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| author |   Horea Christian <chr@chymera.eu> | 2020-09-27 05:18:53 -0400 |
|---|---|---|
| committer | Horea Christian <chr@chymera.eu> | 2020-09-27 05:18:53 -0400 |
| commit | ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1 (patch) | |
| tree | c722c020b8caf6eb1abd69b4e1f62d4a31437bc0 | |
| parent | sci-biology/lastz: updated KEYWORDS (diff) | |
| download | sci-ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1.tar.gz sci-ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1.tar.bz2 sci-ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1.zip | |
sci-biology/ampliconnoise: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>
| -rw-r--r-- | sci-biology/ampliconnoise/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild | 43 | ||||
| -rw-r--r-- | sci-biology/ampliconnoise/metadata.xml | 12 |
3 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/ampliconnoise/Manifest b/sci-biology/ampliconnoise/Manifest deleted file mode 100644 index 6b910f882..000000000 --- a/sci-biology/ampliconnoise/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST AmpliconNoiseV1.27.tar.gz 1379908 BLAKE2B 2f02b031902488e5af144203602d515ef2a8659375db923f6d9961c670c20fb7a9683e65a7765c05a2d45f14d6f56fd791eea627a3713c1cef530cb3d23c0a0a SHA512 71d1f3c7cd890844b0109f35e5f299b41245e4cd0b7026f4a062d378706942537214979b208e5c25e00d6fb60111c5b1f17a21bd3cb8128a6a2c5854cc5d83a5 -DIST DiversityEstimates.tar.gz 35625 BLAKE2B 7d4afc13917643e5c15cf7bfeb496fc0f22c037948744f7504e8d67fc46ebab2994c1af443ad8907cf5e9737092192058658e1eec9d000b2b0a1b4b45ffc64a6 SHA512 81cd24ac3533a982555f8e4a0dfdc61c5fe6340892bbfad44babd801fe502f90ba68dedb938d881fc38d8e809cbe4a300d2218583f5e495c28c572726c777165 -DIST TutorialV1.22.tar.gz 31274115 BLAKE2B 2d6a7b3b47d7093021de4fb1fd5f47429e3059cb4770f352cc56b8beb23c6d310b4b6524820f3e76b5af8994f2ffebbc803c061554d9ec5f8da4848cbf78cd93 SHA512 73f67df1f0f2e6f0fc95a626ef4cbc002449aba62a1b1c0f1058347c48ccd39619fd6748fc109f2541a7e87b595e88ec491289dfba8e8b23c5fa06821bf3d660 diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild deleted file mode 100644 index 5555cf4c6..000000000 --- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Noise removal from pyrosequenced amplicons" -HOMEPAGE="http://code.google.com/p/ampliconnoise/" -SRC_URI=" - http://ampliconnoise.googlecode.com/files/AmpliconNoiseV${PV}.tar.gz - http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz - http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="" -IUSE="mpi" -RDEPEND=" - mpi? ( virtual/mpi ) - sci-libs/gsl - sci-biology/mafft - sci-biology/usearch-bin - dev-haskell/biosff || ( sci-biology/flower )" - # sci-biology/flower::haskell installs renamed binaries to avoid file collision - # unfortunately flower executable from the two packages - # dev-haskell/biosff::science vs. sci-biology/flower::haskell - # do not offer same cmdline options (upstream did not sync the two packages) - -S="${WORKDIR}/AmpliconNoiseV1.27" - -src_compile(){ - # FIXME: the Makefile forcibly calls 'mpicc' - emake - cd ../DiversityEstimates || die - emake -} - -src_install(){ - default - dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf - mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die - insinto /usr/share/"${PN}"/scripts - doins Scripts/*.pl Scripts/*.sh -} diff --git a/sci-biology/ampliconnoise/metadata.xml b/sci-biology/ampliconnoise/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/ampliconnoise/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |