Move to new embassy-ng.eclass

(Portage version: 2.2.0_alpha26/git/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)

5 files changed, 190 insertions, 0 deletions

diff --git a/sci-biology/embassy-memenew/ChangeLog b/sci-biology/embassy-memenew/ChangeLog
new file mode 100644
index 000000000..4c03c1d6e
--- /dev/null
+++ b/sci-biology/embassy-memenew/ChangeLog
@@ -0,0 +1,61 @@
+# ChangeLog for sci-biology/embassy-memenew
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/ChangeLog,v 1.11 2010/01/01 22:03:00 fauli Exp $
+
+*embassy-memenew-4.0.0-r1 (10 Mar 2011)
+
+  10 Mar 2011; Justin Lecher <jlec@gentoo.org>
+  +embassy-memenew-4.0.0-r1.ebuild, +files/embassy-memenew-4.0.0-r1.patch,
+  +metadata.xml:
+  Move to new embassy-ng.eclass
+
+  01 Jan 2010; Christian Faulhammer <fauli@gentoo.org>
+  embassy-memenew-4.0.0.ebuild:
+  Transfer Prefix keywords
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
+  Giving up maintainership of this package.
+
+*embassy-memenew-4.0.0 (01 Sep 2009)
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-memenew-4.0.0.ebuild:
+  Updated version for EMBASSY 6.1.0.
+
+  01 Sep 2009; Olivier Fisette <ribosome@gentoo.org>
+  embassy-memenew-0.1.0-r1.ebuild:
+  Stabilised on amd64 and x86.
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  embassy-memenew-0.1.0.ebuild, embassy-memenew-0.1.0-r1.ebuild:
+  Fixed description.
+
+*embassy-memenew-0.1.0-r1 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-memenew-0.1.0-r1.ebuild:
+  New upstream version/package for EMBASSY 6.0.1.
+
+  15 Feb 2007; Jeff Gardner <je_fro@gentoo.org>
+  embassy-memenew-0.1.0.ebuild:
+  Added ~amd64.
+
+  03 Nov 2006; Jeff Gardner <je_fro@gentoo.org>
+  embassy-memenew-0.1.0.ebuild:
+  Added ~sparc
+
+  02 Nov 2006; Fabian Groffen <grobian@gentoo.org>
+  embassy-memenew-0.1.0.ebuild:
+  Dropped ppc-macos, see you in prefix.
+
+  02 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
+  embassy-memenew-0.1.0.ebuild:
+  Added to x86.
+
+*embassy-memenew-0.1.0 (21 Jul 2006)
+
+  21 Jul 2006; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +embassy-memenew-0.1.0.ebuild:
+  Initial import. This package will probably replace EMBASSY-MEME in new
+  EMBASSY releases.
+
diff --git a/sci-biology/embassy-memenew/Manifest b/sci-biology/embassy-memenew/Manifest
new file mode 100644
index 000000000..00c3e1bea
--- /dev/null
+++ b/sci-biology/embassy-memenew/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX embassy-memenew-4.0.0-r1.patch 3014 RMD160 647aa694e1c8f4bc399173ef8f18f91b19895e69 SHA1 a6a3387a70be970d90f4120dd3999a2dcdd92239 SHA256 14f4c327f69e61e55303b0441ae25fe73aa3b634650068cdccd5d5ab815bda6a
+DIST embassy-6.3.1-memenew-4.0.0.tar.gz 513418 RMD160 7072d182479a726e568b0bc2a4c7757ed1c6c087 SHA1 d382f39d1302f1b0799d5b6cb02cd9cfbecee972 SHA256 2192d33b5ee1147742f51416b0504812dfeb13b3b8ec0bfb62fd729e703a19c3
+EBUILD embassy-memenew-4.0.0-r1.ebuild 381 RMD160 82df9d9d812eaaef1caacbba42cc513e5c368bbe SHA1 00918f9f04ba40a606c02465f7164b8163684c42 SHA256 34a921ff0edec8e7e2bbc1c578118a1ca496f8421d7759d8a10c26071822f58a
+MISC ChangeLog 1922 RMD160 e2dad93d50b0e5646664095b8bbb605f1811dc62 SHA1 7b3440b830034b5f524f0b46e3309ad1b1628068 SHA256 8e5afd94d3ec66002841f7aee3f6b26871e4cdb0d283f00f887de148e0a1b0bc
+MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.17 (GNU/Linux)
+
+iEYEARECAAYFAk14ukoACgkQgAnW8HDreRZ15QCgpquA4cFBqFZdjDcjCPVRCuav
+bQsAoJ94O6+vJ5FZPPArqx7b31RVnBlJ
+=kLlH
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/embassy-memenew/embassy-memenew-4.0.0-r1.ebuild b/sci-biology/embassy-memenew/embassy-memenew-4.0.0-r1.ebuild
new file mode 100644
index 000000000..18ef903c0
--- /dev/null
+++ b/sci-biology/embassy-memenew/embassy-memenew-4.0.0-r1.ebuild
@@ -0,0 +1,10 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-memenew/embassy-memenew-4.0.0.ebuild,v 1.2 2010/01/01 22:03:00 fauli Exp $
+
+EBOV="6.3.1"
+EBO_DESCRIPTION="MEME - Multiple Em for Motif Elicitation"
+
+inherit embassy-ng
+
+KEYWORDS="~amd64 ~ppc ~x86 ~x86-linux ~ppc-macos"
diff --git a/sci-biology/embassy-memenew/files/embassy-memenew-4.0.0-r1.patch b/sci-biology/embassy-memenew/files/embassy-memenew-4.0.0-r1.patch
new file mode 100644
index 000000000..b90927fa0
--- /dev/null
+++ b/sci-biology/embassy-memenew/files/embassy-memenew-4.0.0-r1.patch
@@ -0,0 +1,99 @@
+diff --git a/Makefile.am b/Makefile.am
+index 9172bb3..349b13b 100644
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -1,5 +1,6 @@
+ #
+ 
++ACLOCAL_AMFLAGS = -I m4
+ SUBDIRS = src emboss_acd emboss_doc
+ 
+ EXTRA_DIST = depcomp ltmain.sh install-sh config.sub config.guess
+diff --git a/configure.in b/configure.in
+index fc16603..1ca9623 100644
+--- a/configure.in
++++ b/configure.in
+@@ -187,15 +187,6 @@ AC_PROG_INSTALL
+ AC_PROG_LN_S
+ AC_PROG_MAKE_SET
+ 
+-dnl Intel MacOSX 10.6 puts X11 in a non-standard place
+-if test "${with_x}" != "no" ; then
+-if test "`uname -a | grep Darwin`"; then
+-OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'`
+-if test ${OSXX} '>' '10.4'; then
+-CFLAGS="$CFLAGS -I/usr/X11/include -L/usr/X11/lib"
+-fi
+-fi
+-fi
+ 
+ dnl Check for header files
+ AC_PATH_XTRA
+@@ -250,8 +241,8 @@ AX_LIB_POSTGRESQL
+ CFLAGS="$CFLAGS $MYSQL_CFLAGS"
+ LDFLAGS="$LDFLAGS $MYSQL_LDFLAGS"
+ 
+-CFLAGS="$CFLAGS $POSTGRESQL_CFLAGS"
+-LDFLAGS="$LDFLAGS $POSTGRESQL_LDFLAGS"
++CFLAGS="$POSTGRESQL_CFLAGS $CFLAGS"
++LDFLAGS="$POSTGRESQL_LDFLAGS $LDFLAGS"
+ 
+ 
+ dnl "Export" these variables for PCRE
+@@ -387,9 +378,30 @@ AC_ARG_ENABLE(systemlibs,
+    AS_HELP_STRING([--enable-systemlibs], [Use system versions of zlib/expat]))
+ if test "${enable_systemlibs}" = "yes" ; then
+     have_systemlibs=yes
++    DEFINE_USE_SYSTEM_PCRE="#define"
++    PKG_CHECK_MODULES([PLPLOT], [plplotd])
++    PKG_CHECK_MODULES([ZLIB], [zlib])
++else
++    dnl X11 is only used by plplot
++    dnl Intel MacOSX 10.6 puts X11 in a non-standard place
++    if test "${with_x}" != "no" ; then
++    if test "`uname -a | grep Darwin`"; then
++    OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'`
++    if test ${OSXX} '>' '10.4'; then
++    CFLAGS="$CFLAGS -I/usr/X11/include -L/usr/X11/lib"
++    fi
++    fi
++    fi
++    if test "${with_x}" != "no" ; then
++    LF_EMBOSS_PATH_XLIB
++    fi
++     AC_MSG_NOTICE(USING bundled LIBS)
+ fi          
+ AM_CONDITIONAL(ESYSTEMLIBS, test "$have_systemlibs" = "yes")
+ AC_SUBST(ESYSTEMLIBS)
++AC_SUBST(DEFINE_USE_SYSTEM_PCRE)
++AC_SUBST(PLPLOT_CFLAGS)
++AC_SUBST(PLPLOT_LIBS)
+ 
+ 
+ 
+diff --git a/src/Makefile.am b/src/Makefile.am
+index 2d0c070..171179d 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -17,9 +17,9 @@ INCLUDES = -I../../../nucleus -I../../../ajax/pcre \
+ 	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
+ 	-I../../../ajax/acd -I../../../plplot
+ else
+-INCLUDES = -I${embprefix}/include -I${embprefix}/include/eplplot \
+-	$(NLINCLUDES) \
+-	-I${embprefix}/include/epcre
++INCLUDES = -I${embprefix}/include $(PLPLOT_CFLAGS) \
++	$(NLINCLUDES) -I${embprefix}/include/emboss \
++	-I${embprefix}/include/pcre
+ endif
+ 
+ if ISSHARED
+@@ -59,6 +59,6 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
+ 	../../../plplot/libeplplot.la \
+ 	$(XLIB)
+ else
+-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
+-        -lajax -lepcre $(NLADD) -leplplot $(XLIB)
++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
++        -lajax -lpcre $(NLADD) $(PLPLOT_LIBS) $(XLIB)
+ endif
diff --git a/sci-biology/embassy-memenew/metadata.xml b/sci-biology/embassy-memenew/metadata.xml
new file mode 100644
index 000000000..d4648212c
--- /dev/null
+++ b/sci-biology/embassy-memenew/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+</pkgmetadata>