sci-libs/dealii: version bump to 8.4.1

Package-Manager: portage-2.2.26

3 files changed, 122 insertions, 2 deletions

diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest
index bdeb2bf3f..5fbe9683a 100644
--- a/sci-libs/dealii/Manifest
+++ b/sci-libs/dealii/Manifest
@@ -4,3 +4,5 @@ DIST dealii-8.2.1-offline_documentation.tar.gz 98861605 SHA256 4622e8ef96c5105dc
 DIST dealii-8.2.1.tar.gz 13667634 SHA256 d75674e45fe63cd9fa294460fe45228904d51a68f744dbb99cd7b60720f3b2a0 SHA512 9cd3ed9a4330aa7464ecfe92677fcddae0aadcca7885c898eb8a746caa30fff587ccf5614cec61ffb6b27280c94b423d6370661a1791c601d7abce163502daeb WHIRLPOOL d7b86adcf7dc5dddf63aac4d37be6512aff9889279eb58f9d79cbc5d0c467a1ba50892a08495057f20a3352767f88a42bff7d82f9ba2b5567b02511cb806b7f5
 DIST dealii-8.3.0-offline_documentation.tar.gz 152228920 SHA256 474b1b64a392b1a77b3e628b4c5f83099ed3b4cd5bc87966454645607f2f3851 SHA512 f3ba395204b18b9b8a0e5a1ea0d59260f3ed556d866820c78ed52d9fd16cc4702870eec9bfa0a3e6996696256f6d371d88a9642392eab135291f6a2411038c48 WHIRLPOOL aabcb6b951f1331fbf1cc0cef3f9dc92f8f4c08698f6ddbafff9b5a59d4344bab75346d353cb9b4582e8233230598501d13eecfa021a52e5692fcd3849581ba0
 DIST dealii-8.3.0.tar.gz 13756656 SHA256 4ddf72632eb501e1c814e299f32fc04fd680d6fda9daff58be4209e400e41779 SHA512 bc8aa46e91d3ae600cda8e0069a41a8172845d4e2026c05d361fc47a2780365a1510edbfd04a94a6b509e30b8c153ff41c0abd46403cba1ef134e6898b1f53ca WHIRLPOOL db350cfd43f84405d9fc297299b6015aac5c40ddc8a55991e0f42a3ea0b0375162320c024b7b2441ebf562509149a7c9154cb10ace3c70548aed30c66399d82f
+DIST dealii-8.4.1-offline_documentation.tar.gz 157323925 SHA256 1e64a7fd431bfcb2abb7aaba929c74ce1677d12409c978448184863f66b495de SHA512 be7036fec9ef6c6afe69831c11b2c97ad7ac982033659fbd8297f0c3c83d0f2a2eb4c19b1aa930ff82c47993935aafd779fb954abbc5650bd05e6991a50d404b WHIRLPOOL b496b3ac5b903f7d389d46d1ee60ebbbc4e62afaad9ca6463a70d28bb68091f6dba4bba37c6c2b99482bc2bab5eaccd64feff9d33489ee26dca62cf2c341e727
+DIST dealii-8.4.1.tar.gz 13973053 SHA256 00a0e92d069cdafd216816f1aff460f7dbd48744b0d9e0da193287ebf7d6b3ad SHA512 9a1edc24e4681a3200289beab2d29bd21ec2a0bfbfb0d0bedec691ef53d815ede187a7ee92efdb143b57e58f6768804f8de7c2e40b46546d6074830499998f66 WHIRLPOOL a6595c358eff7aa4875a854c6be4c28abbc3ec3e6f92ff1310f4db36415e2883f9e08201a7b22464d163a053ae6bbbcb827c90f9e48ea86479ee69aa8b0697e4
diff --git a/sci-libs/dealii/dealii-8.4.1.ebuild b/sci-libs/dealii/dealii-8.4.1.ebuild
new file mode 100644
index 000000000..11c2c0c7d
--- /dev/null
+++ b/sci-libs/dealii/dealii-8.4.1.ebuild
@@ -0,0 +1,120 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils eutils multilib
+
+DESCRIPTION="Solving partial differential equations with the finite element method"
+HOMEPAGE="http://www.dealii.org/"
+
+if [[ ${PV} = *9999* ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="git://github.com/dealii/dealii.git"
+	SRC_URI=""
+	KEYWORDS=""
+else
+	MY_PV="${PV//0_rc/rc}"
+	MY_P="${PN}-${MY_PV}"
+	SRC_URI="https://github.com/dealii/dealii/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+		doc? (
+			https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}-offline_documentation.tar.gz
+			-> ${P}-offline_documentation.tar.gz
+			)"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+	S="${WORKDIR}/${PN}-${MY_PV}"
+fi
+
+LICENSE="LGPL-2.1+"
+SLOT="0"
+IUSE="
+	arpack cpu_flags_x86_avx cpu_flags_x86_sse2 c++11 +debug doc +examples
+	hdf5 +lapack metis mpi muparser opencascade netcdf p4est parameter_gui
+	petsc +sparse static-libs +tbb trilinos
+"
+
+# TODO: add slepc use flag once slepc is packaged for gentoo-science
+REQUIRED_USE="
+	p4est? ( mpi )
+	trilinos? ( mpi )"
+
+RDEPEND="dev-libs/boost
+	app-arch/bzip2
+	sys-libs/zlib
+	arpack? ( sci-libs/arpack[mpi=] )
+	hdf5? ( sci-libs/hdf5[mpi=] )
+	lapack? ( virtual/lapack )
+	metis? ( >=sci-libs/parmetis-4 )
+	mpi? ( virtual/mpi )
+	muparser? ( dev-cpp/muParser )
+	netcdf? ( sci-libs/netcdf-cxx:0 )
+	opencascade? ( sci-libs/opencascade:* )
+	p4est? ( sci-libs/p4est[mpi] )
+	parameter_gui? ( dev-qt/qtgui:4 )
+	petsc? ( sci-mathematics/petsc[mpi=] )
+	sparse? ( sci-libs/umfpack )
+	tbb? ( dev-cpp/tbb )
+	trilinos? ( sci-libs/trilinos )"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( app-doc/doxygen[dot] dev-lang/perl )"
+
+src_configure() {
+	# deal.II needs a custom build type:
+	local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release)
+
+	local mycmakeargs=(
+		-DDEAL_II_PACKAGE_VERSION=9999
+		-DDEAL_II_ALLOW_AUTODETECTION=OFF
+		-DDEAL_II_ALLOW_BUNDLED=OFF
+		-DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF
+		-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF
+		-DDEAL_II_LIBRARY_RELDIR="$(get_libdir)"
+		-DDEAL_II_SHARE_RELDIR="share/${PN}"
+		-DDEAL_II_DOCREADME_RELDIR="share/doc/${P}"
+		-DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples"
+		-DDEAL_II_WITH_BZIP2=ON
+		-DDEAL_II_WITH_ZLIB=ON
+		$(cmake-utils_use arpack DEAL_II_WITH_ARPACK)
+		$(cmake-utils_use c++11 DEAL_II_WITH_CXX11)
+		$(cmake-utils_use cpu_flags_x86_avx DEAL_II_HAVE_AVX)
+		$(cmake-utils_use cpu_flags_x86_sse2 DEAL_II_HAVE_SSE2)
+		$(cmake-utils_use doc DEAL_II_COMPONENT_DOCUMENTATION)
+		$(cmake-utils_use examples DEAL_II_COMPONENT_EXAMPLES)
+		$(cmake-utils_use hdf5 DEAL_II_WITH_HDF5)
+		$(cmake-utils_use lapack DEAL_II_WITH_LAPACK)
+		$(cmake-utils_use metis DEAL_II_WITH_METIS)
+		$(cmake-utils_use mpi DEAL_II_WITH_MPI)
+		$(cmake-utils_use muparser DEAL_II_WITH_MUPARSER)
+		$(cmake-utils_use netcdf DEAL_II_WITH_NETCDF)
+		-DOPENCASCADE_DIR="${CASROOT}"
+		$(cmake-utils_use opencascade DEAL_II_WITH_OPENCASCADE)
+		$(cmake-utils_use p4est DEAL_II_WITH_P4EST)
+		$(cmake-utils_use parameter_gui DEAL_II_COMPONENT_PARAMETER_GUI)
+		$(cmake-utils_use petsc DEAL_II_WITH_PETSC)
+		$(cmake-utils_use sparse DEAL_II_WITH_UMFPACK)
+		$(cmake-utils_use !static-libs BUILD_SHARED_LIBS)
+		$(cmake-utils_use static-libs DEAL_II_PREFER_STATIC_LIBS)
+		$(cmake-utils_use tbb DEAL_II_WITH_THREADS)
+		$(cmake-utils_use trilinos DEAL_II_WITH_TRILINOS)
+		)
+	cmake-utils_src_configure
+}
+
+src_install() {
+	if use doc && [[ ${PV} != *9999* ]]; then
+		# copy missing images to the build directory:
+		cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \
+			"${BUILD_DIR}"/doc/doxygen/deal.II || die
+		# replace links:
+		sed -i \
+			's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \
+			"${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed"
+	fi
+	cmake-utils_src_install
+
+	# decompress the installed example sources:
+	use examples && docompress -x /usr/share/doc/${PF}/examples
+}
diff --git a/sci-libs/dealii/dealii-9999.ebuild b/sci-libs/dealii/dealii-9999.ebuild
index b37b9625a..11c2c0c7d 100644
--- a/sci-libs/dealii/dealii-9999.ebuild
+++ b/sci-libs/dealii/dealii-9999.ebuild
@@ -21,8 +21,6 @@ else
 		doc? (
 			https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}-offline_documentation.tar.gz
 			-> ${P}-offline_documentation.tar.gz
-			http://ganymed.iwr.uni-heidelberg.de/~maier/dealii/releases/${MY_P}-offline_documentation.tar.gz
-			-> ${P}-offline_documentation.tar.gz
 			)"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 	S="${WORKDIR}/${PN}-${MY_PV}"