Adding R-2.2.0 ebuild from bug 112022

git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@16 32389bae-6d03-0410-99cf-db05cde120eb

5 files changed, 383 insertions, 0 deletions

diff --git a/dev-lang/R/ChangeLog b/dev-lang/R/ChangeLog
new file mode 100644
index 000000000..65a81e36f
--- /dev/null
+++ b/dev-lang/R/ChangeLog
@@ -0,0 +1,263 @@
+# ChangeLog for dev-lang/R
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/ChangeLog,v 1.61 2005/09/03 19:24:43 corsair Exp $
+
+*R-2.2.0_p20051103 (10 Nov 2005)
+
+  10 Nov 2005; Lucas Chiesa <lucas.chiesa@gmail.com> R-2.2.0_p20051103:
+  Added new ebuild for R-2.2.0 with the latest patch set (2005-11-03).
+  Thanks Fernando Henrique Ferraz Pereira da Rosa <mentus@gmx.de>
+  for the ebuild. Closes bug #112022.
+  
+  03 Sep 2005; Markus Rothe <corsair@gentoo.org> R-2.1.1.ebuild:
+  Stable on ppc64
+
+  02 Sep 2005; Michael Hanselmann <hansmi@gentoo.org> R-2.1.1.ebuild:
+  Stable on ppc.
+
+  22 Aug 2005; Gustavo Zacarias <gustavoz@gentoo.org> R-2.1.1.ebuild:
+  Stable on sparc
+
+  22 Aug 2005; Marcus D. Hanwell <cryos@gentoo.org> -R-2.0.1.ebuild,
+  R-2.1.1.ebuild:
+  Removed old version. Stable on amd64 and x86.
+
+*R-2.1.1 (01 Jul 2005)
+
+  01 Jul 2005; Danny van Dyk <kugelfang@gentoo.org> R-2.0.1.ebuild,
+  R-2.1.0-r1.ebuild, +R-2.1.1.ebuild:
+  Moved 64bit check to pkg_setup() to make fortran.eclass work again. Bumped
+  to version 2.1.1
+
+  18 Jun 2005; Markus Rothe <corsair@gentoo.org> R-2.1.0-r1.ebuild:
+  Stable on ppc64
+
+  17 Jun 2005; Michael Hanselmann <hansmi@gentoo.org> R-2.1.0-r1.ebuild:
+  Stable on ppc.
+
+  13 Jun 2005; Gustavo Zacarias <gustavoz@gentoo.org> R-2.1.0-r1.ebuild:
+  Stable on sparc
+
+  12 Jun 2005; Marcus D. Hanwell <cryos@gentoo.org> -R-1.9.0-r1.ebuild:
+  Removing old version. Closes bug 91512.
+
+  11 Jun 2005; Marcus D. Hanwell <cryos@gentoo.org> R-2.1.0-r1.ebuild:
+  Stable on amd64 and x86.
+
+  07 Jun 2005; Patrick Kursawe <phosphan@gentoo.org> R-2.0.1.ebuild,
+  R-2.1.0-r1.ebuild:
+  Added LDPATH to R libs, bug #90601
+
+  01 Jun 2005; Mike Frysinger <vapier@gentoo.org> R-1.9.0-r1.ebuild,
+  R-2.0.1.ebuild:
+  Change USE=bzlib to USE=bzip2.
+
+*R-1.9.0-r1 (25 May 2005)
+
+  25 May 2005; Marcus D. Hanwell <cryos@gentoo.org> +R-1.9.0-r1.ebuild:
+  Bring back R-1.9.0-r1 until <=dev-python/rpy-0.3.5-r1 are removed from
+  portage.
+
+  25 May 2005; Marcus D. Hanwell <cryos@gentoo.org> -R-1.9.0-r1.ebuild:
+  Removed old version.
+
+  25 May 2005; Luca Barbato <lu_zero@gentoo.org> R-2.0.1.ebuild:
+  Marked ppc
+
+  24 May 2005; Marcus D. Hanwell <cryos@gentoo.org> R-2.0.1.ebuild:
+  Updated 64 bit detection code.
+
+  10 May 2005; Gustavo Zacarias <gustavoz@gentoo.org> R-2.0.1.ebuild:
+  Stable on sparc
+
+  08 May 2005; Marcus D. Hanwell <cryos@gentoo.org> -R-1.9.1.ebuild,
+  -R-2.0.0.ebuild, R-2.0.1.ebuild, -R-2.1.0.ebuild, R-2.1.0-r1.ebuild:
+  Marked 2.0.1 stable on amd64 and x86, cleaned out old ebuilds. Added new 64
+  bit detection code to 2.1.0-r1 as per bug 91512.
+
+*R-2.1.0-r1 (29 Apr 2005)
+
+  29 Apr 2005; Marcus D. Hanwell <cryos@gentoo.org> +R-2.1.0-r1.ebuild:
+  Get rid of obsolete USE flags, tidy up deps a little. Thanks to MATSUU
+  Takuto <matsuu@gentoo.org> in bug 67834 for the patch.
+
+  21 Apr 2005; Marcus D. Hanwell <cryos@gentoo.org> R-2.1.0.ebuild:
+  Update deps to reflect new USE flags.
+
+*R-2.1.0 (20 Apr 2005)
+
+  20 Apr 2005; Marcus D. Hanwell <cryos@gentoo.org> +R-2.1.0.ebuild:
+  Version bump, ebuild cleanups and some additional USE flags. Thanks to
+  matsuu for some of the suggestions in bug 67834.
+
+*R-2.0.1 (21 Feb 2005)
+
+  21 Feb 2005; Danny van Dyk <kugelfang@gentoo.org> R-2.0.0.ebuild,
+  +R-2.0.1.ebuild:
+  Fixed a sandbox violation in R-2.0.0 (BUG #79004) and marked stabled on
+  amd64. Added R-2.0.1 (BUG #72313).
+
+  17 Feb 2005; Bryan Østergaard <kloeri@gentoo.org> R-1.9.1.ebuild:
+  ~alpha keyword.
+
+  02 Feb 2005; Danny van Dyk <kugelfang@gentoo.org> R-2.0.0.ebuild:
+  GNU Fortran 77 profile name changed to g77 in fortran.eclass
+
+  17 Nov 2004; Markus Rothe <corsair@gentoo.org> R-2.0.0.ebuild:
+  stable on ppc64
+
+  10 Oct 2004; Danny van Dyk <kugelfang@gentoo.org> -R-1.8.1.ebuild,
+  R-1.9.0-r1.ebuild, R-2.0.0.ebuild:
+  R-2.0.0 now in testing on x86,sparc,amd64,ppc and ppc64; using new
+  fortran.eclass. R-1.9.0-r1 stable on all arches. Removed obsolete R-1.8.1.
+
+*R-2.0.0 (07 Oct 2004)
+
+  07 Oct 2004; George Shapovalov <george@gentoo.org> R-2.0.0 :
+  new version, masked with KEYWORDS="-*" to get a bit more testing
+
+  30 Sep 2004; Ferris McCormick <fmccor@gentoo.org> R-1.9.0-r1.ebuild:
+  Stable for sparc.
+
+  12 Sep 2004; Danny van Dyk <kugelfang@gentoo.org> R-1.9.0-r1.ebuild,
+  R-1.9.1.ebuild:
+  Removed f2c support for dev-lang/R on 64-bit arches. This is entirely R's
+  fault. f2c works perfectly right. Future versions of dev-lang/R will check for
+  this in ./configure. For R-1.9.{0,1} the ebuild checks for it. Fixes BUG
+  #61042.
+
+*R-1.9.1 (22 Aug 2004)
+
+  09 Sep 2004; Philippe Trottier <tchiwam@gentoo.org> R-1.9.1.ebuild,
+  marked ~ppc64
+
+  22 Aug 2004; Danny van Dyk <kugelfang@gentoo.org> -R-1.9.0.ebuild,
+  +R-1.9.1.ebuild:
+  Version bump to 1.9.1 (current stable). Removed obsolete 1.9.0.
+
+  06 Aug 2004; Danny van Dyk <kugelfang@gentoo.org> R-1.9.0-r1.ebuild:
+  Marked stable on amd64.
+
+  11 Jul 2004; Danny van Dyk <kugelfang@gentoo.org> R-1.8.1.ebuild,
+  R-1.9.0-r1.ebuild, R-1.9.0.ebuild:
+  Fixed BUG #56616. Tidied up g77/f2c check in >=R-1.9.0. Added f2c USE flag.
+
+  01 Jul 2004; Jeremy Huddleston <eradicator@gentoo.org> R-1.8.1.ebuild,
+  R-1.9.0-r1.ebuild, R-1.9.0.ebuild:
+  virtual/glibc -> virtual/libc
+
+  01 Jul 2004; Danny van Dyk <kugelfang@gentoo.org> R-1.8.1.ebuild,
+  R-1.9.0-r1.ebuild, R-1.9.0.ebuild:
+  Fixed BUG #55386 for amd64. Pending for rest of arches.
+
+*R-1.9.0-r1 (05 Jun 2004)
+
+  05 Jun 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.9.0-r1.ebuild:
+  Added a few USE flags according to suggestions by Leo Chen <lcheu@cs.sfu.ca>
+
+  28 May 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.9.0.ebuild:
+  Removing the f77 USE flag check - just giving a hint when no g77 found.
+
+  17 May 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.9.0.ebuild:
+  adding f77 to IUSE
+
+  11 May 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.9.0.ebuild:
+  pkg_setup checks for g77 presence now.
+
+  20 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.9.0.ebuild:
+  Changed dependency - works also with current libglade, see bug #47825
+
+*R-1.9.0 (13 Apr 2004)
+
+  13 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.8.1.ebuild,
+  R-1.9.0.ebuild:
+  Version bump, added write permission for /var/cache/fonts
+
+  01 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.8.0.ebuild,
+  R-1.8.1.ebuild:
+  1.8.1 is stable
+
+  22 Mar 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.8.1.ebuild:
+  Fixing bug #40100 (problems with newer Xfree)
+
+  25 Feb 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.4.1-r1.ebuild,
+  R-1.4.1.ebuild, R-1.5.1.ebuild, R-1.6.1.ebuild, R-1.6.2.ebuild,
+  R-1.7.0.ebuild, R-1.7.1.ebuild, R-1.8.0.ebuild, files/R-1.5.1-tcltk.diff:
+  Big cleanup, marking 1.8.0 as stable
+
+*R-1.8.1 (17 Feb 2004)
+
+  17 Feb 2004; Patrick Kursawe <phosphan@gentoo.org> R-1.8.1.ebuild:
+  Version bump
+
+  21 Oct 2003; David Holm <dholm@gentoo.org> R-1.8.0.ebuild:
+  Added to ~ppc.
+
+*R-1.8.0 (16 Oct 2003)
+
+  16 Oct 2003; George Shapovalov <george@gentoo.org> R-1.8.0 :
+  new version (#30784), fixes gnome? dependencies
+  thanks to kdh <bolter111@hotmail.com> for an update
+
+*R-1.7.1 (19 Jun 2003)
+
+  19 Jun 2003; George Shapovalov <george@gentoo.org> R-1.7.1 :
+  new version (#23012), now correctly builds tcltk support
+  fix and update by Tristan Henderson <T.Henderson@cs.ucl.ac.uk>
+
+*R-1.7.0 (29 May 2003)
+
+  29 May 2003; Grant Goodyear <g2boojum@gentoo.org> R-1.7.0.ebuild:
+  Version update.  Thanks to Stuart Luppescu for the heads-up.
+
+*R-1.6.2 (12 Apr 2003)
+
+  12 Apr 2003; Grant Goodyear <g2boojum@gentoo.org> Manifest, R-1.6.2.ebuild:
+  Version bump
+
+*R-1.6.1 (12 Dec 2002)
+
+  12 Dec 2002; George Shapovalov <george@gentoo.org> R-1.6.1.ebuild :
+
+  version update, patching is unnecessary now. 
+  Update subitted by  Sam Wouters <sam.wouters@esat.kuleuven.ac.be>, see #11313
+
+* Autoupdate keywords (12-6-02)
+  06 Dec 2002; Rodney Rees <manson@gentoo.org> : changed sparc ~sparc keywords
+ 
+*R-1.5.1 (11 July 2002)
+
+  09 Aug 2002; George Shapovalov <george@gentoo.org> R-1.5.1.ebuild :
+
+  fixed the wrappers:
+  R installs two identical wrappers (R that invoke R.bin) under /usr/bin and 
+  /usr/lib/R/bin/. Only one of these was modified to have correct R_HOME_DIR
+  Changed ebuild to modify R under /usr/lib/R/bin and symlink it into /usr/bin
+
+  11 July 2002; George Shapovalov <george@gentoo.org> R-1.5.1.ebuild, files/digest-R-1.5.1 :
+  
+  upped version
+  new version submitted by Tristan Henderson <T.Henderson@cs.ucl.ac.uk>
+
+*R-1.4.1-r1 (11 Apr 2002)
+  11 Apr 2002; Spider <spider@gentoo.org>
+  Forcing an upgrade due to libpng upgrade.
+
+
+*R-1.4.1 (19 Feb 2002)
+
+  19 Feb 2002; T.Neidt <tod@gentoo.org> ChangeLog, R-1.4.1.ebuild :
+  
+  Initial commit. R is GNU S - A language and environment for statistical
+  computing and graphics. Gnome and tcltk gui's are available if in USE.
+  
+  If gnome, a rudimentary menu entry is made under Applications.
+  However, it has the annoying tendency to pop up a terminal window to start
+  the gui. (todo 1)  
+  
+  Also, the html files are not accessible from the toolbar menu entry unless
+  you happen to be running netscape. (todo 2)
+  
+  This ebuild makes use of a new USE variable, 'atlas', which will compile
+  R using the auto-tuned blas libraries provided by atlas. NOTE: atlas ebuild
+  currently only provides static libraries. Shared libraries are in the works.
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
new file mode 100644
index 000000000..24e7cfcdd
--- /dev/null
+++ b/dev-lang/R/Manifest
@@ -0,0 +1,4 @@
+MD5 70940a38a384f0e3481f0830e1f00d38 R-2.2.0_p20051103.ebuild 3216
+MD5 207ddfb5f5a1df1a0a67e34cab4052cd ChangeLog 9369
+MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+MD5 1c4697b00564f08c0e7a17257fdd7f57 files/digest-R-2.2.0_p20051103 75
diff --git a/dev-lang/R/R-2.2.0_p20051103.ebuild b/dev-lang/R/R-2.2.0_p20051103.ebuild
new file mode 100644
index 000000000..7b7b47ca2
--- /dev/null
+++ b/dev-lang/R/R-2.2.0_p20051103.ebuild
@@ -0,0 +1,110 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.1.1.ebuild,v 1.5 2005/09/03 19:24:43 corsair Exp $
+
+inherit fortran toolchain-funcs
+
+IUSE="blas jpeg nls png readline tcltk X"
+DESCRIPTION="R is GNU S - A language and environment for statistical computing and graphics."
+MY_P="R-patched"
+SRC_URI="ftp://ftp.stat.math.ethz.ch/Software/R/${MY_P}_2005-11-09.tar.bz2"
+#SRC_URI="http://cran.r-project.org/src/base/R-2/${P}.tar.gz"
+#There are daily release patches, don't know how to utilize these
+#"ftp://ftp.stat.math.ethz.ch/Software/${PN}/${PN}-release.diff.gz"
+
+HOMEPAGE="http://www.r-project.org/"
+DEPEND="virtual/libc
+		>=dev-lang/perl-5.6.1-r3
+		readline? ( >=sys-libs/readline-4.1-r3 )
+		jpeg? ( >=media-libs/jpeg-6b-r2 )
+		png? ( >=media-libs/libpng-1.2.1 )
+		blas? ( virtual/blas )
+		X? ( virtual/x11 )
+		tcltk? ( dev-lang/tk )"
+SLOT="0"
+LICENSE="GPL-2 LGPL-2.1"
+KEYWORDS="~x86"
+
+S=${WORKDIR}/${MY_P}
+
+pkg_setup() {
+	# Test for a 64 bit architecture - f2c won't work on 64 bit archs with R.
+	# Thanks to vapier for providing the test.
+	echo 'int main(){}' > test.c
+	$(tc-getCC) -c test.c -o test.o
+	if file test.o | grep -qs 64-bit ; then
+		einfo "64 bit architecture detected, using g77."
+		FORTRAN="g77"
+	else
+		FORTRAN="g77 f2c"
+	fi
+	fortran_pkg_setup
+}
+
+src_compile() {
+	local myconf="--enable-R-profiling --enable-R-shlib --enable-linux-lfs"
+
+	if use tcltk; then
+		#configure needs to find the files tclConfig.sh and tkConfig.sh
+		myconf="${myconf} --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh"
+	else
+		myconf="${myconf} --without-tcltk"
+	fi
+
+	econf \
+		$(use_enable nls) \
+		$(use_with blas) \
+		$(use_with jpeg jpeglib) \
+		$(use_with png libpng) \
+		$(use_with readline) \
+		$(use_with X x) \
+		${myconf} || die "econf failed"
+	emake || die "emake failed"
+}
+
+src_install() {
+	make \
+		prefix=${D}/usr \
+		mandir=${D}/usr/share/man \
+		infodir=${D}/usr/share/info \
+		rhome=${D}/usr/$(get_libdir)/R \
+		install || die "Installation Failed"
+
+	#fix the R wrapper script to have the correct R_HOME_DIR
+	#sed regexp borrowed from included debian rules
+	sed \
+		-e "/^R_HOME_DIR=.*/s::R_HOME_DIR=/usr/$(get_libdir)/R:" \
+		-i ${D}/usr/$(get_libdir)/R/bin/R \
+		|| die "sed failed"
+
+	#same for R_SHARE_DIR, R_INCLUDE_DIR and R_DOC_DIR
+
+	sed \
+		 -e "/^R_SHARE_DIR=.*/s::R_SHARE_DIR=/usr/$(get_libdir)/R/share:" \
+		-i ${D}/usr/$(get_libdir)/R/bin/R \
+		|| die "sed failed"
+
+	sed \
+		-e "/^R_INCLUDE_DIR=.*/s::R_INCLUDE_DIR=/usr/$(get_libdir)/R/include:" \
+		-i ${D}/usr/$(get_libdir)/R/bin/R \
+		|| die "sed failed"
+
+	sed \
+		-e "/^R_DOC_DIR=.*/s::R_DOC_DIR=/usr/$(get_libdir)/R/doc:" \
+		-i ${D}/usr/$(get_libdir)/R/bin/R \
+		|| die "sed failed"
+
+
+	#R installs two identical wrappers under /usr/bin and /usr/lib/R/bin/
+	#the 2nd one is corrected by above sed, for the 1st
+	#I'll just symlink it into /usr/bin
+	cd ${D}/usr/bin/
+	rm R
+	dosym ../$(get_libdir)/R/bin/R /usr/bin/R
+	dodir /etc/env.d
+	echo > ${D}/etc/env.d/99R "LDPATH=/usr/$(get_libdir)/R/lib"
+	cd ${S}
+
+	dodoc AUTHORS BUGS COPYING* ChangeLog FAQ *NEWS README \
+		RESOURCES THANKS VERSION Y2K
+}
diff --git a/dev-lang/R/files/digest-R-2.2.0_p20051103 b/dev-lang/R/files/digest-R-2.2.0_p20051103
new file mode 100644
index 000000000..782fae4e3
--- /dev/null
+++ b/dev-lang/R/files/digest-R-2.2.0_p20051103
@@ -0,0 +1 @@
+MD5 2095c08f6ce15124b9f6e4333b20202e R-patched_2005-11-09.tar.bz2 11991521
diff --git a/dev-lang/R/metadata.xml b/dev-lang/R/metadata.xml
new file mode 100644
index 000000000..b229aec85
--- /dev/null
+++ b/dev-lang/R/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+</pkgmetadata>