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5 files changed, 0 insertions, 166 deletions

diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
deleted file mode 100644
index e611ad790..000000000
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-biology/ncbi-tools++
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-  28 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
-  New package, ebuild written by me
-
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
deleted file mode 100644
index 2ee791459..000000000
--- a/sci-biology/ncbi-tools++/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST ncbi_cxx--Dec_31_2008.tar.gz 13038519 RMD160 cd9427eae2db895cb509e6d3c6d61d5095b9f98f SHA1 ac3ffbcd1a7ab3d409f0480112657cb9cb956422 SHA256 79bdd721bde6a5347edc5a777b79621068d36ad7a7c8d99ef66b58dc58035bac
-EBUILD ncbi-tools++-2008.12.31.ebuild 1682 RMD160 61d4d7cd91180b97df06def6271ca8b4d89a81dd SHA1 b2d0963f3afbeb6dcead3699dc2462755ebd6a68 SHA256 43394c2a5b22eee7f42fa066600e4e111b5efcf5891e42d39fcea6c349d9005f
-MISC ChangeLog 223 RMD160 a57be8cda01f645a4a5985c43304e55d6531a54a SHA1 6dd7e594e16e93c4b4c884ab8bfc43b1d8553cea SHA256 ee0b81396c642b4e40e07316a618f46fc29397687628c151abafe371c51c2871
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-biology/ncbi-tools++/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/ncbi-tools++/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
deleted file mode 100644
index fce828460..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit multilib
-
-MY_P="ncbi_cxx--Dec_31_2008"
-
-DESCRIPTION="NCBI C++ Toolkit"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Dec_31_2008/${MY_P}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="X unicode opengl gnutls -minimal"
-KEYWORDS="~amd64 ~x86"
-
-# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
-# dev-libs/xalan-c
-#	X? ( x11-libs/fltk
-#		x11-libs/wxGTK )
-DEPEND="!minimal? ( dev-libs/libxml2
-	dev-libs/libxslt
-	dev-db/sqlite:3
-	dev-libs/xerces-c
-	media-libs/libpng
-	media-libs/tiff
-	media-libs/jpeg
-	x11-libs/libXpm
-	dev-libs/lzo:2
-	app-text/sablotron
-	dev-libs/boost
-	unicode? ( dev-libs/icu )
-	opengl? ( media-libs/glut
-		media-libs/mesa )
-	gnutls? ( net-libs/gnutls ) )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_configure() {
-	# econf fails
-	"${S}"/configure --without-debug --with-bin-release --prefix="${D}"/usr \
-		--libdir="${D}"/usr/$(get_libdir) \
-		--with-z="/usr" \
-		--with-bz2="/usr" \
-		--with-pcre="/usr" \
-		--with-openssl="/usr" \
-		--with-icu="/usr" \
-		--with-boost="/usr" \
-		--with-fltk="/usr" \
-		--with-mesa="/usr" \
-		--with-glut="/usr" \
-		--with-sablot="/usr" \
-		--without-wxwidgets \
-		|| die
-#		--with-wxwidgets="/usr" \
-}
-
-src_compile() {
-	emake all_r -C GCC412-Release64/build || die
-}
-
-src_install() {
-	emake install || die
-	# File collisions with sci-biology/ncbi-tools. TODO: check for more
-	(cd "${D}/usr"; rm -f bin/asn2asn bin/rpsblast bin/test_regexp lib64/libblast.a)
-}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild
deleted file mode 100644
index 35cea00da..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.2 2009/03/15 17:58:50 maekke Exp $
-
-# TODO: testing on x86
-
-EAPI="2"
-
-inherit multilib
-
-MY_TAG="May_15_2009"
-MY_Y="${TAG/*_/}"
-MY_P="ncbi_cxx--${MY_TAG}"
-
-DESCRIPTION="NCBI C++ Toolkit"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="X unicode opengl gnutls -minimal"
-KEYWORDS="~amd64 ~x86"
-
-# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
-# dev-libs/xalan-c - problems detecting, api mismatch?
-DEPEND="!minimal? ( dev-libs/libxml2
-	dev-libs/libxslt
-	dev-db/sqlite:3
-	dev-libs/xerces-c
-	media-libs/libpng
-	media-libs/tiff
-	media-libs/jpeg
-	x11-libs/libXpm
-	dev-libs/lzo:2
-	app-text/sablotron
-	dev-libs/boost
-	unicode? ( dev-libs/icu )
-	opengl? ( media-libs/glut
-		media-libs/mesa )
-	gnutls? ( net-libs/gnutls )
-	X? ( x11-libs/fltk
-		x11-libs/wxGTK ) )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_configure() {
-	# econf fails
-	"${S}"/configure --without-debug --with-bin-release --prefix="${D}"/usr \
-		--libdir="${D}"/usr/$(get_libdir) \
-		--with-z="/usr" \
-		--with-bz2="/usr" \
-		--with-pcre="/usr" \
-		--with-openssl="/usr" \
-		--with-icu="/usr" \
-		--with-boost="/usr" \
-		--with-fltk="/usr" \
-		--with-mesa="/usr" \
-		--with-glut="/usr" \
-		--with-sablot="/usr" \
-		--without-wxwidgets \
-		|| die
-#		--with-xalan="/usr" \
-#		--with-wxwidgets="/usr" \
-}
-
-src_compile() {
-	emake all_r -C GCC*-Release*/build || die
-}
-
-src_install() {
-	emake install || die
-	# File collisions with sci-biology/ncbi-tools
-	rm -f "${D}"/usr/bin/{asn2asn,rpsblast,test_regexp}
-	rm -f "${D}"/usr/$(get_libdir)/libblast.a
-}