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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-06-26 09:59:41 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-06-26 09:59:41 +0200 |
| commit | 75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9 (patch) | |
| tree | 3d71a4c4e72c59e7c5a566f0bdec5e73fc9cf58e | |
| parent | sci-biology/gffcompare: new package (diff) | |
| download | sci-75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9.tar.gz sci-75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9.tar.bz2 sci-75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9.zip | |
sci-biology/gffread: fetch gclib and use during compilation
The soucre tree is not made to use site-wide installed headers from
gclib. I am not going to figure out git commit tag of gclib automagically
bundled into some gffread binary when gffread was released (to make
a dedicated gclib-$commitnr.tar.gz file for Gentoo/Debian/etc. and to
include it into SRC_URI here so gffread could use it.
It is the task for upstream author to properly document required versions
of dependencies and release them properly.
https://github.com/gpertea/gffread/issues/26#issuecomment-400134376
Package-Manager: Portage-2.3.40, Repoman-2.3.9
| -rw-r--r-- | sci-biology/gffread/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gffread/files/Makefile.patch | 6 | ||||
| -rw-r--r-- | sci-biology/gffread/gffread-0.9.12.ebuild | 8 |
3 files changed, 9 insertions, 6 deletions
diff --git a/sci-biology/gffread/Manifest b/sci-biology/gffread/Manifest index 61d4a8659..d27690e24 100644 --- a/sci-biology/gffread/Manifest +++ b/sci-biology/gffread/Manifest @@ -1 +1,2 @@ +DIST gclib-0.10.2.tar.gz 169370 BLAKE2B 21f50ce5c6b4f5e703243ce96ee983a20c37a4bedcc11aa5ac8c29eed659b88a040d36172fcabe0ac9da5f85cb7593181ada538c5a9f16e6efb0ecdb1987d501 SHA512 6ba8ce4abdc373c17e81e65b280d09f4452e19f3207a8d8be44f3c98a611ea589393a4d6c9d4acb8c465c3703d3f9bafca432a0b58568ea1927c25da9654f87e DIST gffread-0.9.12.tar.gz 27010 BLAKE2B 5da01f7d595b42277cc372326bdb4d538d7edeee8e2c80b62cfc0691d43594feda4404e6b05884d42b07396924b16c3f45436919c06023a07e11ef04c7f854c8 SHA512 5107ccfd14455970ea555d25288c8097fc562c33bc9c477500e43b0beb2163db44552d6b61dc499902806495cac576d557237653c58cf8410ace062c180181e8 diff --git a/sci-biology/gffread/files/Makefile.patch b/sci-biology/gffread/files/Makefile.patch index 45f8c3ebd..35e6b088e 100644 --- a/sci-biology/gffread/files/Makefile.patch +++ b/sci-biology/gffread/files/Makefile.patch @@ -1,8 +1,8 @@ ---- gffread-0.9.12/Makefile 2018-06-26 00:05:05.298388489 +0200 -+++ gffread-0.9.12/Makefile 2018-06-26 00:07:07.461729681 +0200 +--- gffread-0.9.12/Makefile 2018-06-26 09:52:26.024747027 +0200 ++++ gffread-0.9.12/Makefile 2018-06-26 09:52:41.845177021 +0200 @@ -1,4 +1,4 @@ -GCLDIR := ../gclib -+GCLDIR := $(EPREFIX)/usr/include/gclib ++GCLDIR := ../gclib-0.10.2 SEARCHDIRS := -I. -I${GCLDIR} SYSTYPE := $(shell uname) diff --git a/sci-biology/gffread/gffread-0.9.12.ebuild b/sci-biology/gffread/gffread-0.9.12.ebuild index 968ebc256..fc60b9a81 100644 --- a/sci-biology/gffread/gffread-0.9.12.ebuild +++ b/sci-biology/gffread/gffread-0.9.12.ebuild @@ -4,15 +4,17 @@ EAPI=6 DESCRIPTION="GFF/GTF utility providing format conversions, filter/extract regions from FASTA" -HOMEPAGE="https://github.com/gpertea/gffread" -SRC_URI="https://github.com/gpertea/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" +HOMEPAGE="http://ccb.jhu.edu/software/stringtie/gff.shtml + https://github.com/gpertea/gffread" +SRC_URI="https://github.com/gpertea/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://github.com/gpertea/gclib/archive/v0.10.2.tar.gz -> gclib-0.10.2.tar.gz" LICENSE="MIT" SLOT="0" KEYWORDS="" IUSE="" -DEPEND="sci-biology/gclib" +DEPEND="" RDEPEND="${DEPEND}" PATCHES=( "${FILESDIR}"/Makefile.patch ) |