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authorChristoph Junghans <ottxor@gentoo.org>2015-01-15 08:56:39 -0700
committerChristoph Junghans <ottxor@gentoo.org>2015-01-15 08:56:39 -0700
commit1ed8090c989cf72046e206e4daaf02222c4029a5 (patch)
tree5ceaa522b0e3043b43a64dc6efba9e1d492166a1
parentMerge branch 'master' of ssh://github.com/gentoo-science/sci (diff)
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Revert "sci-biology/bcftools: new package: compiles against bundled sci-libs/htslib-1.1 but does not install it"
Missing license. This reverts commit 46558c3fddec519dc1b598612c6aadd022dc2aab.
-rw-r--r--sci-biology/bcftools/ChangeLog10
-rw-r--r--sci-biology/bcftools/Manifest1
-rw-r--r--sci-biology/bcftools/bcftools-1.1.ebuild26
-rw-r--r--sci-biology/bcftools/metadata.xml9
4 files changed, 0 insertions, 46 deletions
diff --git a/sci-biology/bcftools/ChangeLog b/sci-biology/bcftools/ChangeLog
deleted file mode 100644
index 4e0a781f2..000000000
--- a/sci-biology/bcftools/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/bcftools
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*bcftools-1.1 (14 Jan 2015)
-
- 14 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- +bcftools-1.1.ebuild, +metadata.xml:
- sci-biology/bcftools: new package: compiles against bundled sci-
- libs/htslib-1.1 but does not install it
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
deleted file mode 100644
index d9fae6d7b..000000000
--- a/sci-biology/bcftools/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST bcftools-1.1.tar.bz2 1197465 SHA256 6d0d1610e942a1c0388f9ae8402e1508eb6451c58929ac5200c89ed572fdd65e SHA512 15892de6fd417da8efd8fc9ab20578113d3b764738bcbefc88ac309dd953e39b844d4d93fce6f19b4e63f3a8b28d2d2574041b414e71ae16842224593032f522 WHIRLPOOL 7714856354c7544eba305e01005b6a75673c6786c78d360d6ee4c279cdad3c22bdef95eb6f5f558b30e65ded8f41d79ceccf1bf2c5ae6c49c8eb146f2332c613
diff --git a/sci-biology/bcftools/bcftools-1.1.ebuild b/sci-biology/bcftools/bcftools-1.1.ebuild
deleted file mode 100644
index e3f446fe1..000000000
--- a/sci-biology/bcftools/bcftools-1.1.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org/bcftools_release_notes"
-SRC_URI="http://sourceforge.net/projects/samtools/files/samtools/1.1/bcftools-1.1.tar.bz2"
-
-LICENSE="MIT-GRL"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="sci-libs/htslib
- dev-lang/perl"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
- sed -e 's#prefix = /usr/local#prefix = /usr#' \
- -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i Makefile
-
- sed -e 's#prefix = /usr/local#prefix = /usr#' \
- -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i htslib-1.1/Makefile
-}
diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml
deleted file mode 100644
index 2bc893037..000000000
--- a/sci-biology/bcftools/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
-</pkgmetadata>