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authorS├ębastien Fabbro <bicatali@gentoo.org>2013-09-17 10:24:17 -0700
committerS├ębastien Fabbro <bicatali@gentoo.org>2013-09-17 10:24:17 -0700
commit593a634e321be682aecfeed7089cefa2beec462d (patch)
tree1e25506dcb0e5e65511381426a6c9c9c3d023b0d
parentsci-libs/scikits_image: Fix source directory, update dependencies, cleanup (b... (diff)
parentInCVs (diff)
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Merge github.com:gentoo-science/sci
-rw-r--r--sci-biology/biopython/ChangeLog10
-rw-r--r--sci-biology/biopython/biopython-1.62.ebuild49
-rw-r--r--sci-biology/biopython/metadata.xml5
3 files changed, 0 insertions, 64 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
deleted file mode 100644
index 0f1dbf120..000000000
--- a/sci-biology/biopython/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/biopython
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*biopython-1.62 (11 Sep 2013)
-
- 11 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- +biopython-1.62.ebuild, +metadata.xml:
- biopython-1.62.ebuild Manifest metadata.xml
-
diff --git a/sci-biology/biopython/biopython-1.62.ebuild b/sci-biology/biopython/biopython-1.62.ebuild
deleted file mode 100644
index 9413e775b..000000000
--- a/sci-biology/biopython/biopython-1.62.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.3 2013/07/02 12:47:34 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_5,2_6,2_7,3_3} )
-
-inherit distutils-r1
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
-SRC_URI="http://biopython.org/DIST/biopython-1.62.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README )
-S="${WORKDIR}/biopython-1.62"
-
-python_test() {
- cd Tests
- ${PYTHON} run_tests.py
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- insinto /usr/share/doc/${PF}
- doins -r Doc/*
- insinto /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
deleted file mode 100644
index f17a827e3..000000000
--- a/sci-biology/biopython/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-biology</herd>
-</pkgmetadata>