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| author |   Sergei Trofimovich <siarheit@google.com> | 2016-04-03 16:34:21 +0100 |
|---|---|---|
| committer |   David Seifert <soap@gentoo.org> | 2016-04-03 19:43:47 +0200 |
| commit | f1f6c31bb308f59777bb396827099ec71b4b35a1 (patch) | |
| tree | 1e3cbcbbd39d4247686ca33797e54830ab01a32f /sci-biology/abyss/abyss-1.3.6-r1.ebuild | |
| parent | sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc. (diff) | |
| download | sci-f1f6c31bb308f59777bb396827099ec71b4b35a1.tar.gz sci-f1f6c31bb308f59777bb396827099ec71b4b35a1.tar.bz2 sci-f1f6c31bb308f59777bb396827099ec71b4b35a1.zip | |
sci-biology/abyss: fix automagic haskell deps, bug #534412
It's a ::gentoo change a50e1769e82e28dedb16083ac9136f17f9af2297
Reported-by: Toralf Förster
Bug: https://bugs.gentoo.org/534412
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/abyss/abyss-1.3.6-r1.ebuild')
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.6-r1.ebuild | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/sci-biology/abyss/abyss-1.3.6-r1.ebuild b/sci-biology/abyss/abyss-1.3.6-r1.ebuild index f002a9578..a449c72dc 100644 --- a/sci-biology/abyss/abyss-1.3.6-r1.ebuild +++ b/sci-biology/abyss/abyss-1.3.6-r1.ebuild @@ -14,14 +14,21 @@ SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" LICENSE="abyss" SLOT="0" -IUSE="+mpi openmp" +IUSE="+mpi openmp misc-haskell" KEYWORDS="~amd64 ~x86" -DEPEND=" +RDEPEND=" dev-cpp/sparsehash dev-libs/boost - mpi? ( virtual/mpi )" -RDEPEND="${DEPEND}" + misc-haskell? ( dev-libs/gmp:0= + virtual/libffi:0= + ) + mpi? ( virtual/mpi ) +" +DEPEND="${RDEPEND} + misc-haskell? ( dev-lang/ghc + dev-haskell/mmap ) +" # todo: --enable-maxk=N configure option # todo: fix automagic mpi toggling @@ -40,6 +47,10 @@ src_prepare() { } src_configure() { + # disable building haskell tool Misc/samtobreak + # unless request by user: bug #534412 + use misc-haskell || export ac_cv_prog_ac_ct_GHC= + local myeconfargs=( --docdir="${EPREFIX}/usr/share/doc/${PF}" $(use_enable openmp) |