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authorJustin Lecher <jlec@gentoo.org>2013-09-28 12:56:47 +0200
committerJustin Lecher <jlec@gentoo.org>2013-09-28 12:56:47 +0200
commit4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f (patch)
tree9bca7d148956bc47677e9381b25b0a50ba7402b6
parentsci-chemistry/coot: Adjust pc patch for latest head (diff)
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sci-biology/bowtie: Exchange common variables, fix SRC_URI
Package-Manager: portage-2.2.7
-rw-r--r--sci-biology/bowtie/ChangeLog7
-rw-r--r--sci-biology/bowtie/Manifest5
-rw-r--r--sci-biology/bowtie/bowtie-2.1.0.ebuild6
3 files changed, 11 insertions, 7 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog
new file mode 100644
index 000000000..1a636c5e1
--- /dev/null
+++ b/sci-biology/bowtie/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/bowtie
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 28 Sep 2013; Justin Lecher <jlec@gentoo.org> bowtie-2.1.0.ebuild:
+ Exchange common variables, fix SRC_URI
+
diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest
index 9321813d2..8c820d992 100644
--- a/sci-biology/bowtie/Manifest
+++ b/sci-biology/bowtie/Manifest
@@ -1,4 +1 @@
-AUX bowtie-2.1.0-buildsystem.patch 734 SHA256 8cc4d242c2b61a34503bc5f82a8baaa16c50b743751162060cefb9a3a3234587 SHA512 1d1f61e331874acb9503c4002c45b49f58145b3d7fb0e03245029e88f2783eb0ba01a6b47c1238d7c6fb82e9a3d7e103808f957151d79208b889f4a212d424f8 WHIRLPOOL e53d25c40781cb8eaffbd6990e2da6aaf44f56cf96caea7d89db17db55a48546f5308d682593a24b3a421a97d830dd21c047da9eb82138da29e1a7318319f2ab
-DIST bowtie-2.1.0-source.zip 5697131 SHA256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 SHA512 47535c0539674d81dfac16bf0f0730c766afce93fa91bef7eb4f73df2b73fb7988bc344495a909f81374a60ec79117b141442ff13a61af96fe4043dc0e47cc7c WHIRLPOOL fca873eb10c514c22e2aa46cce685050234c9d2838b7a66c6d5648425b980d93a627c187f26af16e74c6b70e8addb8c267dab5af68023b65591f8ad2616344fa
-EBUILD bowtie-2.1.0.ebuild 1133 SHA256 6a54b6e1b2ac2437fc29bc5e7813312601e176d1786ce607e03e906d54d9ffb5 SHA512 e93d3d51fafb4f39e50a8abf883fa0c6c2df9947a41acf19a69d9cf7432bb411da232545f54925781a7457dec5ca4529bc45a441f188799ec02bc04e66a88f56 WHIRLPOOL cd45fe7e3106861db6e7f0afff34392f13d4c88b2ba7a435f4100e0ad46e13f885514d5c4cf94cbd3d94329bfb4a600314d44b1b2c68bf1955b64ba17a3268f4
-MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
+DIST bowtie2-2.1.0-source.zip 5697131 SHA256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 SHA512 47535c0539674d81dfac16bf0f0730c766afce93fa91bef7eb4f73df2b73fb7988bc344495a909f81374a60ec79117b141442ff13a61af96fe4043dc0e47cc7c WHIRLPOOL fca873eb10c514c22e2aa46cce685050234c9d2838b7a66c6d5648425b980d93a627c187f26af16e74c6b70e8addb8c267dab5af68023b65591f8ad2616344fa
diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild
index 26bf770ca..a12279afd 100644
--- a/sci-biology/bowtie/bowtie-2.1.0.ebuild
+++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild
@@ -8,7 +8,7 @@ inherit eutils toolchain-funcs
DESCRIPTION="An ultrafast memory-efficient short read aligner"
HOMEPAGE="http://bowtie-bio.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip"
+SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip"
LICENSE="GPL-3"
SLOT="2"
@@ -41,11 +41,11 @@ src_compile() {
}
src_install() {
- dobin bowtie2 bowtie2-*
+ dobin ${PN}2 ${PN}2-*
exeinto /usr/share/${PN}2/scripts
doexe scripts/*
- newman MANUAL bowtie2.1
+ newman MANUAL ${PN}2.1
dodoc AUTHORS NEWS TUTORIAL
dohtml doc/manual.html doc/style.css