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authorMartin Mokrejs <mmokrejs@fold.natur.cuni.cz>2019-03-25 12:08:21 +0100
committerMartin Mokrejs <mmokrejs@fold.natur.cuni.cz>2019-03-25 12:08:21 +0100
commit6d3f8d736bf1a9653f516c3e959a97948c61f843 (patch)
treec953f0d74b41143b478467aca91f76fe41692e20 /dev-java
parentDrop BSD-2 license of sci-biology/tablet (diff)
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dev-java/htsjdk: 2.3.0 which was the last using Apache ant
Bump to EAPI7 Building does not work since sandbox has now no network access. Downloading https://services.gradle.org/distributions/gradle-5.2.1-bin.zip Exception in thread "main" java.net.SocketException: Network is unreachable (connect failed) htsjdk calls some `gradlew` wrapper so the recent ebuilds need more work to use dev-java/gradle-bin package. Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Diffstat (limited to 'dev-java')
-rw-r--r--dev-java/htsjdk/Manifest4
-rw-r--r--dev-java/htsjdk/htsjdk-2.1.0.ebuild4
-rw-r--r--dev-java/htsjdk/htsjdk-2.19.0.ebuild (renamed from dev-java/htsjdk/htsjdk-2.5.1.ebuild)7
-rw-r--r--dev-java/htsjdk/htsjdk-2.3.0.ebuild (renamed from dev-java/htsjdk/htsjdk-2.2.2.ebuild)4
-rw-r--r--dev-java/htsjdk/htsjdk-9999.ebuild7
5 files changed, 14 insertions, 12 deletions
diff --git a/dev-java/htsjdk/Manifest b/dev-java/htsjdk/Manifest
index c6e15310d..b9e92b927 100644
--- a/dev-java/htsjdk/Manifest
+++ b/dev-java/htsjdk/Manifest
@@ -1,3 +1,3 @@
DIST htsjdk-2.1.0.tar.gz 11134251 BLAKE2B 3578f1576fd1e52482f8f4068026cd10bfcd870da8cbfbfa5d6162b45ed10371a1162b8b42284c0d11deeca71342c68cd39d4bb33f35f638e22ca8861806bc3d SHA512 a13446fed6e0b8833012e26827d1ecdccbdb1e894f1a6c6b2d41359fb948834ac1cab364a1f5e7e51180b19979a27b34c3f51f326b30fd47c5c4fb71663fa0b9
-DIST htsjdk-2.2.2.tar.gz 11459641 BLAKE2B e7c34e3a9f2747c7668ae28da2f8c598b11dba6ef6b08daf9e43a710403ac578f0437e5f15f7f3e83ec0f13780471a5f3acd6f62a79880a86128b2f40b41bdd3 SHA512 69c4f6be9be16669fbbbcac2e668b564c09793763908b1c4703b760ea46fdbcf747d233f87c48888de3810379b02f2e0d8ebef4d1bf48215128e02cb4053bd10
-DIST htsjdk-2.5.1.tar.gz 9121664 SHA256 78ab25ba4c540805261faf6c7f2ae57755c26f654b93da6d41dc6ff21d59dc00 SHA512 6bc67deb28556664a018dd72a89f7c84f534262dc7f18072d4e1f4bdfc51298d8aeb7086a9d2764d92c44c69844577a9b9a005b00e13fc35f2bd240bde7a347f WHIRLPOOL e5da7f92e4be3271aa1387faaf6966b212a1fbe82d8dc3cea3115f75df9c8188323bb9402b8d34e58191e13b01411d6e529a78687d1f4b963cd239f4512ec88e
+DIST htsjdk-2.19.0.tar.gz 15602200 BLAKE2B eee9e4cbed27122020b7ec9de50c301c3078cc995a9aa6f89061518f9fab823054759dc17c16fb71da231b7e19876743146116ee7398af04a8e65b7781c62924 SHA512 07af3f5a592ab519349bd8a47dc336fe8673232daeb1d4c1a120dd4dde1c42db443998948185e2b18f27a5ac578b0afa0d7d09b36a66f69eba156ac0912d96b5
+DIST htsjdk-2.3.0.tar.gz 11466439 BLAKE2B 5bdfb89f99767335c3e3e45b43a237d8e050c68f02f4816d9cb23d2fce78ec133a1c29ea297eba0224ec11a162d2b40b3ea486d834488b4369d24931fbcb72b6 SHA512 43029b59c039accd5ae5d7631d72a11bfab80c38fcbfb3fa02e9bc9e9b795ca86f048a34a7182325c4d7123a82d2b6c5094e11f7118c09fca222b3b2327f6249
diff --git a/dev-java/htsjdk/htsjdk-2.1.0.ebuild b/dev-java/htsjdk/htsjdk-2.1.0.ebuild
index fc2dd6e8a..c94f79781 100644
--- a/dev-java/htsjdk/htsjdk-2.1.0.ebuild
+++ b/dev-java/htsjdk/htsjdk-2.1.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
JAVA_PKG_IUSE="doc source"
diff --git a/dev-java/htsjdk/htsjdk-2.5.1.ebuild b/dev-java/htsjdk/htsjdk-2.19.0.ebuild
index 755a6fa1f..349e56673 100644
--- a/dev-java/htsjdk/htsjdk-2.5.1.ebuild
+++ b/dev-java/htsjdk/htsjdk-2.19.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
JAVA_PKG_IUSE="doc source"
@@ -18,7 +18,8 @@ KEYWORDS=""
CDEPEND="dev-java/commons-jexl:2
dev-java/commons-compress:0
- dev-java/commons-logging:0"
+ dev-java/commons-logging:0
+ dev-java/gradle-bin:*"
DEPEND=">=virtual/jdk-1.8
${CDEPEND}"
diff --git a/dev-java/htsjdk/htsjdk-2.2.2.ebuild b/dev-java/htsjdk/htsjdk-2.3.0.ebuild
index fc2dd6e8a..c94f79781 100644
--- a/dev-java/htsjdk/htsjdk-2.2.2.ebuild
+++ b/dev-java/htsjdk/htsjdk-2.3.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
JAVA_PKG_IUSE="doc source"
diff --git a/dev-java/htsjdk/htsjdk-9999.ebuild b/dev-java/htsjdk/htsjdk-9999.ebuild
index b4a3c1441..2123bbc55 100644
--- a/dev-java/htsjdk/htsjdk-9999.ebuild
+++ b/dev-java/htsjdk/htsjdk-9999.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
JAVA_PKG_IUSE="doc source"
@@ -18,7 +18,8 @@ KEYWORDS=""
CDEPEND="dev-java/commons-jexl:2
dev-java/commons-compress:0
- dev-java/commons-logging:0"
+ dev-java/commons-logging:0
+ dev-java/gradle-bin:*"
DEPEND=">=virtual/jdk-1.8
${CDEPEND}"