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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-12 09:27:37 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-04-12 09:27:37 +0200 |
| commit | b953ee4a8586fae91d8457b31b8baea000160533 (patch) | |
| tree | 65236afb6344990305cb68c16ab942c763607b34 | |
| parent | dev-python/absl-py: new package, needed by sci-libs/tensorflow (diff) | |
| download | sci-b953ee4a8586fae91d8457b31b8baea000160533.tar.gz sci-b953ee4a8586fae91d8457b31b8baea000160533.tar.bz2 sci-b953ee4a8586fae91d8457b31b8baea000160533.zip | |
sci-biology/genometools: bump 1.5.7 to 1.5.9
https://github.com/genometools/genometools/blob/master/CHANGELOG
changes in version 1.5.9 (2016-07-21)
- bugfixes and cleanups
- update MD5 module to upstream version 1.2
- set verbatim dates in documentation files
- add support for GCC 6
- gtlua: complete GtRegionMapping bindings
- extend wording options for speck matchers
- add tabular output format for speck
- make unit tests compatible with Python 2.6
- improvements on `gt seed_extend'
- improve compatibility with Ruby <1.9.2
- several changes to build system (verbosity etc.)
- allow to sort sequences by header (`gt seqorder')
changes in version 1.5.8 (2016-01-06)
- bugfixes and cleanups
- change number of spaces in GFF3 header
- improve documentation of 'gt gff3 -checkids'
- change GenBank and EMBL parsers to name sequences after LOCUS/ID fields
- add Python 3 support for Python bindings
- make build reproducible
- allow speck templates to be given as files
- updated genetic code table to most recent NCBI revision
Package-Manager: Portage-2.3.27, Repoman-2.3.9
| -rw-r--r-- | sci-biology/genometools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/genometools/genometools-1.5.9.ebuild (renamed from sci-biology/genometools/genometools-1.5.7.ebuild) | 6 |
2 files changed, 4 insertions, 4 deletions
diff --git a/sci-biology/genometools/Manifest b/sci-biology/genometools/Manifest index 6549d8165..ab58b8ad3 100644 --- a/sci-biology/genometools/Manifest +++ b/sci-biology/genometools/Manifest @@ -1 +1 @@ -DIST genometools-1.5.7.tar.gz 12929462 BLAKE2B 84811c71769e60dd7e8bc83ccf574be95ebc01e7fe3162224d8cdf2a438d34ed1ef82c6fffbc71f157be254d42f415a25cd7091e51d27a15a3b08e990def9c7d SHA512 1b84b0118a3befce520c57140f0b8a1920c5cc638180e06f8881d466c58fd74ba0a72e432efada0119b4f82d55a3f87b4feb3bf280b8c968e5178f2433eaca87 +DIST genometools-1.5.9.tar.gz 13344855 BLAKE2B 0cc62fbd460456159c5c2e5808707574a3fdbc973c64eeea370258b94048952d1a0b4389f3d0ae09b3d73641712c97c785293c7e9704dcb77ce86050ec5a105e SHA512 366b5c5d9fb7fd0a910a7d6d34912c07e65c88fb2acf3a911e49de909a345fb891b9f5433accf6738e99fefe390c42f2429f9c262ae3368313d2226680168690 diff --git a/sci-biology/genometools/genometools-1.5.7.ebuild b/sci-biology/genometools/genometools-1.5.9.ebuild index 70682d2ee..23fe474e2 100644 --- a/sci-biology/genometools/genometools-1.5.7.ebuild +++ b/sci-biology/genometools/genometools-1.5.9.ebuild @@ -1,15 +1,15 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 -DESCRIPTION="Tools for bioinformatics (notably Tallymer, Readjoiner, gff3validator)" +DESCRIPTION="Tools for bioinformatics (Tallymer, Readjoiner, gff3validator, ...)" HOMEPAGE="http://genometools.org" SRC_URI="http://genometools.org/pub/${P}.tar.gz" LICENSE="ICS" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="~amd64 ~x86" IUSE="" DEPEND=" |