aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-05-15 23:14:04 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-05-15 23:14:04 +0200
commitf667c44afb6544667c0ba8fadb3d2f70fadf08ad (patch)
tree2077f952251fab2b4f5e5843340117dd40265943
parentsci-biology/quorum: improve DESCRIPTION text (diff)
downloadsci-f667c44afb6544667c0ba8fadb3d2f70fadf08ad.zip
sci-f667c44afb6544667c0ba8fadb3d2f70fadf08ad.tar.gz
sci-f667c44afb6544667c0ba8fadb3d2f70fadf08ad.tar.bz2
sci-biology/SOAPdenovo2: new package
Does not respect CFLAGS, compile fails Package-Manager: Portage-2.3.5, Repoman-2.3.2
-rw-r--r--sci-biology/SOAPdenovo2/Manifest1
-rw-r--r--sci-biology/SOAPdenovo2/SOAPdenovo2-240.ebuild20
-rw-r--r--sci-biology/SOAPdenovo2/metadata.xml12
3 files changed, 33 insertions, 0 deletions
diff --git a/sci-biology/SOAPdenovo2/Manifest b/sci-biology/SOAPdenovo2/Manifest
new file mode 100644
index 0000000..02b7d47
--- /dev/null
+++ b/sci-biology/SOAPdenovo2/Manifest
@@ -0,0 +1 @@
+DIST SOAPdenovo2-src-r240.tgz 1539853 SHA256 b58fdb9b14766a122992d23dba5e91bd733c86e0062b432181aa5c1e7f052bb7 SHA512 1e420ba7526887d8a390a1ea6dce369aee428d8cd2f11b1725a32b971ddd7686180012b10723803a5c5053605141a999379acf06cf8468ac462424fed78e4ff2 WHIRLPOOL 819106c2cbc75401944b3358568a4f9c3a2df5bc472332e337ba493a6216c0383a01231427d4547a12de150a73be2551f44468a32fe22fb1349a5416f9dbe69c
diff --git a/sci-biology/SOAPdenovo2/SOAPdenovo2-240.ebuild b/sci-biology/SOAPdenovo2/SOAPdenovo2-240.ebuild
new file mode 100644
index 0000000..cfd5749
--- /dev/null
+++ b/sci-biology/SOAPdenovo2/SOAPdenovo2-240.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Whole genome shotgun assembler (sparse de Bruijn graph)"
+HOMEPAGE="https://sourceforge.net/projects/soapdenovo2
+ https://github.com/aquaskyline/SOAPdenovo2
+ http://gigascience.biomedcentral.com/articles/10.1186/2047-217X-1-18"
+SRC_URI="https://sourceforge.net/projects/soapdenovo2/files/${PN}/src/r${PV}/${PN}-src-r${PV}.tgz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"-src-r"${PV}"
diff --git a/sci-biology/SOAPdenovo2/metadata.xml b/sci-biology/SOAPdenovo2/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/SOAPdenovo2/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>