aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-04-28 19:58:08 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-04-28 19:58:08 +0200
commit94213c11a5931dfd22ce57afdd7a12b9a40fa402 (patch)
treeb2ad2a00e5c6b03f33bc5fe100343a0bfb1e5ef6
parentMerge branch 'master' of ssh://github.com/gentoo-science/sci (diff)
downloadsci-94213c11a5931dfd22ce57afdd7a12b9a40fa402.tar.gz
sci-94213c11a5931dfd22ce57afdd7a12b9a40fa402.tar.bz2
sci-94213c11a5931dfd22ce57afdd7a12b9a40fa402.zip
sci-biology/ncbi-blast+: version bump
Package-Manager: Portage-2.3.5, Repoman-2.3.2
-rw-r--r--sci-biology/ncbi-blast+/Manifest2
-rw-r--r--sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild (renamed from sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild)8
2 files changed, 7 insertions, 3 deletions
diff --git a/sci-biology/ncbi-blast+/Manifest b/sci-biology/ncbi-blast+/Manifest
index b9f25caf1..c0683d041 100644
--- a/sci-biology/ncbi-blast+/Manifest
+++ b/sci-biology/ncbi-blast+/Manifest
@@ -1,3 +1,3 @@
DIST ncbi-blast-2.2.30+-src.tar.gz 18985378 SHA256 26f72d51c81b9497f33b7274109565c36692572faef4d72377f79b7e59910e40 SHA512 501727486aaa384ee5c40368332243ec2e19f22ab88f50c9396b4d33738bde4dbb5d3a1025ae599c1b5f4b4dd3d065ba4d0eb30305f42bfc781c95bbc4140a17 WHIRLPOOL 64f63fdf1502f3d069ffa645b378fb50469d689b70eefbbc85e04bbe4ae896d1e4dfc860a81e2d7c27bc9484eb6a9651ac02ee1d712b9a511d33a9be241154e9
DIST ncbi-blast-2.2.31+-src.tar.gz 18971327 SHA256 f0960e8af2a6021fde6f2513381493641f687453a804239a7e598649b432f8a5 SHA512 2681a4394cc250d1ee545cd85dc962d73b1dbbdd987790a029bf51a58e74cbb08b5c8cf4a02b9b7c95916e3fb0d1613e2ed8631bb7ad683156759421081bb4ca WHIRLPOOL 65e93f87d4c48d8c44cf90c672bdb2035ddb960a388d46f6438c113972392ac23ec0b859a4ecf9c3493c4ee7739dc1f54e545f2758aa889c61d0d95ef9f0a173
-DIST ncbi-blast-2.3.0+-src.tar.gz 19233464 SHA256 7ce8dc62f58141b6cdcd56b55ea3c17bea7a672e6256dfd725e6ef94825e94e9 SHA512 de1002eecf062f3cae61eaec5561a7d8a6118dbcaf243899421a49ebd98f1f7aa54b86d7478445ff6109b0b09645d4969a6ce947a968093d92c41c335ec1c600 WHIRLPOOL 6cec5490251701d8e1e5200144eaa22bfaaa110499b143c832d8f86daf34d214f9871566e65767a44e66fef0b95c01f43a6ab02b985e5b6c3bf25dc3d4a7d3ae
+DIST ncbi-blast-2.6.0+-src.tar.gz 20025526 SHA256 0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996 SHA512 ea6444892a0b10459193d33d243b5960ad206b702e01e94a554a5ebda0291ff45e1ce43479713c23a96eba676b40bb8c57a7ef9dd2118729feef6b2cd98560c6 WHIRLPOOL 1283f8b6eb04e910245963bc2931d2de88bc21128266c28c16ed65b8365e0b12909d3395035c0cf7a19ee7924cea4facc1dd3246175f10dd5e64dcb12a1061a3
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
index 7791cf3e5..6adbefad3 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -239,7 +239,9 @@ src_configure() {
$(use_with mesa mesa "${EPREFIX}/usr")
$(use_with opengl glut "${EPREFIX}/usr")
$(use_with opengl glew "${EPREFIX}/usr")
- $(use_with opengl glew-mx)
+ #
+ # GLEW 2.0 dropped support for this, see https://bugs.gentoo.org/show_bug.cgi?id=611302
+ # $(use_with opengl glew-mx)
$(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
$(use_with wxwidgets wxwidgets-ucs)
$(use_with freetype freetype "${EPREFIX}/usr")
@@ -264,6 +266,8 @@ src_configure() {
$(use_with curl curl "${EPREFIX}/usr")
# $(use_with X x "${EPREFIX}/usr")
# $(use_with X x) # there is no --with-x option
+ # prevent downloading VDB sources from https://github.com/ncbi/ncbi-vdb.git during configure execution
+ --without-vdb
)
# http://www.ncbi.nlm.nih.gov/books/NBK7167/