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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-31 23:57:29 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-31 23:57:29 +0200 |
| commit | b4e77f4cf03a055b7af8a2566bc1252590da2662 (patch) | |
| tree | 5f3fa7ed349dbebb61434ba3130dcdb766d46174 | |
| parent | sci-biology/cross_genome: polish ebuild syntax (diff) | |
| download | sci-b4e77f4cf03a055b7af8a2566bc1252590da2662.tar.gz sci-b4e77f4cf03a055b7af8a2566bc1252590da2662.tar.bz2 sci-b4e77f4cf03a055b7af8a2566bc1252590da2662.zip | |
sci-biology/karect: new package
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/karect/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/karect/karect-1.0.0.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/karect/metadata.xml | 12 |
3 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/karect/Manifest b/sci-biology/karect/Manifest new file mode 100644 index 000000000..2360fdf9f --- /dev/null +++ b/sci-biology/karect/Manifest @@ -0,0 +1 @@ +DIST karect-1.0.0.tar.gz 239445 SHA256 9d2a65af2952c994705ea196cb580511b6f28cff6722880c83cebd9fb5b25da2 SHA512 c833a862c15027eaf84eff7ddf1cf36a369fbd94bd44ab596fcee89e402e1517ba3ef2646591365d273f98f1e3f13b6ad990f73660e440f0a45c87b84a08491c WHIRLPOOL f7846ae0eae3fea4ce01c53c1203e6b290f2007bcda14117d532a475486627b15a02c5a486b80187c1b62d4faba6b9cf8a02d177c3f4c059e0d457aa220f31e3 diff --git a/sci-biology/karect/karect-1.0.0.ebuild b/sci-biology/karect/karect-1.0.0.ebuild new file mode 100644 index 000000000..91899101e --- /dev/null +++ b/sci-biology/karect/karect-1.0.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="Correct mismatches and indels of raw reads incl. paired-end" +HOMEPAGE="https://github.com/aminallam/karect + http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract" +SRC_URI="https://codeload.github.com/aminallam/karect/legacy.tar.gz/master -> karect-1.0.0.tar.gz" +# actually fetches aminallam-karect-v1.0-0-gba3ad54.tar.gz +# https://github.com/aminallam/karect.git + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/aminallam-karect-ba3ad54/ + +src_compile(){ + $(tc-getCXX) ${CXXFLAGS} -pthread -lpthread karect.cpp -o karect || die +} + +src_install(){ + dobin karect + dodoc karect_manual.pdf README README.md +} diff --git a/sci-biology/karect/metadata.xml b/sci-biology/karect/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/karect/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |