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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-05-15 17:56:39 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-05-15 17:56:39 +0200
commitbcdbe7d68fad5b1056f370020f236e543952ee4f (patch)
treec168079df400b1a53a7dd0c8639e5626b1dc91a9
parentdev-lang/yaggo: remove doubbed '/usr' (diff)
downloadsci-bcdbe7d68fad5b1056f370020f236e543952ee4f.zip
sci-bcdbe7d68fad5b1056f370020f236e543952ee4f.tar.gz
sci-bcdbe7d68fad5b1056f370020f236e543952ee4f.tar.bz2
sci-biology/jellyfish: point SRC_URI to proper tarball, drop yaggo DEPENDency
This tarball really doe snot need yaggo for building. See for whole discussion: https://github.com/gmarcais/Jellyfish/issues/87 Package-Manager: Portage-2.3.5, Repoman-2.3.2
-rw-r--r--sci-biology/jellyfish/Manifest2
-rw-r--r--sci-biology/jellyfish/jellyfish-2.2.6.ebuild6
2 files changed, 3 insertions, 5 deletions
diff --git a/sci-biology/jellyfish/Manifest b/sci-biology/jellyfish/Manifest
index e66d33c..ef84f92 100644
--- a/sci-biology/jellyfish/Manifest
+++ b/sci-biology/jellyfish/Manifest
@@ -2,5 +2,5 @@ DIST JellyfishUserGuide.pdf 142367 SHA256 6f4365f1839b0370fff50fcd25ffcf2dad4192
DIST jellyfish-1.1.11.tar.gz 1067138 SHA256 496645d96b08ba35db1f856d857a159798c73cbc1eccb852ef1b253d1678c8e2 SHA512 aea7373e5ffb9deba7e164425bd7d4219d9be1e48ca666ff41e70bbc77026bc581273fb5a07c47894e2b31dd1339d4f1bc1a7b0501f10a482353ecde082eed1a WHIRLPOOL d2f31e39c1d4ce4fab78abd33c62c79bf950fdfab4f5283713e67deab8e1dabc3fd1c6cf09de964a6707793426abca24c05afe0dcf5365e04ae97dda15da2040
DIST jellyfish-2.1.3.tar.gz 955773 SHA256 00530abd01c1253646f29fa4554e96fd31148ed92402940e6f357bd5cab38e9b SHA512 2b6fea6c2686de7b568988543d5a9466676eb17252ecce3243b0dc7e3c833aed02ae6570749df58c2921289db0167b39848ccd80eb3cc568cdbaa0045114b702 WHIRLPOOL 4a1e6568932db0cc4773e89e4b8f049e96ed929723ffd518ce7e0ed12bd29041d0774fba1069251a336e448dd75703a350917ffc3db5a35f2cfac828572da566
DIST jellyfish-2.1.4.tar.gz 958038 SHA256 c4e692170d33efa9e6e4f0b134d8e257fb802832af17fdc53ac468bf8f0f29a5 SHA512 28bbaf6ed5c69caec24a09ceb2dfa99b160f3a9c2764d3f30ab205374a6f17dfc5c6d7405e75fd5161882350db160442a91568dd65ea9851e8cb74eb71f25742 WHIRLPOOL c588f4642ff0474e0565f63d2c17db03b90fa302dff9c678766e589142bc9f71a0b48e2088b24b2df15955cae85ab43aaa1ae79066113a144c8ee8bfa75594f3
-DIST jellyfish-2.2.6.tar.gz 660858 SHA256 800bc60aaec273dc04296ee7493e714457f2fe88551f76693e5d9f9a679dd35e SHA512 7d61d823feaaab05fbb43eaca22823a988bd05da318431e74092b42c7e33ce39f387ac15db30906341f084223b7c2726e199592555aea4b21a5b517e8d0c08f9 WHIRLPOOL a10bbafc2b6cf461a4d9256f03891080eef7353508ab0382d3ccab5823f327c89045b2c7393794fd7938c0eb0027304f5c2cc425ccdfca52c441a267d72eac72
+DIST jellyfish-2.2.6.tar.gz 1082535 SHA256 4532fb003a0494f6473bb97d52467904f631b94f7f9afb0d45b398f6c413692e SHA512 c3320facbbad1c6f2aede2edd7d2574bbff0e5a7f655d8b0224e511f07a319c4682adc1576a189367a546011c43d79f7b01474580dcc9c44f8e087397b475056 WHIRLPOOL e548b601d66f273f3972671ee91819ee1701bc5bba8980ee2b4e64bd4e27adcb8b1fd8b9ab0a8c3658904fb84ab28c8ebb909f6fd4c6ac990bb77aeeb5a65f05
DIST jellyfish-manual-1.1.pdf 241464 SHA256 60738f790ba50baeba04de60fdc3f620fe670d3067501d472c7b42a401600c88 SHA512 b697c51af5bd85b779fea4f03772ac8e21713f906773350931a7d67adecb4268b051e766173122ad2ba9d168235f534ff6eaa070496d6318cf8a76c8690ab61c WHIRLPOOL 01b0fff7373b40b125be3b5d44bc0af62704e84e449943235cc8b8331ff73c6d5d4be4e69040d8bc54ae1e12e377cbe4fd66108b7fcee8379d69568e8809bb5c
diff --git a/sci-biology/jellyfish/jellyfish-2.2.6.ebuild b/sci-biology/jellyfish/jellyfish-2.2.6.ebuild
index 6c3ce94..af91bd8 100644
--- a/sci-biology/jellyfish/jellyfish-2.2.6.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.6.ebuild
@@ -7,7 +7,7 @@ inherit eutils flag-o-matic autotools
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html"
-SRC_URI="https://github.com/gmarcais/Jellyfish/archive/v2.2.6.tar.gz -> ${P}.tar.gz
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz
ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf"
# older version is hidden in trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
@@ -17,12 +17,10 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="cpu_flags_x86_sse"
-RDEPEND="dev-lang/yaggo"
+RDEPEND=""
DEPEND="${RDEPEND}
virtual/pkgconfig"
-S="${WORKDIR}/Jellyfish-${PV}"
-
src_prepare(){
eautoreconf
default