aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorKacper Kowalik (Xarthisius) <xarthisius@gentoo.org>2012-03-22 21:45:24 +0100
committerKacper Kowalik (Xarthisius) <xarthisius@gentoo.org>2012-03-22 21:45:24 +0100
commit71f00681dcb0bb8c092bfb2f8de1ed58867edf5e (patch)
tree37cf4be82b9e6990e427c804ad576256070d6d2f
parentBump intel compiler suite (diff)
parentNew package, ebuild written by me (diff)
downloadsci-71f00681dcb0bb8c092bfb2f8de1ed58867edf5e.tar.gz
sci-71f00681dcb0bb8c092bfb2f8de1ed58867edf5e.tar.bz2
sci-71f00681dcb0bb8c092bfb2f8de1ed58867edf5e.zip
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
-rw-r--r--sci-biology/blasr/ChangeLog10
-rw-r--r--sci-biology/blasr/Manifest1
-rw-r--r--sci-biology/blasr/blasr-9999.ebuild33
-rw-r--r--sci-biology/blasr/metadata.xml9
4 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/blasr/ChangeLog b/sci-biology/blasr/ChangeLog
new file mode 100644
index 000000000..f10ba2293
--- /dev/null
+++ b/sci-biology/blasr/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/blasr
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*blasr-9999 (22 Mar 2012)
+
+ 22 Mar 2012; Andrey Kislyuk <weaver@gentoo.org> +blasr-9999.ebuild,
+ +metadata.xml:
+ New package, ebuild written by me
+
diff --git a/sci-biology/blasr/Manifest b/sci-biology/blasr/Manifest
new file mode 100644
index 000000000..1e05a5de4
--- /dev/null
+++ b/sci-biology/blasr/Manifest
@@ -0,0 +1 @@
+EBUILD blasr-9999.ebuild 754 RMD160 47ec5b2ff70974554df65b9dd30a72bba0b3c317 SHA1 405660e484529b7ad7153398b7214f0bc3b96e70 SHA256 06ccd4903d54cbb539f273c6508963548b1f3f716ca89c29fbb35ccc45e5de5f
diff --git a/sci-biology/blasr/blasr-9999.ebuild b/sci-biology/blasr/blasr-9999.ebuild
new file mode 100644
index 000000000..94e874fa1
--- /dev/null
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1.1 2011/10/31 21:18:17 weaver Exp $
+
+EAPI=4
+
+MY_HASH=885c33a
+
+EGIT_REPO_URI="https://github.com/PacificBiosciences/blasr.git"
+
+inherit git
+
+DESCRIPTION="The PacBio long read aligner"
+HOMEPAGE="http://www.smrtcommunity.com/SMRT-Analysis/Algorithms/BLASR"
+#SRC_URI="https://github.com/PacificBiosciences/blasr/tarball/${PV} -> ${P}.tar.gz"
+SRC_URI=""
+
+LICENSE="as-is"
+SLOT="0"
+IUSE=""
+KEYWORDS=""
+
+DEPEND="sci-libs/hdf5[cxx]"
+RDEPEND=""
+
+S="${WORKDIR}/blasr-${MY_HASH}"
+
+ASSEMBLY_HOME="${D}/usr"
+
+src_install() {
+ dodir /usr/bin
+ make install ASSEMBLY_HOME="${D}/usr" || die
+}
diff --git a/sci-biology/blasr/metadata.xml b/sci-biology/blasr/metadata.xml
new file mode 100644
index 000000000..3302123e5
--- /dev/null
+++ b/sci-biology/blasr/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>