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authorDavid Seifert <soap@gentoo.org>2018-01-10 10:58:38 +0100
committerDavid Seifert <soap@gentoo.org>2018-01-10 10:59:22 +0100
commit9f4aad23ebad4a4cbbf5c94eddd52c0ec59370c7 (patch)
tree8be226984bfd98fb822ac660a31f4a4e3167110a
parentsci-biology/SPAdes: version bump (diff)
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sci-biology/fastx_toolkit: Moved to main tree
-rw-r--r--sci-biology/fastx_toolkit/Manifest1
-rw-r--r--sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild32
-rw-r--r--sci-biology/fastx_toolkit/metadata.xml11
3 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/fastx_toolkit/Manifest b/sci-biology/fastx_toolkit/Manifest
deleted file mode 100644
index abb3cfa..0000000
--- a/sci-biology/fastx_toolkit/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST fastx_toolkit-0.0.14.tar.bz2 543018 BLAKE2B d61456252ada507efd4cc45ff2f0d54f7a6c55b185d41eb5f5accd7e73184b8b80b2c415b38f8e4ccd687ae715191785a89e64f790fe598ba477901c12d514a1 SHA512 e1df1486e853b3ecee71e677cd6e86246a3993174016111eb84910625dc7ec11d37aff75de7ccefad1e019e75fe72050d6529add2116b759d5056b8096286c05
diff --git a/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild b/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild
deleted file mode 100644
index 64feb23..0000000
--- a/sci-biology/fastx_toolkit/fastx_toolkit-0.0.14.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools
-
-DESCRIPTION="Tools for Short Read FASTA/FASTQ file processing"
-HOMEPAGE="http://hannonlab.cshl.edu/fastx_toolkit"
-SRC_URI="https://github.com/agordon/fastx_toolkit/releases/download/"${PV}"/"${P}".tar.bz2"
-
-LICENSE="AGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- dev-perl/PerlIO-gzip
- dev-perl/GDGraph
- sys-apps/sed
- sci-visualization/gnuplot
- sci-biology/libgtextutils"
-
-src_prepare() {
- # remove pointless installation of generic autoconf-archive m4 macros
- # causing file collisions with sys-devel/autoconf-archive
- rm m4/Makefile.am || die
- sed -i -e 's/m4 //g' Makefile.am || die
-
- eautoreconf
-}
diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml
deleted file mode 100644
index 880cea0..0000000
--- a/sci-biology/fastx_toolkit/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">agordon/fastx_toolkit</remote-id>
- </upstream>
-</pkgmetadata>