[sci-libs/atlas] Version bump.

3 files changed, 277 insertions, 0 deletions

diff --git a/sci-libs/atlas/ChangeLog b/sci-libs/atlas/ChangeLog
index 6e4024755..097e39aaa 100644
--- a/sci-libs/atlas/ChangeLog
+++ b/sci-libs/atlas/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*atlas-3.9.71 (25 Mar 2012)
+
+  25 Mar 2012; Andrea Arteaga <andyspiros@gmail.com> +atlas-3.9.71.ebuild:
+  Version bump
+
 *atlas-3.9.70 (16 Mar 2012)
 
   16 Mar 2012; Sébastien Fabbro <bicatali@gentoo.org> +atlas-3.9.70.ebuild:
diff --git a/sci-libs/atlas/Manifest b/sci-libs/atlas/Manifest
index 3e6ff9142..62ed25a9a 100644
--- a/sci-libs/atlas/Manifest
+++ b/sci-libs/atlas/Manifest
@@ -1,5 +1,6 @@
 DIST atlas3.8.4.tar.bz2 2534071 RMD160 fa2828468459213fcf3f1ae4fd26671ba32f4776 SHA1 ef92bcbc4bec096b34ed7a0d29119d84c973df0c SHA256 0f7720fb16fa4b8b8a192ea791e57569546db6f5f016cf3caaee30a9d94583bf
 DIST atlas3.9.68.tar.bz2 6156284 SHA256 d3e337840069fcd9baaf0d9a15d5f612cfd803f2937f0b59de6ccbba58e3ae72 SHA512 2540426b9260c59c9db6874a7579845c42c2bb3b9673f690af297d5ee08d31ae85e39e90b8b35ea404fc5e8514689e9978b5ec107d6c60e2c43f386cbd50ed25 WHIRLPOOL 9453c3ee4d26155a2017fd0fa824121427e1776d03871a6a9dde65acec901e3f6b474d77a6d800158d8a8dd223e1d43258c5db0e7eca43304b6f67de21032fd8
 DIST atlas3.9.70.tar.bz2 6273964 SHA256 c84af7a0fd566e1d432eba451b9678cbfecf469e8e5ed5980a2dfa419153bbf3 SHA512 354a510345045219b98cd4eec1d618d12b68e74f7d0e64a9fcdf24b4780953d929b26469f5e4d34a87b592465930c7e60427dd494d046742161230b4bbf5e3e1 WHIRLPOOL b2ee9cccba089017e1431c5fe546aed7466b926af01cad552e32ce81e682c97ece45922fcc1beed3528d278905eb89084c04561ebfba5c1d6f3bdcf2eadf3c94
+DIST atlas3.9.71.tar.bz2 6252318 SHA256 893518e08f8df1d58112078e3b23e82c13cc6c5e977ad31c688a45f2641e35d8 SHA512 9f0bd788902a17b642638eea6dba4031d4166eb3776a8e10526eb8a14c2fdc3a114111156a9b700e512f5fff71cc0cf517707da98d81983ceb2f1027dd68ab7a WHIRLPOOL 41e09c2a74e39d420deaa0cd593ee991343a070eef2c2d8f2bae48d4735eb13ddde98a0f66a0a1b9a0d2ad508313c26e60c5722b3bc37a1473e855fe355697ad
 DIST lapack-3.3.1.tgz 4945204 SHA256 56821ab51c29369a34e5085728f92c549a9aa926f26acf7eeac87b61eed329e4 SHA512 67f6e9e0457101fdf41dd0ce8a692155ab45f26a8d94848c4c99597eab18497faa2c0fbd342d2ad11bc2818693b8decad4f3a63216bdc82901a7a79a8f4d4725 WHIRLPOOL 69c4a780dd396c2c0f22bb3b65be094228abd48877a0488c606a547e9046655bf6623918ae2756121fff244d46fe601599f8898cdc984524e8a80429b2e75414
 DIST lapack-3.4.0.tgz 6127787 SHA256 a7139ef97004d0e3c4c30f1c52d508fd7ae84b5fbaf0dd8e792c167dc306c3e9 SHA512 2dc4994d5d88ea08d5bfa6674c6e6b363cd5669140b201913796efc0fc06d372ced83820e90afe67a6efb4b6b06abb7e727e337c071cd4c0d67354a6b453fadf WHIRLPOOL feaf2429e91a8a65916564fc39594c29e8110fe410fc8e8490fb3ca7a8c4191cad435f85d4ad288510ff48e8b3ad680426c4e00a15488c37eb0f21be7399bcb7
diff --git a/sci-libs/atlas/atlas-3.9.71.ebuild b/sci-libs/atlas/atlas-3.9.71.ebuild
new file mode 100644
index 000000000..b2a010ae2
--- /dev/null
+++ b/sci-libs/atlas/atlas-3.9.71.ebuild
@@ -0,0 +1,271 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+inherit eutils toolchain-funcs fortran-2 versionator alternatives-2
+
+LAPACKP=lapack-3.4.0.tgz
+
+DESCRIPTION="Automatically Tuned Linear Algebra Software"
+HOMEPAGE="http://math-atlas.sourceforge.net/"
+SRC_URI="mirror://sourceforge/math-atlas/${PN}${PV}.tar.bz2
+	fortran? ( lapack? ( http://www.netlib.org/lapack/${LAPACKP} ) )"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
+IUSE="fortran doc lapack static-libs threads"
+
+RDEPEND="fortran? ( virtual/fortran )"
+DEPEND="${RDEPEND}
+	!prefix? ( sys-power/cpufrequtils )"
+
+S="${WORKDIR}/ATLAS"
+
+pkg_setup() {
+	if [[ -n $(type -P cpufreq-info) ]]; then
+		[[ -z $(cpufreq-info -d) ]] && return
+		local ncpu=$(LANG=C cpufreq-info | grep -c "analyzing CPU")
+		local cpu=0
+		while [[ ${cpu} -lt ${ncpu} ]]; do
+			if ! $(LANG=C cpufreq-info -p -c ${cpu} | grep -q performance); then
+				ewarn "CPU $cpu is not set to performance"
+				ewarn "Run cpufreq-set -r -g performance as root"
+				die "${PN} needs all cpu set to performance"
+			fi
+			cpu=$(( cpu + 1 ))
+		done
+	else
+		ewarn "Please make sure to disable CPU throttling completely"
+		ewarn "during the compile of ${PN}. Otherwise, all ${PN}"
+		ewarn "generated timings will be completely random and the"
+		ewarn "performance of the resulting libraries will be degraded"
+		ewarn "considerably."
+	fi
+	use fortran && fortran-2_pkg_setup
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/3.9.39-bfr-overflow.patch
+	epatch "${FILESDIR}"/3.9.63-leaks.patch
+}
+
+src_configure() {
+	atlas_configure() {
+		# hack needed to trick the flaky gcc detection
+		local mycc="$(tc-getCC)"
+		[[ ${mycc} == *gcc* ]] && mycc=gcc
+
+		local myconf=(
+			"--prefix=${ED}/usr"
+			"--libdir=${ED}/usr/$(get_libdir)"
+			"--incdir=${ED}/usr/include"
+			"--cc=${mycc}"
+			"-C ac ${mycc}"
+			"-D c -DWALL"
+			"-F ac '${CFLAGS}'"
+			"-Ss pmake '\$(MAKE) ${MAKEOPTS}'"
+		)
+
+		# OpenMP shown to decreased performance over POSIX threads
+		# (at least in 3.9.x, see atlas-dev mailing list)
+		if use threads; then
+			myconf+=( "-t -1" "-Si omp 0" )
+		else
+			myconf+=( "-t  0" "-Si omp 0" )
+		fi
+
+		if use amd64 || use ppc64 || use sparc; then
+			if [ ${ABI} = amd64 ] || [ ${ABI} = ppc64 ] || [ ${ABI} = sparc64 ] ; then
+				myconf+=( "-b 64" )
+			elif [ ${ABI} = x86 ] || [ ${ABI} = ppc ] || [ ${ABI} = sparc32 ] ; then
+				myconf+=( "-b 32" )
+			else
+				myconf+=( "-b 64" )
+			fi
+		elif use ppc || use x86; then
+			myconf+=( "-b 32" )
+		elif use ia64; then
+			myconf+=( "-b 64" )
+		else #hppa alpha ...
+			myconf+=( "" )
+		fi
+		if use fortran; then
+			myconf+=(
+				"-C if $(tc-getFC)"
+				"-F if '${FFLAGS}'"
+			)
+			if use lapack; then
+				myconf+=(
+					"-Si latune 1"
+					"--with-netlib-lapack-tarfile=${DISTDIR}/${LAPACKP}"
+				)
+			else
+				myconf+=( "-Si latune 0" )
+			fi
+		else
+			myconf+=( "-Si latune 0" "--nof77" )
+		fi
+		local confdir="${S}_${1}"; shift
+		myconf+=( $@ )
+		mkdir "${confdir}" && cd "${confdir}"
+	# for debugging
+		echo ${myconf[@]} > myconf.out
+		"${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed"
+	}
+
+	atlas_configure shared "-Fa alg -fPIC"
+	use static-libs && atlas_configure static
+}
+
+src_compile() {
+	atlas_compile() {
+		pushd "${S}_${1}" > /dev/null
+		# atlas does its own parallel builds
+		emake -j1 build
+		cd lib
+		emake libclapack.a
+		[[ -e libptcblas.a ]] && emake libptclapack.a
+		popd > /dev/null
+	}
+
+	atlas_compile shared
+	use static-libs && atlas_compile static
+}
+
+src_test() {
+	cd "${S}_shared"
+	emake -j1 check time
+}
+
+# transform a static archive into a shared library and install them
+# atlas_install_libs <mylib.a> [extra link flags]
+atlas_install_libs() {
+	local libname=$(basename ${1%.*})
+	einfo "Installing ${libname}"
+	local soname=${libname}.so.$(get_major_version)
+	shift
+	pushd "${S}_shared"/lib > /dev/null
+	${LINK:-$(tc-getCC)} ${LDFLAGS} -shared -Wl,-soname=${soname} \
+		-Wl,--whole-archive ${libname}.a -Wl,--no-whole-archive \
+		"$@" -o ${soname} || die "Creating ${soname} failed"
+	dolib.so ${soname}
+	ln -s ${soname} ${soname%.*}
+	dosym ${soname} /usr/$(get_libdir)/${soname%.*}
+	popd > /dev/null
+	use static-libs && dolib.a "${S}_static"/lib/${libname}.a
+}
+
+# create and install a pkgconfig file
+# atlas_install_pc <libname> <pkg name> [extra link flags]
+atlas_install_pc() {
+	local libname=${1} ; shift
+	local pcname=${1} ; shift
+	cat <<-EOF > ${pcname}.pc
+		prefix=${EPREFIX}/usr
+		libdir=\${prefix}/$(get_libdir)
+		includedir=\${prefix}/include
+		Name: ${pcname}
+		Description: ${PN} ${pcname}
+		Version: ${PV}
+		URL: ${HOMEPAGE}
+		Libs: -L\${libdir} -l${libname} $@
+		Cflags: -I\${includedir}/${PN}
+		${PCREQ}
+	EOF
+	insinto /usr/$(get_libdir)/pkgconfig
+	doins ${pcname}.pc
+}
+
+src_install() {
+	cd "${S}_shared/lib"
+	# rename to avoid collision with other packages
+	local l
+	for l in {,c}{blas,lapack}; do
+		if [[ -e lib${l}.a ]]; then
+			mv lib{,atl}${l}.a
+			use static-libs && mv "${S}"_static/lib/lib{,atl}${l}.a
+		fi
+	done
+
+	[[ -e libptcblas.a ]] && PTLIBS="-lpthread"
+
+	# atlas
+	atlas_install_libs libatlas.a -lm ${PTLIBS}
+
+	# cblas
+	atlas_install_libs libatlcblas.a -lm -L. -latlas
+	atlas_install_pc atlcblas atlas-cblas -lm -latlas
+	alternatives_for cblas atlas 0 \
+		/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas.pc \
+		/usr/include/cblas.h atlas/cblas.h
+
+	# cblas threaded
+	if [[ -e libptcblas.a ]]; then
+		atlas_install_libs libptcblas.a -lm -L. -latlas ${PTLIBS}
+		atlas_install_pc ptcblas atlas-cblas-threads -lm -latlas ${PTLIBS}
+		alternatives_for cblas atlas-threads 0 \
+			/usr/$(get_libdir)/pkgconfig/cblas.pc atlas-cblas-threads.pc \
+			/usr/include/cblas.h atlas/cblas.h
+	fi
+
+	if use lapack; then
+		PCREQ="Requires: cblas"
+		# clapack
+		atlas_install_libs libatlclapack.a -lm -L. -latlas -latlcblas
+		atlas_install_pc atlclapack atlas-clapack -lm -latlas
+
+		# clapack threaded
+		if [[ -e libptclapack.a ]]; then
+			atlas_install_libs libptclapack.a -lm -L. -latlas -lptcblas ${PTLIBS}
+			atlas_install_pc ptclapack atlas-clapack-threads -lm -latlas ${PTLIBS}
+		fi
+	fi
+
+	if use fortran; then
+		LINK=$(tc-getF77) PCREQ=
+		# blas
+		atlas_install_libs libf77blas.a -lm -L. -latlas
+		atlas_install_pc f77blas atlas-blas -lm -latlas
+		alternatives_for blas atlas 0 \
+			/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas.pc
+
+		# blas threaded
+		if [[ -e libptf77blas.a ]]; then
+			atlas_install_libs libptf77blas.a -lm -L. -latlas ${PTLIBS}
+			atlas_install_pc ptf77blas atlas-blas-threads -lm -latlas ${PTLIBS}
+			alternatives_for blas atlas-threads 0 \
+				/usr/$(get_libdir)/pkgconfig/blas.pc atlas-blas-threads.pc
+		fi
+
+		if use lapack; then
+			PCREQ="Requires: blas cblas"
+			# lapack
+			atlas_install_libs libatllapack.a \
+				-lm -L. -latlas -latlcblas -lf77blas
+			atlas_install_pc atllapack atlas-lapack -lm -latlas
+			alternatives_for lapack atlas 0 \
+				/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack.pc
+			# lapack threaded
+			if [[ -e libptlapack.a ]]; then
+				atlas_install_libs libptlapack.a \
+					-lm -L. -latlas -lptcblas -lptf77blas ${PTLIBS}
+				atlas_install_pc ptlapack atlas-lapack-threads \
+					-lm -latlas ${PTLIBS}
+				alternatives_for lapack atlas-threads 0 \
+					/usr/$(get_libdir)/pkgconfig/lapack.pc atlas-lapack-threads.pc
+			fi
+		fi
+	fi
+
+	cd "${S}"
+	insinto /usr/include/${PN}
+	doins include/*.h
+
+	cd "${S}/doc"
+	dodoc INDEX.txt AtlasCredits.txt ChangeLog
+	use doc && dodoc atlas*pdf cblas.pdf cblasqref.pdf
+	use doc && use fortran && dodoc f77blas*pdf
+	use doc && use fortran && use lapack && dodoc lapack*pdf
+}