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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2015-01-15 14:24:36 +0100
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2015-01-15 14:24:36 +0100
commitac04739d49d0354f0daba854886317a455b798ae (patch)
tree4d2a7433545ab9a86ee98cfc275a59d929594f89
parentsci-biology/edena: new package (diff)
downloadsci-ac04739d49d0354f0daba854886317a455b798ae.tar.gz
sci-ac04739d49d0354f0daba854886317a455b798ae.tar.bz2
sci-ac04739d49d0354f0daba854886317a455b798ae.zip
sci-biology/epga: new package; no LICENSE file
-rw-r--r--sci-biology/epga/ChangeLog10
-rw-r--r--sci-biology/epga/epga-9999.ebuild36
-rw-r--r--sci-biology/epga/metadata.xml9
3 files changed, 55 insertions, 0 deletions
diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
new file mode 100644
index 000000000..5d20948a1
--- /dev/null
+++ b/sci-biology/epga/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/epga
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*epga-9999 (15 Jan 2015)
+
+ 15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +epga-9999.ebuild,
+ +metadata.xml:
+ new package; no LICENSE file
+
diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
new file mode 100644
index 000000000..63a50e614
--- /dev/null
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "9999" ] && inherit git-2
+
+inherit toolchain-funcs
+
+DESCRIPTION="De novo assembler using distribution of reads and insert size"
+HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
+if [ "$PV" == "9999" ]; then
+ EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
+ KEYWORDS=""
+else
+ SRC_URI=""
+ KEYWORDS=""
+fi
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_compile(){
+ $(tc-getCXX) ${CFLAGS} main.cpp -o epga -lpthread
+}
+
+src_install(){
+ dobin epga
+ dodoc README.md
+}
diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
new file mode 100644
index 000000000..2bc893037
--- /dev/null
+++ b/sci-biology/epga/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>