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authorBenda Xu <heroxbd@gentoo.org>2020-02-03 11:34:38 +0800
committerBenda Xu <heroxbd@gentoo.org>2020-02-03 12:02:34 +0800
commit4b71324f723868c8e6c4bef7f95776ba556e7932 (patch)
tree2a6801797dce7d9d01690c3971cafa03965daf0c
parentsci-biology/amos: remove from tree. (diff)
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sci-biology/consed2gap: remove from tree.
1. No upstream updates since 2005. 2. perl-app eclass is removed from main repo. Bug: https://bugs.gentoo.org/707558 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
-rw-r--r--sci-biology/consed2gap/Manifest1
-rw-r--r--sci-biology/consed2gap/consed2gap-20050520.ebuild37
-rw-r--r--sci-biology/consed2gap/metadata.xml12
3 files changed, 0 insertions, 50 deletions
diff --git a/sci-biology/consed2gap/Manifest b/sci-biology/consed2gap/Manifest
deleted file mode 100644
index f7e07d291..000000000
--- a/sci-biology/consed2gap/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST consed2gap-20050520.tgz 2963585 BLAKE2B a5320f06e1879b8f59f8681b258081814cdf27508daa906f3790a5c24f6f2b145fd034cedcb414108333d1070ab2bd4be129528902338d0691be8fee59b2dd35 SHA512 be994e85c8e06fc1ea21187a206985c4deab0e3f34723df663959f553a007c836368f700e60c81a8f1bfc715d940025ec0347a6a6fefaffdd02a390bfba7541f
diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild
deleted file mode 100644
index e8bf492df..000000000
--- a/sci-biology/consed2gap/consed2gap-20050520.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit perl-module perl-app
-
-DESCRIPTION="Convert whole CONSED dataset to a GAP4 project"
-HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
-SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz"
-
-LICENSE="FLI-Jena"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- dev-lang/perl:=
- sci-libs/io_lib
- sci-biology/caftools
- sci-biology/align_to_scf"
-
-S="${WORKDIR}/${PN}"
-
-src_prepare(){
- sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
- sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/badgerGetOpt.pl || die
-}
-
-src_install(){
- dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl
- dodir /usr/share/"${PN}"
- mv example "${ED}"/usr/share/"${PN}"/ || die
-
- cd bin && perl-module_src_install
-}
diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/consed2gap/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>