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author | Justin Lecher <jlec@gentoo.org> | 2013-04-01 15:26:22 +0200 |
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committer | Justin Lecher <jlec@gentoo.org> | 2013-04-01 15:26:22 +0200 |
commit | 2b64eb561a6fb14fd4af81a272d17ac9590f0a23 (patch) | |
tree | 7b7d3a6ec60cd966091cca6e8e22fc16db0e470e /sci-biology/ncbi-tools++ | |
parent | Update patches (diff) | |
download | sci-2b64eb561a6fb14fd4af81a272d17ac9590f0a23.tar.gz sci-2b64eb561a6fb14fd4af81a272d17ac9590f0a23.tar.bz2 sci-2b64eb561a6fb14fd4af81a272d17ac9590f0a23.zip |
sci-biology/ncbi-tools++: Some Prefix love
Package-Manager: portage-2.2.0_alpha170
RepoMan-Options: --force
Diffstat (limited to 'sci-biology/ncbi-tools++')
-rw-r--r-- | sci-biology/ncbi-tools++/ChangeLog | 7 | ||||
-rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 87 |
2 files changed, 55 insertions, 39 deletions
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog index ab4e4ea21..234411af5 100644 --- a/sci-biology/ncbi-tools++/ChangeLog +++ b/sci-biology/ncbi-tools++/ChangeLog @@ -2,6 +2,13 @@ # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild: + Some Prefix love + + 01 Apr 2013; Justin Lecher <jlec@gentoo.org> ncbi-tools++-9.0.0-r1.ebuild: + Some Prefix love + + 03 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: Document USE diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild index eada94be5..9a2f8da09 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild @@ -104,6 +104,8 @@ src_prepare() { epatch ${PATCHES[@]} tc-export CXX CC + + # cd src/build-system || die # eaclocal -I. # eautoconf @@ -184,9 +186,9 @@ src_configure() { # --with-sssutils # --with-sssdb # --with-included-sss - --with-z="${EPREFIX}"/usr - --with-bz2="${EPREFIX}"/usr - --with-muparser="${EPREFIX}"/usr + --with-z="${EPREFIX}/usr" + --with-bz2="${EPREFIX}/usr" + --with-muparser="${EPREFIX}/usr" --without-sybase --with-autodep # --with-3psw=std:netopt favor standard (system) builds of the above pkgs @@ -199,41 +201,41 @@ src_configure() { $(use_with prefix runpath "${EPREFIX}/usr/$(get_libdir)/ncbi_cxx") $(use_with test check) $(use_with pch) - $(use_with lzo lzo "${EPREFIX}"/usr) - $(use_with pcre pcre "${EPREFIX}"/usr) - $(use_with gnutls gnutls "${EPREFIX}"/usr) - $(use_with ssl openssl "${EPREFIX}"/usr) - $(use_with ftds ftds "${EPREFIX}"/usr) - $(use_with mysql mysql "${EPREFIX}"/usr) - $(use_with fltk fltk "${EPREFIX}"/usr) - $(use_with opengl opengl "${EPREFIX}"/usr) - $(use_with mesa mesa "${EPREFIX}"/usr) - $(use_with opengl glut "${EPREFIX}"/usr) - $(use_with opengl glew "${EPREFIX}"/usr) + $(use_with lzo lzo "${EPREFIX}/usr") + $(use_with pcre pcre "${EPREFIX}/usr") + $(use_with gnutls gnutls "${EPREFIX}/usr") + $(use_with ssl openssl "${EPREFIX}/usr") + $(use_with ftds ftds "${EPREFIX}/usr") + $(use_with mysql mysql "${EPREFIX}/usr") + $(use_with fltk fltk "${EPREFIX}/usr") + $(use_with opengl opengl "${EPREFIX}/usr") + $(use_with mesa mesa "${EPREFIX}/usr") + $(use_with opengl glut "${EPREFIX}/usr") + $(use_with opengl glew "${EPREFIX}/usr") $(use_with opengl glew-mx) - $(use_with wxwidgets wxwidgets "${EPREFIX}"/usr) + $(use_with wxwidgets wxwidgets "${EPREFIX}/usr") $(use_with wxwidgets wxwidgets-ucs) - $(use_with freetype freetype "${EPREFIX}"/usr) - $(use_with fastcgi fastcgi "${EPREFIX}"/usr) - $(use_with berkdb bdb "${EPREFIX}"/usr) - $(use_with odbc odbc "${EPREFIX}"/usr) - $(use_with python python "${EPREFIX}"/usr) - $(use_with boost boost "${EPREFIX}"/usr) - $(use_with sqlite sqlite3 "${EPREFIX}"/usr) - $(use_with icu icu "${EPREFIX}"/usr) - $(use_with expat expat "${EPREFIX}"/usr) - $(use_with xml libxml "${EPREFIX}"/usr) - $(use_with xml libxslt "${EPREFIX}"/usr) - $(use_with xerces xerces "${EPREFIX}"/usr) - $(use_with hdf5 hdf5 "${EPREFIX}"/usr) - $(use_with xalan xalan "${EPREFIX}"/usr) -# $(use_with gif gif "${EPREFIX}"/usr) - $(use_with jpeg jpeg "${EPREFIX}"/usr) - $(use_with tiff tiff "${EPREFIX}"/usr) - $(use_with png png "${EPREFIX}"/usr) - $(use_with xpm xpm "${EPREFIX}"/usr) - $(use_with curl curl "${EPREFIX}"/usr) -# $(use_with X x "${EPREFIX}"/usr) + $(use_with freetype freetype "${EPREFIX}/usr") + $(use_with fastcgi fastcgi "${EPREFIX}/usr") + $(use_with berkdb bdb "${EPREFIX}/usr") + $(use_with odbc odbc "${EPREFIX}/usr") + $(use_with python python "${EPREFIX}/usr") + $(use_with boost boost "${EPREFIX}/usr") + $(use_with sqlite sqlite3 "${EPREFIX}/usr") + $(use_with icu icu "${EPREFIX}/usr") + $(use_with expat expat "${EPREFIX}/usr") + $(use_with xml libxml "${EPREFIX}/usr") + $(use_with xml libxslt "${EPREFIX}/usr") + $(use_with xerces xerces "${EPREFIX}/usr") + $(use_with hdf5 hdf5 "${EPREFIX}/usr") + $(use_with xalan xalan "${EPREFIX}/usr") +# $(use_with gif gif "${EPREFIX}/usr") + $(use_with jpeg jpeg "${EPREFIX}/usr") + $(use_with tiff tiff "${EPREFIX}/usr") + $(use_with png png "${EPREFIX}/usr") + $(use_with xpm xpm "${EPREFIX}/usr") + $(use_with curl curl "${EPREFIX}/usr") +# $(use_with X x "${EPREFIX}/usr") $(use_with X x) ) @@ -244,14 +246,14 @@ src_configure() { # copy optimization -O options from CXXFLAGS to DEF_FAST_FLAGS and pass that also to configure # otherwise your -O2 will be dropped in some subdirectories and repalced by e.g. -O9 - einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}"/usr --libdir=/usr/lib64 ${myconf[@]}" + einfo "bash ./src/build-system/configure --srcdir="${S}" --prefix="${EPREFIX}/usr" --libdir=/usr/lib64 ${myconf[@]}" # bash \ # ./src/build-system/configure \ # cd src/build-system || die econf \ --srcdir="${S}" \ - --prefix="${EPREFIX}"/usr \ + --prefix="${EPREFIX}/usr" \ --libdir=/usr/lib64 \ ${myconf[@]} || die #--without-debug \ @@ -278,7 +280,14 @@ src_compile() { } src_install() { - emake install || die + rm -rvf "${S}"_build/lib/ncbi || die + emake install prefix="${ED}/usr" libdir="${ED}/usr/$(get_libdir)/${PN}" + +# dobin "${S}"_build/bin/* +# dolib.so "${S}"_build/lib/*so* +# dolib.a "${S}"_build/lib/*.a +# doheader "${S}"_build/inc/* + # File collisions with sci-biology/ncbi-tools rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp} mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop2 |