml b/sci-visualization/paraview/metadata.xml
deleted file mode 100644
index af944324b..000000000
--- a/sci-visualization/paraview/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci</herd>
- <maintainer>
- <email>markusle@gentoo.org</email>
- <name>Markus Dittrich</name>
- </maintainer>
- <use>
- <flag name='plugins'>Build and install additional plugins</flag>
- <flag name='cg'>Use nvidia's cg shaders in the shipped vtk</flag>
- <flag name='streaming'>Build and install the StreamingParaView application and its associated plugin</flag>
- <flag name='overview'>Build and install the experimental OverView application and its complusory plugins</flag>
- </use>
-</pkgmetadata>
diff --git a/sci-visualization/paraview/paraview-3.6.1-r2.ebuild b/sci-visualization/paraview/paraview-3.6.1-r2.ebuild
deleted file mode 100644
index 94381bb82..000000000
--- a/sci-visualization/paraview/paraview-3.6.1-r2.ebuild
+++ /dev/null
@@ -1,276 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-visualization/paraview/paraview-3.6.1-r1.ebuild,v 1.4 2009/11/24 04:05:41 markusle Exp $
-
-EAPI="2"
-
-inherit distutils eutils flag-o-matic toolchain-funcs versionator python qt4 cmake-utils
-
-MAIN_PV=$(get_major_version)
-MAJOR_PV=$(get_version_component_range 1-2)
-
-DESCRIPTION="ParaView is a powerful scientific data visualization application"
-HOMEPAGE="http://www.paraview.org"
-SRC_URI="mirror://gentoo/${P}.tar.gz
- mirror://gentoo/${P}-openfoam-gpl-r120.patch.bz2
- mirror://gentoo/${P}-openfoam-r120.patch.bz2"
-
-LICENSE="paraview GPL-2"
-KEYWORDS="~x86 ~amd64"
-SLOT="0"
-IUSE="mpi python doc examples qt4 plugins overview streaming mysql postgres odbc cg"
-# the database backends are exposed in some of the plugins.
-# wether gl2ps and cg are exposed in paraview is a good question.
-RDEPEND="sci-libs/hdf5
- mpi? ( || (
- sys-cluster/openmpi
- sys-cluster/mpich2[cxx] ) )
- python? ( >=dev-lang/python-2.0 )
- qt4? ( x11-libs/qt-gui:4
- x11-libs/qt-qt3support:4
- x11-libs/qt-assistant:4
- x11-libs/qt-opengl:4 )
- overview? (
- mysql? ( virtual/mysql )
- postgres? ( virtual/postgresql-base )
- odbc? ( dev-db/unixODBC )
- )
- cg? ( media-gfx/nvidia-cg-toolkit )
- dev-libs/libxml2
- media-libs/libpng
- media-libs/jpeg
- media-libs/tiff
- media-video/ffmpeg
- dev-libs/expat
- sys-libs/zlib
- media-libs/freetype
- >=app-admin/eselect-opengl-1.0.6-r1
- virtual/opengl
- sci-libs/netcdf
- x11-libs/libXmu"
-
-DEPEND="${RDEPEND}
- doc? ( app-doc/doxygen )
- overview? ( >=dev-libs/boost-1.37 )"
-
-PVLIBDIR="$(get_libdir)/${PN}-${MAJOR_PV}"
-S="${WORKDIR}"/ParaView${MAIN_PV}
-
-pkg_setup() {
- # overview needs qt4 so if overview is enabled and qt4 isn't we abort
- if( ( use overview ) && ! (use qt4) ); then
- einfo "overview requires qt4 to build"
- einfo "you currently have qt4 disabled please enable it"
- einfo "if you really want overview"
- die
- fi
-
- if( !( use overview ) && ( ( use mysql ) || ( use postgres ) || ( use odbc ) ) ); then
- einfo "The database backends for mysql, postgresql and odbc"
- einfo "are only useful with overview as far as I can tell."
- einfo "Therefore these backend are currently disabled."
- einfo "If you have a use for them inside paraview let us know."
- fi
-}
-
-src_prepare() {
- epatch "${FILESDIR}/${P}-qt.patch"
- epatch "${FILESDIR}/${P}-pointsprite-disable.patch"
- epatch "${FILESDIR}/${P}-assistant.patch"
- epatch "${DISTDIR}/${P}-openfoam-r120.patch.bz2"
- epatch "${DISTDIR}/${P}-openfoam-gpl-r120.patch.bz2"
- epatch "${FILESDIR}/${P}-no-doc-finder.patch"
- epatch "${FILESDIR}/${P}-VTK-cg-path.patch"
-
- has_version '>=sci-libs/hdf5-1.8.0' epatch "${FILESDIR}"/${P}-hdf-1.8.3.patch
-
- # fix GL issues
- sed -e "s:DEPTH_STENCIL_EXT:DEPTH_COMPONENT24:" \
- -i VTK/Rendering/vtkOpenGLRenderWindow.cxx \
- || die "Failed to fix GL issues."
-
- # fix plugin install directory
- sed -e "s:\${PV_INSTALL_BIN_DIR}/plugins:/usr/${PVLIBDIR}/plugins:" \
- -i CMake/ParaViewPlugins.cmake \
- || die "Failed to fix plugin install directories"
-}
-
-src_configure(){
- # we do not depend on an external sci-libs/proj - doing so is incompatible
- # with building shared libraries. But we can use gsl or pthreads.
- # Building vtk with the boost library is only required if you want to build OverView and its plugins.
- local mycmakeargs+=(
- "-DPV_INSTALL_LIB_DIR:PATH=${PVLIBDIR}"
- "-DPARAVIEW_USE_SYSTEM_HDF5:BOOL=ON"
- "-DBUILD_SHARED_LIBS:BOOL=ON"
- "-DBUILD_TESTING:BOOL=OFF"
- "-DCMAKE_SKIP_RPATH:BOOL=YES"
- "-DCMAKE_INSTALL_PREFIX:PATH=/usr"
- "-DCMAKE_VERBOSE_MAKEFILE:BOOL=OFF"
- "-DCMAKE_USE_PTHREADS:BOOL=ON"
- "-DCMAKE_COLOR_MAKEFILE:BOOL=TRUE"
- "-DEXPAT_INCLUDE_DIR:PATH=/usr/include"
- "-DEXPAT_LIBRARY=/usr/$(get_libdir)/libexpat.so"
- "-DOPENGL_gl_LIBRARY=/usr/$(get_libdir)/libGL.so"
- "-DOPENGL_glu_LIBRARY=/usr/$(get_libdir)/libGLU.so"
- "-DVTK_USE_SYSTEM_FREETYPE:BOOL=ON"
- "-DVTK_USE_SYSTEM_JPEG:BOOL=ON"
- "-DVTK_USE_SYSTEM_PNG:BOOL=ON"
- "-DVTK_USE_SYSTEM_TIFF:BOOL=ON"
- "-DVTK_USE_SYSTEM_ZLIB:BOOL=ON"
- "-DVTK_USE_SYSTEM_EXPAT:BOOL=ON"
- "-DVTK_USE_RPATH:BOOL=OFF"
- "-DVTK_USE_SYSTEM_LIBXML2:BOOL=ON"
- "-DVTK_USE_OFFSCREEN=TRUE"
- "-DVTK_USE_GEOVIS:BOOL=ON"
- "-DVTK_USE_GL2PS:BOOL=ON"
- "-DVTK_USE_GLSL_SHADERS:BOOL=ON"
- "-DVTK_USE_GUISUPPORT:BOOL=ON"
- "-DVTK_USE_INFOVIS:BOOL=ON"
- "-DVTK_USE_METAIO:BOOL=ON"
- "-DVTK_USE_VIEWS:BOOL=ON"
- $(cmake-utils_use cg VTK_USE_CG_SHADERS)
- $(cmake-utils_use streaming PARAVIEW_BUILD_StreamingParaView)
- $(cmake-utils_use mpi PARAVIEW_USE_MPI)
- $(cmake-utils_use python PARAVIEW_ENABLE_PYTHON)
- $(cmake-utils_use qt4 PARAVIEW_BUILD_QT_GUI)
- $(cmake-utils_use_build doc DOCUMENTATION)
- $(cmake-utils_use_build examples EXAMPLES)
- )
-
- # Building OverView requires boost and some plugins
- # VTK_USE_N_WAY_ARRAYS is needed for the Array and TableToSparseArrayPanel plugins,
- # it also probably enables some functionality in the Infovis plugin.
- # Plugins in the first list are both required and enabled by OverView
- if use overview; then
- mycmakeargs+=(
- "-DVTK_USE_BOOST:BOOL=ON"
- "-DVTK_USE_N_WAY_ARRAYS:BOOL=ON"
- "-DPARAVIEW_BUILD_OverView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientGraphView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientGraphViewFrame:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientRecordView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientTableView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientTreeView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_Infovis:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_SQLDatabaseGraphSourcePanel:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_SQLDatabaseTableSourcePanel:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_TableToGraphPanel:BOOL=ON"
- $(cmake-utils_use odbc VTK_USE_ODBC)
- $(cmake-utils_use mysql VTK_USE_MYSQL)
- $(cmake-utils_use mysql XDMF_USE_MYSQL)
- $(cmake-utils_use postgres VTK_USE_POSTGRES)
- )
- # The following plugins need overview to build but are not needed to build OverView.
- use plugins && mycmakeargs+=(
- "-DPARAVIEW_BUILD_PLUGIN_Array:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientGeoView2D:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientGeoView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_SplitTableFieldPanel:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ThresholdTablePanel:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_StatisticsToolbar:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_ClientHierarchyView:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_CommonToolbar:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_TableToSparseArrayPanel:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_GraphLayoutFilterPanel:BOOL=ON"
- )
- fi
-
- # FIXME: compiling against ffmpeg is currently broken
- mycmakeargs+=("-DVTK_USE_FFMPEG_ENCODER:BOOL=OFF")
-
- # May be if someone is interested we should test this
- # source include a stub of visit but it tries to find an installed copy of visit.
- # It may just need to be pointed there manually
- mycmakeargs+=("-DPARAVIEW_BUILD_PLUGIN_VisItReaderPlugin:BOOL=OFF")
-
- # PointSprite: Does it require mpi (seems to build without)? say it really should need cmake>2.7 .
- if use plugins; then
- mycmakeargs+=(
- "-DPARAVIEW_BUILD_PLUGIN_CosmoFilters:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_Moments,:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_PointSprite:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_Prism:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_SLACTools:BOOL=ON"
- "-DPARAVIEW_BUILD_PLUGIN_netCDFReaders:BOOL=ON"
- $(cmake-utils_use examples PointSpritePlugin_BUILD_EXAMPLES)
- $(cmake-utils_use python PARAVIEW_BUILD_PLUGIN_pvblot)
- )
- # note about -DPARAVIEW_BUILD_PLUGIN_Streaming
- # it is enabled if the streaming application is built - off otherwise.
- fi
-
- # Extra options to build the QT4 client
- use qt4 && mycmakeargs+=(
- "-DVTK_INSTALL_QT_DIR=/${PVLIBDIR}/plugins/designer"
- "-DVTK_USE_QT:BOOL=ON"
- "-DVTK_USE_QVTK_QTOPENGL:BOOL=ON"
- )
-
- # we also need to append -DH5Tget_array_dims_vers=1 to our CFLAGS
- append-flags -DH5_USE_16_API
-
- cmake-utils_src_configure
- # if we want to built overview configure has to be called twice
- # otherwise some variables are not propagated properly
- use overview && cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- # rename the assistant wrapper
- if use qt4; then
- mv "${D}"/usr/bin/assistant "${D}"/usr/bin/paraview-assistant \
- || die "Failed to rename assistant wrapper"
- chmod 0755 "${D}/usr/${PVLIBDIR}/assistant-real" \
- || die "Failed to change permissions on assistant wrapper"
- newicon Applications/Client/pvIcon.svg "${PN}".svg
- make_desktop_entry paraview Paraview "${PN}".svg
- fi
-
- # There is no install target for OverView, so we have a manual install
- if use overview; then
- exeinto /usr/"${PVLIBDIR}"
- newexe "${CMAKE_BUILD_DIR}"/bin/OverView OverView-real
- dolib.so "${CMAKE_BUILD_DIR}"/bin/libOverViewCore.so
- mkdir "${D}/usr/${PVLIBDIR}"/OverView-startup
- cd "${CMAKE_BUILD_DIR}"/bin/OverView-startup
- insinto "/usr/${PVLIBDIR}"/OverView-startup
- insopts -m0755
- doins lib*.so
- dosym /usr/"${PVLIBDIR}"/OverView-real /usr/bin/OverView
- newicon "${S}"/Applications/OverView/Icon.png overview.png
- make_desktop_entry OverView "OverView" overview.png
- fi
-
- # set up the environment
- echo "LDPATH=/usr/${PVLIBDIR}" >> "${T}"/40${PN}
- doenvd "${T}"/40${PN}
-
- # move and remove some of the files that should not be
- # in /usr/bin
- dohtml "${D}/usr/bin/about.html" && rm -f "${D}/usr/bin/about.html" \
- || die "Failed to move about.html into doc dir"
-
- # this binary does not work and probably should not be installed
- rm -f "${D}/usr/bin/vtkSMExtractDocumentation" \
- || die "Failed to remove vtkSMExtractDocumentation"
-
- # rename /usr/bin/lproj to /usr/bin/lproj_paraview to avoid
- # a file collision with vtk which installs the same file
- mv "${D}/usr/bin/lproj" "${D}/usr/bin/lproj_paraview" \
- || die "Failed to rename /usr/bin/lproj"
-}
-
-pkg_postinst() {
- # with Qt4.5 there seem to be issues reading data files
- # under certain locales. Setting LC_ALL=C should fix these.
- echo
- elog "If you experience data corruption during parsing of"
- elog "data files with paraview please try setting your"
- elog "locale to LC_ALL=C."
- elog "The binary /usr/bin/lproj has been renamed to"
- elog "/usr/bin/lproj_paraview to avoid a file collision"
- elog "with vtk."
- echo
-}