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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-03-03 02:01:56 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-03-03 02:01:56 +0100 |
| commit | b6341cabb0f9199c7207ad6aead498d64d357f95 (patch) | |
| tree | 19c4c091eeb92d4d92db9b28a1b222f23ba44415 /sci-biology/ssaha2-bin | |
| parent | sci-biology/est2uni: current Manifest file (diff) | |
| download | sci-b6341cabb0f9199c7207ad6aead498d64d357f95.tar.gz sci-b6341cabb0f9199c7207ad6aead498d64d357f95.tar.bz2 sci-b6341cabb0f9199c7207ad6aead498d64d357f95.zip | |
sci-biology/ssaha2: new package, the GRL license text extracted from the saha2-manual.pdf seems kind of ... not like a real License text
(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)
Diffstat (limited to 'sci-biology/ssaha2-bin')
| -rw-r--r-- | sci-biology/ssaha2-bin/Manifest | 7 | ||||
| -rw-r--r-- | sci-biology/ssaha2-bin/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild | 44 |
3 files changed, 60 insertions, 0 deletions
diff --git a/sci-biology/ssaha2-bin/Manifest b/sci-biology/ssaha2-bin/Manifest new file mode 100644 index 000000000..771e2af59 --- /dev/null +++ b/sci-biology/ssaha2-bin/Manifest @@ -0,0 +1,7 @@ +DIST samflag.c 2424 RMD160 a338182d756bdcd1214861d6273c0149df5e3177 SHA1 631282cc7fe88bac4f43011a0db09d9a1494859a SHA256 945958214ef1adc40029a6b3c323c37338e095e9e2bcbff5e5ec05aadbdb67d0 +DIST ssaha2-manual.pdf 163188 RMD160 903bc1dc7f7bf89966f957c9df3c82128e233a53 SHA1 8e332b01628a3b64ea3dcc86d654a99d59277934 SHA256 1a0529168b71ac55e13b34264a854daa6a5dac9468f81ccb5b63bd5e1baafdbf +DIST ssaha2_i686.tgz 288481 RMD160 0c493b917f40f5f259b6a6fe564ebc6a9e4409ec SHA1 b042e36c57f5e89098b6c5f07a2d646c02e76110 SHA256 7d173d763d9f685ef3d0075124bf8b763c6d2d3ed1a1f823bc66d6b6b029abed +DIST ssaha2_ia64.tgz 458507 RMD160 8c3c821d292db94036f8d93342357ff0a8773bbe SHA1 a7ac847a64240f85eca3aff0df21bf9d339eed8f SHA256 3eb2a31559911f3ee87e11f3b977962da31b60c25ea0c9a064edfd1165b6b5dd +DIST ssaha2_x86_64.tgz 287790 RMD160 93938da9898f30cf77f020329316228fd47ebe41 SHA1 d16d38e3bdab97994b4a70e4c0fc737a09b94d3a SHA256 0135ab2e285a898d450744b7c9d643efbeb6048783169a6647f310ce2e7b8138 +EBUILD ssaha2-bin-2.5.3.ebuild 1263 RMD160 b4b9e352c03e338dfc401cc14cb9bde7f390489a SHA1 dbf511a5e06dcf619d38429ad525ee6f94e12554 SHA256 ea6290cf7a13b6a97efccf97fe69bf17802a87a58642c94c5e9b1e94160d0469 +MISC metadata.xml 269 RMD160 53c242e331b0a82669ca7913da16dac854ab8dca SHA1 bc75ba3b0f5607ac5f396d3e8a99daf5ded5a7de SHA256 13472fd0615d2b381dbe36666fe1bbf3b1c34770aa409c6101b38741b4586f85 diff --git a/sci-biology/ssaha2-bin/metadata.xml b/sci-biology/ssaha2-bin/metadata.xml new file mode 100644 index 000000000..07b525505 --- /dev/null +++ b/sci-biology/ssaha2-bin/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild new file mode 100644 index 000000000..4c55b8f0b --- /dev/null +++ b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +inherit toolchain-funcs + +DESCRIPTION="SSAHA2: Sequence Search and Alignment by Hashing Algorithm" +HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2" +SRC_URI="x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i686.tgz ) + amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_x86_64.tgz ) + ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_ia64.tgz ) + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pdf" + +LICENSE="GRL" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +if use x86; then + S="${WORKDIR}"/ssaha2_v"${PV}"_i686 +fi +if use amd64; then + S="${WORKDIR}"/ssaha2_v"${PV}"_x86_64 +fi +if use ia64; then + S="${WORKDIR}"/ssaha2_v"${PV}"_ia64 +fi + +src_compile() { + $(tc-getCC) ${CFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed to compile samflags" +} + +src_install() { + dobin samflag ssaha2 ssaha2Build ssahaSNP || die "dobin failed" + dodoc README || die "dodoc failed" + dodoc "${DISTDIR}"/ssaha2-manual.pdf || die "Failed to install ssaha2-manual.pdf" +} + |