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| author |   Andrey Kislyuk <kislyuk@devel.(none)> | 2009-04-01 10:20:10 -0400 |
|---|---|---|
| committer | Andrey Kislyuk <kislyuk@devel.(none)> | 2009-04-01 10:20:10 -0400 |
| commit | bbcbb4ad4d434b8e7e97f8d5a3ec8a3ef8d3793e (patch) | |
| tree | b2b69cd97aa5f5e9648612dec3ca43b7c4b086d5 | |
| parent | New license signalp for package sci-biology/signalp (diff) | |
| download | sci-bbcbb4ad4d434b8e7e97f8d5a3ec8a3ef8d3793e.tar.gz sci-bbcbb4ad4d434b8e7e97f8d5a3ec8a3ef8d3793e.tar.bz2 sci-bbcbb4ad4d434b8e7e97f8d5a3ec8a3ef8d3793e.zip | |
New package sci-biology/signalp
| -rw-r--r-- | sci-biology/signalp/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/signalp/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/signalp/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/signalp/signalp-3.0.ebuild | 47 |
4 files changed, 65 insertions, 0 deletions
diff --git a/sci-biology/signalp/ChangeLog b/sci-biology/signalp/ChangeLog new file mode 100644 index 000000000..723568360 --- /dev/null +++ b/sci-biology/signalp/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/signalp +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 01 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/signalp, ebuild written by me + diff --git a/sci-biology/signalp/Manifest b/sci-biology/signalp/Manifest new file mode 100644 index 000000000..e7654de92 --- /dev/null +++ b/sci-biology/signalp/Manifest @@ -0,0 +1,2 @@ +DIST signalp-3.0.Linux.tar.Z 1216617 RMD160 9b7ec647d015d5b0c30eef7034f3434befc88f10 SHA1 65e1a277ae03fb61b69bfef82782dd8e9f60fc93 SHA256 260c2e5bd945b386e833a7b7326cff6d7332302868e99c0aeae306212047c0c2 +EBUILD signalp-3.0.ebuild 1081 RMD160 8eb163d413b3a10fed3bd34cc7e624791ed27f7f SHA1 071eb95b793bd49e4aaacc87891175b9319c22f9 SHA256 4b5a6c0c8fe56144a1b42a3fe366c7504e205e1a3e590ef1d35d1d2bb5c90a36 diff --git a/sci-biology/signalp/metadata.xml b/sci-biology/signalp/metadata.xml new file mode 100644 index 000000000..3302123e5 --- /dev/null +++ b/sci-biology/signalp/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/signalp/signalp-3.0.ebuild b/sci-biology/signalp/signalp-3.0.ebuild new file mode 100644 index 000000000..7f84fb9a8 --- /dev/null +++ b/sci-biology/signalp/signalp-3.0.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.1 2008/08/26 16:33:07 weaver Exp $ + +EAPI="2" + +DESCRIPTION="Prediction of signal peptide cleavage sites in amino acid sequences" +HOMEPAGE="http://www.cbs.dtu.dk/services/SignalP/" +SRC_URI="${P}.Linux.tar.Z" + +LICENSE="signalp" +SLOT="0" +IUSE="gnuplot" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="gnuplot? ( + sci-visualization/gnuplot + media-libs/netpbm )" + +RESTRICT="fetch strip" + +pkg_nofetch() { + einfo "Please visit ${HOMEPAGE} and obtain the file" + einfo "\"${SRC_URI}\", then place it in ${DISTDIR}" +} + +src_unpack() { + unpack ${A} + sed -i -e '/SIGNALP=/ s/\/usr//' \ + -e '/TMPDIR=/ s/$SIGNALP//' "${S}/signalp" || die + sed -i 's/nawk/gawk/' "${S}"/bin/* || die +} + +src_install() { + dobin signalp || die + insinto /opt/${P} + doins -r bin hmm how mod syn* test + exeinto /opt/${P}/bin + doexe bin/* + exeinto /opt/${P}/hmm + doexe hmm/* + exeinto /opt/${P}/how + doexe how/* + doman signalp.1 + dodoc *readme +} |