The dependency of several packages on sci-libs/libxc modified to reflect correctly the recent change in the upgrade of sci-physics/abinit & friends.

27 files changed, 206 insertions, 35 deletions

diff --git a/profiles/package.mask b/profiles/package.mask
index 0c270df4b..f354cdf57 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -68,6 +68,12 @@
 >=sci-chemistry/coot-9999
 >=sci-chemistry/pymol-9999
 
+# Honza Macháček <Hloupy.Honza@centrum.cz> (17 June 2013)
+# bigdft moved from sci-libs to sci-physics
+# sci-physics/abinit now uses sci-libs/bigdft-abi instead
+# sci-libs/bigdft should be deleted in 30 days
+sci-libs/bigdft
+
 # Justin Lecher <jlec@gentoo.org> (03 March 2013)
 # Missing deps
 sci-biology/gbrowse
diff --git a/sci-chemistry/freeon/freeon-2012.05.03.ebuild b/sci-chemistry/freeon/freeon-2012.05.03.ebuild
index 99805e0dc..5a9cc6a94 100644
--- a/sci-chemistry/freeon/freeon-2012.05.03.ebuild
+++ b/sci-chemistry/freeon/freeon-2012.05.03.ebuild
@@ -33,11 +33,8 @@ DEPEND="${DEPEND}
 S="${WORKDIR}/${REAL_PN}-${REAL_PV}"
 
 src_prepare() {
-	# Get rid of the obsolete internal hdf5
-	rm -r "${S}"/hdf5-1.8.3
-	# as well as of the internal lapack
-	rm -r "${S}"/lapack
-	epatch "${FILESDIR}"/"${P}"-no_internal_libs.patch
+	# Prevent the obsolete internal hdf5 breaking autoconf
+	epatch "${FILESDIR}"/"${P}"-no_internal_hdf5.patch
 	eautoreconf
 }
 
diff --git a/sci-chemistry/freeon/freeon-9999.ebuild b/sci-chemistry/freeon/freeon-9999.ebuild
index 369e063f8..6d02d9380 100644
--- a/sci-chemistry/freeon/freeon-9999.ebuild
+++ b/sci-chemistry/freeon/freeon-9999.ebuild
@@ -31,11 +31,8 @@ DEPEND="${DEPEND}
 	virtual/pkgconfig"
 
 src_prepare() {
-	# Get rid of the obsolete internal hdf5
-	rm -r "${S}"/Modules/hdf5-1.8.3
-	# as well as of the internal lapack
-	rm -r "${S}"/Modules/lapack
-	epatch "${FILESDIR}"/"${P}"-no_internal_libs.patch
+	# Prevent the obsolete internal hdf5 breaking autoconf
+	epatch "${FILESDIR}"/"${P}"-no_internal_hdf5.patch
 	eautoreconf
 }
 
diff --git a/sci-chemistry/mics/ChangeLog b/sci-chemistry/mics/ChangeLog
new file mode 100644
index 000000000..0ca4c986a
--- /dev/null
+++ b/sci-chemistry/mics/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/mics
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*mics-1.00.2011.327.12.00 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +mics-1.00.2011.327.12.00.ebuild, +metadata.xml:
+  New package
+
diff --git a/sci-chemistry/mics/Manifest b/sci-chemistry/mics/Manifest
new file mode 100644
index 000000000..ef2418ffc
--- /dev/null
+++ b/sci-chemistry/mics/Manifest
@@ -0,0 +1 @@
+DIST mics-1.00.2011.327.12.00.tgz 5607489 SHA256 b9e031ee6c772702ce30f4098b3da77d72b32508d218da9efb0ef49b21a865c8 SHA512 275eacd7ff6978a725aa0c3d41b9b69285463ccd4ad8686fdf912e7da30cf395723bffa91c6aaba61c8f2c56763a767367a67fe0dea11113186999a2db3b864c WHIRLPOOL eda4b8d5ef2a749a592be8636763d26d84f3e5646c2ec831f942f560d0656026cdd19cac0d375ac8c45be396d118bf25f62455dc5f999eb17164327000e2a56b
diff --git a/sci-chemistry/mics/metadata.xml b/sci-chemistry/mics/metadata.xml
new file mode 100644
index 000000000..51fdedab1
--- /dev/null
+++ b/sci-chemistry/mics/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild b/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild
new file mode 100644
index 000000000..5f86a08f4
--- /dev/null
+++ b/sci-chemistry/mics/mics-1.00.2011.327.12.00.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Structural Motifs from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/MICS/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/MICS/mics.tar.Z -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"/MICS
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	rm -f bin/MICS.{mac,static.*,exe} || die
+}
+
+src_install() {
+	local MICS="/opt/${PN}"
+	exeinto /opt/bin
+	newexe bin/MICS* ${PN}
+
+	insinto ${MICS}
+	doins -r tab
+
+	java-pkg_jarinto ${MICS}
+	java-pkg_dojar bin/rama.jar
+
+	java-pkg_dolauncher jrama+ --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40MICS <<- EOF
+	MICS_DIR="${EPREFIX}/${MICS}"
+	EOF
+	doenvd "${T}"/40MICS
+}
diff --git a/sci-chemistry/modeller/ChangeLog b/sci-chemistry/modeller/ChangeLog
index 198256b1f..2817f00e5 100644
--- a/sci-chemistry/modeller/ChangeLog
+++ b/sci-chemistry/modeller/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*modeller-9.12-r1 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org> -modeller-9.12.ebuild,
+  +modeller-9.12-r1.ebuild:
+  Fix broken symlink, #473680
+
   16 Jun 2013; Justin Lecher <jlec@gentoo.org> -modeller-9.8.ebuild,
   +modeller-9.12.ebuild, metadata.xml:
   Version BUmp; BUmp to EAPI5 and distutils-r1.eclass
diff --git a/sci-chemistry/modeller/modeller-9.12.ebuild b/sci-chemistry/modeller/modeller-9.12-r1.ebuild
index 0cabf476a..a25aa7fae 100644
--- a/sci-chemistry/modeller/modeller-9.12.ebuild
+++ b/sci-chemistry/modeller/modeller-9.12-r1.ebuild
@@ -82,7 +82,7 @@ python_install_all(){
 
 	exeinto ${INPATH}/lib/${EXECTYPE}/
 	doexe lib/${EXECTYPE}/lib*
-	dosym libmodeller.so.5 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+	dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
 
 	use doc && HTML_DOCS=( doc/. )
 	distutils-r1_python_install_all
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 000000000..dea3c84e4
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+  18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+  +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+  New package
+
diff --git a/sci-chemistry/talosn/Manifest b/sci-chemistry/talosn/Manifest
new file mode 100644
index 000000000..8376af51a
--- /dev/null
+++ b/sci-chemistry/talosn/Manifest
@@ -0,0 +1 @@
+DIST talosn-4.01.2013.148.15.55.tgz 136746268 SHA256 618ffc7f0ac15ac85e4f0034c2e8997f6ea98aef673ee6fe5852fd481e0a60f1 SHA512 365e4f699a0d991730ecf5835685db832339926dcb2b60c59c4d1ea9707d4b9bc48ad46342b702dcb5a7a4a373d7d2e863658116393cc7682027b1237b99ed5f WHIRLPOOL 0a51e20792880d22422316776aeb41feb8ef4ab2deb0cabf71dd0a19f7dc816bdff5f84e7593115216187e39df1f0ea9f4dbde7a087021d7a76cf55569c5ec9f
diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 000000000..51fdedab1
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 000000000..ac569c3a8
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+	local s64
+	use amd64 || s64="_x64"
+	rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+	local TALOSN="/opt/${PN}"
+	exeinto ${TALOSN}/bin
+	doexe bin/*
+
+	exeinto ${TALOSN}/com
+	doexe com/*
+
+	exeinto /opt/bin
+	doexe talosn{,_ss}
+
+	insinto ${TALOSN}
+	doins -r tab
+
+	java-pkg_jarinto ${TALOSN}
+	java-pkg_dojar rama.jar
+
+	java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r demo
+	fi
+
+	cat >> "${T}"/40talosn <<- EOF
+	TALOSN_DIR="${EPREFIX}/${TALOSN}"
+	EOF
+	doenvd "${T}"/40talosn
+}
diff --git a/sci-libs/bigdft-abi/ChangeLog b/sci-libs/bigdft-abi/ChangeLog
index 4c4800877..10eceadcb 100644
--- a/sci-libs/bigdft-abi/ChangeLog
+++ b/sci-libs/bigdft-abi/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
+  bigdft-abi-1.0.4.ebuild:
+  The dependency on sci-libs/libxc modified to allow for 1.2.0-r1.
+
 *bigdft-abi-1.0.4 (17 Jun 2013)
 
   17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
diff --git a/sci-libs/bigdft-abi/Manifest b/sci-libs/bigdft-abi/Manifest
index bd17fc562..e8a8b973e 100644
--- a/sci-libs/bigdft-abi/Manifest
+++ b/sci-libs/bigdft-abi/Manifest
@@ -1,3 +1 @@
-AUX bigdft-abi-1.0.4-tests.tar.bz2 402968 SHA256 11144208456b001f63b75cadce0e9b685054ef8bbc39a76cb08af61d5c86c4fb SHA512 3594d11a8d5834916f44bf6f049630ac9d092df6a7a3171701ef65e5ab56e9d039c2bb4603698cb4935a95189c65d7bf77f44b50617ea8c971a844a2757b3202 WHIRLPOOL 492b92805a4eecb5bb204dbf76acf9a40c790b39708a914e38628a2f4dadc3377eed79f8d986231c006bc8c5be0167af60c36f72212005156e8fe3a3c619281c
 DIST bigdft-abi-1.0.4.tar.gz 8982260 SHA256 345cf49da92275710252d50b4ac8364f2f3c33e8f28d84d7b13ccf6fd0c69310 SHA512 556001d1ffd08be70b97f07a8a150d5d033a4611957180a7a25b41963754e0e3d2bb2a4e9d5b6beb8ff6fb1eb6f4ae9b51633cfe3d7f5a8ed20a85be21031c35 WHIRLPOOL b7c58732b538306f2b9b89b1310d9212cc1bb038fded782e6707e54679013ebc8376d54b5bd1bd51464dc7878fa05102fcba8f70a5d38b4571720c8d57ee3af1
-EBUILD bigdft-abi-1.0.4.ebuild 4232 SHA256 006484b64a83d7971efc05670b77d26114eed87f0d062c39e9b9bf01a4a005ce SHA512 bc34310bf3b4b3999574be8f67db51072a53b2a14fbf340edb72d046989f088b3c12b65f98a781fb5791263ce4c947786ee250dcbe4c162dcd194711321db4b5 WHIRLPOOL 28a1b685e427500acda0e210c9d2e72bbcd24bfe2be1b09112a1aab829d1efe9a896e28b45b42ec7db29c4908bc7cb3b73c83d0ad77accf9269ee9774e310537
diff --git a/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild b/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
index c285d6326..91e3bac69 100644
--- a/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
+++ b/sci-libs/bigdft-abi/bigdft-abi-1.0.4.ebuild
@@ -19,7 +19,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux"
 IUSE="cuda doc etsf_io mpi netcdf openmp opencl test"
 
 RDEPEND="
-	>=sci-libs/libxc-2.0.1[fortran]
+	>=sci-libs/libxc-1.2.0-r1[fortran]
 	virtual/blas
 	virtual/fortran
 	virtual/lapack
@@ -75,9 +75,6 @@ pkg_setup() {
 }
 
 src_prepare() {
-# 	epatch \
-# 		"${FILESDIR}"/"${P}"-nolib_mods.patch
-#
 	tar -xjf "${FILESDIR}"/"${P}"-tests.tar.bz2 -C "${S}"/tests/DFT/
 	eautoreconf
 }
diff --git a/sci-libs/libxc/Manifest b/sci-libs/libxc/Manifest
index fa863cf20..a85ebc898 100644
--- a/sci-libs/libxc/Manifest
+++ b/sci-libs/libxc/Manifest
@@ -1,2 +1,2 @@
-DIST libxc-1.1.0.tar.gz 543168 SHA256 b75fb2a73a9e2d75e250cc77b71d5485c8e9b11c3b25c91899c366e217283c57 SHA512 a5ed3a4a7a7abaa11321fe877d01ff00132eab976205213e578cd57fbd2073eea00ce3a3afc188e30ebbd31deb32468c4472313df9992e8d9e3148e6f619936b WHIRLPOOL 8ff70acb2ee65b3373942b71e350fe146f1c205aa4c09dbb22adc04227ba6888482ce412b3e843a9402efd51f9cf6f478f9c65b97305b2035185e59b35484d9f
 DIST libxc-1.2.0.tar.gz 895527 SHA256 ee441c3cde2e2bd87828186aa17f6e4438d17b38634c5d29bb12d3b7554461fb SHA512 3ac0fd07e40db4feb0f0a4ebe1358fdd4de0fff21f6dd369895c658a14cd3bafedbbc374b89f68320401dfcfe16a6230e05403fdaccfcbebb98349ca06593125 WHIRLPOOL 66439bf65a656567c0e52a4ee20b206658a9185bdbd3e045daca00bf01ba0199ccbedea3e5034cf90fbc36dbc04d9666cde8bde46e2577ffd160800f1718bd2a
+DIST libxc-2.0.1.tar.gz 1062846 SHA256 c332f08648ec2bc7ccce83e45a84776215aa5dfebc64fae2a23f2ac546d41ea4 SHA512 c7d87134911fdfd91d985397a3fa990a63cc05d0752f0e2522e41dae0c2f39c43f9bd87ee6eb1972ab92b1aedeefad55a33ad84b1c66032e61ca03c87db02c5b WHIRLPOOL 16a5b999bb60177fde1371421f41f35736af4fcf8df123318ea438ffd34f487dcbadc95124ab9cf6ab2edeadd7983c56e0ca9d84bf528254de1f2a003addd402
diff --git a/sci-libs/libxc/libxc-9999.ebuild b/sci-libs/libxc/libxc-9999.ebuild
index baf29d429..2432915ed 100644
--- a/sci-libs/libxc/libxc-9999.ebuild
+++ b/sci-libs/libxc/libxc-9999.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=4
+EAPI=5
 
 inherit autotools-utils fortran-2 multilib subversion
 
@@ -14,7 +14,7 @@ ESVN_BOOTSTRAP="eautoreconf -i"
 LICENSE="LGPL-3"
 SLOT="0"
 KEYWORDS=""
-IUSE="fortran static-libs"
+IUSE="fortran static-libs -test"
 
 MAKEOPTS+=" -j1"
 
@@ -31,14 +31,21 @@ src_configure() {
 	autotools-utils_src_configure
 }
 
+## Upstream recommends not running the test suite because it requires
+## human expert interpretation to determine whether output is an error or
+## expected under certain circumstances. Nevertheless, experts might want the option.
+# The autotools src_test function modified not to die. Runs emake check in build directory.
+src_test() {
+	debug-print-function ${FUNCNAME} "$@"
+
+	_check_build_dir
+	pushd "${BUILD_DIR}" > /dev/null || die
+	make check || ewarn "Make check failed. See above for details."
+	einfo "emake check done"
+	popd > /dev/null || die
+}
+
 src_install() {
 	autotools-utils_src_install
 
-	if use fortran; then
-		insinto /usr/$(get_libdir)/finclude
-		pushd "${AUTOTOOLS_BUILD_DIR}"/src >/dev/null
-		doins *.mod || die
-		rm -f "${D}"/usr/include/*.mod || die
-		popd >/dev/null
-	fi
 }
diff --git a/sci-libs/mumps/ChangeLog b/sci-libs/mumps/ChangeLog
index 6eba45347..46b5d6d03 100644
--- a/sci-libs/mumps/ChangeLog
+++ b/sci-libs/mumps/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-libs/mumps
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  17 Jun 2013; Justin Bronder <jsbronder@gentoo.org> mumps-4.10.0-r2.ebuild:
+  Don't let openmpi override malloc, works around sandbox issue in #462602
+
 *mumps-4.10.0-r2 (11 Dec 2012)
 
   11 Dec 2012; Sébastien Fabbro <bicatali@gentoo.org> +mumps-4.10.0-r2.ebuild,
diff --git a/sci-libs/mumps/mumps-4.10.0-r2.ebuild b/sci-libs/mumps/mumps-4.10.0-r2.ebuild
index 0d63d75cf..0aa195e30 100644
--- a/sci-libs/mumps/mumps-4.10.0-r2.ebuild
+++ b/sci-libs/mumps/mumps-4.10.0-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -122,6 +122,9 @@ src_configure() {
 }
 
 src_compile() {
+	# Workaround #462602
+	export FAKEROOTKEY=1
+
 	# -j1 because of static archive race
 	emake -j1 alllib PIC="-fPIC"
 	if ! use mpi; then
diff --git a/sci-physics/abinit/ChangeLog b/sci-physics/abinit/ChangeLog
index a4f623b87..2f76ad0d4 100644
--- a/sci-physics/abinit/ChangeLog
+++ b/sci-physics/abinit/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> abinit-7.2.2.ebuild:
+  The dependency on sci-libs/libxc modified to allow for 1.2.0-r1.
+
 *abinit-7.2.2 (17 Jun 2013)
 
   17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> -abinit-7.0.4.ebuild,
diff --git a/sci-physics/abinit/Manifest b/sci-physics/abinit/Manifest
index dee036578..f000cdcd5 100644
--- a/sci-physics/abinit/Manifest
+++ b/sci-physics/abinit/Manifest
@@ -1,2 +1 @@
-DIST abinit-7.0.4.tar.gz 61715030 SHA256 b3ad895b75b92b3ff05e873d42d0b26f6e6113b9de4579966f7b6d1b49d6004e SHA512 8edfe4019c968e6f912d0678fe331fc8a6ce2848f1b16973336d4181d010a776ed1ea2c5500499dac895d9d773d72165e20524705cf8928f91ede873272b0417 WHIRLPOOL 35da8681a68e435b460a11112e6cf6990fdf141d53d5849be45225d50e803e2bfc65cb05e5e576c704411be5734e47ed2e4ccca1fd1689311bd4febea937f0f8
-DIST abinit-7.0.5.tar.gz 61711550 SHA256 b16556aa05448781d872ab18f76ca6446a52be9eeed8d22015a0b63f4adf0f54 SHA512 007292cc7cdf459a5d62e907b29009d9496955952b5f491fa9183a5abb86dbf48020eb435b784d74037e381d65d2255a2b9a130322ee9bfecbff8ca075488ecd WHIRLPOOL 74d83a3a05817eaca402ace1b7ec3c3a6db3697a7ca0166549aee8155edfa2a7c8d516e2ae210a6f0e855f72617d704785bbb10e3a3ee262140964913608a307
+DIST abinit-7.2.2.tar.gz 63683267 SHA256 96f83e3af63e993cb886d9d6cd1c4fac04d50b5e460d5620330441050a909533 SHA512 fbc4898ae4625e12ea22d8f2da63e037eb947320fedf800bd40bd7e0015633ce54b7cb224cee3fc931d015774c51df5f8594ebe26a409cb0325e7a3ab0bf5e4a WHIRLPOOL a149d7ecea9b2b19b94b4e873f1924ce5fe221e037c642d6428727b552dc0c428b288551dda708286995da26080171c385a3ef3ad3766e065073139d4ef0f2e8
diff --git a/sci-physics/abinit/abinit-7.2.2.ebuild b/sci-physics/abinit/abinit-7.2.2.ebuild
index 0a2b49b76..a420f51cf 100644
--- a/sci-physics/abinit/abinit-7.2.2.ebuild
+++ b/sci-physics/abinit/abinit-7.2.2.ebuild
@@ -16,7 +16,7 @@ KEYWORDS="~amd64 ~x86"
 IUSE="cuda cuda-double -debug +etsf_io +fftw +fftw-threads +fox gsl gui +hdf5 libabinit mpi +netcdf openmp python -test +threads -vdwxc"
 
 RDEPEND="~sci-libs/bigdft-abi-1.0.4
-	>=sci-libs/libxc-2.0.1[fortran]
+	>=sci-libs/libxc-1.2.0-r1[fortran]
 	>=sci-physics/atompaw-3.0.1.9-r1[libxc]
 	etsf_io? ( >=sci-libs/etsf_io-1.0.3-r2 )
 	fox? ( >=sci-libs/fox-4.1.2-r2[sax] )
diff --git a/sci-physics/bigdft/ChangeLog b/sci-physics/bigdft/ChangeLog
index 0c32817c1..3e78db982 100644
--- a/sci-physics/bigdft/ChangeLog
+++ b/sci-physics/bigdft/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
+  bigdft-1.7_pre24.ebuild:
+  The dependency on sci-libs/libxc corrected to reflect the recent change in
+  the upgrade of sci-physics/abinit & friends.
+
 *bigdft-1.7_pre24 (17 Jun 2013)
 
   17 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
diff --git a/sci-physics/bigdft/bigdft-1.7_pre24.ebuild b/sci-physics/bigdft/bigdft-1.7_pre24.ebuild
index d74906a74..4a354aaef 100644
--- a/sci-physics/bigdft/bigdft-1.7_pre24.ebuild
+++ b/sci-physics/bigdft/bigdft-1.7_pre24.ebuild
@@ -20,7 +20,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux"
 IUSE="cuda doc etsf_io mpi netcdf openmp opencl test"
 
 RDEPEND="
-	>=sci-libs/libxc-1.0[fortran]
+	>=sci-libs/libxc-1.2.0-r1[fortran]
 	virtual/blas
 	virtual/fortran
 	virtual/lapack
diff --git a/sci-physics/elk/ChangeLog b/sci-physics/elk/ChangeLog
index 28ac97dff..2a837bcdd 100644
--- a/sci-physics/elk/ChangeLog
+++ b/sci-physics/elk/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Jun 2013; Honza Macháček <Hloupy.Honza@centrum.cz> elk-1.4.22.ebuild:
+  The dependency on sci-libs/libxc adapted to its recent change in the upgrade
+  of sci-physics/abinit & friends.
+
   21 Feb 2013; Justin Lecher <jlec@gentoo.org> elk-1.4.22.ebuild:
   Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config;
   add missing dep on virtual/pkgconfig; cleaning of ebuild
diff --git a/sci-physics/elk/elk-1.4.22.ebuild b/sci-physics/elk/elk-1.4.22.ebuild
index ab7cd8dcd..5e99d05d3 100644
--- a/sci-physics/elk/elk-1.4.22.ebuild
+++ b/sci-physics/elk/elk-1.4.22.ebuild
@@ -19,7 +19,7 @@ RDEPEND="
 	lapack? (
 		virtual/blas
 		virtual/lapack )
-	libxc? ( =sci-libs/libxc-1*[fortran] )
+	libxc? ( >=sci-libs/libxc-1.2.0-r1[fortran] )
 	mpi? ( virtual/mpi )"
 DEPEND="${RDEPEND}
 	perl? ( dev-lang/perl )