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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-15 14:02:54 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-01-15 14:02:54 +0100 |
| commit | 3839c43e8d39adf0903e21ecb7da3d92efd48646 (patch) | |
| tree | fd5ac8207eea5430dc1a2755e75b640f143bfe78 | |
| parent | added a note about additional bundled package licenses (diff) | |
| download | sci-3839c43e8d39adf0903e21ecb7da3d92efd48646.tar.gz sci-3839c43e8d39adf0903e21ecb7da3d92efd48646.tar.bz2 sci-3839c43e8d39adf0903e21ecb7da3d92efd48646.zip | |
sci-biology/edena: new package
Package-Manager: portage-2.2.7
| -rw-r--r-- | sci-biology/edena/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/edena/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/edena/edena-3.131028.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/edena/metadata.xml | 9 |
4 files changed, 54 insertions, 0 deletions
diff --git a/sci-biology/edena/ChangeLog b/sci-biology/edena/ChangeLog new file mode 100644 index 000000000..a3f0909cc --- /dev/null +++ b/sci-biology/edena/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/edena +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*edena-3.131028 (15 Jan 2015) + + 15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +edena-3.131028.ebuild, +metadata.xml: + sci-biology/edena: new package diff --git a/sci-biology/edena/Manifest b/sci-biology/edena/Manifest new file mode 100644 index 000000000..cbe128f7c --- /dev/null +++ b/sci-biology/edena/Manifest @@ -0,0 +1 @@ +DIST EdenaV3.131028.tar.gz 497784 SHA256 4037fce486c9725107b1690fbc67731713eef54e3fa53081865904c783533230 SHA512 853a5eb0afe507ba7b967075795593df147ad87c7d45be30eac6b24054ec365d7db39c9cd20bb414478a629c98c82bf0621c007c22a447949ee3f749907cae58 WHIRLPOOL 409bdb1e2f4f344198bff0af50e78afd75fffa10b4c252316a61f0c55e49bb4bdb514ed2414343056d31783e27d8ae800f7e33495cbc8f6c61ec57c5c5d974d8 diff --git a/sci-biology/edena/edena-3.131028.ebuild b/sci-biology/edena/edena-3.131028.ebuild new file mode 100644 index 000000000..0c4fe10b3 --- /dev/null +++ b/sci-biology/edena/edena-3.131028.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="De novo short read assembler" +HOMEPAGE="http://www.genomic.ch/edena.php" +SRC_URI="http://www.genomic.ch/edena/EdenaV"${PV}".tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/EdenaV"${PV}" + +src_prepare(){ + sed -e "s@^CCC.*@CCC = $(tc-getCXX)@" -e "s@^CFLAGS.*@CFLAGS = ${CFLAGS} -pthread@" -i src/Makefile || die +} + +src_compile(){ + cd src + emake +} + +src_install(){ + dobin src/edena + dodoc referenceManual.pdf +} diff --git a/sci-biology/edena/metadata.xml b/sci-biology/edena/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/edena/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |