InCvs

4 files changed, 0 insertions, 115 deletions

diff --git a/sci-chemistry/caver/ChangeLog b/sci-chemistry/caver/ChangeLog
deleted file mode 100644
index 9ccff5c7c..000000000
--- a/sci-chemistry/caver/ChangeLog
+++ /dev/null
@@ -1,60 +0,0 @@
-# ChangeLog for sci-chemistry/caver
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*caver-2.0.003 (01 Jul 2009)
-
-  01 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
-  +caver-2.0.003.ebuild, +metadata.xml:
-  complete change in way you can use caver based on java and only as pymol
-  plugin available
-
-  06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
-  Add USE flag description to metadata wrt GLEP 56.
-
-  15 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> caver-0.99.2.ebuild,
-  caver-0.99.4.ebuild:
-  QA: Removed illegal use of ${ROOT}. Bug #168043
-
-  22 Feb 2007; Jeff Gardner <je_fro@gentoo.org> Manifest:
-  Updating for manifest2.
-
-  06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -caver-0.99.1.ebuild:
-  QA: Removed unused versions.
-
-  20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
-  (#148281) Change herd to sci-chemistry from sci.
-
-  20 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; caver-0.99.2.ebuild:
-  Stable on x86/ppc.
-
-*caver-0.99.4 (18 Aug 2006)
-
-  18 Aug 2006; Olivier Fisette <ribosome@gentoo.org>
-  +files/caver-0.99.4-001.patch, +caver-0.99.4.ebuild:
-  New upstream version; thanks to Richard Daigle <rdaigle@rsvs.ulaval.ca> for
-  his work (fixes bug #144329). Added pdb2caver script; thanks to Rossen
-  Apostolov <rossen@protein.osaka-u.ac.jp> for his work (fixes bug #141549).
-  Added man page. Ebuild clean-up.
-
-  05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
-  Remove myself as maintainer, anyone feel free to work on this, although I'll
-  continue to do so as well.
-
-  07 Jul 2006; Donnie Berkholz <spyderous@gentoo.org>; metadata.xml:
-  Update to my new email address.
-
-*caver-0.99.2 (14 May 2006)
-
-  14 May 2006; Donnie Berkholz <dberkholz@gentoo.org>; +caver-0.99.2.ebuild:
-  Bump. This version does a much better job of finding stuff, and the pymol
-  plugin's a lot more capable.
-
-*caver-0.99.1 (20 Dec 2005)
-
-  20 Dec 2005; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
-  +caver-0.99.1.ebuild:
-  New package providing rapid, accurate and fully automated calculation of
-  pathways leading from buried cavities to outside solvent in static and
-  dynamic protein structures. Also has a neat PyMol plugin.
-
diff --git a/sci-chemistry/caver/Manifest b/sci-chemistry/caver/Manifest
deleted file mode 100644
index bc53fc9e0..000000000
--- a/sci-chemistry/caver/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST caver2_0-v003_pymol_plugin.zip 3605820 RMD160 ab937f9090c31dbf078b08fdf582d2cad7717658 SHA1 b18ae1b011c906fe7fe5d94f6ee3bac185c352c6 SHA256 af82aff17103d31385b401edd4fc2c5da91d5ddef7d96b41e0b6e37b5adaef08
-EBUILD caver-2.0.003.ebuild 1268 RMD160 7631f6de18aafc0c29feb334ab4a47a439023b90 SHA1 dfd66fab4465255a335c9a1e464b484d4948a8f1 SHA256 3380bf6a701134454e0a3d91bdc5ae4b1a986ad98d08bfc0074dafc2597c609a
-MISC ChangeLog 2242 RMD160 b70ff6eff9187b16f14e748196541ca358c02416 SHA1 6eeb262b6ab5faff54d3504a98b6b93ab6505881 SHA256 347e1114759a69d8970ec2fd1f30c246826f416cb346c73112c5b7c052ff8d5d
-MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
diff --git a/sci-chemistry/caver/caver-2.0.003.ebuild b/sci-chemistry/caver/caver-2.0.003.ebuild
deleted file mode 100644
index 6c9c29aec..000000000
--- a/sci-chemistry/caver/caver-2.0.003.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-inherit multilib python eutils versionator java-utils-2
-
-MY_PV="$(replace_version_separator 2 -v $(replace_version_separator 1 _ ${PV}))"
-MY_P="${PN}${MY_PV}_pymol_plugin"
-
-DESCRIPTION="Calculation of pathways from buried cavities to outside solvent in protein structures"
-HOMEPAGE="http://loschmidt.chemi.muni.cz/caver/"
-SRC_URI="${MY_P}.zip"
-
-LICENSE="CAVER"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-	>=virtual/jre-1.6
-	sci-chemistry/pymol"
-DEPEND="app-arch/unzip"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}/Caver${MY_PV}"/linux_mac
-
-pkg_nofetch() {
-	einfo "Download ${MY_P}.tar.gz"
-	einfo "from ${HOMEPAGE}. This requires registration."
-	einfo "Place tarballs in ${DISTDIR}."
-}
-
-src_install() {
-	java-pkg_dojar Caver$(replace_all_version_separators _ ${PV})/*.jar
-
-	java-pkg_jarinto /usr/share/${PN}/lib/lib/
-	java-pkg_dojar Caver$(replace_all_version_separators _ ${PV})/lib/*.jar
-
-	sed \
-		-e "s:directory/where/jar/with/plugin/is/located:/usr/share/${PN}/lib/:g" \
-		-i Caver$(replace_all_version_separators _ ${PV}).py || die
-
-	insinto $(python_get_sitedir)/pmg_tk/startup/
-	doins Caver$(replace_all_version_separators _ ${PV}).py || die
-}
diff --git a/sci-chemistry/caver/metadata.xml b/sci-chemistry/caver/metadata.xml
deleted file mode 100644
index 9ac9ffdb3..000000000
--- a/sci-chemistry/caver/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-chemistry</herd>
-</pkgmetadata>