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authorbicatali <bicatali@32389bae-6d03-0410-99cf-db05cde120eb>2008-03-17 16:21:32 +0000
committerbicatali <bicatali@32389bae-6d03-0410-99cf-db05cde120eb>2008-03-17 16:21:32 +0000
commit76ffb781ed7a917f23b67454e9f950e5e3b83527 (patch)
tree94fa8e1ddc7cb9ef80b78ea7896a5845f074f95b /sci-biology/generecon
parentmove stuff to root (diff)
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moved overlay to new directory
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@979 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-biology/generecon')
-rw-r--r--sci-biology/generecon/ChangeLog10
-rw-r--r--sci-biology/generecon/Manifest5
-rw-r--r--sci-biology/generecon/files/generecon-docfiles.patch12
-rw-r--r--sci-biology/generecon/generecon-1.2.1-r1.ebuild37
-rw-r--r--sci-biology/generecon/metadata.xml9
5 files changed, 73 insertions, 0 deletions
diff --git a/sci-biology/generecon/ChangeLog b/sci-biology/generecon/ChangeLog
new file mode 100644
index 000000000..ff5a98428
--- /dev/null
+++ b/sci-biology/generecon/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/generecon
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*generecon-1.2.1 (19 Apr 2006)
+
+ 19 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com>:
+ +generecon-1.2.1.ebuild, +metadata.xml, +ChangeLog,
+ Initial import. Thanks to Neil <nshephard@gmail.com>
+ for the initial ebuild. Closes bug #128514.
diff --git a/sci-biology/generecon/Manifest b/sci-biology/generecon/Manifest
new file mode 100644
index 000000000..9157588f1
--- /dev/null
+++ b/sci-biology/generecon/Manifest
@@ -0,0 +1,5 @@
+AUX generecon-docfiles.patch 435 RMD160 ce732399b02f42a0089ea82ea240098dfb8207c5 SHA1 4f6ed16b9ce8f118b99a47d9e36ffa304e42e8bb SHA256 37fbf94d6716a489e6a59f119cf617b9ff024e612dc96323d2297f9c09360175
+DIST generecon-1.2.1.tar.gz 238270 RMD160 f625ec81db88556a33e76f63c5c242b70e951f0f SHA1 a1562a21eab88d6ac1b2d2c046b87414ff703d4b SHA256 b35496ab6baf0bda45dc7a934385441cc92bfac39cb0a261a541ad8b258ba446
+EBUILD generecon-1.2.1-r1.ebuild 1017 RMD160 74ae5fc49e83237421fdcd81270a393e3657107b SHA1 d8ee9592d814f78d4751bb7a32e69bbd2c545815 SHA256 7ba69a4147c5feac1f03a63e5db6c7fa6d0dec342681f45b10b437874588b396
+MISC ChangeLog 363 RMD160 19d0d4926d34d52c906e11fef60b3d7d713c0b4f SHA1 d3248b7ba9d5b2aa8af1c6c77802199041720c0e SHA256 9a3bb08c6357408656ecf892cbe5e25eb62f53211e8276237b383d7548755242
+MISC metadata.xml 261 RMD160 d7630eceb5ae049fa36c58ed3c9f6fe7780c15bf SHA1 6ded05d9eaded2a6b810b7f80dd2dc3270bbff8e SHA256 8bbae243cac9cf6fc1d24a0582390bd1184df161f4d7f87300874e6a7860b15c
diff --git a/sci-biology/generecon/files/generecon-docfiles.patch b/sci-biology/generecon/files/generecon-docfiles.patch
new file mode 100644
index 000000000..79d63e73f
--- /dev/null
+++ b/sci-biology/generecon/files/generecon-docfiles.patch
@@ -0,0 +1,12 @@
+diff -Nuar generecon-1.2.1.orig/Makefile.am generecon-1.2.1/Makefile.am
+--- generecon-1.2.1.orig/Makefile.am 2006-04-19 12:52:18.000000000 -0300
++++ generecon-1.2.1/Makefile.am 2006-04-19 12:55:53.000000000 -0300
+@@ -31,7 +31,7 @@
+ bin_PROGRAMS = generecon
+
+
+-docdir = ${prefix}/share/generecon/doc
++docdir = ${prefix}/share/doc/#PF#
+ dist_doc_DATA =
+ test_inputdir = ${prefix}/share/generecon/test-input
+ dist_test_input_DATA =
diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild
new file mode 100644
index 000000000..7adfb5cf5
--- /dev/null
+++ b/sci-biology/generecon/generecon-1.2.1-r1.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils
+
+DESCRIPTION="Generecon performs linkage disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain Monte Carlo methods."
+HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/"
+SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz"
+SLOT="0"
+
+# License of the package. This must match the name of file(s) in
+# /usr/portage/licenses/. For complex license combination see the developer
+# docs on gentoo.org for details.
+LICENSE="GPL-2"
+
+KEYWORDS="x86"
+
+DEPEND="dev-scheme/guile
+ sci-libs/gsl"
+
+src_unpack() {
+ unpack ${A}
+ sed 's|#PF#|'${PF}'|g' ${FILESDIR}/${PN}-docfiles.patch > ${PN}-docfiles.patch
+
+ epatch ${PN}-docfiles.patch
+
+ cd ${S}
+ pwd
+ einfo "Regenerating autotools files..."
+ aclocal || die "aclocal failed"
+ automake || die "automake failed"
+}
+
+src_install() {
+ make DESTDIR=${D} install || die "make install failed"
+}
diff --git a/sci-biology/generecon/metadata.xml b/sci-biology/generecon/metadata.xml
new file mode 100644
index 000000000..963198591
--- /dev/null
+++ b/sci-biology/generecon/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+ <maintainer>
+ <email>lucas.chiesa@gmail.com</email>
+ <name>Lucas Chiesa</name>
+ </maintainer>
+</pkgmetadata>