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authorDavid Seifert <soap@gentoo.org>2016-05-08 01:20:43 +0200
committerDavid Seifert <soap@gentoo.org>2016-05-08 01:20:43 +0200
commit1af3cb1d79a54e814b222cb56e4de3630136b828 (patch)
tree245e32ad67080031bd909dc246ee4327fd56d155 /sci-biology/bwa/bwa-0.7.13.ebuild
parentDrop invalid deps (diff)
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sci-biology/bwa: move to main tree
Diffstat (limited to 'sci-biology/bwa/bwa-0.7.13.ebuild')
-rw-r--r--sci-biology/bwa/bwa-0.7.13.ebuild36
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diff --git a/sci-biology/bwa/bwa-0.7.13.ebuild b/sci-biology/bwa/bwa-0.7.13.ebuild
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+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
-HOMEPAGE="http://bio-bwa.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-# bwa-0.7.13 has "Apache2" branch with Apache2-licensed BWA with ropebwt2 index
-# feature which is slower than "bwtsw" algorithm but it has a permissive license.
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
-
-PATCHES=( "${FILESDIR}"/${P}-Makefile.patch )
-
-src_prepare() {
- epatch ${PATCHES[@]}
- tc-export CC AR
-}
-
-src_install() {
- dobin bwa
-
- doman bwa.1
-
- exeinto /usr/libexec/${PN}
- doexe qualfa2fq.pl xa2multi.pl
-
- dodoc NEWS.md README-alt.md README.md
-}