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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-01 01:10:46 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-01 01:10:46 +0200 |
| commit | 778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c (patch) | |
| tree | bb2b333177532b94b518f4274995e59dfac9def7 | |
| parent | sci-biology/reapr: quick and dirty Debian patches do not help me with sci-bio... (diff) | |
| download | sci-778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c.tar.gz sci-778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c.tar.bz2 sci-778b9cad7be047675ab8b1c8b0d54e5f4f2c7f4c.zip | |
sci-biology/bamtools: version bump; still suffers gentoo bug #550144
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/bamtools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bamtools/bamtools-2.4.0.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch | 23 |
3 files changed, 55 insertions, 0 deletions
diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest new file mode 100644 index 000000000..67377b14c --- /dev/null +++ b/sci-biology/bamtools/Manifest @@ -0,0 +1 @@ +DIST bamtools-2.4.0.tar.gz 539779 SHA256 f1fe82b8871719e0fb9ed7be73885f5d0815dd5c7277ee33bd8f67ace961e13e SHA512 33332f290e72ed3943c9df6022a44cfcd358ae1c1d41b1b494c7087a66e865529721ee6230212313d482cb66764573e300f362fee9ccbf3c0da18544bf2e9425 WHIRLPOOL 93097730c225f64c923dcf755df1990d3ba150aef29d227b88f25c9d97bc08745640dfffb05f7b789ff1aa4ef40ae982780be1165dac81717ce27b9664cfebf2 diff --git a/sci-biology/bamtools/bamtools-2.4.0.ebuild b/sci-biology/bamtools/bamtools-2.4.0.ebuild new file mode 100644 index 000000000..b2d7d623f --- /dev/null +++ b/sci-biology/bamtools/bamtools-2.4.0.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit cmake-utils + +DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" +HOMEPAGE="https://github.com/pezmaster31/bamtools" +SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="static-libs" + +DEPEND=" + >=dev-libs/jsoncpp-0.5.0-r1 + <dev-libs/jsoncpp-1 + sys-libs/zlib" +RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${P}-unbundle.patch ) + +src_install() { + cmake-utils_src_install + if ! use static-libs; then + rm "${ED}"/usr/$(get_libdir)/*.a || die + fi +} diff --git a/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch new file mode 100644 index 000000000..c07c59d2c --- /dev/null +++ b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch @@ -0,0 +1,23 @@ +--- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200 ++++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200 +@@ -54,8 +54,8 @@ + target_link_libraries( BamTools-static ${APILibs} ) + + # set library install destinations +-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin") +-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools") ++install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin") ++install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}") + + # export API headers + include(../ExportHeader.cmake) +--- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200 ++++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200 +@@ -6,7 +6,6 @@ + # ========================== + + add_subdirectory( api ) +-add_subdirectory( third_party ) + add_subdirectory( toolkit ) + add_subdirectory( utils ) + |