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| author |   layman <layman@localhost> | 2015-04-12 17:08:32 +0100 |
|---|---|---|
| committer | layman <layman@localhost> | 2015-04-12 17:08:32 +0100 |
| commit | 9732eabf702cbf02c054834a7b36463f48f9e2c7 (patch) | |
| tree | 6efe1c02801d14285ce63bd7ea426aa7030d5c25 | |
| parent | sci-biology/pybedtools: add pybedtools (diff) | |
| download | sci-9732eabf702cbf02c054834a7b36463f48f9e2c7.tar.gz sci-9732eabf702cbf02c054834a7b36463f48f9e2c7.tar.bz2 sci-9732eabf702cbf02c054834a7b36463f48f9e2c7.zip | |
sci-biology/metaseq: add metaseq
Package-Manager: portage-2.2.14-prefix
| -rw-r--r-- | sci-biology/metaseq/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/metaseq/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/metaseq/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/metaseq/metaseq-0.5.3.ebuild | 29 |
4 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/metaseq/ChangeLog b/sci-biology/metaseq/ChangeLog new file mode 100644 index 000000000..4f473fe0a --- /dev/null +++ b/sci-biology/metaseq/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/metaseq +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*metaseq-0.5.3 (12 Apr 2015) + + 12 Apr 2015; Michael Schubert <mschu.dev@gmail.com> +metadata.xml, + +metaseq-0.5.3.ebuild: + sci-biology/metaseq: add metaseq diff --git a/sci-biology/metaseq/Manifest b/sci-biology/metaseq/Manifest new file mode 100644 index 000000000..9a899e4a9 --- /dev/null +++ b/sci-biology/metaseq/Manifest @@ -0,0 +1 @@ +DIST v0.5.3.tar.gz 5233997 SHA256 28d55b7f584100c2c7a47e761a13490bf3a4f19721adc991d767a4e707a3de14 SHA512 18e9aa7260d076c0332674dd99e189964f49a5af689858905f43b8ef4168923c50cc9a42ce53cd0865329663d76863c95eb1c4fb125c62b2e03026bd6f0bccac WHIRLPOOL 9d3257a7f1d88f914a2397d6f189955fce95788a59edc27fa5a7dfe9c5ee9c55dcb4b60a3ee0b432f776dc3edcd6c725591cedf839c691d578e128a6c006eb53 diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml new file mode 100644 index 000000000..b7551a6aa --- /dev/null +++ b/sci-biology/metaseq/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mschu.dev@gmail.com</email> + <name>Michael Schubert</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild new file mode 100644 index 000000000..3c65dbf47 --- /dev/null +++ b/sci-biology/metaseq/metaseq-0.5.3.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data" +HOMEPAGE="http://pythonhosted.org/metaseq/" +SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz" + +LICENSE="MIT" +SLOT="0" +IUSE="" + +DEPEND="dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}] + sci-biology/pybedtools[${PYTHON_USEDEP}] + sci-biology/bx-python[${PYTHON_USEDEP}] + sci-biology/gffutils[${PYTHON_USEDEP}] + sci-biology/samtools[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND}" |