cleaning Manifest and digests

git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@501 32389bae-6d03-0410-99cf-db05cde120eb

9 files changed, 74 insertions, 109 deletions

diff --git a/app-office/texmacs/files/digest-texmacs-1.0.6.5 b/app-office/texmacs/files/digest-texmacs-1.0.6.5
new file mode 100644
index 000000000..2799dd4c0
--- /dev/null
+++ b/app-office/texmacs/files/digest-texmacs-1.0.6.5
@@ -0,0 +1,5 @@
+RMD160 4d83e98072cee30e06119d401cc01c942c4cb5b9 TeXmacs-1.0.6.5-src.tar.gz 3782401
+SHA256 f728fe30bcac51d2fb4bda225a60ea63a81dbbbc588d0c223f01809458c75f5c TeXmacs-1.0.6.5-src.tar.gz 3782401
+MD5 945dfd3f76b20082aeea8131d87a260f TeXmacs-600dpi-fonts.tar.gz 2899193
+RMD160 b5a27a59ed0c178f94836b828d12d3534b506582 TeXmacs-600dpi-fonts.tar.gz 2899193
+SHA256 e8eeb3c97a1405fd037b0567f683a6d2225d47c7829893b9768bd6c1c707cc81 TeXmacs-600dpi-fonts.tar.gz 2899193
diff --git a/app-office/texmacs/files/digest-texmacs-1.0.6.6 b/app-office/texmacs/files/digest-texmacs-1.0.6.6
new file mode 100644
index 000000000..db15a5830
--- /dev/null
+++ b/app-office/texmacs/files/digest-texmacs-1.0.6.6
@@ -0,0 +1,5 @@
+RMD160 587d671fb0732a3cd80e0452a039518c2a4a7b4e TeXmacs-1.0.6.6-src.tar.gz 3789730
+SHA256 253f1d1dba7f4b5405d7d55253c35942ce8cc38dcd9e8f10e4ac5cb65cd8928d TeXmacs-1.0.6.6-src.tar.gz 3789730
+MD5 945dfd3f76b20082aeea8131d87a260f TeXmacs-600dpi-fonts.tar.gz 2899193
+RMD160 b5a27a59ed0c178f94836b828d12d3534b506582 TeXmacs-600dpi-fonts.tar.gz 2899193
+SHA256 e8eeb3c97a1405fd037b0567f683a6d2225d47c7829893b9768bd6c1c707cc81 TeXmacs-600dpi-fonts.tar.gz 2899193
diff --git a/licenses/AURA b/licenses/AURA
deleted file mode 100644
index d62fd3729..000000000
--- a/licenses/AURA
+++ /dev/null
@@ -1,28 +0,0 @@
-Copyright (C) 2005 Association of Universities for Research in Astronomy (AURA)
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-    1. Redistributions of source code must retain the above copyright
-      notice, this list of conditions and the following disclaimer.
-
-    2. Redistributions in binary form must reproduce the above
-      copyright notice, this list of conditions and the following
-      disclaimer in the documentation and/or other materials provided
-      with the distribution.
-
-    3. The name of AURA and its representatives may not be used to
-      endorse or promote products derived from this software without
-      specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY AURA ``AS IS'' AND ANY EXPRESS OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL AURA BE LIABLE FOR ANY DIRECT, INDIRECT,
-INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
-BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
-OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
-ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
-TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
-USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
-DAMAGE.
diff --git a/licenses/mkl-8.0.1 b/licenses/mkl-8.0.1
deleted file mode 100644
index 8c5a2a4b0..000000000
--- a/licenses/mkl-8.0.1
+++ /dev/null
@@ -1,62 +0,0 @@
-IMPORTANT - READ BEFORE COPYING, INSTALLING OR USING.

-Do not copy, install, or use the Materials provided under this license agreement ("Agreement"), until you have carefully read the following terms and conditions.

-

-By copying, installing, or otherwise using the Materials, you agree to be bound by the terms of this Agreement.  If you do not agree to the terms of this Agreement, do not copy, install, or use the Materials.

-

-End User License Agreement for the Intel(R) Math Kernel Library 8.0.1

-

-1. LICENSE DEFINITIONS: 

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-A. "Materials" are defined as the software, documentation, license key codes and other materials, including any updates and upgrade thereto, that are provided to you under this Agreement.  Materials also include the Redistributables as defined below.

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diff --git a/profiles/use.local.desc b/profiles/use.local.desc
index a7807dbd6..c258ed126 100644
--- a/profiles/use.local.desc
+++ b/profiles/use.local.desc
@@ -9,10 +9,7 @@
 # We keep here only the new USE flags introduced by packages in the overlay.
 # Ultimately, they will be merged into the main tree.
 
-dev-python/matplotlib:agg - Build with external antigrain library
-sci-astronomy/celestia:cairo - Use cairo for celestia GTK splash screen
 sci-astronomy/scamp:plplot - Add plplot to allow diagnostic plots during processing 
-sci-libs/scipy:umfpack - Add umfpack support to scipy
 sci-physics/root:cern - Add hbook i/o support via cernlib
 sci-visualization/hippodraw:fits - Add FITS support to hippodraw, via cfitsio
 sci-visualization/hippodraw:minuit - Add minimization software minuit support
diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest
new file mode 100644
index 000000000..ffda79799
--- /dev/null
+++ b/sci-chemistry/apbs/Manifest
@@ -0,0 +1,16 @@
+AUX apbs-examples-gentoo.patch 1446 RMD160 f0468219d3295cbaf90de7c0e3489d443f1ea144 SHA1 906197ecc9ee745cb0573ed2798a671cccd7b5a4 SHA256 1b12fdf855c4e80bb6e88d6b9c433a4c18eb406a5a6d1671146be897452863d4
+MD5 43dd7c966e75cdbd40215b3616cfddf5 files/apbs-examples-gentoo.patch 1446
+RMD160 f0468219d3295cbaf90de7c0e3489d443f1ea144 files/apbs-examples-gentoo.patch 1446
+SHA256 1b12fdf855c4e80bb6e88d6b9c433a4c18eb406a5a6d1671146be897452863d4 files/apbs-examples-gentoo.patch 1446
+AUX apbs-gcc4-gentoo.patch 1080 RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309 SHA1 c102e23f81627891552194896f2769f2cb7f0d6e SHA256 9077f4ffc41a2af28eed4193a2e56d20b668e2bc280ca2740d3a8803e28c48d6
+MD5 c54fdb174c6ca236268f3fb45c3c837e files/apbs-gcc4-gentoo.patch 1080
+RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309 files/apbs-gcc4-gentoo.patch 1080
+SHA256 9077f4ffc41a2af28eed4193a2e56d20b668e2bc280ca2740d3a8803e28c48d6 files/apbs-gcc4-gentoo.patch 1080
+DIST apbs-0.5.0-source-2.tar.gz 10171621 RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 SHA1 4d3376a62169e3965a2d3b49a2b4b1014bf7721e SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08
+EBUILD apbs-0.5.0.ebuild 1917 RMD160 233a0a3cf5de2cf68eb72ae218fd904f4eec08e0 SHA1 687f2a5e08415e5653db06ce84fa061ea5f94fa1 SHA256 d2bc27bbf58793ab5c34d01d966655667f32fba737c02345c16399c1281f1caf
+MD5 4470d52c370a356fc69439301edac35b apbs-0.5.0.ebuild 1917
+RMD160 233a0a3cf5de2cf68eb72ae218fd904f4eec08e0 apbs-0.5.0.ebuild 1917
+SHA256 d2bc27bbf58793ab5c34d01d966655667f32fba737c02345c16399c1281f1caf apbs-0.5.0.ebuild 1917
+MD5 2e793d5244707356fd7f9ff50ea767c5 files/digest-apbs-0.5.0 265
+RMD160 9aee8d28472d0c967b4eaf0b9db7b7a3c4c40d04 files/digest-apbs-0.5.0 265
+SHA256 dbab309772ba0dcaa2605863678f47c1db4575bb72fb20d31aa4ccee8a7e37ef files/digest-apbs-0.5.0 265
diff --git a/sci-chemistry/jmol/Manifest b/sci-chemistry/jmol/Manifest
new file mode 100644
index 000000000..6b1d748de
--- /dev/null
+++ b/sci-chemistry/jmol/Manifest
@@ -0,0 +1,36 @@
+AUX caffeine.xyz 1116 RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 SHA1 d0f35a447b333b8ea51c15ab0ac67d887556e43c SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f
+MD5 c0204ee82eba27bc55b8856ba8cdf6a4 files/caffeine.xyz 1116
+RMD160 92b432c6584cd927fa1bfb155ea41011ab7a82d8 files/caffeine.xyz 1116
+SHA256 45a9afac0b247780595944a98f8e1076a7e7e0dbb3e02cb54cecb0764b1cb67f files/caffeine.xyz 1116
+AUX index.html 328 RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b SHA1 7ab256d768d3a4da43b5e497dfb1c3a53a8068a9 SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451
+MD5 fe4402e54486534640b0863007ad4877 files/index.html 328
+RMD160 60d2a573c228e018a864fd7d9cfc7554264ccd6b files/index.html 328
+SHA256 8cba2c5eb7f25c0ecf23bc007eb61549a7d2177ac327db6c1e5f51f333ae2451 files/index.html 328
+AUX jmol-10.2.0-manifest.patch 2228 RMD160 e2e739dff8867bbf8bcb5af1aa5e8143654f254a SHA1 10c9993b9148b8a614a9b60d922be2375e3bcced SHA256 b3940f40a5e81895fa4013786eb1f825cc1aa443a0211c9c9ceed9e16c038f2a
+MD5 ba182e9bc07219f3bc287a3594ac3c82 files/jmol-10.2.0-manifest.patch 2228
+RMD160 e2e739dff8867bbf8bcb5af1aa5e8143654f254a files/jmol-10.2.0-manifest.patch 2228
+SHA256 b3940f40a5e81895fa4013786eb1f825cc1aa443a0211c9c9ceed9e16c038f2a files/jmol-10.2.0-manifest.patch 2228
+AUX jmol-10.2.0-nointl.patch 8509 RMD160 afeb8603d7c7c2a025967079bc9efdbd10c6c4a6 SHA1 9cf46601e862c374ab989cde6151b43b91f92158 SHA256 f3cd9a7e65965a89c08a62bb253475c23c45d6a327821f102fd4693fc6a49045
+MD5 2236b0b0135c44c2716fb1f5fbe6f614 files/jmol-10.2.0-nointl.patch 8509
+RMD160 afeb8603d7c7c2a025967079bc9efdbd10c6c4a6 files/jmol-10.2.0-nointl.patch 8509
+SHA256 f3cd9a7e65965a89c08a62bb253475c23c45d6a327821f102fd4693fc6a49045 files/jmol-10.2.0-nointl.patch 8509
+AUX selfSignedCertificate.store 1516 RMD160 583b7bab5578e1e32f649388b7009dc654df1199 SHA1 88d9123bdc1a376ba00e00c8abef4751adefe3a5 SHA256 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5
+MD5 bf2be32212c831e4fa369809a639b75d files/selfSignedCertificate.store 1516
+RMD160 583b7bab5578e1e32f649388b7009dc654df1199 files/selfSignedCertificate.store 1516
+SHA256 81b69722530d94dc599ce79382a3386cce518baa7ab79fbb530d13483b51bed5 files/selfSignedCertificate.store 1516
+DIST jmol-10.2.0-full.tar.gz 10551595 RMD160 23fa2847f7dd2e6a5ae0ff36a788c5789bc2d043 SHA1 65cf9b6e40f8366e30f2dd0a9245fc113a41c924 SHA256 b47134cd6da869099dcb5f052ca7e3fd6438cdeb255e58a3572bf490d4ca2b35
+EBUILD jmol-10.2.0.ebuild 2426 RMD160 7f0ec73d7731c49ea0fbea1ed525561857d16c29 SHA1 f05e244e9f7f96fbbacaaadd9df1f93fab04d3a3 SHA256 b3d7930b3f6b257e0d9c4d2a1acd805a59016873c3f95912e19029bcaf49111b
+MD5 52c75b2e25efb35dc3d0b877f42b3caf jmol-10.2.0.ebuild 2426
+RMD160 7f0ec73d7731c49ea0fbea1ed525561857d16c29 jmol-10.2.0.ebuild 2426
+SHA256 b3d7930b3f6b257e0d9c4d2a1acd805a59016873c3f95912e19029bcaf49111b jmol-10.2.0.ebuild 2426
+MISC ChangeLog 478 RMD160 db8004318a2cb8bb4528ececded68cc74985fc24 SHA1 5543f617f68f24c06a34ca6a18aa2f548f05f25a SHA256 48f0aeee0f127bdabdabc5609239c7911a56b96f13a9304465ff147a5c3087a1
+MD5 a484ace0dc7d7561771d4f27d361c765 ChangeLog 478
+RMD160 db8004318a2cb8bb4528ececded68cc74985fc24 ChangeLog 478
+SHA256 48f0aeee0f127bdabdabc5609239c7911a56b96f13a9304465ff147a5c3087a1 ChangeLog 478
+MISC metadata.xml 266 RMD160 971f2bb897a7b7766a06d390367337631c7bd824 SHA1 658ccc2742f866f2ff2df2f2089d680eccc8283e SHA256 067b147708e039efb017dfddd9de9c4d7ecd8c01bb131322a1062c68344fbf6d
+MD5 96e0a204a2daa3c03b7c556cafe62711 metadata.xml 266
+RMD160 971f2bb897a7b7766a06d390367337631c7bd824 metadata.xml 266
+SHA256 067b147708e039efb017dfddd9de9c4d7ecd8c01bb131322a1062c68344fbf6d metadata.xml 266
+MD5 89a59259b6cdb4a59c7968e1d1eaad29 files/digest-jmol-10.2.0 256
+RMD160 7a096817c101303f3ee22d88fe076c7d97bbe440 files/digest-jmol-10.2.0 256
+SHA256 0ac01ee3a860958259fe1131af5d78a5d37f07951698274b115d7c21c8630173 files/digest-jmol-10.2.0 256
diff --git a/sci-libs/cgal-python/Manifest b/sci-libs/cgal-python/Manifest
index cfd11e660..1276d4c44 100644
--- a/sci-libs/cgal-python/Manifest
+++ b/sci-libs/cgal-python/Manifest
@@ -1,12 +1,12 @@
 DIST cgal-python-0.9.1.tar.gz 146703 RMD160 e52f352b359678132db3019ed2d5edec57dd93a3 SHA1 38d08c28ac31eb2f84289a7e2487c49b2575b11f SHA256 507608cf34e6bdee77fdc0aaa753a2d882a8e1f36fb2531bc52a44774bc902e1
-EBUILD cgal-python-0.9.1.ebuild 1080 RMD160 a0dfa065763db29d7508bda7621848a1cb3ceb29 SHA1 ec850fa97e548bc5db0e5e3048e9a0589c225059 SHA256 778c898371455fbd0ee477c001b17bb2396a74d6e5fd43415496751b3c1c7350
-MD5 5cee72a5d4c33fe0a185f2f9849c02ef cgal-python-0.9.1.ebuild 1080
-RMD160 a0dfa065763db29d7508bda7621848a1cb3ceb29 cgal-python-0.9.1.ebuild 1080
-SHA256 778c898371455fbd0ee477c001b17bb2396a74d6e5fd43415496751b3c1c7350 cgal-python-0.9.1.ebuild 1080
-MISC .cgal-python-0.9.1.ebuild.swp 12288 RMD160 9010df930e18274eba4486521fb669c6cc544d64 SHA1 0e6c91b571a94d12e942ed6b5704cdfd0d4290ad SHA256 9ae82bb03db561877cdc0621a56d76417827a91f1fc913be8d04bb7a58c3856d
-MD5 1c80623c18e0be1a0fc9d2a67c729b00 .cgal-python-0.9.1.ebuild.swp 12288
-RMD160 9010df930e18274eba4486521fb669c6cc544d64 .cgal-python-0.9.1.ebuild.swp 12288
-SHA256 9ae82bb03db561877cdc0621a56d76417827a91f1fc913be8d04bb7a58c3856d .cgal-python-0.9.1.ebuild.swp 12288
+EBUILD cgal-python-0.9.1.ebuild 1107 RMD160 5535aa19d07856cf7a17e8d99ead8e5b5dd16cec SHA1 92887ad601aa5a5361a77a7a3756275883bc81dc SHA256 370c1847ff7deb0eed3e5064cc76bbccfb80fde54dc7b2f8c1f258f30a7b963e
+MD5 8b70c2f8a269312aa01ea850d1fa26ba cgal-python-0.9.1.ebuild 1107
+RMD160 5535aa19d07856cf7a17e8d99ead8e5b5dd16cec cgal-python-0.9.1.ebuild 1107
+SHA256 370c1847ff7deb0eed3e5064cc76bbccfb80fde54dc7b2f8c1f258f30a7b963e cgal-python-0.9.1.ebuild 1107
+MISC metadata.xml 169 RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d SHA1 0c953712f9b97d5ab3f95ae71997ffbc96c4007d SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180
+MD5 710d6aa631e09429775457ff1d26b14e metadata.xml 169
+RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d metadata.xml 169
+SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180 metadata.xml 169
 MD5 892875192ee722b10dbd56dc7b402378 files/digest-cgal-python-0.9.1 253
 RMD160 f7bd3ed27dbc7bbe7721ff811e0085aa381e7765 files/digest-cgal-python-0.9.1 253
 SHA256 c6b74b654cb72e5f6d0b08bd03627006cb63a503418e2de8862e5d9a9d1bdd2d files/digest-cgal-python-0.9.1 253
diff --git a/sci-libs/cgal/Manifest b/sci-libs/cgal/Manifest
index 66d1df42f..235083e1c 100644
--- a/sci-libs/cgal/Manifest
+++ b/sci-libs/cgal/Manifest
@@ -7,14 +7,10 @@ MD5 2b451c68c6ee52ae7f164037763b7b20 files/cgal_soname.patch 436
 RMD160 abbaf339bc91c55cc85688b0d431c73314c37838 files/cgal_soname.patch 436
 SHA256 1d51e828c7c4a13e0d9ba9120a55d09ffde5a35b8b4141827868e0f6805a4ae1 files/cgal_soname.patch 436
 DIST CGAL-3.2.1.tar.gz 6391058 RMD160 a0d484140c58f19c0aecd2085588df4d51d41165 SHA1 7999cdd99b35324a6cd0c4c1747e08f5bcd87b95 SHA256 b3dd4fa56744738cb77f18c5097a409fa0ab8245e745fb56e8ebca4311c2a353
-EBUILD cgal-3.2.1.ebuild 3602 RMD160 1bd21b8e46d4ccf7b5b43fbd3bc5d2956bdaa954 SHA1 d51b0e9062a142a211657614d906c6c850b466e8 SHA256 c7f6b50ec988c390e87dd011783afbc5f1698cfc6aee83089811d3f2c4a43245
-MD5 45e400ffd8a8cc1a4458d42f755e0b95 cgal-3.2.1.ebuild 3602
-RMD160 1bd21b8e46d4ccf7b5b43fbd3bc5d2956bdaa954 cgal-3.2.1.ebuild 3602
-SHA256 c7f6b50ec988c390e87dd011783afbc5f1698cfc6aee83089811d3f2c4a43245 cgal-3.2.1.ebuild 3602
-MISC .cgal-3.2.1.ebuild.swp 16384 RMD160 4faa3b8d3fcbe67aaf1e6fdf31d2916180bbdb28 SHA1 a3c58a0d2926e6945208540d629cdf96b13b2685 SHA256 3f85a9b9369891f42a7481a47480b770888e571c42fe64d103c2bd15b3d910ff
-MD5 7b9bd946077897140618864f1eabd5c2 .cgal-3.2.1.ebuild.swp 16384
-RMD160 4faa3b8d3fcbe67aaf1e6fdf31d2916180bbdb28 .cgal-3.2.1.ebuild.swp 16384
-SHA256 3f85a9b9369891f42a7481a47480b770888e571c42fe64d103c2bd15b3d910ff .cgal-3.2.1.ebuild.swp 16384
+EBUILD cgal-3.2.1.ebuild 3640 RMD160 63328ed295a0f90cede55b177bce19b9be33000b SHA1 78fcb2727f174047d074add1458c01e920042a68 SHA256 9c175795ca341598bc2cabf362400a921f455f2a8d180f5d4c16efe0ab97eea3
+MD5 572bcf311609c2c005d49ffe615c721e cgal-3.2.1.ebuild 3640
+RMD160 63328ed295a0f90cede55b177bce19b9be33000b cgal-3.2.1.ebuild 3640
+SHA256 9c175795ca341598bc2cabf362400a921f455f2a8d180f5d4c16efe0ab97eea3 cgal-3.2.1.ebuild 3640
 MISC metadata.xml 169 RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d SHA1 0c953712f9b97d5ab3f95ae71997ffbc96c4007d SHA256 36837b011d26f0b83477c7a8632cb0099aedbcba5a3e45c61f20292e079f6180
 MD5 710d6aa631e09429775457ff1d26b14e metadata.xml 169
 RMD160 e1db75ae5d177dffc400468c7d76a7e1fe41876d metadata.xml 169